Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810006136/om2320sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536810006136/om2320Isup2.hkl |
CCDC reference: 770051
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.003 Å
- R factor = 0.034
- wR factor = 0.074
- Data-to-parameter ratio = 16.1
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 6 PLAT042_ALERT_1_C Calc. and Reported MoietyFormula Strings Differ ? PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 15
Alert level G PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature 293 K PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 2
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A mixture of 2-phenylimidazole (0.5 mmol), hydrochloric acid (0.5 mmol) and H2O (30 mmol) was mixed. After two weeks, colorless crystals were obtained at room temperature (22% yield).
All H atoms on C and N atoms were positioned geometrically (N—H = 0.86 Å and C—H = 0.93 Å) and refined as riding, with Uiso(H)=1.2Ueq(carrier). The water H-atom was located in a difference Fourier map, and was refined freely.
Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell refinement: CrysAlis CCD (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Fig. 1. The structure of the title compound showing the atomic numbering scheme and displacement ellipsoids at the 30% probability level. |
C9H9N2+·Cl−·H2O | Z = 2 |
Mr = 198.65 | F(000) = 208 |
Triclinic, P1 | Dx = 1.320 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.2751 (10) Å | Cell parameters from 2030 reflections |
b = 8.8816 (13) Å | θ = 2.5–26.4° |
c = 9.3228 (10) Å | µ = 0.34 mm−1 |
α = 105.486 (11)° | T = 293 K |
β = 106.516 (11)° | Block, colorless |
γ = 109.337 (13)° | 0.31 × 0.24 × 0.22 mm |
V = 499.65 (15) Å3 |
Oxford Diffraction Gemini R Ultra diffractometer | 2030 independent reflections |
Radiation source: fine-focus sealed tube | 1198 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
Detector resolution: 10.0 pixels mm-1 | θmax = 26.4°, θmin = 2.5° |
ω scan | h = −6→9 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006) | k = −10→11 |
Tmin = 0.52, Tmax = 0.78 | l = −11→9 |
3460 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.074 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.81 | w = 1/[σ2(Fo2) + (0.0394P)2] where P = (Fo2 + 2Fc2)/3 |
2030 reflections | (Δ/σ)max < 0.001 |
126 parameters | Δρmax = 0.16 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C9H9N2+·Cl−·H2O | γ = 109.337 (13)° |
Mr = 198.65 | V = 499.65 (15) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.2751 (10) Å | Mo Kα radiation |
b = 8.8816 (13) Å | µ = 0.34 mm−1 |
c = 9.3228 (10) Å | T = 293 K |
α = 105.486 (11)° | 0.31 × 0.24 × 0.22 mm |
β = 106.516 (11)° |
Oxford Diffraction Gemini R Ultra diffractometer | 2030 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006) | 1198 reflections with I > 2σ(I) |
Tmin = 0.52, Tmax = 0.78 | Rint = 0.025 |
