Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808009288/ng2443sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536808009288/ng2443Isup2.hkl |
CCDC reference: 688932
Key indicators
- Single-crystal X-ray study
- T = 98 K
- Mean (C-C) = 0.003 Å
- R factor = 0.047
- wR factor = 0.119
- Data-to-parameter ratio = 17.7
checkCIF/PLATON results
No syntax errors found
Alert level C SHFSU01_ALERT_2_C Test not performed. _refine_ls_shift/su_max and _refine_ls_shift/esd_max not present. Absolute value of the parameter shift to su ratio given 0.001 PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ? PLAT480_ALERT_4_C Long H...A H-Bond Reported H11 .. O3 .. 2.62 Ang.
Alert level G PLAT793_ALERT_2_G Check the Absolute Configuration of C2 ..... S
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Initially, the 3-phenylsulfanyl-1-methyl-2-piperidone was obtained from the reaction of 1-methyl-2-piperidinone and diphenyl disulfide with LDA in THF as described in the literature (Zoretic and Soja, 1976). The product was oxidized with H2O2 and SeO2 (as catalyst) in methanol (Drabowicz et al. 1983) to give compound (I). After extraction with chloroform and subsequent evaporation, a crude solid was obtained. This product was subjected to flash chromatography with a solution of ethyl acetate and acetone in a 7:3 ratio. Suitable crystals were obtained by vapor diffusion from chloroform/n-hexane at 283 K.; m.p. 414–415 K. IR (cm-1): ν(C=O) 1652, ν(SO2)(as) 1307, ν(SO2)(s) 1148. NMR (CDCl3, p.p.m.): δ 1.79–2.74 (4H, m), 2.95 (3H, s), 3.30–3.48 (2H, m), 3.97 (1H, triplet, J = 6.1 Hz), 7.53–7.57 (2H, m, aryl-H), 7.62–7.67 (1H, m, aryl-H), 7.92–7.94 (2H, m, aryl-H). Analysis found: C 56.86, H 6.04, N 5.58; C12H15O3NS requires: C 56.89, H 5.97, N 5.53%.
All H atoms were included in the riding-model approximation with C—H = 0.95 - 1.00 Å, and with Uiso(H) = 1.5Ueq(methyl-C) or 1.2Ueq(remaining-C).
Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SIR92 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
C12H15NO3S | F(000) = 536 |
Mr = 253.32 | Dx = 1.389 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71070 Å |
Hall symbol: -P 2yn | Cell parameters from 4417 reflections |
a = 9.0191 (16) Å | θ = 2.4–40.6° |
b = 10.4920 (18) Å | µ = 0.26 mm−1 |
c = 13.446 (3) Å | T = 98 K |
β = 107.861 (3)° | Block, colourless |
V = 1211.1 (4) Å3 | 0.25 × 0.18 × 0.10 mm |
Z = 4 |
Rigaku AFC12κ/SATURN724 diffractometer | 2729 independent reflections |
Radiation source: fine-focus sealed tube | 2549 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
ω scans | θmax = 27.5°, θmin = 2.5° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −10→11 |
Tmin = 0.945, Tmax = 0.974 | k = −13→11 |
5193 measured reflections | l = −17→7 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.118 | H-atom parameters constrained |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0539P)2 + 0.7818P] where P = (Fo2 + 2Fc2)/3 |
2729 reflections | (Δ/σ)max < 0.001 |
154 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.45 e Å−3 |
C12H15NO3S | V = 1211.1 (4) Å3 |
