Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808033746/nc2116sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536808033746/nc2116Isup2.hkl |
CCDC reference: 709393
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.003 Å
- R factor = 0.045
- wR factor = 0.128
- Data-to-parameter ratio = 16.2
checkCIF/PLATON results
No syntax errors found
Alert level C Value of measurement temperature given = 293.000 Value of melting point given = 0.000 DIFMX01_ALERT_2_C The maximum difference density is > 0.1*ZMAX*0.75 _refine_diff_density_max given = 0.681 Test value = 0.600 DIFMX02_ALERT_1_C The maximum difference density is > 0.1*ZMAX*0.75 The relevant atom site should be identified. PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 3.44 PLAT097_ALERT_2_C Maximum (Positive) Residual Density ............ 0.68 e/A PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.99 PLAT231_ALERT_4_C Hirshfeld Test (Solvent) C11 -- C12 .. 5.86 su
Alert level G PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 7 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 4 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
All chemicals were obtained from commercial sources and used without further purification except for L (L is 1,2-bis{2-[(2-hydroxyethyl)aminomethyl]phenoxy}ethane). 1,4-bis(2-formylphenyl)-1,4-dioxabutuane, which was prepared according to the literature (Armstrong & Lindoy, 1975). 2-aminoethanol (1.22 g, 2.0 mol) in 50 ml of methanol were added slowly to a stirred boiling solution of 1,4-bis(2'-formylphenyl)-1,4-dioxabutuane (2.70 g, 1 mol) in 100 ml of methanol. The mixed solution was refluxed for 1 h, filtered off and cooled to room temperature. 1.52 g NaBH4 were added slowly to the filtrate and stirred for a further 2 h. The solvent was evaporated and 100 ml water of were added. After extraction with chloroform the solvent was evaporated, which led to a white solid of L. Crystals of the title compound were obtained by dissolving L (0.180 g, 1 mmol) and fumaric acid (0.116 g, 1 mmol) in a mixture of ethanol and water (1:1), followed by slow evaporation of the solvents.
The C—H H atoms were positioned with idealized geometry and treated as riding atoms with distances C—H = 0.97 (CH2) and 0.93 Å (CH).90 Å and Uiso = 1.2Ueq(C). The H atoms bonded to N atoms and O atoms were located in a difference Fourier map and were refined vith varying coordinates isotropic with Uiso(H) = 1.5Ueq of the parent atom.
Data collection: PROCESS-AUTO (Rigaku, 1998); cell refinement: PROCESS-AUTO (Rigaku, 1998); data reduction: PROCESS-AUTO (Rigaku, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
