research papers
The dipeptide Gly-L-Ser was crystallized as part of a study on hydrogen-bonding patterns in the structures of dipeptides. Hydrogen-bond donors and acceptors have been assigned ranks (1 is best, 2 is next best etc.), and the observed hydrogen-bond connectivity is compared with the hypothetical pattern in which the rank n donor associates with the rank n acceptor (n = 1, 2, . . .), and with the pattern observed in the retroanalogue L-Ser-Gly, which contains the same functional groups. Crystallization of the title compound produced very bulky crystals. Rather than reducing the size of one of these before data collection, three data sets with different exposure times were collected with a Siemens SMART CCD diffractometer on a very large specimen (2.2 × 2.0 × 0.8 mm). The crystal was subsequently shaped into a 0.30 mm-diameter sphere for collection of two additional data sets. The discussion of the refinement results focus on the effect of absorption correction for the various data sets, and a comparison of geometrical and thermal parameters. One advantage of using a large crystal, the great speed with which data can be obtained, has been exemplified by collection of a complete data set of good quality in less than 25 min.
Supporting information
CCDC references: 138583; 138584; 138585; 138586; 138587; 138588; 138589
Computing details top
For all compounds, data collection: SMART (Siemens, 1995); cell refinement: SAINT (Siemens, 1995); data reduction: SAINT (Siemens, 1995); program(s) used to solve structure: SHELXTL (Sheldrick, 1997); program(s) used to refine structure: SHELXTL (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 1997); software used to prepare material for publication: SHELXTL (Sheldrick, 1997).
(glyser-1) Glycyl-L-serine top
Crystal data top
C5H10N2O4 | Dx = 1.549 Mg m−3 |
Mr = 162.15 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 8192 reflections |
a = 7.275 (2) Å | θ = 2–35° |
b = 9.097 (3) Å | µ = 0.13 mm−1 |
c = 10.507 (3) Å | T = 150 K |
V = 695.4 (4) Å3 | Distorted bipyramid, colourless |
Z = 4 | 2.20 × 2.00 × 0.80 mm |
F(000) = 344 |
Data collection top
Siemens SMART CCD diffractometer | 8225 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.100 |
Graphite monochromator | θmax = 55.1°, θmin = 3.0° |
Detector resolution: 8.3 pixels mm-1 | h = −16→16 |
Sets of exposures each taken over 0.6° ω rotation scans | k = −17→20 |
28701 measured reflections | l = −20→24 |
8814 independent reflections |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.043 | All H-atom parameters refined |
wR(F2) = 0.119 | w = 1/[σ2(Fo2) + (0.0484P)2 + 0.0508P] where P = (Fo2 + 2Fc2)/3 |
S = 1.13 | (Δ/σ)max = 0.002 |
8814 reflections | Δρmax = 0.48 e Å−3 |
141 parameters | Δρmin = −0.43 e Å−3 |
0 restraints | Extinction correction: SHELXTL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.082 (11) |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.41578 (5) | 0.21349 (4) | 0.80985 (3) | 0.01279 (5) | |
O2 | 0.45819 (7) | 0.53829 (5) | 0.44769 (4) | 0.01622 (6) | |
O3 | 0.28693 (8) | 0.35985 (6) | 0.35853 (4) | 0.01935 (7) | |
O4 | 0.10419 (6) | 0.56311 (5) | 0.63268 (4) | 0.01619 (6) | |
H5 | 0.131 (3) | 0.591 (2) | 0.7085 (19) | 0.028 (4)* | |
N1 | 0.66989 (6) | 0.32445 (5) | 0.97896 (4) | 0.01295 (5) | |
H1 | 0.782 (3) | 0.348 (2) | 1.0055 (17) | 0.024 (4)* | |
H2 | 0.575 (3) | 0.368 (2) | 1.0317 (17) | 0.027 (4)* | |
H3 | 0.652 (2) | 0.2338 (19) | 0.9744 (15) | 0.018 (3)* | |
N2 | 0.44818 (6) | 0.40817 (4) | 0.67531 (3) | 0.01171 (5) | |
H4 | 0.492 (2) | 0.488 (2) | 0.6642 (16) | 0.018 (3)* | |
C1 | 0.65621 (7) | 0.39027 (6) | 0.85061 (4) | 0.01414 (6) | |
H11 | 0.760 (3) | 0.368 (3) | 0.8018 (19) | 0.035 (5)* | |
H12 | 0.643 (3) | 0.483 (3) | 0.8581 (19) | 0.032 (4)* | |
C2 | 0.49265 (5) | 0.32967 (5) | 0.77768 (4) | 0.00986 (5) | |
C3 | 0.31180 (6) | 0.36010 (5) | 0.58322 (4) | 0.01116 (5) | |
H31 | 0.311 (2) | 0.2523 (18) | 0.5757 (16) | 0.018 (3)* | |
C4 | 0.11798 (7) | 0.40687 (6) | 0.62408 (5) | 0.01454 (6) | |
H41 | 0.021 (3) | 0.366 (2) | 0.5621 (17) | 0.025 (4)* | |
H42 | 0.081 (3) | 0.361 (2) | 0.7071 (17) | 0.025 (4)* | |
C5 | 0.35835 (6) | 0.42543 (5) | 0.45176 (4) | 0.01161 (5) |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.01495 (11) | 0.01218 (10) | 0.01125 (10) | −0.00139 (8) | −0.00082 (8) | 0.00273 (8) |
O2 | 0.02104 (14) | 0.01609 (12) | 0.01152 (11) | −0.00643 (11) | 0.00096 (10) | 0.00081 (9) |
O3 | 0.0288 (2) | 0.02021 (15) | 0.00904 (10) | −0.00811 (14) | −0.00344 (11) | 0.00003 (10) |
O4 | 0.01803 (13) | 0.01897 (14) | 0.01157 (10) | 0.00502 (11) | −0.00220 (9) | −0.00098 (10) |
N1 | 0.01464 (12) | 0.01409 (12) | 0.01013 (10) | 0.00249 (9) | −0.00345 (8) | −0.00075 (9) |
