Pseudoatom databanks, collections of parameters from the multipole model of electron densities for various atom types, are used to replace the Independent Atom Model with the more accurate Transferable Aspherical Atom Model (TAAM) in crystal structure refinements. The databanks are also employed to reconstruct the electron density of a molecule, crystal or biomacromolecular complex in a fast yet accurate way and compute various properties such as the energy of electrostatic interactions, for example. A even faster but similarly accurate model for estimations of electrostatic energy exists called aug-PROmol [Bojarowski, Kumar & Dominiak (2016). ChemPhysChem, 17, 2455–2460]. A model analogous to aug-PROmol cannot be built from the current pseudoatom databanks, as they perform badly when truncated to the monopole level. Here, new strategies for multipole model refinements were sought, leading to better parametrization at the monopole level. This would allow the creation of a pseudoatom databank in a single route of model parametrization, which would be suitable for both crystal structure refinement and rapid electrostatic energy calculations. Here it is shown that the cumulative approach to multipole model refinements, as opposed to simultaneous or iterative refinements of all multipole model parameters (Pv, κ, Plm, κ′), leads to substantially different models of electron density. Cumulative refinement of two blocks of parameters, the first with Pv and κ and then the second with Plm and κ′, leads to the Pvκ|Plmκ′ model having promising properties. The Pvκ|Plmκ′ model is as good as the University at Buffalo DataBank (UBDB) in X-ray structure TAAM refinements and electrostatic energy estimations, especially for less polar molecules. When truncated to the monopole level, the Pvκ model has a chance to replace aug-PROmol in fast yet accurate electrostatics energy calculations, although some improvements in κ parametrization for polar functional groups are still needed. The Pvκ model is also a source of point charges which behave similarly to restrained electrostatic potential (RESP) charges in electrostatic interaction energy estimations.
Supporting information
CCDC references: 2205347; 2205348; 2205349
Program(s) used to refine structure: Volkov et al., (2006) for cyanuricXrayMMR. Molecular graphics: Volkov et al., (2006) for cyanuricXrayMMR. Software used to prepare material for publication: Volkov et al., (2006) for cyanuricXrayMMR.
1,3,5-triazine-2,4,6-triol (cyanuricXrayMMR)
top
Crystal data top
C3H3N3O3·2(H2O) | F(000) = 344 |
Mr = 165.12 | Dx = 1.716 Mg m−3 |
Monoclinic, I2/a | Mo Kα radiation, λ = 0.71073 Å |
a = 8.6385 (1) Å | Cell parameters from 61980 reflections |
b = 6.6817 Å | θ = 3.5–71.1° |
c = 11.6069 (1) Å | µ = 0.16 mm−1 |
β = 107.466 (1)° | T = 100 K |
V = 639.06 (1) Å3 | Block, monocrystal |
Z = 4 | 0.31 × 0.23 × 0.18 mm |
Data collection top