C20H30N2O42+·C4H2O42−·4H2O | Z = 1 |
Mr = 548.58 | F(000) = 294 |
Triclinic, P1 | Dx = 1.315 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71069 Å |
a = 7.585 (7) Å | Cell parameters from 3128 reflections |
b = 8.623 (6) Å | θ = 3.1–27.4° |
c = 11.515 (7) Å | µ = 0.11 mm−1 |
α = 104.64 (2)° | T = 293 K |
β = 96.77 (3)° | Block, colourless |
γ = 104.29 (3)° | 0.41 × 0.34 × 0.28 mm |
V = 693.0 (9) Å3 |
Rigaku R-AXIS RAPID diffractometer | 3128 independent reflections |
Radiation source: fine-focus sealed tube | 2394 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
Detector resolution: 10.0 pixels mm-1 | θmax = 27.4°, θmin = 3.1° |
ω scans | h = −9→9 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −11→10 |
Tmin = 0.952, Tmax = 0.983 | l = −14→14 |
6826 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0619P)2 + 0.1182P] where P = (Fo2 + 2Fc2)/3 |
3128 reflections | (Δ/σ)max < 0.001 |
193 parameters | Δρmax = 0.68 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C20H30N2O42+·C4H2O42−·4H2O | γ = 104.29 (3)° |
Mr = 548.58 | V = 693.0 (9) Å3 |
Triclinic, P1 | Z = 1 |
a = 7.585 (7) Å | Mo Kα radiation |
b = 8.623 (6) Å | µ = 0.11 mm−1 |
c = 11.515 (7) Å | T = 293 K |
α = 104.64 (2)° | 0.41 × 0.34 × 0.28 mm |
β = 96.77 (3)° |
Rigaku R-AXIS RAPID diffractometer | 3128 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 2394 reflections with I > 2σ(I) |
Tmin = 0.952, Tmax = 0.983 | Rint = 0.018 |
6826 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.68 e Å−3 |
3128 reflections | Δρmin = −0.20 e Å−3 |
193 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.4884 (2) | 0.33265 (18) | 0.58122 (12) | 0.0353 (3) | |
C2 | 0.3124 (2) | 0.2213 (2) | 0.54836 (15) | 0.0470 (4) | |
H2 | 0.2257 | 0.2368 | 0.5977 | 0.056* | |
C3 | 0.2632 (3) | 0.0871 (2) | 0.44313 (17) | 0.0582 (5) | |
H3 | 0.1438 | 0.0140 | 0.4212 | 0.070* | |
C4 | 0.3923 (3) | 0.0628 (2) | 0.37144 (15) | 0.0576 (5) | |
H4 | 0.3599 | −0.0284 | 0.3015 | 0.069* | |
C5 | 0.5695 (3) | 0.1718 (2) | 0.40173 (14) | 0.0507 (4) | |
H5 | 0.6560 | 0.1539 | 0.3528 | 0.061* | |
C6 | 0.6173 (2) | 0.3083 (2) | 0.50592 (12) | 0.0388 (3) | |
C7 | 0.5438 (2) | 0.48184 (19) | 0.69256 (13) | 0.0381 (3) | |
H7A | 0.5907 | 0.5822 | 0.6688 | 0.046* | |
H7B | 0.4355 | 0.4914 | 0.7277 | 0.046* | |
C8 | 0.7528 (2) | 0.61530 (18) | 0.90008 (13) | 0.0406 (3) | |
H8A | 0.8408 | 0.5931 | 0.9574 | 0.049* | |
H8B | 0.6472 | 0.6266 | 0.9380 | 0.049* | |
C9 | 0.8425 (2) | 0.77871 (19) | 0.87634 (15) | 0.0471 (4) | |
H9A | 0.7507 | 0.8081 | 0.8269 | 0.056* | |
H9B | 0.8863 | 0.8665 | 0.9536 | 0.056* | |
