Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536809055688/om2308sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536809055688/om2308Isup2.hkl |
CCDC reference: 765341
Key indicators
- Single-crystal X-ray study
- T = 113 K
- Mean (C-C) = 0.003 Å
- R factor = 0.035
- wR factor = 0.085
- Data-to-parameter ratio = 8.0
checkCIF/PLATON results
No syntax errors found
Alert level C CELLV02_ALERT_1_C The supplied cell volume s.u. differs from that calculated from the cell parameter s.u.'s by > 2 Calculated cell volume su = 18.24 Cell volume su given = 16.00 PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.98 PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 1 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 17 PLAT913_ALERT_3_C Missing # of Very Strong Reflections in FCF .... 7 PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT152_ALERT_1_C The Supplied and Calc. Volume s.u. Differ by ... 2 Units PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 30
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.84 From the CIF: _reflns_number_total 2108 Count of symmetry unique reflns 2155 Completeness (_total/calc) 97.82% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 3 PLAT154_ALERT_1_G The su's on the Cell Angles are Equal (x 10000) 3000 Deg.
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 8 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 5 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
To the suspension of anhydrous potassium carbonate (1.635 g,12.5 mmol) and 4-(4-aminophenoxy)-N-methylpicolinamide (1.22 g, 5 mmol) in 11.4 ml THF was added dropwise 3-methoxybenzoyl chloride(1.28 g,7.5 mmol). After being stirred at room temperature for 2 h, the mixture was extracted with 90 ml EA and 30 ml water for three times and the combined organic layers were dried over anhydrous Na2SO4. Then the solution was concentrated under vacuum, and the residue was recrystallized from ethanol to give the title compound. Crystals suitable for X-ray analysis were obtained by slow evaporation from a solution of ethanol.
The two H atoms of N1 and N3 were located in a difference map and refined isotropically. The reminaing H atoms were positioned geometrically (C—H = 0.95–0.98 Å) and refined using a riding model, with Uiso(H) = 1.2–1.5Ueq(C). In the final stages of refinement, Friedel-pair reflections were merged.
Sorafenib is of great importance owing to its antitumor properties (Khire et al., 2004; Dominguez et al., 2007). The title compound, as one of its derivatives, possessed even better in vitro anticancer activity against both two tumor cell lines (HCT116 and HEPG2). As a potent antitumor drug, we report here its crystal structure.
In the title molecule, C21H19N3O4, (Fig.1), the phenyl ring makes dihedral angles of 78.54 (6)° and 75.30 (6)° with the pyridine ring and the 3-methoxyphenyl ring, respectively. In the crystal structure, intermolecular N—H···O hydrogen-bonding interactions between the N—H and O atoms of 3-methoxyphenyl ring and carbonyl groups of the amide functionalities form an infinite three-dimensional structure (Table 1 and Fig. 2).
For related compounds and their biological activity, see: Khire et al. (2004); Dominguez et al. (2007).
Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: CrystalClear (Rigaku/MSC, 2005); data reduction: CrystalClear (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: PLATON (Spek, 2009).
Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. | |
Fig. 2. The cell packing of the title compound. |
C21H19N3O4 | Z = 1 |
Mr = 377.39 | F(000) = 198 |
Triclinic, P1 | Dx = 1.386 Mg m−3 |
a = 5.0915 (10) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.3251 (17) Å | Cell parameters from 1652 reflections |
c = 11.611 (2) Å | θ = 2.7–27.8° |
α = 71.29 (3)° | µ = 0.10 mm−1 |
β = 87.74 (3)° | T = 113 K |
γ = 76.10 (3)° | Block, colourless |
V = 452.14 (16) Å3 | 0.34 × 0.29 × 0.19 mm |
Rigaku Saturn CCD area-detector diffractometer | 2108 independent reflections |
Radiation source: rotating anode | 1811 reflections with I > 2σ(I) |
Confocal monochromator | Rint = 0.026 |
Detector resolution: 7.31 pixels mm-1 | θmax = 27.8°, θmin = 2.7° |
ω and φ scans | h = −6→4 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −10→10 |
Tmin = 0.968, Tmax = 0.982 | l = −14→15 |
3733 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: mixed |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0481P)2] where P = (Fo2 + 2Fc2)/3 |
2108 reflections | (Δ/σ)max < 0.001 |
263 parameters | Δρmax = 0.22 e Å−3 |
3 restraints | Δρmin = −0.24 e Å−3 |
C21H19N3O4 | γ = 76.10 (3)° |
Mr = 377.39 | V = 452.14 (16) Å3 |
Triclinic, P1 | Z = 1 |
a = 5.0915 (10) Å | Mo Kα radiation |
b = 8.3251 (17) Å | µ = 0.10 mm−1 |
c = 11.611 (2) Å | T = 113 K |
α = 71.29 (3)° | 0.34 × 0.29 × 0.19 mm |
β = 87.74 (3)° |
Rigaku Saturn CCD area-detector diffractometer | 2108 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 1811 reflections with I > 2σ(I) |
Tmin = 0.968, Tmax = 0.982 | Rint = 0.026 |
3733 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 3 restraints |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | Δρmax = 0.22 e Å−3 |
2108 reflections | Δρmin = −0.24 e Å−3 |
263 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.3679 (3) | 1.5504 (2) | 0.23318 (15) | 0.0212 (4) | |
O2 | −0.1469 (3) | 0.9491 (2) | 0.56055 (17) | 0.0249 (4) | |
O3 | 0.4394 (3) | 0.1895 (2) | 0.81518 (15) | 0.0220 (4) | |
O4 | 1.1345 (3) | 0.2263 (2) | 1.10678 (16) | 0.0230 (4) | |
N1 | 0.3007 (3) | 0.9089 (2) | 0.60459 (17) | 0.0154 (4) | |
H1N | 0.443 (6) | 0.954 (4) | 0.579 (3) | 0.031 (8)* | |
N2 | 1.0377 (4) | −0.1617 (2) | 1.06587 (18) | 0.0197 (4) | |
N3 | 1.3326 (4) | −0.0601 (3) | 1.20340 (18) | 0.0202 (4) | |
H3N | 1.353 (6) | −0.166 (4) | 1.208 (3) | 0.025 (7)* | |
C1 | 0.0404 (4) | 1.1969 (3) | 0.48677 (19) | 0.0138 (4) | |
C2 | −0.1555 (4) | 1.2811 (3) | 0.3920 (2) | 0.0157 (4) | |
H2 | −0.2683 | 1.2179 | 0.3713 | 0.019* | |
C3 | −0.1849 (4) | 1.4569 (3) | 0.3282 (2) | 0.0166 (5) | |
C4 | −0.0230 (4) | 1.5503 (3) | 0.3610 (2) | 0.0186 (5) | |
H4 | −0.0441 | 1.6711 | 0.3181 | 0.022* | |