N2 | 0.01407 (11) | 0.01144 (10) | 0.00961 (10) | −0.00131 (9) | −0.00264 (8) | 0.00225 (8) |
C1 | 0.01356 (13) | 0.01742 (15) | 0.01146 (12) | −0.00303 (11) | −0.00254 (10) | 0.00177 (11) |
C2 | 0.01059 (10) | 0.01096 (11) | 0.00803 (10) | 0.00064 (9) | −0.00046 (8) | 0.00059 (8) |
C3 | 0.01419 (13) | 0.01092 (11) | 0.00839 (10) | −0.00072 (9) | −0.00134 (9) | 0.00080 (9) |
C4 | 0.01293 (13) | 0.01828 (16) | 0.01241 (13) | −0.00209 (12) | −0.00073 (10) | 0.00069 (11) |
C5 | 0.01487 (13) | 0.01189 (11) | 0.00806 (10) | −0.00049 (10) | −0.00032 (9) | 0.00036 (9) |
Geometric parameters (Å, º) top
O1—C2 | 1.2427 (6) | N2—C3 | 1.4532 (6) |
O2—C5 | 1.2584 (7) | N2—H4 | 0.804 (19) |
O3—C5 | 1.2591 (6) | C1—C2 | 1.5189 (7) |
O4—C4 | 1.4277 (8) | C1—H11 | 0.94 (2) |
O4—H5 | 0.86 (2) | C1—H12 | 0.85 (2) |
N1—C1 | 1.4788 (7) | C3—C4 | 1.5342 (8) |
N1—H1 | 0.889 (19) | C3—C5 | 1.5413 (7) |
N1—H2 | 0.97 (2) | C3—H31 | 0.983 (17) |
N1—H3 | 0.837 (17) | C4—H41 | 1.032 (18) |
N2—C2 | 1.3310 (6) | C4—H42 | 1.004 (18) |
C4—O4—H5 | 109.6 (15) | O1—C2—C1 | 121.61 (4) |
C1—N1—H1 | 104.5 (12) | N2—C2—C1 | 113.79 (4) |
C1—N1—H2 | 108.0 (11) | N2—C3—C4 | 110.96 (4) |
H1—N1—H2 | 112.3 (16) | N2—C3—C5 | 109.31 (4) |
C1—N1—H3 | 109.7 (11) | C4—C3—C5 | 110.23 (4) |
H1—N1—H3 | 113.5 (17) | N2—C3—H31 | 110.9 (10) |
H2—N1—H3 | 108.6 (17) | C4—C3—H31 | 107.1 (10) |
C2—N2—C3 | 122.86 (4) | C5—C3—H31 | 108.3 (10) |
C2—N2—H4 | 120.4 (12) | O4—C4—C3 | 111.00 (4) |
C3—N2—H4 | 116.6 (12) | O4—C4—H41 | 110.7 (11) |
N1—C1—C2 | 111.46 (4) | C3—C4—H41 | 110.6 (11) |
N1—C1—H11 | 110.9 (13) | O4—C4—H42 | 109.9 (11) |
C2—C1—H11 | 106.1 (13) | C3—C4—H42 | 111.9 (11) |
N1—C1—H12 | 108.9 (13) | H41—C4—H42 | 102.4 (15) |
C2—C1—H12 | 108.5 (15) | O2—C5—O3 | 126.75 (4) |
H11—C1—H12 | 111 (2) | O2—C5—C3 | 118.15 (4) |
O1—C2—N2 | 124.52 (4) | O3—C5—C3 | 115.07 (4) |
C3—N2—C2—O1 | −4.82 (7) | C5—C3—C4—O4 | −60.18 (5) |
N1—C1—C2—O1 | −17.99 (6) | N2—C3—C5—O2 | −21.72 (6) |
N1—C1—C2—N2 | 165.09 (4) | N2—C3—C4—O4 | 61.06 (5) |
C1—C2—N2—C3 | 171.99 (4) | C4—C3—C5—O2 | 100.49 (5) |
C2—N2—C3—C4 | 86.49 (5) | N2—C3—C5—O3 | 159.79 (5) |
C2—N2—C3—C5 | −151.73 (4) | C4—C3—C5—O3 | −78.00 (6) |
(glyser-1a) Glycyl-L-serine top
Crystal data top
C5H10N2O4 | Dx = 1.549 Mg m−3 |
Mr = 162.15 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 8192 reflections |
a = 7.275 (2) Å | θ = 2–35° |
b = 9.097 (3) Å | µ = 0.13 mm−1 |
c = 10.507 (3) Å | T = 150 K |
V = 695.4 (4) Å3 | Distorted bipyramid, colourless |
Z = 4 | 2.20 × 2.00 × 0.80 mm |
F(000) = 344 |
Data collection top
Siemens SMART CCD diffractometer | 8814 independent reflections |
Radiation source: fine-focus sealed tube | 8233 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
Detector resolution: 8.3 pixels mm-1 | θmax = 55.1°, θmin = 3.0° |
Sets of exposures each taken over 0.6° ω rotation scans | h = −16→16 |
Absorption correction: empirical SADABS (Sheldrick, 1996) | k = −17→20 |
Tmin = 0.757, Tmax = 0.900 | l = −20→24 |
28701 measured reflections |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.032 | All H-atom parameters refined |
wR(F2) = 0.085 | w = 1/[σ2(Fo2) + (0.0405P)2 + 0.0338P] where P = (Fo2 + 2Fc2)/3 |
S = 1.19 | (Δ/σ)max = 0.003 |
8814 reflections | Δρmax = 0.38 e Å−3 |
141 parameters | Δρmin = −0.34 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.095 (8) |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.41575 (4) | 0.21348 (3) | 0.80986 (3) | 0.01216 (4) | |
O2 | 0.45819 (5) | 0.53828 (4) | 0.44765 (3) | 0.01565 (5) | |
O3 | 0.28691 (6) | 0.35987 (4) | 0.35851 (3) | 0.01869 (6) | |
O4 | 0.10414 (5) | 0.56305 (4) | 0.63266 (3) | 0.01561 (5) | |
H5 | 0.135 (2) | 0.5889 (17) | 0.7066 (14) | 0.028 (3)* | |
N1 | 0.66989 (5) | 0.32446 (4) | 0.97896 (3) | 0.01236 (4) | |
H1 | 0.778 (2) | 0.3469 (16) | 1.0050 (13) | 0.027 (3)* | |
H2 | 0.5798 (18) | 0.3657 (14) | 1.0326 (12) | 0.021 (2)* | |
H3 | 0.6459 (17) | 0.2283 (13) | 0.9776 (11) | 0.018 (2)* | |
N2 | 0.44814 (4) | 0.40815 (3) | 0.67533 (3) | 0.01108 (4) | |
H4 | 0.4958 (17) | 0.4914 (14) | 0.6639 (11) | 0.016 (2)* | |
C1 | 0.65614 (5) | 0.39030 (4) | 0.85066 (4) | 0.01352 (5) | |
H11 | 0.759 (2) | 0.3699 (16) | 0.8040 (14) | 0.034 (3)* | |
H12 | 0.643 (2) | 0.4898 (16) | 0.8566 (14) | 0.027 (3)* | |
C2 | 0.49269 (4) | 0.32971 (3) | 0.77765 (3) | 0.00922 (4) | |
C3 | 0.31182 (5) | 0.36013 (4) | 0.58322 (3) | 0.01052 (4) | |
H31 | 0.3115 (17) | 0.2520 (12) | 0.5764 (12) | 0.018 (2)* | |
C4 | 0.11798 (5) | 0.40679 (5) | 0.62413 (4) | 0.01388 (5) | |
H41 | 0.0252 (19) | 0.3688 (15) | 0.5603 (13) | 0.025 (3)* | |
H42 | 0.0814 (18) | 0.3613 (14) | 0.7065 (12) | 0.021 (2)* | |
C5 | 0.35831 (5) | 0.42538 (4) | 0.45173 (3) | 0.01097 (4) |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.01436 (9) | 0.01068 (8) | 0.01146 (8) | −0.00132 (6) | −0.00084 (7) | 0.00263 (6) |