SuperNova, Single source at offset/far, Eos diffractometer | 5563 reflections with I > 2σ(I) |
ω scans | Rint = 0.025 |
Absorption correction: gaussian CrysAlisPro 1.171.39.43d (Rigaku Oxford Diffraction, 2018)
Numerical absorption correction based on gaussian integration over
a multifaceted crystal model
Empirical absorption correction using spherical harmonics,
implemented in SCALE3 ABSPACK scaling algorithm. | θmax = 71.3°, θmin = 3.6° |
Tmin = 0.383, Tmax = 1.000 | h = −22→22 |
6322 measured reflections | k = −17→17 |
6322 independent reflections | l = −30→30 |
Refinement top
Refinement on F2 | 6322 reflections |
Least-squares matrix: full | 198 parameters |
R[F2 > 2σ(F2)] = 0.017 | 0 restraints |
wR(F2) = 0.034 | w2 = 1/[s2(Fo2)] |
S = 1.00 | (Δ/σ)max = 0.00001 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O(1) | 0.386912 (5) | 0.905329 (7) | 0.360753 (4) | 0.013 | |
O(3) | 0.440445 (18) | 0.32683 (2) | 0.303288 (15) | 0.015 | |
O(2) | 0.25 | 0.31863 (5) | 0.5 | 0.022 | |
N(1) | 0.25 | 0.907601 (6) | 0.5 | 0.01 | |
N(2) | 0.319725 (4) | 0.608279 (5) | 0.428310 (3) | 0.01 | |
C(1) | 0.323272 (4) | 0.812549 (5) | 0.425531 (3) | 0.009 | |
C(2) | 0.25 | 0.500695 (7) | 0.5 | 0.011 | |
H(1) | 0.25 | 1.061753 | 0.5 | 0.031 | |
H(2) | 0.364282 | 0.530989 | 0.368302 | 0.029 | |
H(3A) | 0.482483 | 0.323377 | 0.235751 | 0.028 | |
H(3B) | 0.399208 | 0.196164 | 0.311328 | 0.028 | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O(1) | 0.019174 (15) | 0.009845 (13) | 0.016271 (14) | 0.000185 (7) | 0.012674 (15) | 0.002153 (8) |
O(3) | 0.02085 (6) | 0.01170 (5) | 0.01761 (6) | −0.00029 (4) | 0.01283 (5) | −0.00173 (3) |
O(2) | 0.03722 (8) | 0.00529 (8) | 0.03287 (8) | 0 | 0.02481 (7) | 0 |
N(1) | 0.013732 (13) | 0.005911 (11) | 0.012857 (15) | 0 | 0.008408 (12) | 0 |
N(2) | 0.013825 (11) | 0.006731 (9) | 0.012039 (12) | 0.000535 (5) | 0.007907 (9) | −0.000314 (6) |
C(1) | 0.011813 (11) | 0.007043 (10) | 0.010701 (12) | 0.000214 (6) | 0.006694 (9) | 0.000640 (6) |
C(2) | 0.016499 (17) | 0.005711 (12) | 0.014882 (19) | 0 | 0.009707 (15) | 0 |
H(1) | 0.04903 | 0.01103 | 0.043486 | 0 | 0.030924 | 0 |
H(2) | 0.043491 | 0.019626 | 0.033233 | 0.001246 | 0.027244 | −0.004734 |
H(3A) | 0.036568 | 0.027516 | 0.027662 | −0.000608 | 0.021374 | −0.0022 |
H(3B) | 0.036619 | 0.018967 | 0.033848 | −0.004027 | 0.018806 | −0.001134 |
Geometric parameters (Å, º) top
O(1)—C(1) | 1.2247 (1) | N(1)—H(1) | 1.0300 (1) |
O(3)—H(3A) | 0.9580 (2) | N(1)—H(1)i | 1.0300 (1) |
O(3)—H(3B) | 0.9580 (2) | N(2)—C(1) | 1.3658 (1) |
O(2)—C(2) | 1.2165 (6) | N(2)—C(2) | 1.3685 (1) |
O(2)—C(2)i | 1.2165 (6) | N(2)—C(2)i | 1.3685 (1) |
N(1)—C(1) | 1.3710 (1) | N(2)—H(2) | 1.0300 (1) |
N(1)—C(1)i | 1.3710 (1) | | |
| | | |
H(3A)—O(3)—H(3B) | 107.53 (2) | O(1)—C(1)—N(1) | 121.993 (7) |
C(1)—N(1)—C(1)i | 124.805 (7) | O(1)—C(1)—N(1)i | 121.993 (7) |
C(1)—N(1)—H(1) | 117.598 (4) | O(1)—C(1)—N(2) | 122.528 (6) |