C5 | 0.1675 (4) | 1.4670 (3) | 0.4559 (2) | 0.0196 (5) | |
H5 | 0.2754 | 1.5316 | 0.4784 | 0.024* | |
C6 | 0.2036 (4) | 1.2891 (3) | 0.5190 (2) | 0.0167 (5) | |
H6 | 0.3377 | 1.2318 | 0.5830 | 0.020* | |
C7 | −0.4855 (5) | 1.4516 (3) | 0.1769 (2) | 0.0240 (5) | |
H7A | −0.6035 | 1.3902 | 0.2340 | 0.036* | |
H7B | −0.3410 | 1.3663 | 0.1549 | 0.036* | |
H7C | −0.5919 | 1.5310 | 0.1034 | 0.036* | |
C8 | 0.0553 (4) | 1.0091 (3) | 0.5533 (2) | 0.0163 (4) | |
C9 | 0.3486 (4) | 0.7259 (3) | 0.66625 (19) | 0.0145 (4) | |
C10 | 0.5761 (4) | 0.6131 (3) | 0.6406 (2) | 0.0162 (4) | |
H10 | 0.7046 | 0.6589 | 0.5865 | 0.019* | |
C11 | 0.6152 (4) | 0.4336 (3) | 0.6942 (2) | 0.0190 (5) | |
H11 | 0.7689 | 0.3560 | 0.6763 | 0.023* | |
C12 | 0.4271 (4) | 0.3690 (3) | 0.7740 (2) | 0.0174 (5) | |
C13 | 0.2105 (4) | 0.4795 (3) | 0.8055 (2) | 0.0213 (5) | |
H13 | 0.0892 | 0.4336 | 0.8640 | 0.026* | |
C14 | 0.1710 (4) | 0.6586 (3) | 0.7512 (2) | 0.0204 (5) | |
H14 | 0.0215 | 0.7356 | 0.7723 | 0.025* | |
C15 | 0.6403 (4) | 0.0792 (3) | 0.8978 (2) | 0.0169 (5) | |
C16 | 0.6760 (5) | −0.0977 (3) | 0.9182 (2) | 0.0194 (5) | |
H16 | 0.5661 | −0.1394 | 0.8757 | 0.023* | |
C17 | 0.8763 (5) | −0.2126 (3) | 1.0024 (2) | 0.0210 (5) | |
H17 | 0.9012 | −0.3341 | 1.0161 | 0.025* | |
C18 | 0.9936 (4) | 0.0107 (3) | 1.0450 (2) | 0.0163 (4) | |
C19 | 0.8000 (4) | 0.1369 (3) | 0.9625 (2) | 0.0161 (4) | |
H19 | 0.7777 | 0.2578 | 0.9509 | 0.019* | |
C20 | 1.1623 (4) | 0.0692 (3) | 1.1206 (2) | 0.0172 (5) | |
C21 | 1.4960 (5) | −0.0250 (3) | 1.2878 (2) | 0.0220 (5) | |
H21A | 1.3916 | 0.0733 | 1.3122 | 0.033* | |
H21B | 1.6598 | 0.0043 | 1.2484 | 0.033* | |
H21C | 1.5470 | −0.1288 | 1.3599 | 0.033* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0201 (8) | 0.0162 (9) | 0.0232 (9) | −0.0018 (6) | −0.0079 (6) | −0.0016 (7) |
O2 | 0.0138 (7) | 0.0175 (8) | 0.0376 (10) | −0.0063 (6) | −0.0052 (7) | 0.0017 (7) |
O3 | 0.0228 (8) | 0.0134 (8) | 0.0260 (9) | −0.0053 (6) | −0.0103 (7) | 0.0010 (7) |
O4 | 0.0243 (8) | 0.0170 (9) | 0.0262 (9) | −0.0024 (6) | −0.0048 (7) | −0.0060 (7) |
N1 | 0.0118 (8) | 0.0135 (9) | 0.0184 (9) | −0.0030 (7) | 0.0003 (7) | −0.0017 (8) |
N2 | 0.0229 (10) | 0.0139 (10) | 0.0209 (10) | −0.0021 (7) | −0.0008 (8) | −0.0053 (8) |
N3 | 0.0245 (10) | 0.0165 (11) | 0.0183 (10) | −0.0019 (8) | −0.0045 (8) | −0.0054 (8) |
C1 | 0.0115 (9) | 0.0125 (10) | 0.0163 (11) | −0.0010 (7) | 0.0023 (8) | −0.0047 (8) |
C2 | 0.0125 (9) | 0.0155 (11) | 0.0195 (11) | −0.0034 (8) | 0.0000 (8) | −0.0059 (9) |
C3 | 0.0138 (10) | 0.0149 (11) | 0.0180 (11) | −0.0004 (8) | −0.0001 (8) | −0.0032 (9) |
C4 | 0.0187 (11) | 0.0121 (11) | 0.0227 (12) | −0.0029 (8) | 0.0017 (9) | −0.0032 (9) |