O2 | 0.02048 (11) | 0.01466 (9) | 0.01181 (9) | −0.00636 (8) | 0.00102 (8) | 0.00076 (7) |
O3 | 0.02823 (15) | 0.01872 (11) | 0.00911 (8) | −0.00806 (11) | −0.00346 (9) | 0.00002 (8) |
O4 | 0.01762 (10) | 0.01747 (10) | 0.01174 (9) | 0.00501 (8) | −0.00219 (7) | −0.00092 (8) |
N1 | 0.01398 (9) | 0.01281 (9) | 0.01030 (8) | 0.00244 (7) | −0.00345 (7) | −0.00073 (7) |
N2 | 0.01337 (9) | 0.01006 (8) | 0.00980 (8) | −0.00119 (7) | −0.00266 (7) | 0.00217 (6) |
C1 | 0.01285 (10) | 0.01604 (12) | 0.01168 (10) | −0.00293 (9) | −0.00251 (8) | 0.00181 (8) |
C2 | 0.00989 (8) | 0.00963 (8) | 0.00815 (8) | 0.00066 (7) | −0.00038 (6) | 0.00056 (7) |
C3 | 0.01356 (10) | 0.00944 (8) | 0.00856 (8) | −0.00081 (7) | −0.00136 (7) | 0.00068 (7) |
C4 | 0.01220 (10) | 0.01681 (12) | 0.01262 (10) | −0.00213 (9) | −0.00075 (8) | 0.00065 (9) |
C5 | 0.01422 (10) | 0.01047 (9) | 0.00823 (8) | −0.00049 (7) | −0.00032 (7) | 0.00034 (7) |
Geometric parameters (Å, º) top
O1—C2 | 1.2433 (5) | N2—C3 | 1.4530 (5) |
O2—C5 | 1.2589 (5) | N2—H4 | 0.842 (13) |
O3—C5 | 1.2587 (5) | C1—C2 | 1.5187 (6) |
O4—C4 | 1.4279 (7) | C1—H11 | 0.912 (16) |
O4—H5 | 0.842 (15) | C1—H12 | 0.913 (15) |
N1—C1 | 1.4784 (6) | C3—C4 | 1.5342 (6) |
N1—H1 | 0.861 (15) | C3—C5 | 1.5413 (6) |
N1—H2 | 0.942 (13) | C3—H31 | 0.986 (11) |
N1—H3 | 0.892 (12) | C4—H41 | 1.012 (13) |
N2—C2 | 1.3304 (5) | C4—H42 | 0.996 (13) |
C4—O4—H5 | 108.5 (10) | O1—C2—C1 | 121.58 (3) |
C1—N1—H1 | 104.8 (10) | N2—C2—C1 | 113.84 (3) |
C1—N1—H2 | 109.7 (8) | N2—C3—C4 | 110.96 (3) |
H1—N1—H2 | 110.7 (12) | N2—C3—C5 | 109.35 (3) |
C1—N1—H3 | 111.7 (8) | C4—C3—C5 | 110.26 (3) |
H1—N1—H3 | 114.7 (12) | N2—C3—H31 | 110.5 (7) |
H2—N1—H3 | 105.3 (12) | C4—C3—H31 | 107.1 (7) |
C2—N2—C3 | 122.91 (3) | C5—C3—H31 | 108.6 (7) |
C2—N2—H4 | 119.8 (8) | O4—C4—C3 | 110.97 (3) |
C3—N2—H4 | 117.2 (8) | O4—C4—H41 | 109.5 (8) |
N1—C1—C2 | 111.50 (3) | C3—C4—H41 | 109.5 (8) |
N1—C1—H11 | 110.6 (9) | O4—C4—H42 | 109.9 (7) |
C2—C1—H11 | 107.2 (10) | C3—C4—H42 | 112.0 (7) |
N1—C1—H12 | 110.3 (9) | H41—C4—H42 | 104.8 (11) |
C2—C1—H12 | 108.2 (10) | O3—C5—O2 | 126.73 (4) |
H11—C1—H12 | 109.0 (14) | O3—C5—C3 | 115.12 (4) |
O1—C2—N2 | 124.50 (3) | O2—C5—C3 | 118.13 (3) |
C3—N2—C2—O1 | −4.87 (5) | C5—C3—C4—O4 | −60.18 (4) |
N1—C1—C2—O1 | −17.92 (5) | N2—C3—C5—O3 | 159.79 (4) |
N1—C1—C2—N2 | 165.10 (3) | C4—C3—C5—O3 | −77.95 (5) |
C1—C2—N2—C3 | 172.01 (3) | N2—C3—C5—O2 | −21.73 (5) |
C2—N2—C3—C4 | 86.47 (4) | N2—C3—C4—O4 | 61.13 (4) |
C2—N2—C3—C5 | −151.69 (3) | C4—C3—C5—O2 | 100.53 (4) |
(glyser-2a) Glycyl-L-serine top
Crystal data top
C5H10N2O4 | Dx = 1.549 Mg m−3 |
Mr = 162.15 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 8192 reflections |
a = 7.275 (2) Å | θ = 2–35° |
b = 9.097 (3) Å | µ = 0.13 mm−1 |
c = 10.507 (3) Å | T = 150 K |
V = 695.4 (4) Å3 | Distorted bipyramid, colourless |
Z = 4 | 2.20 × 2.00 × 0.80 mm |
F(000) = 344 |
Data collection top
Siemens SMART CCD diffractometer | 8903 independent reflections |
Radiation source: fine-focus sealed tube | 7186 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.070 |
Detector resolution: 8.3 pixels mm-1 | θmax = 55.5°, θmin = 3.0° |
Sets of exposures each taken over 1.2° ω rotation scans | h = −16→16 |
Absorption correction: empirical SADABS (Sheldrick, 1996) | k = −17→20 |
Tmin = 0.757, Tmax = 0.900 | l = −20→24 |
28444 measured reflections |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.062 | All H-atom parameters refined |
wR(F2) = 0.145 | w = 1/[σ2(Fo2) + (0.0323P)2 + 0.1795P] where P = (Fo2 + 2Fc2)/3 |
S = 1.31 | (Δ/σ)max = 0.004 |
8903 reflections | Δρmax = 0.48 e Å−3 |
141 parameters | Δρmin = −0.46 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.137 (10) |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.41588 (9) | 0.21353 (7) | 0.80983 (6) | 0.01255 (9) | |
O2 | 0.45837 (11) | 0.53825 (8) | 0.44771 (6) | 0.01609 (11) | |
O3 | 0.28692 (12) | 0.35999 (9) | 0.35845 (6) | 0.01901 (13) | |
O4 | 0.10397 (10) | 0.56309 (8) | 0.63260 (6) | 0.01594 (10) | |
H5 | 0.137 (3) | 0.591 (3) | 0.705 (2) | 0.029 (5)* | |
N1 | 0.66984 (10) | 0.32449 (8) | 0.97894 (6) | 0.01264 (9) | |
H1 | 0.781 (3) | 0.348 (2) | 1.007 (2) | 0.023 (5)* | |
H2 | 0.582 (3) | 0.364 (2) | 1.033 (2) | 0.022 (5)* | |
H3 | 0.648 (3) | 0.228 (2) | 0.9778 (19) | 0.016 (4)* | |
N2 | 0.44822 (10) | 0.40816 (7) | 0.67534 (6) | 0.01142 (9) | |
H4 | 0.498 (3) | 0.485 (2) | 0.663 (2) | 0.021 (5)* | |
C1 | 0.65607 (12) | 0.39048 (10) | 0.85079 (8) | 0.01411 (11) | |
H11 | 0.759 (4) | 0.365 (3) | 0.804 (2) | 0.033 (6)* | |
H12 | 0.643 (3) | 0.488 (2) | 0.855 (2) | 0.025 (5)* | |
C2 | 0.49275 (10) | 0.32981 (8) | 0.77772 (7) | 0.00965 (9) | |