Mr = 253.32 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.0191 (16) Å | µ = 0.26 mm−1 |
b = 10.4920 (18) Å | T = 98 K |
c = 13.446 (3) Å | 0.25 × 0.18 × 0.10 mm |
β = 107.861 (3)° |
Rigaku AFC12κ/SATURN724 diffractometer | 2729 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 2549 reflections with I > 2σ(I) |
Tmin = 0.945, Tmax = 0.974 | Rint = 0.025 |
5193 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.118 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.39 e Å−3 |
2729 reflections | Δρmin = −0.45 e Å−3 |
154 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.76305 (5) | 0.20597 (4) | 0.49677 (3) | 0.01768 (15) | |
O1 | 1.13033 (15) | 0.14856 (13) | 0.56636 (9) | 0.0186 (3) | |
O2 | 0.79732 (18) | 0.33520 (13) | 0.53443 (11) | 0.0265 (3) | |
O3 | 0.60745 (15) | 0.17739 (15) | 0.43018 (11) | 0.0275 (3) | |
N1 | 1.11807 (17) | 0.30781 (15) | 0.45077 (11) | 0.0170 (3) | |
C1 | 1.0585 (2) | 0.20646 (17) | 0.48622 (13) | 0.0147 (3) | |
C2 | 0.8952 (2) | 0.16205 (17) | 0.42479 (13) | 0.0153 (3) | |
H2 | 0.8969 | 0.0669 | 0.4210 | 0.018* | |
C3 | 0.8348 (2) | 0.21313 (18) | 0.31267 (14) | 0.0196 (4) | |
H3A | 0.8843 | 0.1657 | 0.2676 | 0.024* | |
H3B | 0.7208 | 0.1998 | 0.2850 | 0.024* | |
C4 | 0.8711 (2) | 0.35463 (19) | 0.30992 (14) | 0.0214 (4) | |
H4A | 0.8313 | 0.3865 | 0.2372 | 0.026* | |
H4B | 0.8188 | 0.4027 | 0.3530 | 0.026* | |
C5 | 1.0457 (2) | 0.37553 (19) | 0.35160 (14) | 0.0208 (4) | |
H5A | 1.0942 | 0.3460 | 0.2989 | 0.025* | |
H5B | 1.0668 | 0.4679 | 0.3625 | 0.025* | |
C6 | 1.2777 (2) | 0.3460 (2) | 0.50751 (14) | 0.0213 (4) | |
H6A | 1.3156 | 0.2956 | 0.5717 | 0.032* | |
H6B | 1.2794 | 0.4367 | 0.5254 | 0.032* | |
H6C | 1.3448 | 0.3314 | 0.4635 | 0.032* | |
C7 | 0.8027 (2) | 0.10460 (17) | 0.60682 (13) | 0.0166 (3) | |
C8 | 0.9117 (2) | 0.14160 (19) | 0.70016 (14) | 0.0199 (4) | |
H8 | 0.9681 | 0.2189 | 0.7041 | 0.024* | |
C9 | 0.9368 (2) | 0.0641 (2) | 0.78751 (14) | 0.0211 (4) | |
H9 | 1.0114 | 0.0879 | 0.8516 | 0.025* | |
C10 | 0.8528 (2) | −0.04843 (19) | 0.78116 (14) | 0.0215 (4) | |
H10 | 0.8704 | −0.1013 | 0.8411 | 0.026* | |
C11 | 0.7431 (2) | −0.08410 (19) | 0.68753 (15) | 0.0209 (4) | |
H11 | 0.6856 | −0.1607 | 0.6839 | 0.025* | |
C12 | 0.7177 (2) | −0.00801 (18) | 0.59943 (14) | 0.0185 (4) | |
H12 | 0.6437 | −0.0322 | 0.5352 | 0.022* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0168 (2) | 0.0151 (3) | 0.0225 (2) | 0.00200 (16) | 0.00796 (18) | 0.00263 (16) |
O1 | 0.0179 (6) | 0.0205 (7) | 0.0155 (6) | 0.0007 (5) | 0.0026 (5) | 0.0026 (5) |
O2 | 0.0382 (8) | 0.0134 (7) | 0.0353 (8) | 0.0021 (6) | 0.0223 (7) | 0.0004 (6) |
O3 | 0.0144 (6) | 0.0339 (8) | 0.0324 (7) | 0.0022 (6) | 0.0044 (6) | 0.0120 (6) |
N1 | 0.0153 (7) | 0.0180 (8) | 0.0159 (7) | −0.0018 (6) | 0.0023 (6) | 0.0013 (6) |
C1 | 0.0153 (8) | 0.0149 (9) | 0.0147 (7) | −0.0002 (6) | 0.0056 (6) | −0.0023 (6) |
C2 | 0.0153 (8) | 0.0141 (8) | 0.0163 (8) | 0.0000 (6) | 0.0046 (6) | −0.0010 (6) |
C3 | 0.0181 (9) | 0.0224 (10) | 0.0154 (8) | 0.0001 (7) | 0.0008 (7) | −0.0005 (7) |
C4 | 0.0218 (9) | 0.0215 (9) | 0.0178 (8) | 0.0016 (7) | 0.0015 (7) | 0.0027 (7) |