3460 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.074 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.81 | Δρmax = 0.16 e Å−3 |
2030 reflections | Δρmin = −0.25 e Å−3 |
126 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.4640 (3) | 0.2399 (2) | 0.3466 (2) | 0.0617 (5) | |
H1A | 0.5140 | 0.2530 | 0.4549 | 0.074* | |
C2 | 0.4744 (3) | 0.3668 (2) | 0.2929 (2) | 0.0653 (6) | |
H2A | 0.5322 | 0.4849 | 0.3570 | 0.078* | |
C3 | 0.3188 (3) | 0.1197 (2) | 0.0774 (2) | 0.0437 (4) | |
C4 | 0.2201 (3) | −0.0061 (2) | −0.0909 (2) | 0.0441 (4) | |
C5 | 0.1124 (3) | −0.1827 (2) | −0.1299 (2) | 0.0548 (5) | |
H5 | 0.1007 | −0.2215 | −0.0482 | 0.066* | |
C6 | 0.0231 (3) | −0.3006 (2) | −0.2889 (2) | 0.0665 (6) | |
H6 | −0.0509 | −0.4186 | −0.3146 | 0.080* | |
C7 | 0.0428 (3) | −0.2445 (3) | −0.4101 (3) | 0.0693 (6) | |
H7 | −0.0167 | −0.3247 | −0.5174 | 0.083* | |
C8 | 0.1500 (3) | −0.0708 (3) | −0.3728 (2) | 0.0661 (6) | |
H8 | 0.1634 | −0.0336 | −0.4551 | 0.079* | |
C9 | 0.2382 (3) | 0.0496 (2) | −0.2145 (2) | 0.0550 (5) | |
H9 | 0.3095 | 0.1676 | −0.1903 | 0.066* | |
N1 | 0.3844 (2) | 0.29054 (16) | 0.12684 (18) | 0.0543 (4) | |
H1 | 0.3719 | 0.3448 | 0.0635 | 0.065* | |
N2 | 0.3658 (2) | 0.08756 (17) | 0.21156 (17) | 0.0504 (4) | |
H2 | 0.3385 | −0.0138 | 0.2129 | 0.060* | |
O1W | 0.2454 (3) | 0.4594 (2) | −0.0598 (3) | 0.0680 (4) | |
HW11 | 0.249 (4) | 0.538 (3) | 0.019 (3) | 0.114 (11)* | |
HW12 | 0.107 (5) | 0.407 (3) | −0.117 (3) | 0.122 (11)* | |
Cl1 | 0.26211 (8) | 0.73220 (5) | 0.25005 (5) | 0.0634 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0669 (14) | 0.0637 (12) | 0.0518 (12) | 0.0312 (10) | 0.0177 (10) | 0.0234 (10) |
C2 | 0.0746 (14) | 0.0527 (11) | 0.0572 (14) | 0.0266 (10) | 0.0189 (11) | 0.0164 (9) |
C3 | 0.0437 (10) | 0.0496 (10) | 0.0537 (11) | 0.0267 (8) | 0.0245 (8) | 0.0305 (8) |
C4 | 0.0444 (10) | 0.0503 (10) | 0.0551 (11) | 0.0291 (8) | 0.0245 (9) | 0.0311 (8) |
C5 | 0.0648 (13) | 0.0558 (11) | 0.0580 (12) | 0.0308 (10) | 0.0284 (10) | 0.0340 (9) |
C6 | 0.0788 (15) | 0.0552 (11) | 0.0645 (14) | 0.0289 (10) | 0.0271 (11) | 0.0255 (10) |
C7 | 0.0787 (15) | 0.0748 (14) | 0.0579 (13) | 0.0407 (12) | 0.0277 (11) | 0.0229 (10) |
C8 | 0.0818 (15) | 0.0869 (14) | 0.0602 (14) | 0.0500 (12) | 0.0389 (11) | 0.0459 (11) |
C9 | 0.0628 (12) | 0.0587 (11) | 0.0663 (13) | 0.0335 (10) | 0.0350 (10) | 0.0397 (10) |
N1 | 0.0650 (10) | 0.0474 (9) | 0.0635 (11) | 0.0286 (7) | 0.0295 (8) | 0.0324 (7) |
N2 | 0.0566 (10) | 0.0501 (8) | 0.0560 (10) | 0.0293 (7) | 0.0218 (8) | 0.0316 (7) |
O1W | 0.0656 (12) | 0.0655 (9) | 0.0919 (12) | 0.0366 (8) | 0.0345 (9) | 0.0460 (9) |
Cl1 | 0.0715 (3) | 0.0529 (3) | 0.0548 (3) | 0.0174 (2) | 0.0143 (2) | 0.0311 (2) |
C1—C2 | 1.339 (2) | C6—C7 | 1.375 (3) |
C1—N2 | 1.366 (2) | C6—H6 | 0.9300 |
C1—H1A | 0.9300 | C7—C8 | 1.368 (3) |
C2—N1 | 1.362 (2) | C7—H7 | 0.9300 |
C2—H2A | 0.9300 | C8—C9 | 1.378 (3) |