C10 | 0.9210 (2) | 0.4234 (2) | 0.46928 (15) | 0.0532 (4) | |
H10A | 0.8711 | 0.4244 | 0.3880 | 0.064* | |
H10B | 0.9610 | 0.3235 | 0.4623 | 0.064* | |
C11 | 0.6218 (2) | 0.21555 (18) | 0.97927 (15) | 0.0403 (3) | |
C12 | 0.5574 (2) | 0.07174 (19) | 1.03092 (14) | 0.0431 (4) | |
H12 | 0.6033 | 0.0873 | 1.1129 | 0.052* | |
O1 | 0.78557 (15) | 0.42777 (16) | 0.54483 (10) | 0.0503 (3) | |
O2 | 0.52895 (15) | 0.21994 (13) | 0.88286 (10) | 0.0485 (3) | |
O3 | 0.76640 (19) | 0.32235 (16) | 1.03867 (13) | 0.0684 (4) | |
O1W | 0.0354 (2) | 0.3790 (2) | 0.77573 (13) | 0.0646 (4) | |
H1C | 0.050 (4) | 0.289 (4) | 0.787 (2) | 0.097* | |
H1D | 0.122 (4) | 0.462 (4) | 0.836 (3) | 0.097* | |
O2W | 0.1427 (2) | 0.09631 (18) | 0.79075 (15) | 0.0672 (4) | |
H2C | 0.260 (5) | 0.129 (4) | 0.818 (3) | 0.101* | |
H2D | 0.101 (4) | −0.004 (4) | 0.795 (3) | 0.101* | |
O4 | 0.99312 (17) | 0.76942 (15) | 0.81566 (12) | 0.0521 (3) | |
H4A | 1.073 (3) | 0.739 (3) | 0.860 (2) | 0.078* | |
N5 | 0.68936 (17) | 0.46959 (14) | 0.78706 (10) | 0.0310 (3) | |
H5A | 0.792 (3) | 0.458 (2) | 0.7581 (16) | 0.046* | |
H5B | 0.638 (2) | 0.374 (2) | 0.8117 (15) | 0.046* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0385 (8) | 0.0408 (8) | 0.0311 (6) | 0.0160 (6) | 0.0048 (5) | 0.0145 (6) |
C2 | 0.0411 (9) | 0.0564 (10) | 0.0431 (8) | 0.0116 (7) | 0.0047 (7) | 0.0178 (7) |
C3 | 0.0580 (11) | 0.0534 (10) | 0.0505 (10) | 0.0022 (9) | −0.0066 (8) | 0.0145 (8) |
C4 | 0.0831 (14) | 0.0453 (9) | 0.0381 (8) | 0.0208 (9) | −0.0048 (8) | 0.0062 (7) |
C5 | 0.0675 (12) | 0.0614 (10) | 0.0326 (7) | 0.0346 (9) | 0.0104 (7) | 0.0139 (7) |
C6 | 0.0426 (8) | 0.0501 (9) | 0.0309 (7) | 0.0206 (7) | 0.0070 (6) | 0.0172 (6) |
C7 | 0.0407 (8) | 0.0432 (8) | 0.0363 (7) | 0.0194 (6) | 0.0082 (6) | 0.0142 (6) |
C8 | 0.0494 (9) | 0.0363 (8) | 0.0324 (7) | 0.0077 (7) | 0.0096 (6) | 0.0077 (6) |
C9 | 0.0546 (10) | 0.0323 (8) | 0.0485 (8) | 0.0073 (7) | 0.0042 (7) | 0.0095 (7) |
C10 | 0.0455 (9) | 0.0832 (13) | 0.0438 (9) | 0.0271 (9) | 0.0210 (7) | 0.0269 (9) |
C11 | 0.0413 (8) | 0.0330 (7) | 0.0523 (9) | 0.0105 (6) | 0.0112 (7) | 0.0213 (7) |
C12 | 0.0460 (9) | 0.0398 (8) | 0.0414 (8) | 0.0063 (6) | 0.0036 (6) | 0.0166 (6) |
O1 | 0.0404 (6) | 0.0728 (8) | 0.0381 (6) | 0.0139 (6) | 0.0152 (5) | 0.0156 (5) |
O2 | 0.0438 (6) | 0.0429 (6) | 0.0542 (7) | −0.0019 (5) | 0.0034 (5) | 0.0230 (5) |
O3 | 0.0600 (8) | 0.0487 (7) | 0.0848 (10) | −0.0074 (6) | −0.0187 (7) | 0.0361 (7) |
O1W | 0.0677 (9) | 0.0684 (9) | 0.0612 (8) | 0.0352 (8) | 0.0032 (6) | 0.0141 (7) |
O2W | 0.0480 (8) | 0.0537 (8) | 0.1011 (11) | 0.0065 (6) | −0.0001 (7) | 0.0393 (8) |