C3 | 0.31169 (11) | 0.36011 (8) | 0.58323 (7) | 0.01077 (9) | |
H31 | 0.316 (3) | 0.252 (2) | 0.5774 (19) | 0.017 (4)* | |
C4 | 0.11779 (12) | 0.40665 (10) | 0.62420 (8) | 0.01451 (11) | |
H41 | 0.026 (3) | 0.371 (2) | 0.563 (2) | 0.028 (5)* | |
H42 | 0.083 (3) | 0.361 (2) | 0.7069 (19) | 0.019 (4)* | |
C5 | 0.35840 (11) | 0.42544 (8) | 0.45174 (7) | 0.01138 (10) |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0142 (2) | 0.01126 (18) | 0.01221 (19) | −0.00136 (16) | −0.00075 (16) | 0.00260 (15) |
O2 | 0.0205 (3) | 0.0155 (2) | 0.0123 (2) | −0.0067 (2) | 0.00109 (19) | 0.00071 (17) |
O3 | 0.0276 (3) | 0.0198 (3) | 0.00968 (19) | −0.0084 (2) | −0.0034 (2) | 0.00016 (18) |
O4 | 0.0172 (2) | 0.0181 (2) | 0.0126 (2) | 0.00506 (19) | −0.00224 (18) | −0.00117 (18) |
N1 | 0.0136 (2) | 0.0136 (2) | 0.0107 (2) | 0.00222 (18) | −0.00383 (16) | −0.00076 (17) |
N2 | 0.0130 (2) | 0.01063 (19) | 0.01063 (19) | −0.00111 (17) | −0.00281 (16) | 0.00209 (15) |
C1 | 0.0131 (3) | 0.0174 (3) | 0.0118 (2) | −0.0030 (2) | −0.00262 (19) | 0.0021 (2) |
C2 | 0.0094 (2) | 0.0106 (2) | 0.00897 (19) | 0.00064 (17) | 0.00000 (16) | 0.00030 (16) |
C3 | 0.0133 (2) | 0.0100 (2) | 0.00890 (19) | −0.00070 (18) | −0.00151 (18) | 0.00087 (16) |
C4 | 0.0121 (2) | 0.0180 (3) | 0.0134 (2) | −0.0028 (2) | −0.0006 (2) | 0.0006 (2) |
C5 | 0.0138 (2) | 0.0114 (2) | 0.00896 (19) | −0.00013 (19) | −0.00029 (18) | 0.00058 (17) |
Geometric parameters (Å, º) top
O1—C2 | 1.2432 (10) | N2—C3 | 1.4541 (10) |
O2—C5 | 1.2585 (11) | N2—H4 | 0.80 (2) |
O3—C5 | 1.2592 (10) | C1—C2 | 1.5185 (11) |
O4—C4 | 1.4294 (13) | C1—H11 | 0.93 (3) |
O4—H5 | 0.84 (2) | C1—H12 | 0.90 (2) |
N1—C1 | 1.4776 (11) | C3—C4 | 1.5345 (12) |
N1—H1 | 0.89 (2) | C3—C5 | 1.5419 (11) |
N1—H2 | 0.93 (2) | C3—H31 | 0.983 (19) |
N1—H3 | 0.89 (2) | C4—H41 | 0.99 (2) |
N2—C2 | 1.3305 (10) | C4—H42 | 1.00 (2) |
C4—O4—H5 | 109.5 (17) | O1—C2—C1 | 121.61 (7) |
C1—N1—H1 | 105.8 (14) | N2—C2—C1 | 113.87 (7) |
C1—N1—H2 | 110.5 (13) | N2—C3—C4 | 111.00 (7) |
H1—N1—H2 | 109.0 (19) | N2—C3—C5 | 109.26 (6) |
C1—N1—H3 | 112.1 (13) | C4—C3—C5 | 110.34 (6) |
H1—N1—H3 | 113.7 (19) | N2—C3—H31 | 108.7 (12) |
H2—N1—H3 | 105.8 (19) | C4—C3—H31 | 108.7 (12) |
C2—N2—C3 | 122.92 (7) | C5—C3—H31 | 108.8 (12) |
C2—N2—H4 | 119.1 (16) | O4—C4—C3 | 110.90 (7) |
C3—N2—H4 | 118.0 (16) | O4—C4—H41 | 108.9 (13) |
N1—C1—C2 | 111.47 (7) | C3—C4—H41 | 110.4 (14) |
N1—C1—H11 | 109.1 (15) | O4—C4—H42 | 110.3 (12) |
C2—C1—H11 | 106.0 (15) | C3—C4—H42 | 111.3 (12) |
N1—C1—H12 | 111.3 (14) | H41—C4—H42 | 104.8 (18) |
C2—C1—H12 | 107.9 (15) | O2—C5—O3 | 126.73 (8) |
H11—C1—H12 | 111 (2) | O2—C5—C3 | 118.15 (7) |
O1—C2—N2 | 124.45 (7) | O3—C5—C3 | 115.09 (7) |
C3—N2—C2—O1 | −4.71 (12) | C5—C3—C4—O4 | −60.08 (8) |
N1—C1—C2—O1 | −17.86 (11) | N2—C3—C5—O2 | −21.73 (10) |
N1—C1—C2—N2 | 165.21 (7) | N2—C3—C4—O4 | 61.19 (8) |
C1—C2—N2—C3 | 172.12 (7) | C4—C3—C5—O2 | 100.57 (9) |
C2—N2—C3—C4 | 86.35 (9) | N2—C3—C5—O3 | 159.82 (8) |
C2—N2—C3—C5 | −151.74 (7) | C4—C3—C5—O3 | −77.88 (9) |
(glyser-3a) Glycyl-L-serine top
Crystal data top
C5H10N2O4 | Dx = 1.549 Mg m−3 |
Mr = 162.15 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 8192 reflections |
a = 7.275 (2) Å | θ = 2–35° |
b = 9.097 (3) Å | µ = 0.13 mm−1 |
c = 10.507 (3) Å | T = 150 K |
V = 695.4 (4) Å3 | Distorted bipyramid, colourless |
Z = 4 | 2.20 × 2.00 × 0.80 mm |
F(000) = 344 |
Data collection top
Siemens SMART CCD diffractometer | 3467 independent reflections |
Radiation source: fine-focus sealed tube | 2948 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
Detector resolution: 8.3 pixels mm-1 | θmax = 37.7°, θmin = 3.0° |
Sets of exposures each taken over 1.8° ω rotation scans | h = −12→11 |
Absorption correction: empirical SADABS (Sheldrick, 1996) | k = −14→15 |
Tmin = 0.757, Tmax = 0.900 | l = −17→17 |
9507 measured reflections |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.035 | All H-atom parameters refined |
wR(F2) = 0.088 | w = 1/[σ2(Fo2) + (0.050P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.002 |
3467 reflections | Δρmax = 0.31 e Å−3 |
141 parameters | Δρmin = −0.25 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.228 (14) |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.41578 (9) | 0.21355 (7) | 0.80983 (6) | 0.01458 (13) | |
O2 | 0.45829 (11) | 0.53824 (8) | 0.44772 (6) | 0.01802 (14) | |
O3 | 0.28674 (12) | 0.36003 (8) | 0.35863 (6) | 0.02104 (15) | |
O4 | 0.10391 (10) | 0.56309 (8) | 0.63264 (6) | 0.01782 (14) | |
H5 | 0.140 (2) | 0.5941 (18) | 0.7121 (16) | 0.024 (3)* | |
N1 | 0.66983 (11) | 0.32450 (9) | 0.97906 (7) | 0.01414 (14) | |
H1 | 0.780 (3) | 0.3490 (18) | 1.0050 (15) | 0.027 (4)* | |
H2 | 0.583 (2) | 0.3632 (15) | 1.0363 (13) | 0.016 (3)* | |
H3 | 0.650 (2) | 0.2285 (17) | 0.9762 (14) | 0.019 (3)* | |