C3—N1 | 1.3282 (19) | C8—H8 | 0.9300 |
C3—N2 | 1.332 (2) | C9—H9 | 0.9300 |
C3—C4 | 1.455 (2) | N1—H1 | 0.8600 |
C4—C5 | 1.388 (2) | N2—H2 | 0.8600 |
C4—C9 | 1.392 (2) | O1W—HW11 | 0.86 (3) |
C5—C6 | 1.374 (3) | O1W—HW12 | 0.88 (3) |
C5—H5 | 0.9300 | ||
C2—C1—N2 | 106.67 (17) | C7—C6—H6 | 119.9 |
C2—C1—H1A | 126.7 | C8—C7—C6 | 120.01 (19) |
N2—C1—H1A | 126.7 | C8—C7—H7 | 120.0 |
C1—C2—N1 | 107.20 (16) | C6—C7—H7 | 120.0 |
C1—C2—H2A | 126.4 | C7—C8—C9 | 120.68 (17) |
N1—C2—H2A | 126.4 | C7—C8—H8 | 119.7 |
N1—C3—N2 | 106.63 (14) | C9—C8—H8 | 119.7 |
N1—C3—C4 | 126.29 (15) | C8—C9—C4 | 119.67 (16) |
N2—C3—C4 | 127.06 (15) | C8—C9—H9 | 120.2 |
C5—C4—C9 | 119.14 (16) | C4—C9—H9 | 120.2 |
C5—C4—C3 | 120.82 (15) | C3—N1—C2 | 109.75 (14) |
C9—C4—C3 | 120.01 (15) | C3—N1—H1 | 125.1 |
C6—C5—C4 | 120.30 (16) | C2—N1—H1 | 125.1 |
C6—C5—H5 | 119.8 | C3—N2—C1 | 109.74 (14) |
C4—C5—H5 | 119.8 | C3—N2—H2 | 125.1 |
C5—C6—C7 | 120.18 (18) | C1—N2—H2 | 125.1 |
C5—C6—H6 | 119.9 | HW11—O1W—HW12 | 97 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1W | 0.86 | 1.96 | 2.774 (2) | 157 |
N2—H2···Cl1i | 0.86 | 2.28 | 3.1371 (14) | 172 |
O1W—HW11···Cl1 | 0.86 (3) | 2.33 (3) | 3.177 (2) | 174 (2) |
O1W—HW12···Cl1ii | 0.88 (3) | 2.32 (3) | 3.190 (2) | 176 (2) |
Symmetry codes: (i) x, y−1, z; (ii) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C9H9N2+·Cl−·H2O |
Mr | 198.65 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.2751 (10), 8.8816 (13), 9.3228 (10) |
α, β, γ (°) | 105.486 (11), 106.516 (11), 109.337 (13) |
V (Å3) | 499.65 (15) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.34 |
Crystal size (mm) | 0.31 × 0.24 × 0.22 |
Data collection | |
Diffractometer | Oxford Diffraction Gemini R Ultra diffractometer |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2006) |
Tmin, Tmax | 0.52, 0.78 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3460, 2030, 1198 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.626 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.074, 0.81 |
No. of reflections | 2030 |
No. of parameters | 126 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.16, −0.25 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1W | 0.86 | 1.96 | 2.774 (2) | 157.1 |
N2—H2···Cl1i | 0.86 | 2.28 | 3.1371 (14) | 172.0 |
O1W—HW11···Cl1 | 0.86 (3) | 2.33 (3) | 3.177 (2) | 174 (2) |
O1W—HW12···Cl1ii | 0.88 (3) | 2.32 (3) | 3.190 (2) | 176 (2) |
Symmetry codes: (i) x, y−1, z; (ii) −x, −y+1, −z. |
The 2-phenylimidazolium nitrate structure has been reported as a hemihydrate (Zhang et al., 2007) and as a hydrate (Xia et al., 2009). Here we report the synthesis and structure of the chloride hydrate, namely, C9H11ClN2O.
The asymmetric unit of the title compound contains one 2-phenylimidazolium cation, one chloride anion and one water molecule (Fig. 1). There are O—H···Cl, N—H···O and N—H···Cl H-bonding interactions in the structure (Table I).