C(1)—N(1)—H(1)i | 117.598 (4) | N(1)—C(1)—N(2) | 115.479 (5) |
C(1)i—N(1)—H(1) | 117.598 (4) | N(1)i—C(1)—N(2) | 115.479 (5) |
C(1)i—N(1)—H(1)i | 117.598 (4) | O(2)—C(2)—N(2) | 121.687 (3) |
C(1)—N(2)—C(2) | 123.805 (5) | O(2)—C(2)—N(2)i | 121.687 (3) |
C(1)—N(2)—C(2)i | 123.805 (5) | O(2)i—C(2)—N(2) | 121.687 (3) |
C(1)—N(2)—H(2) | 118.001 (5) | O(2)i—C(2)—N(2)i | 121.687 (3) |
C(2)—N(2)—H(2) | 118.022 (5) | N(2)—C(2)—N(2)i | 116.626 (7) |
C(2)i—N(2)—H(2) | 118.022 (5) | | |
Symmetry code: (i) −x+1/2, y, −z+1. |
Crystal data top
C20H14 | F(000) = 536 |
Mr = 254.31 | Dx = 1.256 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 110051 reflections |
a = 8.0808 (3) Å | θ = 60.7–2.7° |
b = 8.1662 (3) Å | µ = 0.07 mm−1 |
c = 20.3821 (8) Å | T = 100 K |
V = 1345.00 (9) Å3 | Block, colourless |
Z = 4 | 0.34 × 0.16 × 0.10 mm |
Data collection top
CCD detector diffractometer | 20485 independent reflections |
Radiation source: TXS rotating anode | 16182 reflections with I > 3σ(I) |
Multilayer optics monochromator | Rint = 0.035 |
ω–scans | θmax = 60.7°, θmin = 2.7° |
Absorption correction: multi-scan R.H. Blessing, Acta Cryst. (1995), A51, 33-38 | h = −19→19 |
Tmin = 0.956, Tmax = 0.992 | k = −19→20 |
110051 measured reflections | l = −49→49 |
Refinement top
Refinement on F2 | 14 restraints |
R[F2 > 2σ(F2)] = 0.022 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.046 | Weighting scheme based on measured s.u.'s |
S = 0.94 | (Δ/σ)max = −0.001 |
20485 reflections | Δρmax = 0.19 e Å−3 |
263 parameters | Δρmin = −0.20 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.43212 (2) | 0.38579 (2) | 0.174552 (9) | 0.011381 (13) | |
C2 | 0.24543 (2) | 0.59430 (2) | 0.112898 (9) | 0.010078 (12) | |
C3 | 0.53026 (2) | 0.51301 (2) | 0.136182 (9) | 0.010879 (12) | |
C4 | 0.42939 (2) | 0.62477 (2) | 0.102465 (8) | 0.010009 (12) | |
C5 | 0.49907 (2) | 0.74790 (2) | 0.064499 (9) | 0.011243 (13) | |
C6 | 0.67153 (2) | 0.76066 (3) | 0.060730 (9) | 0.012963 (14) | |
C7 | 0.77121 (2) | 0.65091 (3) | 0.094708 (10) | 0.014370 (15) | |
C8 | 0.70129 (2) | 0.52593 (3) | 0.132681 (10) | 0.013730 (14) | |
C9 | 0.31903 (2) | 0.48272 (2) | 0.220027 (9) | 0.011235 (13) | |
C10 | 0.21843 (2) | 0.59582 (2) | 0.186879 (9) | 0.010718 (12) | |
C11 | 0.10586 (2) | 0.69176 (3) | 0.221141 (10) | 0.013762 (14) | |
C12 | 0.09324 (3) | 0.67283 (3) | 0.289278 (11) | 0.016663 (18) | |
C13 | 0.19369 (3) | 0.56109 (3) | 0.322181 (11) | 0.017237 (19) | |
C14 | 0.30757 (3) | 0.46504 (3) | 0.287519 (9) | 0.014463 (16) | |
C15 | 0.31620 (2) | 0.30523 (2) | 0.125093 (9) | 0.011256 (13) | |
C16 | 0.21513 (2) | 0.41779 (2) | 0.091775 (9) | 0.010608 (12) | |
C17 | 0.10040 (3) | 0.36407 (3) | 0.045837 (10) | 0.013549 (15) | |
C18 | 0.08589 (3) | 0.19622 (3) | 0.033124 (11) | 0.016866 (18) | |
C19 | 0.18543 (3) | 0.08489 (3) | 0.066420 (12) | 0.017458 (17) | |
C20 | 0.30176 (3) | 0.13876 (2) | 0.112657 (11) | 0.014981 (15) | |