C5 | 0.0179 (11) | 0.0174 (12) | 0.0260 (13) | −0.0069 (8) | 0.0007 (9) | −0.0085 (10) |
C6 | 0.0136 (10) | 0.0171 (12) | 0.0189 (11) | −0.0029 (8) | −0.0014 (8) | −0.0056 (9) |
C7 | 0.0237 (12) | 0.0198 (12) | 0.0272 (12) | 0.0009 (9) | −0.0095 (10) | −0.0088 (10) |
C8 | 0.0139 (10) | 0.0159 (11) | 0.0174 (11) | −0.0024 (8) | 0.0000 (8) | −0.0038 (9) |
C9 | 0.0134 (9) | 0.0137 (11) | 0.0142 (10) | −0.0016 (8) | −0.0038 (8) | −0.0021 (8) |
C10 | 0.0129 (10) | 0.0169 (11) | 0.0179 (11) | −0.0037 (8) | 0.0012 (8) | −0.0043 (9) |
C11 | 0.0168 (10) | 0.0166 (11) | 0.0217 (11) | −0.0005 (8) | −0.0025 (9) | −0.0057 (9) |
C12 | 0.0200 (11) | 0.0130 (11) | 0.0164 (11) | −0.0055 (8) | −0.0073 (9) | 0.0010 (9) |
C13 | 0.0188 (11) | 0.0206 (12) | 0.0206 (12) | −0.0061 (8) | 0.0018 (9) | −0.0006 (9) |
C14 | 0.0177 (11) | 0.0209 (12) | 0.0185 (11) | −0.0017 (8) | 0.0027 (8) | −0.0031 (9) |
C15 | 0.0168 (10) | 0.0147 (11) | 0.0146 (11) | −0.0018 (8) | −0.0010 (8) | 0.0002 (9) |
C16 | 0.0229 (11) | 0.0179 (12) | 0.0190 (11) | −0.0069 (9) | 0.0001 (8) | −0.0064 (9) |
C17 | 0.0276 (12) | 0.0116 (10) | 0.0220 (12) | −0.0034 (8) | 0.0005 (9) | −0.0040 (9) |
C18 | 0.0182 (11) | 0.0152 (11) | 0.0143 (10) | −0.0053 (8) | 0.0034 (8) | −0.0027 (9) |
C19 | 0.0189 (10) | 0.0131 (10) | 0.0147 (10) | −0.0043 (8) | 0.0014 (8) | −0.0021 (9) |
C20 | 0.0155 (10) | 0.0195 (12) | 0.0162 (11) | −0.0034 (8) | 0.0022 (8) | −0.0060 (9) |
C21 | 0.0206 (11) | 0.0253 (13) | 0.0203 (11) | −0.0024 (9) | −0.0031 (9) | −0.0091 (10) |
O1—C3 | 1.369 (3) | C7—H7A | 0.9800 |
O1—C7 | 1.440 (3) | C7—H7B | 0.9800 |
O2—C8 | 1.237 (3) | C7—H7C | 0.9800 |
O3—C15 | 1.368 (3) | C9—C14 | 1.387 (3) |
O3—C12 | 1.402 (3) | C9—C10 | 1.394 (3) |
O4—C20 | 1.239 (3) | C10—C11 | 1.389 (3) |
N1—C8 | 1.360 (3) | C10—H10 | 0.9500 |
N1—C9 | 1.424 (3) | C11—C12 | 1.387 (3) |
N1—H1N | 0.89 (3) | C11—H11 | 0.9500 |
N2—C18 | 1.340 (3) | C12—C13 | 1.376 (3) |
N2—C17 | 1.346 (3) | C13—C14 | 1.387 (3) |
N3—C20 | 1.337 (3) | C13—H13 | 0.9500 |
N3—C21 | 1.450 (3) | C14—H14 | 0.9500 |
N3—H3N | 0.85 (3) | C15—C16 | 1.382 (3) |
C1—C6 | 1.391 (3) | C15—C19 | 1.387 (3) |
C1—C2 | 1.397 (3) | C16—C17 | 1.386 (3) |
C1—C8 | 1.491 (3) | C16—H16 | 0.9500 |
C2—C3 | 1.386 (3) | C17—H17 | 0.9500 |
C2—H2 | 0.9500 | C18—C19 | 1.387 (3) |
C3—C4 | 1.397 (3) | C18—C20 | 1.510 (3) |
C4—C5 | 1.380 (3) | C19—H19 | 0.9500 |
C4—H4 | 0.9500 | C21—H21A | 0.9800 |
C5—C6 | 1.396 (3) | C21—H21B | 0.9800 |
C5—H5 | 0.9500 | C21—H21C | 0.9800 |
C6—H6 | 0.9500 | ||
C3—O1—C7 | 116.81 (17) | C11—C10—C9 | 120.1 (2) |
C15—O3—C12 | 119.17 (17) | C11—C10—H10 | 120.0 |
C8—N1—C9 | 122.98 (18) | C9—C10—H10 | 120.0 |
C8—N1—H1N | 116 (2) | C12—C11—C10 | 119.2 (2) |