N2 | 0.44802 (11) | 0.40799 (9) | 0.67541 (7) | 0.01313 (13) | |
H4 | 0.497 (2) | 0.4911 (18) | 0.6662 (14) | 0.018 (3)* | |
C1 | 0.65596 (13) | 0.39057 (10) | 0.85065 (8) | 0.01568 (16) | |
H11 | 0.760 (3) | 0.3670 (19) | 0.7994 (16) | 0.036 (5)* | |
H12 | 0.641 (3) | 0.4902 (18) | 0.8557 (14) | 0.023 (4)* | |
C2 | 0.49261 (11) | 0.32978 (9) | 0.77780 (7) | 0.01123 (13) | |
C3 | 0.31164 (12) | 0.36014 (9) | 0.58308 (7) | 0.01225 (14) | |
H31 | 0.315 (2) | 0.2508 (13) | 0.5757 (13) | 0.011 (3)* | |
C4 | 0.11779 (12) | 0.40641 (10) | 0.62413 (8) | 0.01574 (15) | |
H41 | 0.025 (2) | 0.3682 (17) | 0.5610 (16) | 0.029 (4)* | |
H42 | 0.085 (2) | 0.3599 (15) | 0.7074 (13) | 0.016 (3)* | |
C5 | 0.35829 (12) | 0.42557 (9) | 0.45163 (7) | 0.01298 (15) |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0165 (3) | 0.0138 (3) | 0.0134 (2) | −0.0013 (2) | −0.0007 (2) | 0.0025 (2) |
O2 | 0.0229 (3) | 0.0169 (3) | 0.0142 (3) | −0.0062 (3) | 0.0011 (2) | 0.0011 (2) |
O3 | 0.0302 (4) | 0.0214 (3) | 0.0115 (2) | −0.0081 (3) | −0.0038 (2) | −0.0001 (2) |
O4 | 0.0206 (3) | 0.0194 (3) | 0.0135 (3) | 0.0054 (3) | −0.0023 (2) | −0.0011 (2) |
N1 | 0.0159 (3) | 0.0150 (3) | 0.0115 (3) | 0.0027 (3) | −0.0037 (2) | −0.0005 (2) |
N2 | 0.0151 (3) | 0.0125 (3) | 0.0118 (3) | −0.0010 (3) | −0.0028 (2) | 0.0027 (2) |
C1 | 0.0161 (4) | 0.0182 (4) | 0.0128 (3) | −0.0031 (3) | −0.0026 (3) | 0.0024 (3) |
C2 | 0.0112 (3) | 0.0129 (3) | 0.0096 (3) | 0.0020 (3) | 0.0000 (2) | 0.0000 (2) |
C3 | 0.0152 (3) | 0.0111 (3) | 0.0104 (3) | −0.0011 (3) | −0.0017 (3) | 0.0008 (2) |
C4 | 0.0148 (3) | 0.0179 (4) | 0.0145 (3) | −0.0016 (3) | −0.0007 (3) | 0.0008 (3) |
C5 | 0.0159 (3) | 0.0121 (3) | 0.0110 (3) | 0.0009 (3) | 0.0004 (3) | 0.0007 (2) |
Geometric parameters (Å, º) top
O1—C2 | 1.2424 (11) | N2—C3 | 1.4543 (11) |
O2—C5 | 1.2576 (11) | N2—H4 | 0.841 (17) |
O3—C5 | 1.2575 (11) | C1—C2 | 1.5179 (13) |
O4—C4 | 1.4317 (12) | C1—H11 | 0.95 (2) |
O4—H5 | 0.919 (17) | C1—H12 | 0.914 (16) |
N1—C1 | 1.4804 (12) | C3—C4 | 1.5337 (13) |
N1—H1 | 0.878 (19) | C3—C5 | 1.5417 (12) |
N1—H2 | 0.939 (15) | C3—H31 | 0.998 (12) |
N1—H3 | 0.885 (16) | C4—H41 | 1.007 (17) |
N2—C2 | 1.3300 (11) | C4—H42 | 1.001 (14) |
C4—O4—H5 | 110.0 (10) | O1—C2—C1 | 121.72 (7) |
C1—N1—H1 | 104.0 (11) | N2—C2—C1 | 113.82 (8) |
C1—N1—H2 | 112.7 (8) | N2—C3—C4 | 110.96 (7) |
H1—N1—H2 | 108.7 (14) | N2—C3—C5 | 109.38 (7) |
C1—N1—H3 | 111.0 (10) | C4—C3—C5 | 110.39 (7) |
H1—N1—H3 | 114.2 (15) | N2—C3—H31 | 109.4 (8) |
H2—N1—H3 | 106.4 (14) | C4—C3—H31 | 108.6 (8) |
C2—N2—C3 | 123.08 (8) | C5—C3—H31 | 108.1 (8) |
C2—N2—H4 | 118.1 (11) | O4—C4—C3 | 110.83 (7) |
C3—N2—H4 | 118.7 (10) | O4—C4—H41 | 109.7 (9) |
N1—C1—C2 | 111.41 (7) | C3—C4—H41 | 109.5 (10) |
N1—C1—H11 | 111.8 (10) | O4—C4—H42 | 110.4 (8) |
C2—C1—H11 | 104.6 (11) | C3—C4—H42 | 110.5 (9) |
N1—C1—H12 | 110.9 (9) | H41—C4—H42 | 105.6 (13) |
C2—C1—H12 | 107.3 (11) | O2—C5—O3 | 126.91 (8) |
H11—C1—H12 | 110.5 (16) | O2—C5—C3 | 118.12 (7) |
O1—C2—N2 | 124.38 (8) | O3—C5—C3 | 114.96 (8) |
C3—N2—C2—O1 | −4.72 (13) | N2—C3—C4—O4 | 61.34 (9) |
C3—N2—C2—C1 | 172.03 (8) | C5—C3—C4—O4 | −60.09 (9) |
N1—C1—C2—O1 | −17.92 (12) | N2—C3—C5—O2 | −21.67 (11) |
N1—C1—C2—N2 | 165.24 (7) | C4—C3—C5—O2 | 100.69 (9) |
C2—N2—C3—C4 | 86.21 (10) | N2—C3—C5—O3 | 159.80 (8) |
C2—N2—C3—C5 | −151.76 (8) | C4—C3—C5—O3 | −77.84 (10) |
(glyser-4) Glycyl-L-serine top
Crystal data top
C5H10N2O4 | Dx = 1.549 Mg m−3 |
Mr = 162.15 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 8192 reflections |
a = 7.275 (2) Å | θ = 2–35° |
b = 9.097 (3) Å | µ = 0.13 mm−1 |
c = 10.507 (3) Å | T = 150 K |
V = 695.4 (4) Å3 | Sphere, colourless |
Z = 4 | 0.15 mm (radius) |
F(000) = 344 |
Data collection top
Siemens SMART CCD diffractometer | 6860 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.058 |
Graphite monochromator | θmax = 55.1°, θmin = 3.0° |
Detector resolution: 8.3 pixels mm-1 | h = −16→16 |
Sets of exposures each taken over 0.6° ω rotation scans | k = −19→20 |
28767 measured reflections | l = −24→24 |
8721 independent reflections |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.115 | All H-atom parameters refined |
S = 1.21 | w = 1/[σ2(Fo2) + (0.0334P)2 + 0.1007P] where P = (Fo2 + 2Fc2)/3 |
8721 reflections | (Δ/σ)max = 0.001 |
140 parameters | Δρmax = 0.57 e Å−3 |
0 restraints | Δρmin = −0.35 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.41581 (7) | 0.21343 (5) | 0.80993 (5) | 0.01257 (7) | |
O2 | 0.45827 (9) | 0.53823 (6) | 0.44761 (5) | 0.01621 (9) | |
O3 | 0.28672 (10) | 0.36000 (7) | 0.35847 (5) | 0.01923 (10) | |
O4 | 0.10390 (8) | 0.56301 (6) | 0.63264 (5) | 0.01612 (9) | |
H5 | 0.134 (2) | 0.5906 (18) | 0.7058 (16) | 0.023 (3)* | |