C5 | 0.0242 (9) | 0.0193 (9) | 0.0174 (8) | −0.0015 (7) | 0.0043 (7) | 0.0044 (7) |
C6 | 0.0187 (9) | 0.0233 (10) | 0.0205 (8) | −0.0054 (7) | 0.0039 (7) | 0.0003 (7) |
C7 | 0.0180 (8) | 0.0145 (8) | 0.0194 (8) | 0.0015 (7) | 0.0090 (7) | 0.0004 (7) |
C8 | 0.0192 (9) | 0.0192 (9) | 0.0232 (9) | −0.0026 (7) | 0.0096 (7) | −0.0035 (7) |
C9 | 0.0197 (9) | 0.0254 (10) | 0.0191 (8) | −0.0010 (7) | 0.0072 (7) | −0.0037 (7) |
C10 | 0.0230 (9) | 0.0243 (10) | 0.0205 (8) | 0.0027 (8) | 0.0113 (7) | 0.0037 (7) |
C11 | 0.0204 (9) | 0.0180 (9) | 0.0274 (9) | −0.0019 (7) | 0.0120 (7) | 0.0002 (7) |
C12 | 0.0173 (8) | 0.0170 (9) | 0.0214 (8) | −0.0014 (7) | 0.0061 (7) | −0.0018 (7) |
S1—O3 | 1.4457 (15) | C5—H5A | 0.9900 |
S1—O2 | 1.4472 (15) | C5—H5B | 0.9900 |
S1—C7 | 1.7674 (18) | C6—H6A | 0.9800 |
S1—C2 | 1.8101 (18) | C6—H6B | 0.9800 |
O1—C1 | 1.233 (2) | C6—H6C | 0.9800 |
N1—C1 | 1.343 (2) | C7—C8 | 1.391 (3) |
N1—C6 | 1.463 (2) | C7—C12 | 1.395 (3) |
N1—C5 | 1.475 (2) | C8—C9 | 1.389 (3) |
C1—C2 | 1.524 (2) | C8—H8 | 0.9500 |
C2—C3 | 1.534 (2) | C9—C10 | 1.391 (3) |
C2—H2 | 1.0000 | C9—H9 | 0.9500 |
C3—C4 | 1.523 (3) | C10—C11 | 1.393 (3) |
C3—H3A | 0.9900 | C10—H10 | 0.9500 |
C3—H3B | 0.9900 | C11—C12 | 1.388 (3) |
C4—C5 | 1.517 (3) | C11—H11 | 0.9500 |
C4—H4A | 0.9900 | C12—H12 | 0.9500 |
C4—H4B | 0.9900 | ||
O3—S1—O2 | 118.26 (9) | N1—C5—C4 | 112.68 (15) |
O3—S1—C7 | 107.61 (9) | N1—C5—H5A | 109.1 |
O2—S1—C7 | 107.71 (9) | C4—C5—H5A | 109.1 |
O3—S1—C2 | 106.81 (9) | N1—C5—H5B | 109.1 |
O2—S1—C2 | 108.70 (8) | C4—C5—H5B | 109.1 |
C7—S1—C2 | 107.28 (8) | H5A—C5—H5B | 107.8 |
C1—N1—C6 | 117.93 (15) | N1—C6—H6A | 109.5 |
C1—N1—C5 | 126.04 (15) | N1—C6—H6B | 109.5 |
C6—N1—C5 | 115.53 (15) | H6A—C6—H6B | 109.5 |
O1—C1—N1 | 122.70 (16) | N1—C6—H6C | 109.5 |
O1—C1—C2 | 118.95 (16) | H6A—C6—H6C | 109.5 |
N1—C1—C2 | 118.35 (15) | H6B—C6—H6C | 109.5 |
C1—C2—C3 | 114.75 (15) | C8—C7—C12 | 121.42 (17) |
C1—C2—S1 | 108.53 (11) | C8—C7—S1 | 119.54 (14) |
C3—C2—S1 | 110.06 (12) | C12—C7—S1 | 118.96 (14) |
C1—C2—H2 | 107.8 | C9—C8—C7 | 119.10 (18) |
C3—C2—H2 | 107.8 | C9—C8—H8 | 120.4 |
S1—C2—H2 | 107.8 | C7—C8—H8 | 120.4 |
C4—C3—C2 | 110.50 (15) | C8—C9—C10 | 120.03 (17) |
C4—C3—H3A | 109.6 | C8—C9—H9 | 120.0 |
C2—C3—H3A | 109.6 | C10—C9—H9 | 120.0 |
C4—C3—H3B | 109.6 | C9—C10—C11 | 120.40 (17) |
C2—C3—H3B | 109.6 | C9—C10—H10 | 119.8 |
H3A—C3—H3B | 108.1 | C11—C10—H10 | 119.8 |
C5—C4—C3 | 109.79 (16) | C12—C11—C10 | 120.17 (18) |
C5—C4—H4A | 109.7 | C12—C11—H11 | 119.9 |
C3—C4—H4A | 109.7 | C10—C11—H11 | 119.9 |
C5—C4—H4B | 109.7 | C11—C12—C7 | 118.87 (17) |
C3—C4—H4B | 109.7 | C11—C12—H12 | 120.6 |
H4A—C4—H4B | 108.2 | C7—C12—H12 | 120.6 |
C6—N1—C1—O1 | 3.1 (3) | C1—N1—C5—C4 | 21.7 (3) |
C5—N1—C1—O1 | 174.61 (17) | C6—N1—C5—C4 | −166.58 (16) |
C6—N1—C1—C2 | −177.19 (15) | C3—C4—C5—N1 | −47.8 (2) |
C5—N1—C1—C2 | −5.7 (3) | O3—S1—C7—C8 | −154.80 (15) |
O1—C1—C2—C3 | −163.27 (15) | O2—S1—C7—C8 | −26.27 (17) |
N1—C1—C2—C3 | 17.0 (2) | C2—S1—C7—C8 | 90.58 (15) |
O1—C1—C2—S1 | 73.16 (18) | O3—S1—C7—C12 | 21.86 (17) |
N1—C1—C2—S1 | −106.55 (15) | O2—S1—C7—C12 | 150.39 (14) |