H1 | 0.5128 (6) | 0.2992 (6) | 0.1998 (3) | 0.02549 | |
H2 | 0.1677 (6) | 0.6821 (6) | 0.0867 (3) | 0.02294 | |
H5 | 0.4213 (6) | 0.8351 (6) | 0.0378 (3) | 0.02590 | |
H6 | 0.7289 (8) | 0.8568 (6) | 0.0316 (3) | 0.02975 | |
H7 | 0.9060 (4) | 0.6594 (8) | 0.0927 (3) | 0.03345 | |
H8 | 0.7795 (7) | 0.4412 (7) | 0.1591 (3) | 0.03111 | |
H11 | 0.0284 (7) | 0.7801 (7) | 0.1955 (3) | 0.02942 | |
H12 | 0.0028 (7) | 0.7446 (8) | 0.3164 (3) | 0.03507 | |
H13 | 0.1823 (9) | 0.5475 (9) | 0.37520 (10) | 0.03725 | |
H14 | 0.3855 (7) | 0.3753 (7) | 0.3125 (3) | 0.03017 | |
H17 | 0.0221 (7) | 0.4501 (6) | 0.0196 (3) | 0.02987 | |
H18 | −0.0065 (8) | 0.1536 (9) | −0.0023 (3) | 0.03774 | |
H19 | 0.1725 (9) | −0.0455 (4) | 0.0565 (3) | 0.03795 | |
H20 | 0.3807 (7) | 0.0515 (7) | 0.1388 (3) | 0.03247 | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.01130 (5) | 0.01138 (5) | 0.01146 (5) | 0.00234 (4) | −0.00074 (4) | 0.00127 (4) |
C2 | 0.00869 (4) | 0.01051 (5) | 0.01104 (5) | 0.00138 (4) | −0.00045 (4) | 0.00068 (4) |
C3 | 0.00874 (5) | 0.01242 (5) | 0.01148 (5) | 0.00197 (4) | −0.00045 (4) | 0.00080 (4) |
C4 | 0.00846 (4) | 0.01114 (5) | 0.01042 (5) | 0.00094 (4) | −0.00013 (4) | 0.00091 (4) |
C5 | 0.01049 (5) | 0.01266 (6) | 0.01059 (5) | −0.00026 (4) | 0.00001 (4) | 0.00113 (4) |
C6 | 0.01076 (5) | 0.01635 (6) | 0.01178 (5) | −0.00160 (5) | 0.00144 (4) | −0.00019 (5) |
C7 | 0.00879 (5) | 0.01892 (7) | 0.01540 (6) | 0.00020 (5) | 0.00092 (4) | −0.00074 (5) |
C8 | 0.00879 (5) | 0.01663 (6) | 0.01577 (6) | 0.00251 (5) | −0.00069 (4) | 0.00068 (5) |
C9 | 0.01203 (5) | 0.01197 (5) | 0.00970 (5) | 0.00076 (4) | 0.00022 (4) | 0.00063 (4) |
C10 | 0.01015 (5) | 0.01097 (5) | 0.01103 (5) | 0.00134 (4) | 0.00091 (4) | −0.00055 (4) |
C11 | 0.01204 (5) | 0.01392 (6) | 0.01533 (6) | 0.00173 (5) | 0.00228 (5) | −0.00294 (5) |
C12 | 0.01660 (7) | 0.01816 (7) | 0.01523 (7) | −0.00062 (6) | 0.00484 (5) | −0.00472 (5) |
C13 | 0.02040 (8) | 0.01993 (8) | 0.01138 (6) | −0.00222 (6) | 0.00362 (5) | −0.00186 (5) |
C14 | 0.01706 (7) | 0.01635 (7) | 0.00999 (5) | −0.00121 (6) | 0.00049 (5) | 0.00117 (4) |
C15 | 0.01179 (5) | 0.01002 (5) | 0.01196 (5) | 0.00171 (4) | 0.00000 (4) | −0.00025 (4) |
C16 | 0.01022 (5) | 0.01068 (5) | 0.01093 (5) | 0.00084 (4) | −0.00057 (4) | −0.00025 (4) |
C17 | 0.01343 (6) | 0.01402 (6) | 0.01319 (6) | −0.00036 (5) | −0.00251 (4) | −0.00114 (5) |
C18 | 0.01826 (7) | 0.01529 (7) | 0.01706 (7) | −0.00142 (6) | −0.00269 (6) | −0.00428 (5) |
C19 | 0.01958 (8) | 0.01220 (6) | 0.02060 (8) | 0.00036 (6) | −0.00082 (6) | −0.00462 (5) |
C20 | 0.01662 (7) | 0.01035 (6) | 0.01797 (7) | 0.00226 (5) | −0.00018 (5) | −0.00144 (5) |
H1 | 0.02573 | 0.02391 | 0.02684 | 0.00554 | −0.00515 | 0.00539 |
H2 | 0.01965 | 0.02245 | 0.02673 | 0.00486 | −0.00392 | 0.00503 |
H5 | 0.02111 | 0.02719 | 0.02941 | 0.00321 | −0.00227 | 0.00989 |
H6 | 0.02683 | 0.03212 | 0.03030 | −0.00895 | 0.00334 | 0.00943 |