N1 | 0.66985 (8) | 0.32437 (7) | 0.97903 (5) | 0.01282 (8) | |
H1 | 0.781 (2) | 0.3477 (18) | 1.0056 (16) | 0.025 (4)* | |
H2 | 0.583 (2) | 0.3636 (16) | 1.0336 (14) | 0.019 (3)* | |
H3 | 0.649 (2) | 0.2282 (16) | 0.9762 (14) | 0.015 (3)* | |
N2 | 0.44829 (8) | 0.40806 (6) | 0.67534 (5) | 0.01151 (7) | |
H4 | 0.496 (2) | 0.4900 (18) | 0.6646 (15) | 0.020 (3)* | |
C1 | 0.65613 (10) | 0.39037 (8) | 0.85067 (6) | 0.01400 (9) | |
H11 | 0.762 (3) | 0.3674 (19) | 0.8036 (17) | 0.034 (5)* | |
H12 | 0.642 (2) | 0.4912 (17) | 0.8576 (15) | 0.021 (3)* | |
C2 | 0.49271 (8) | 0.32978 (7) | 0.77771 (5) | 0.00968 (7) | |
C3 | 0.31173 (9) | 0.36015 (7) | 0.58317 (6) | 0.01086 (8) | |
H31 | 0.314 (2) | 0.2542 (15) | 0.5763 (14) | 0.015 (3)* | |
C4 | 0.11798 (9) | 0.40652 (8) | 0.62412 (6) | 0.01423 (9) | |
H41 | 0.025 (2) | 0.3701 (18) | 0.5612 (17) | 0.028 (4)* | |
H42 | 0.083 (2) | 0.3626 (15) | 0.7069 (14) | 0.015 (3)* | |
C5 | 0.35835 (9) | 0.42541 (7) | 0.45168 (6) | 0.01156 (8) |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.01495 (18) | 0.01106 (15) | 0.01170 (16) | −0.00142 (13) | −0.00066 (14) | 0.00227 (13) |
O2 | 0.0217 (2) | 0.01497 (18) | 0.01202 (17) | −0.00622 (17) | 0.00122 (16) | 0.00074 (14) |
O3 | 0.0287 (3) | 0.0195 (2) | 0.00949 (16) | −0.0078 (2) | −0.00339 (17) | −0.00016 (16) |
O4 | 0.0186 (2) | 0.0180 (2) | 0.01179 (17) | 0.00525 (16) | −0.00209 (15) | −0.00105 (15) |
N1 | 0.01446 (19) | 0.01337 (18) | 0.01064 (17) | 0.00237 (16) | −0.00341 (15) | −0.00062 (15) |
N2 | 0.01371 (18) | 0.01044 (16) | 0.01038 (16) | −0.00122 (14) | −0.00266 (14) | 0.00218 (13) |
C1 | 0.0134 (2) | 0.0167 (2) | 0.01199 (19) | −0.00288 (18) | −0.00242 (17) | 0.00189 (17) |
C2 | 0.01051 (17) | 0.01018 (16) | 0.00834 (15) | 0.00081 (15) | 0.00002 (14) | 0.00036 (14) |
C3 | 0.0140 (2) | 0.00974 (17) | 0.00882 (16) | −0.00077 (16) | −0.00142 (16) | 0.00073 (14) |
C4 | 0.0128 (2) | 0.0169 (2) | 0.0130 (2) | −0.00216 (19) | −0.00048 (17) | 0.00040 (18) |
C5 | 0.0149 (2) | 0.01111 (18) | 0.00869 (16) | −0.00027 (16) | −0.00020 (16) | 0.00026 (15) |
Geometric parameters (Å, º) top
O1—C2 | 1.2442 (8) | N2—C3 | 1.4543 (9) |
O2—C5 | 1.2584 (9) | N2—H4 | 0.831 (17) |
O3—C5 | 1.2588 (9) | C1—C2 | 1.5182 (9) |
O4—C4 | 1.4301 (10) | C1—H11 | 0.939 (19) |
O4—H5 | 0.838 (17) | C1—H12 | 0.927 (16) |
N1—C1 | 1.4796 (10) | C3—C4 | 1.5330 (10) |
N1—H1 | 0.878 (18) | C3—C5 | 1.5415 (9) |
N1—H2 | 0.927 (16) | C3—H31 | 0.967 (14) |
N1—H3 | 0.889 (14) | C4—H41 | 0.999 (17) |
N2—C2 | 1.3298 (8) | C4—H42 | 0.990 (14) |
C4—O4—H5 | 109.7 (11) | O1—C2—C1 | 121.58 (6) |
C1—N1—H1 | 104.7 (11) | N2—C2—C1 | 113.85 (6) |
C1—N1—H2 | 111.2 (9) | N2—C3—C4 | 111.03 (5) |
H1—N1—H2 | 109.7 (14) | N2—C3—C5 | 109.34 (5) |
C1—N1—H3 | 110.9 (9) | C4—C3—C5 | 110.36 (5) |
H1—N1—H3 | 114.0 (15) | N2—C3—H31 | 109.7 (9) |
H2—N1—H3 | 106.3 (14) | C4—C3—H31 | 108.1 (9) |
C2—N2—C3 | 122.97 (6) | C5—C3—H31 | 108.3 (9) |
C2—N2—H4 | 119.2 (11) | O4—C4—C3 | 110.94 (6) |
C3—N2—H4 | 117.8 (11) | O4—C4—H41 | 108.8 (10) |
N1—C1—C2 | 111.45 (6) | C3—C4—H41 | 110.0 (10) |
N1—C1—H11 | 109.5 (11) | O4—C4—H42 | 109.2 (8) |
C2—C1—H11 | 107.2 (11) | C3—C4—H42 | 111.8 (9) |
N1—C1—H12 | 109.7 (10) | H41—C4—H42 | 105.9 (13) |
C2—C1—H12 | 108.0 (10) | O2—C5—O3 | 126.75 (6) |
H11—C1—H12 | 110.9 (15) | O2—C5—C3 | 118.14 (6) |
O1—C2—N2 | 124.49 (6) | O3—C5—C3 | 115.09 (6) |
C3—N2—C2—O1 | −4.67 (10) | C5—C3—C4—O4 | −60.15 (7) |
N1—C1—C2—O1 | −17.94 (9) | N2—C3—C5—O2 | −21.79 (8) |
N1—C1—C2—N2 | 165.21 (6) | N2—C3—C4—O4 | 61.25 (7) |
C1—C2—N2—C3 | 172.08 (6) | C4—C3—C5—O2 | 100.61 (7) |
C2—N2—C3—C4 | 86.23 (7) | N2—C3—C5—O3 | 159.83 (6) |
C2—N2—C3—C5 | −151.77 (6) | C4—C3—C5—O3 | −77.77 (8) |
(glyser-4a) Glycyl-L-serine top
Crystal data top
C5H10N2O4 | Dx = 1.549 Mg m−3 |
Mr = 162.15 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 8192 reflections |
a = 7.275 (2) Å | θ = 2–35° |
b = 9.097 (3) Å | µ = 0.13 mm−1 |
c = 10.507 (3) Å | T = 150 K |
V = 695.4 (4) Å3 | Sphere, colourless |
Z = 4 | 0.15 mm (radius) |
F(000) = 344 |
Data collection top
Siemens SMART CCD diffractometer | 8721 independent reflections |
Radiation source: fine-focus sealed tube | 6864 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.056 |
Detector resolution: 8.3 pixels mm-1 | θmax = 55.1°, θmin = 3.0° |
Sets of exposures each taken over 0.6° ω rotation scans | h = −16→16 |
Absorption correction: empirical SADABS (Sheldrick, 1996) | k = −19→20 |
Tmin = 0.961, Tmax = 0.961 | l = −24→24 |
28767 measured reflections |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.118 | All H-atom parameters refined |
S = 1.21 | w = 1/[σ2(Fo2) + (0.0363P)2 + 0.1P] where P = (Fo2 + 2Fc2)/3 |
8721 reflections | (Δ/σ)max = 0.002 |