O3—S1—C2—C1 | 172.73 (12) | C2—S1—C7—C12 | −92.76 (15) |
O2—S1—C2—C1 | 44.09 (14) | C12—C7—C8—C9 | 0.5 (3) |
C7—S1—C2—C1 | −72.12 (14) | S1—C7—C8—C9 | 177.05 (14) |
O3—S1—C2—C3 | 46.40 (15) | C7—C8—C9—C10 | −0.5 (3) |
O2—S1—C2—C3 | −82.24 (14) | C8—C9—C10—C11 | 0.0 (3) |
C7—S1—C2—C3 | 161.55 (12) | C9—C10—C11—C12 | 0.5 (3) |
C1—C2—C3—C4 | −44.1 (2) | C10—C11—C12—C7 | −0.5 (3) |
S1—C2—C3—C4 | 78.63 (17) | C8—C7—C12—C11 | 0.0 (3) |
C2—C3—C4—C5 | 59.6 (2) | S1—C7—C12—C11 | −176.58 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O1i | 1.00 | 2.29 | 3.272 (2) | 168 |
C6—H6B···O2ii | 0.98 | 2.55 | 3.424 (3) | 148 |
C11—H11···O3iii | 0.95 | 2.62 | 3.224 (3) | 122 |
C4—H4A···O1iv | 0.99 | 2.48 | 3.328 (2) | 144 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) −x+2, −y+1, −z+1; (iii) −x+1, −y, −z+1; (iv) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H15NO3S |
Mr | 253.32 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 98 |
a, b, c (Å) | 9.0191 (16), 10.4920 (18), 13.446 (3) |
β (°) | 107.861 (3) |
V (Å3) | 1211.1 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.25 × 0.18 × 0.10 |
Data collection | |
Diffractometer | Rigaku AFC12κ/SATURN724 diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.945, 0.974 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5193, 2729, 2549 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.118, 1.12 |
No. of reflections | 2729 |
No. of parameters | 154 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.39, −0.45 |
Computer programs: CrystalClear (Rigaku, 2005), SIR92 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg, 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O1i | 1.00 | 2.29 | 3.272 (2) | 168 |
C6—H6B···O2ii | 0.98 | 2.55 | 3.424 (3) | 148 |
C11—H11···O3iii | 0.95 | 2.62 | 3.224 (3) | 122 |
C4—H4A···O1iv | 0.99 | 2.48 | 3.328 (2) | 144 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) −x+2, −y+1, −z+1; (iii) −x+1, −y, −z+1; (iv) x−1/2, −y+1/2, z−1/2. |
The title compound (I), Fig. 1, was studied as a part of an on-going investigation of conformational and electronic aspects of different classes of β-keto-sulfones, i.e. α-phenylsulfonyl -acetones, -acetophenones and -cyclohexanones, utilizing spectroscopic, theoretical and X-ray diffraction methods (Dal Colle et al., 1995; Zukerman-Schpector et al., 1999; 2006).
The piperidone ring has a slightly distorted half-chair conformation with a tendency towards a half-boat conformation: the ring-puckering parameters are q2 = 0.340 (2) Å, q3 = 0.332 (2) Å, QT = 0.476 (2) °, ϕ2 = -145.0 (3)° (Cremer & Pople, 1975). The ring substituents, i.e. N-methyl, C-carbonyl and C-phenylsulfonyl, occupy equatorial, equatorial and axial positions, respectively.
The crystal packing is dominated by C—H···O interactions, Table 1. Centrosymmetrically related molecules of (I) are connected into dimeric aggregates via C2—H···O1 contacts and these are linked into layers stacked along (1 0 1) via C6—H···O2 contacts. Connections betweem layers are also of the type C—H···O and serve to consolidate the crystal packing.