O4 | 0.0433 (7) | 0.0515 (7) | 0.0639 (7) | 0.0049 (5) | 0.0056 (5) | 0.0319 (6) |
N5 | 0.0327 (6) | 0.0306 (6) | 0.0313 (6) | 0.0079 (5) | 0.0087 (5) | 0.0122 (5) |
C1—C2 | 1.383 (2) | C9—O4 | 1.416 (2) |
C1—C6 | 1.400 (2) | C9—H9A | 0.9700 |
C1—C7 | 1.499 (2) | C9—H9B | 0.9700 |
C2—C3 | 1.385 (3) | C10—O1 | 1.424 (2) |
C2—H2 | 0.9300 | C10—C10i | 1.492 (4) |
C3—C4 | 1.374 (3) | C10—H10A | 0.9700 |
C3—H3 | 0.9300 | C10—H10B | 0.9700 |
C4—C5 | 1.383 (3) | C11—O3 | 1.235 (2) |
C4—H4 | 0.9300 | C11—O2 | 1.257 (2) |
C5—C6 | 1.389 (2) | C11—C12 | 1.508 (2) |
C5—H5 | 0.9300 | C12—C12ii | 1.293 (3) |
C6—O1 | 1.369 (2) | C12—H12 | 0.9300 |
C7—N5 | 1.499 (2) | O1W—H1C | 0.85 (3) |
C7—H7A | 0.9700 | O1W—H1D | 0.91 (3) |
C7—H7B | 0.9700 | O2W—H2C | 0.85 (3) |
C8—N5 | 1.494 (2) | O2W—H2D | 0.86 (3) |
C8—C9 | 1.513 (2) | O4—H4A | 0.88 (3) |
C8—H8A | 0.9700 | N5—H5A | 0.900 (19) |
C8—H8B | 0.9700 | N5—H5B | 0.950 (19) |
C2—C1—C6 | 118.93 (15) | H8A—C8—H8B | 107.7 |
C2—C1—C7 | 122.15 (14) | O4—C9—C8 | 112.16 (13) |
C6—C1—C7 | 118.89 (14) | O4—C9—H9A | 109.2 |
C1—C2—C3 | 120.98 (17) | C8—C9—H9A | 109.2 |
C1—C2—H2 | 119.5 | O4—C9—H9B | 109.2 |
C3—C2—H2 | 119.5 | C8—C9—H9B | 109.2 |
C4—C3—C2 | 119.45 (18) | H9A—C9—H9B | 107.9 |
C4—C3—H3 | 120.3 | O1—C10—C10i | 105.74 (17) |
C2—C3—H3 | 120.3 | O1—C10—H10A | 110.6 |
C3—C4—C5 | 121.00 (17) | C10i—C10—H10A | 110.6 |
C3—C4—H4 | 119.5 | O1—C10—H10B | 110.6 |
C5—C4—H4 | 119.5 | C10i—C10—H10B | 110.6 |
C4—C5—C6 | 119.42 (17) | H10A—C10—H10B | 108.7 |
C4—C5—H5 | 120.3 | O3—C11—O2 | 125.21 (14) |
C6—C5—H5 | 120.3 | O3—C11—C12 | 114.98 (14) |
O1—C6—C5 | 125.51 (15) | O2—C11—C12 | 119.81 (14) |
O1—C6—C1 | 114.30 (14) | C12ii—C12—C11 | 124.47 (19) |
C5—C6—C1 | 120.19 (16) | C12ii—C12—H12 | 117.8 |
N5—C7—C1 | 112.04 (12) | C11—C12—H12 | 117.8 |
N5—C7—H7A | 109.2 | C6—O1—C10 | 118.86 (13) |
C1—C7—H7A | 109.2 | H1C—O1W—H1D | 104 (2) |
N5—C7—H7B | 109.2 | H2C—O2W—H2D | 108 (3) |
C1—C7—H7B | 109.2 | C9—O4—H4A | 108.2 (15) |
H7A—C7—H7B | 107.9 | C8—N5—C7 | 114.91 (12) |
N5—C8—C9 | 113.42 (13) | C8—N5—H5A | 106.3 (11) |
N5—C8—H8A | 108.9 | C7—N5—H5A | 112.5 (11) |
C9—C8—H8A | 108.9 | C8—N5—H5B | 106.9 (10) |
N5—C8—H8B | 108.9 | C7—N5—H5B | 107.6 (10) |
C9—C8—H8B | 108.9 | H5A—N5—H5B | 108.3 (15) |
C6—C1—C2—C3 | 0.3 (2) | C2—C1—C7—N5 | 114.29 (16) |
C7—C1—C2—C3 | 178.16 (14) | C6—C1—C7—N5 | −67.81 (17) |
C1—C2—C3—C4 | 1.1 (3) | N5—C8—C9—O4 | −55.82 (19) |
C2—C3—C4—C5 | −1.0 (3) | O3—C11—C12—C12ii | −160.5 (2) |
C3—C4—C5—C6 | −0.3 (3) | O2—C11—C12—C12ii | 19.9 (3) |
C4—C5—C6—O1 | −178.31 (14) | C5—C6—O1—C10 | 5.5 (2) |
C4—C5—C6—C1 | 1.6 (2) | C1—C6—O1—C10 | −174.42 (13) |
C2—C1—C6—O1 | 178.34 (12) | C10i—C10—O1—C6 | 174.87 (16) |