140 parameters | Δρmax = 0.60 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.41580 (7) | 0.21343 (6) | 0.80994 (5) | 0.01269 (7) | |
O2 | 0.45826 (9) | 0.53825 (6) | 0.44761 (5) | 0.01635 (9) | |
O3 | 0.28674 (10) | 0.36000 (7) | 0.35846 (5) | 0.01939 (10) | |
O4 | 0.10388 (8) | 0.56301 (6) | 0.63262 (5) | 0.01626 (9) | |
H5 | 0.134 (2) | 0.5901 (19) | 0.7053 (17) | 0.023 (4)* | |
N1 | 0.66984 (9) | 0.32438 (7) | 0.97903 (5) | 0.01296 (8) | |
H1 | 0.780 (3) | 0.347 (2) | 1.0051 (17) | 0.028 (4)* | |
H2 | 0.583 (2) | 0.3637 (16) | 1.0334 (15) | 0.018 (3)* | |
H3 | 0.649 (2) | 0.2273 (16) | 0.9763 (14) | 0.015 (3)* | |
N2 | 0.44830 (8) | 0.40807 (6) | 0.67535 (5) | 0.01164 (7) | |
H4 | 0.496 (2) | 0.4895 (19) | 0.6647 (16) | 0.020 (3)* | |
C1 | 0.65616 (10) | 0.39036 (8) | 0.85066 (7) | 0.01413 (10) | |
H11 | 0.761 (3) | 0.368 (2) | 0.8031 (17) | 0.033 (5)* | |
H12 | 0.641 (2) | 0.4914 (18) | 0.8572 (16) | 0.022 (4)* | |
C2 | 0.49272 (8) | 0.32980 (7) | 0.77771 (6) | 0.00980 (7) | |
C3 | 0.31175 (9) | 0.36015 (7) | 0.58316 (6) | 0.01100 (8) | |
H31 | 0.313 (2) | 0.2535 (16) | 0.5761 (14) | 0.016 (3)* | |
C4 | 0.11797 (10) | 0.40653 (8) | 0.62411 (7) | 0.01438 (9) | |
H41 | 0.026 (3) | 0.3701 (19) | 0.5613 (17) | 0.029 (4)* | |
H42 | 0.083 (2) | 0.3628 (16) | 0.7069 (14) | 0.016 (3)* | |
C5 | 0.35835 (9) | 0.42542 (7) | 0.45169 (6) | 0.01171 (8) |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.01516 (18) | 0.01114 (15) | 0.01178 (16) | −0.00143 (14) | −0.00067 (14) | 0.00226 (13) |
O2 | 0.0219 (2) | 0.01502 (18) | 0.01214 (17) | −0.00627 (17) | 0.00118 (16) | 0.00075 (14) |
O3 | 0.0290 (3) | 0.0197 (2) | 0.00954 (16) | −0.0079 (2) | −0.00345 (17) | −0.00014 (16) |
O4 | 0.0189 (2) | 0.0181 (2) | 0.01184 (17) | 0.00525 (17) | −0.00212 (16) | −0.00102 (15) |
N1 | 0.01473 (19) | 0.01349 (18) | 0.01067 (17) | 0.00236 (16) | −0.00341 (15) | −0.00062 (15) |
N2 | 0.01398 (18) | 0.01052 (16) | 0.01043 (16) | −0.00122 (15) | −0.00271 (14) | 0.00216 (14) |
C1 | 0.0136 (2) | 0.0168 (2) | 0.0120 (2) | −0.00288 (18) | −0.00241 (17) | 0.00189 (17) |
C2 | 0.01080 (18) | 0.01027 (17) | 0.00832 (16) | 0.00083 (15) | 0.00001 (14) | 0.00034 (14) |
C3 | 0.0143 (2) | 0.00986 (17) | 0.00887 (17) | −0.00077 (16) | −0.00143 (16) | 0.00072 (14) |
C4 | 0.0130 (2) | 0.0170 (2) | 0.0131 (2) | −0.00212 (19) | −0.00048 (17) | 0.00039 (18) |
C5 | 0.0152 (2) | 0.01121 (19) | 0.00875 (17) | −0.00030 (16) | −0.00020 (16) | 0.00028 (15) |
Geometric parameters (Å, º) top
O1—C2 | 1.2444 (8) | N2—C3 | 1.4543 (9) |
O2—C5 | 1.2585 (9) | N2—H4 | 0.826 (17) |
O3—C5 | 1.2590 (9) | C1—C2 | 1.5182 (10) |
O4—C4 | 1.4300 (10) | C1—H11 | 0.94 (2) |
O4—H5 | 0.831 (17) | C1—H12 | 0.929 (16) |
N1—C1 | 1.4796 (10) | C3—C4 | 1.5332 (10) |
N1—H1 | 0.872 (19) | C3—C5 | 1.5413 (9) |
N1—H2 | 0.924 (16) | C3—H31 | 0.973 (14) |
N1—H3 | 0.897 (15) | C4—H41 | 0.994 (18) |
N2—C2 | 1.3297 (8) | C4—H42 | 0.990 (15) |
C4—O4—H5 | 109.5 (12) | O1—C2—C1 | 121.57 (6) |
C1—N1—H1 | 104.5 (12) | N2—C2—C1 | 113.85 (6) |
C1—N1—H2 | 111.1 (9) | N2—C3—C4 | 111.02 (6) |
H1—N1—H2 | 109.9 (15) | N2—C3—C5 | 109.34 (5) |
C1—N1—H3 | 111.0 (9) | C4—C3—C5 | 110.35 (5) |
H1—N1—H3 | 113.8 (15) | N2—C3—H31 | 110.0 (9) |
H2—N1—H3 | 106.5 (14) | C4—C3—H31 | 107.9 (9) |
C2—N2—C3 | 122.97 (6) | C5—C3—H31 | 108.2 (9) |
C2—N2—H4 | 119.2 (12) | O4—C4—C3 | 110.94 (6) |
C3—N2—H4 | 117.7 (12) | O4—C4—H41 | 109.0 (10) |
N1—C1—C2 | 111.45 (6) | C3—C4—H41 | 109.7 (11) |
N1—C1—H11 | 110.1 (11) | O4—C4—H42 | 109.0 (8) |
C2—C1—H11 | 107.0 (12) | C3—C4—H42 | 112.1 (9) |
N1—C1—H12 | 110.0 (10) | H41—C4—H42 | 106.0 (14) |
C2—C1—H12 | 107.5 (11) | O2—C5—O3 | 126.73 (6) |
H11—C1—H12 | 110.7 (16) | O2—C5—C3 | 118.15 (6) |
O1—C2—N2 | 124.49 (6) | O3—C5—C3 | 115.10 (6) |
C3—N2—C2—O1 | −4.68 (10) | N2—C3—C4—O4 | 61.25 (7) |
C3—N2—C2—C1 | 172.06 (6) | C5—C3—C4—O4 | −60.15 (7) |
N1—C1—C2—O1 | −17.96 (9) | N2—C3—C5—O2 | −21.78 (8) |
N1—C1—C2—N2 | 165.19 (6) | C4—C3—C5—O2 | 100.61 (8) |
C2—N2—C3—C4 | 86.24 (8) | N2—C3—C5—O3 | 159.82 (6) |
C2—N2—C3—C5 | −151.77 (6) | C4—C3—C5—O3 | −77.79 (8) |
(glyser-5) Glycyl-L-serine top
Crystal data top
C5H10N2O4 | Dx = 1.549 Mg m−3 |
Mr = 162.15 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 8192 reflections |
a = 7.275 (2) Å | θ = 2–35° |
b = 9.097 (3) Å | µ = 0.13 mm−1 |
c = 10.507 (3) Å | T = 150 K |
V = 695.4 (4) Å3 | Sphere, colourless |
Z = 4 | 0.15 mm (radius) |
F(000) = 344 |
Data collection top
Siemens SMART CCD diffractometer | Rint = 0.026 |
Detector resolution: 8.3 pixels mm-1 | θmax = 55.3°, θmin = 3.0° |
Sets of exposures each taken over 0.6° ω rotation scans | h = −16→16 |
29051 measured reflections | k = −19→20 |
8738 independent reflections | l = −24→24 |
8058 reflections with I > 2σ(I) |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.074 | All H-atom parameters refined |