C9—N1—H1N | 118 (2) | C12—C11—H11 | 120.4 |
C18—N2—C17 | 116.25 (18) | C10—C11—H11 | 120.4 |
C20—N3—C21 | 121.4 (2) | C13—C12—C11 | 121.2 (2) |
C20—N3—H3N | 122 (2) | C13—C12—O3 | 118.26 (19) |
C21—N3—H3N | 117 (2) | C11—C12—O3 | 120.3 (2) |
C6—C1—C2 | 120.42 (19) | C12—C13—C14 | 119.4 (2) |
C6—C1—C8 | 122.61 (19) | C12—C13—H13 | 120.3 |
C2—C1—C8 | 116.91 (19) | C14—C13—H13 | 120.3 |
C3—C2—C1 | 119.96 (19) | C13—C14—C9 | 120.4 (2) |
C3—C2—H2 | 120.0 | C13—C14—H14 | 119.8 |
C1—C2—H2 | 120.0 | C9—C14—H14 | 119.8 |
O1—C3—C2 | 124.4 (2) | O3—C15—C16 | 116.9 (2) |
O1—C3—C4 | 115.84 (19) | O3—C15—C19 | 123.2 (2) |
C2—C3—C4 | 119.77 (19) | C16—C15—C19 | 119.86 (19) |
C5—C4—C3 | 120.0 (2) | C15—C16—C17 | 118.2 (2) |
C5—C4—H4 | 120.0 | C15—C16—H16 | 120.9 |
C3—C4—H4 | 120.0 | C17—C16—H16 | 120.9 |
C4—C5—C6 | 120.8 (2) | N2—C17—C16 | 123.7 (2) |
C4—C5—H5 | 119.6 | N2—C17—H17 | 118.1 |
C6—C5—H5 | 119.6 | C16—C17—H17 | 118.1 |
C1—C6—C5 | 119.04 (19) | N2—C18—C19 | 124.8 (2) |
C1—C6—H6 | 120.5 | N2—C18—C20 | 116.87 (18) |
C5—C6—H6 | 120.5 | C19—C18—C20 | 118.32 (19) |
O1—C7—H7A | 109.5 | C18—C19—C15 | 117.2 (2) |
O1—C7—H7B | 109.5 | C18—C19—H19 | 121.4 |
H7A—C7—H7B | 109.5 | C15—C19—H19 | 121.4 |
O1—C7—H7C | 109.5 | O4—C20—N3 | 124.1 (2) |
H7A—C7—H7C | 109.5 | O4—C20—C18 | 120.93 (19) |
H7B—C7—H7C | 109.5 | N3—C20—C18 | 115.0 (2) |
O2—C8—N1 | 122.4 (2) | N3—C21—H21A | 109.5 |
O2—C8—C1 | 120.97 (19) | N3—C21—H21B | 109.5 |
N1—C8—C1 | 116.65 (19) | H21A—C21—H21B | 109.5 |
C14—C9—C10 | 119.6 (2) | N3—C21—H21C | 109.5 |
C14—C9—N1 | 120.77 (18) | H21A—C21—H21C | 109.5 |
C10—C9—N1 | 119.64 (19) | H21B—C21—H21C | 109.5 |
C6—C1—C2—C3 | 1.0 (3) | C15—O3—C12—C13 | −113.2 (2) |
C8—C1—C2—C3 | 178.42 (18) | C15—O3—C12—C11 | 72.9 (3) |
C7—O1—C3—C2 | −16.6 (3) | C11—C12—C13—C14 | 3.7 (3) |
C7—O1—C3—C4 | 164.13 (19) | O3—C12—C13—C14 | −170.2 (2) |
C1—C2—C3—O1 | 179.13 (19) | C12—C13—C14—C9 | −0.3 (3) |
C1—C2—C3—C4 | −1.6 (3) | C10—C9—C14—C13 | −3.6 (3) |
O1—C3—C4—C5 | −180.0 (2) | N1—C9—C14—C13 | 176.2 (2) |
C2—C3—C4—C5 | 0.7 (3) | C12—O3—C15—C16 | −168.06 (19) |
C3—C4—C5—C6 | 0.8 (3) | C12—O3—C15—C19 | 13.8 (3) |
C2—C1—C6—C5 | 0.5 (3) | O3—C15—C16—C17 | −179.4 (2) |
C8—C1—C6—C5 | −176.77 (19) | C19—C15—C16—C17 | −1.1 (3) |
C4—C5—C6—C1 | −1.4 (3) | C18—N2—C17—C16 | 0.8 (3) |
C9—N1—C8—O2 | 2.7 (3) | C15—C16—C17—N2 | 0.3 (4) |
C9—N1—C8—C1 | −177.13 (19) | C17—N2—C18—C19 | −1.2 (3) |
C6—C1—C8—O2 | 149.6 (2) | C17—N2—C18—C20 | 176.7 (2) |
C2—C1—C8—O2 | −27.7 (3) | N2—C18—C19—C15 | 0.3 (3) |
C6—C1—C8—N1 | −30.6 (3) | C20—C18—C19—C15 | −177.45 (19) |
C2—C1—C8—N1 | 152.10 (19) | O3—C15—C19—C18 | 178.95 (19) |
C8—N1—C9—C14 | −46.8 (3) | C16—C15—C19—C18 | 0.8 (3) |