C7—C1—C6—O1 | 0.37 (18) | C9—C8—N5—C7 | −61.95 (18) |
C2—C1—C6—C5 | −1.6 (2) | C1—C7—N5—C8 | 179.32 (12) |
C7—C1—C6—C5 | −179.58 (13) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+1, −y, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1C···O2W | 0.85 (3) | 1.97 (3) | 2.792 (3) | 164 (3) |
O2W—H2C···O2 | 0.85 (3) | 1.97 (3) | 2.828 (3) | 176 (3) |
N5—H5B···O2 | 0.950 (19) | 1.811 (19) | 2.749 (2) | 168.6 (16) |
O1W—H1D···O3iii | 0.91 (3) | 1.96 (3) | 2.830 (3) | 159 (3) |
O2W—H2D···O4iv | 0.86 (3) | 2.01 (3) | 2.867 (3) | 175 (3) |
N5—H5A···O1Wv | 0.900 (19) | 2.125 (19) | 2.925 (3) | 147.6 (15) |
Symmetry codes: (iii) −x+1, −y+1, −z+2; (iv) x−1, y−1, z; (v) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C20H30N2O42+·C4H2O42−·4H2O |
Mr | 548.58 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.585 (7), 8.623 (6), 11.515 (7) |
α, β, γ (°) | 104.64 (2), 96.77 (3), 104.29 (3) |
V (Å3) | 693.0 (9) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.41 × 0.34 × 0.28 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.952, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6826, 3128, 2394 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.648 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.128, 1.11 |
No. of reflections | 3128 |
No. of parameters | 193 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.68, −0.20 |
Computer programs: PROCESS-AUTO (Rigaku, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1C···O2W | 0.85 (3) | 1.97 (3) | 2.792 (3) | 164 (3) |
O2W—H2C···O2 | 0.85 (3) | 1.97 (3) | 2.828 (3) | 176 (3) |
N5—H5B···O2 | 0.950 (19) | 1.811 (19) | 2.749 (2) | 168.6 (16) |
O1W—H1D···O3i | 0.91 (3) | 1.96 (3) | 2.830 (3) | 159 (3) |
O2W—H2D···O4ii | 0.86 (3) | 2.01 (3) | 2.867 (3) | 175 (3) |
N5—H5A···O1Wiii | 0.900 (19) | 2.125 (19) | 2.925 (3) | 147.6 (15) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x−1, y−1, z; (iii) x+1, y, z. |
Currently, many groups are investigating crystal structures of cocrystals containing organic acids and organic bases, which are based on hydrogen bonding (Wang & Wei, 2005). In this context, the crystal structure of the title compound is presented.
The crystal structure consists of one N,N'-bis(2-hydroxyethyl)-N,N'-[ethylenedioxybis(o-phenylenemethylene)]diammonium cation and one fumarate anion located on centers of inversion and two crystallographically independent water molecules that occupy general positions (Fig. 1). In the crystal structure, different O—H···O and N—H···O hydrogen bonds link the components of the title compound into a three-dimensional network (Table 1 and Fig. 2).