S = 1.16 | w = 1/[σ2(Fo2) + (0.0375P)2 + 0.020P] where P = (Fo2 + 2Fc2)/3 |
8738 reflections | (Δ/σ)max = 0.003 |
140 parameters | Δρmax = 0.40 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.41577 (4) | 0.21345 (3) | 0.80981 (2) | 0.01187 (3) | |
O2 | 0.45820 (4) | 0.53826 (3) | 0.44764 (3) | 0.01538 (4) | |
O3 | 0.28690 (5) | 0.35993 (4) | 0.35847 (3) | 0.01830 (5) | |
O4 | 0.10409 (4) | 0.56308 (3) | 0.63264 (3) | 0.01527 (4) | |
H5 | 0.1377 (18) | 0.5927 (13) | 0.7093 (12) | 0.026 (2)* | |
N1 | 0.66979 (4) | 0.32440 (3) | 0.97902 (3) | 0.01219 (4) | |
H1 | 0.7776 (18) | 0.3467 (13) | 1.0038 (11) | 0.031 (3)* | |
H2 | 0.5794 (16) | 0.3643 (11) | 1.0344 (10) | 0.023 (2)* | |
H3 | 0.6459 (15) | 0.2278 (11) | 0.9765 (9) | 0.019 (2)* | |
N2 | 0.44817 (4) | 0.40808 (3) | 0.67528 (2) | 0.01081 (3) | |
H4 | 0.4975 (15) | 0.4910 (11) | 0.6645 (9) | 0.0168 (19)* | |
C1 | 0.65612 (5) | 0.39033 (4) | 0.85064 (3) | 0.01324 (4) | |
H11 | 0.7613 (19) | 0.3670 (13) | 0.8025 (12) | 0.035 (3)* | |
H12 | 0.6411 (18) | 0.4909 (12) | 0.8584 (10) | 0.024 (2)* | |
C2 | 0.49272 (4) | 0.32973 (3) | 0.77765 (3) | 0.00905 (3) | |
C3 | 0.31186 (4) | 0.36012 (3) | 0.58320 (3) | 0.01028 (3) | |
H31 | 0.3127 (14) | 0.2534 (10) | 0.5756 (10) | 0.0171 (19)* | |
C4 | 0.11798 (4) | 0.40676 (4) | 0.62412 (3) | 0.01348 (4) | |
H41 | 0.0259 (16) | 0.3693 (12) | 0.5623 (11) | 0.025 (2)* | |
H42 | 0.0832 (15) | 0.3627 (11) | 0.7066 (10) | 0.019 (2)* | |
C5 | 0.35834 (4) | 0.42536 (3) | 0.45169 (3) | 0.01071 (4) |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.01425 (8) | 0.01031 (6) | 0.01106 (7) | −0.00133 (6) | −0.00075 (6) | 0.00248 (5) |
O2 | 0.02049 (10) | 0.01442 (8) | 0.01123 (7) | −0.00633 (8) | 0.00108 (7) | 0.00070 (6) |
O3 | 0.02787 (13) | 0.01828 (10) | 0.00876 (7) | −0.00797 (9) | −0.00341 (8) | −0.00011 (7) |
O4 | 0.01751 (9) | 0.01707 (9) | 0.01123 (7) | 0.00493 (7) | −0.00220 (7) | −0.00084 (7) |
N1 | 0.01388 (8) | 0.01276 (8) | 0.00994 (7) | 0.00247 (7) | −0.00340 (6) | −0.00070 (6) |
N2 | 0.01326 (8) | 0.00983 (7) | 0.00934 (7) | −0.00114 (6) | −0.00250 (6) | 0.00207 (6) |
C1 | 0.01266 (9) | 0.01574 (10) | 0.01133 (9) | −0.00280 (8) | −0.00227 (7) | 0.00188 (7) |
C2 | 0.00996 (7) | 0.00940 (7) | 0.00780 (7) | 0.00055 (6) | −0.00033 (6) | 0.00055 (6) |
C3 | 0.01344 (9) | 0.00921 (7) | 0.00819 (7) | −0.00079 (7) | −0.00130 (7) | 0.00062 (6) |
C4 | 0.01206 (9) | 0.01625 (10) | 0.01213 (9) | −0.00218 (8) | −0.00059 (7) | 0.00061 (8) |
C5 | 0.01405 (9) | 0.01018 (8) | 0.00790 (7) | −0.00055 (7) | −0.00036 (7) | 0.00029 (6) |
Geometric parameters (Å, º) top
O1—C2 | 1.2436 (5) | N2—C3 | 1.4525 (5) |
O2—C5 | 1.2588 (5) | N2—H4 | 0.843 (11) |
O3—C5 | 1.2585 (5) | C1—C2 | 1.5183 (5) |
O4—C4 | 1.4285 (6) | C1—H11 | 0.942 (14) |
O4—H5 | 0.884 (12) | C1—H12 | 0.925 (11) |
N1—C1 | 1.4795 (6) | C3—C4 | 1.5344 (6) |
N1—H1 | 0.851 (13) | C3—C5 | 1.5413 (6) |
N1—H2 | 0.950 (11) | C3—H31 | 0.974 (9) |
N1—H3 | 0.897 (10) | C4—H41 | 0.993 (11) |
N2—C2 | 1.3304 (5) | C4—H42 | 0.988 (10) |
C4—O4—H5 | 109.9 (8) | O1—C2—C1 | 121.60 (3) |
C1—N1—H1 | 104.1 (8) | N2—C2—C1 | 113.87 (3) |
C1—N1—H2 | 110.9 (6) | N2—C3—C4 | 110.97 (3) |
H1—N1—H2 | 111.1 (10) | N2—C3—C5 | 109.37 (3) |
C1—N1—H3 | 111.0 (6) | C4—C3—C5 | 110.27 (3) |
H1—N1—H3 | 114.9 (11) | N2—C3—H31 | 110.5 (6) |
H2—N1—H3 | 105.0 (10) | C4—C3—H31 | 107.7 (6) |
C2—N2—C3 | 122.95 (3) | C5—C3—H31 | 108.0 (6) |
C2—N2—H4 | 119.0 (7) | O4—C4—C3 | 110.97 (3) |
C3—N2—H4 | 118.0 (7) | O4—C4—H41 | 109.6 (6) |
N1—C1—C2 | 111.47 (3) | C3—C4—H41 | 110.0 (7) |
N1—C1—H11 | 110.1 (8) | O4—C4—H42 | 109.3 (6) |
C2—C1—H11 | 106.4 (8) | C3—C4—H42 | 111.7 (6) |
N1—C1—H12 | 109.2 (7) | H41—C4—H42 | 105.2 (9) |
C2—C1—H12 | 108.2 (8) | O3—C5—O2 | 126.72 (3) |
H11—C1—H12 | 111.4 (11) | O3—C5—C3 | 115.14 (3) |
O1—C2—N2 | 124.45 (3) | O2—C5—C3 | 118.11 (3) |
C3—N2—C2—O1 | −4.79 (5) | C5—C3—C4—O4 | −60.18 (3) |
N1—C1—C2—O1 | −17.94 (4) | N2—C3—C5—O3 | 159.80 (3) |
N1—C1—C2—N2 | 165.13 (3) | C4—C3—C5—O3 | −77.90 (4) |
C1—C2—N2—C3 | 172.04 (3) | N2—C3—C5—O2 | −21.76 (4) |
C2—N2—C3—C4 | 86.41 (4) | N2—C3—C4—O4 | 61.16 (3) |
C2—N2—C3—C5 | −151.73 (3) | C4—C3—C5—O2 | 100.53 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.851 (13) | 2.268 (12) | 2.8712 (7) | 128.0 (11) |
N1—H1···O2ii | 0.851 (13) | 2.267 (13) | 2.9991 (8) | 144.3 (11) |
N1—H2···O4iii | 0.950 (11) | 1.812 (11) | 2.7610 (7) | 176.3 (10) |
N1—H3···O2iv | 0.897 (10) | 2.045 (10) | 2.8899 (8) | 152.5 (9) |
N2—H4···O1v | 0.843 (11) | 2.137 (11) | 2.9532 (9) | 163.0 (9) |
O4—H5···O3iii | 0.884 (12) | 1.716 (12) | 2.5980 (8) | 176.1 (12) |
Symmetry codes: (i) x+1/2, −y+1/2, −z+2; (ii) −x+3/2, −y+1, z+1/2; (iii) −x+1/2, −y+1, z+1/2; (iv) −x+1, y−1/2, −z+3/2; (v) −x+1, y+1/2, −z+3/2. |