C8—N1—C9—C10 | 133.0 (2) | C21—N3—C20—O4 | 1.9 (3) |
C14—C9—C10—C11 | 4.1 (3) | C21—N3—C20—C18 | −176.19 (19) |
N1—C9—C10—C11 | −175.67 (19) | N2—C18—C20—O4 | 179.9 (2) |
C9—C10—C11—C12 | −0.7 (3) | C19—C18—C20—O4 | −2.2 (3) |
C10—C11—C12—C13 | −3.2 (3) | N2—C18—C20—N3 | −2.0 (3) |
C10—C11—C12—O3 | 170.56 (18) | C19—C18—C20—N3 | 175.94 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O2i | 0.89 (3) | 2.08 (3) | 2.918 (2) | 155 (3) |
N3—H3N···O1ii | 0.85 (3) | 2.38 (3) | 3.148 (3) | 151 (2) |
N3—H3N···N2 | 0.85 (3) | 2.33 (3) | 2.681 (3) | 105 (2) |
C7—H7B···O4iii | 0.98 | 2.55 | 3.475 (3) | 158 |
C14—H14···O2 | 0.95 | 2.56 | 2.887 (3) | 100 |
Symmetry codes: (i) x+1, y, z; (ii) x+2, y−2, z+1; (iii) x−1, y+1, z−1. |
Experimental details
Crystal data | |
Chemical formula | C21H19N3O4 |
Mr | 377.39 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 113 |
a, b, c (Å) | 5.0915 (10), 8.3251 (17), 11.611 (2) |
α, β, γ (°) | 71.29 (3), 87.74 (3), 76.10 (3) |
V (Å3) | 452.14 (16) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.34 × 0.29 × 0.19 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area-detector |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.968, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3733, 2108, 1811 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.657 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.085, 1.10 |
No. of reflections | 2108 |
No. of parameters | 263 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.24 |
Computer programs: CrystalClear (Rigaku/MSC, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O2i | 0.89 (3) | 2.08 (3) | 2.918 (2) | 155 (3) |
N3—H3N···O1ii | 0.85 (3) | 2.38 (3) | 3.148 (3) | 151 (2) |
N3—H3N···N2 | 0.85 (3) | 2.33 (3) | 2.681 (3) | 105 (2) |
C7—H7B···O4iii | 0.98 | 2.55 | 3.475 (3) | 158.0 |
C14—H14···O2 | 0.95 | 2.56 | 2.887 (3) | 100.2 |
Symmetry codes: (i) x+1, y, z; (ii) x+2, y−2, z+1; (iii) x−1, y+1, z−1. |
Sorafenib is of great importance owing to its antitumor properties (Khire et al., 2004; Dominguez et al., 2007). The title compound, as one of its derivatives, possessed even better in vitro anticancer activity against both two tumor cell lines (HCT116 and HEPG2). As a potent antitumor drug, we report here its crystal structure.
In the title molecule, C21H19N3O4, (Fig.1), the phenyl ring makes dihedral angles of 78.54 (6)° and 75.30 (6)° with the pyridine ring and the 3-methoxyphenyl ring, respectively. In the crystal structure, intermolecular N—H···O hydrogen-bonding interactions between the N—H and O atoms of 3-methoxyphenyl ring and carbonyl groups of the amide functionalities form an infinite three-dimensional structure (Table 1 and Fig. 2).