H7 | 0.01188 | 0.04388 | 0.04459 | −0.00273 | 0.00280 | 0.00382 |
H8 | 0.02248 | 0.03302 | 0.03784 | 0.00710 | −0.00265 | 0.00868 |
H11 | 0.02576 | 0.03079 | 0.03172 | 0.01149 | −0.00108 | −0.00055 |
H12 | 0.03311 | 0.03924 | 0.03286 | 0.00796 | 0.01202 | −0.00938 |
H13 | 0.04969 | 0.04502 | 0.01705 | 0.00262 | 0.00601 | −0.00039 |
H14 | 0.03347 | 0.03343 | 0.02361 | 0.00488 | −0.00379 | 0.00649 |
H17 | 0.03093 | 0.02653 | 0.03214 | 0.00298 | −0.01019 | 0.00150 |
H18 | 0.04042 | 0.03548 | 0.03732 | −0.00732 | −0.01395 | −0.01070 |
H19 | 0.04496 | 0.01747 | 0.05142 | −0.00147 | −0.00872 | −0.00854 |
H20 | 0.03567 | 0.02089 | 0.04085 | 0.00675 | −0.01081 | 0.00176 |
Geometric parameters (Å, º) top
C1—C3 | 1.5231 (3) | C9—C14 | 1.3863 (3) |
C1—C9 | 1.5234 (3) | C10—C11 | 1.3889 (3) |
C1—C15 | 1.5253 (3) | C11—C12 | 1.4011 (3) |
C1—H1 | 1.090 (3) | C11—H11 | 1.089 (3) |
C2—C4 | 1.5222 (2) | C12—C13 | 1.3933 (4) |
C2—C10 | 1.5237 (3) | C12—H12 | 1.088 (3) |
C2—C16 | 1.5241 (3) | C13—C14 | 1.4004 (3) |
C2—H2 | 1.093 (3) | C13—H13 | 1.0902 (19) |
C3—C4 | 1.4034 (2) | C14—H14 | 1.092 (3) |
C3—C8 | 1.3878 (3) | C15—C16 | 1.4046 (3) |
C4—C5 | 1.3881 (3) | C15—C20 | 1.3878 (3) |
C5—C6 | 1.3996 (3) | C16—C17 | 1.3888 (3) |
C5—H5 | 1.095 (3) | C17—C18 | 1.3999 (3) |
C6—C7 | 1.3899 (3) | C17—H17 | 1.086 (3) |
C6—H6 | 1.089 (3) | C18—C19 | 1.3907 (4) |
C7—C8 | 1.4000 (3) | C18—H18 | 1.095 (4) |
C7—H7 | 1.092 (3) | C19—C20 | 1.4019 (3) |
C8—H8 | 1.080 (3) | C19—H19 | 1.089 (3) |
C9—C10 | 1.4037 (3) | C20—H20 | 1.095 (3) |
| | | |
C3—C1—C9 | 105.687 (14) | C2—C10—C9 | 112.833 (14) |
C3—C1—C15 | 105.939 (14) | C2—C10—C11 | 126.584 (15) |
C3—C1—H1 | 111.9 (3) | C9—C10—C11 | 120.562 (16) |
C9—C1—C15 | 104.939 (14) | C10—C11—C12 | 118.938 (16) |
C9—C1—H1 | 114.1 (3) | C10—C11—H11 | 120.6 (3) |
C15—C1—H1 | 113.5 (3) | C12—C11—H11 | 120.4 (3) |
C4—C2—C10 | 106.066 (13) | C13—C12—C11 | 120.458 (19) |
C4—C2—C16 | 105.783 (13) | C13—C12—H12 | 120.0 (3) |
C4—C2—H2 | 112.7 (3) | C11—C12—H12 | 119.6 (3) |
C10—C2—C16 | 105.324 (13) | C12—C13—C14 | 120.453 (19) |
C10—C2—H2 | 113.3 (3) | C12—C13—H13 | 119.6 (3) |
C16—C2—H2 | 113.0 (3) | C14—C13—H13 | 119.9 (3) |
C1—C3—C4 | 113.111 (14) | C9—C14—C13 | 119.090 (17) |
C1—C3—C8 | 126.639 (16) | C9—C14—H14 | 119.6 (3) |
C4—C3—C8 | 120.248 (15) | C13—C14—H14 | 121.3 (3) |
C2—C4—C3 | 113.113 (14) | C1—C15—C16 | 113.227 (14) |
C2—C4—C5 | 126.330 (14) | C1—C15—C20 | 126.501 (16) |
C3—C4—C5 | 120.557 (15) | C16—C15—C20 | 120.253 (16) |
C4—C5—C6 | 119.238 (15) | C2—C16—C15 | 112.886 (14) |
C4—C5—H5 | 121.0 (3) | C2—C16—C17 | 126.612 (15) |
C6—C5—H5 | 119.7 (3) | C15—C16—C17 | 120.492 (15) |
C7—C6—C5 | 120.114 (16) | C16—C17—C18 | 119.339 (16) |
C7—C6—H6 | 119.4 (3) | C16—C17—H17 | 121.1 (3) |
C5—C6—H6 | 120.5 (3) | C18—C17—H17 | 119.6 (3) |
C6—C7—C8 | 120.772 (17) | C19—C18—C17 | 120.087 (19) |
C6—C7—H7 | 121.2 (3) | C19—C18—H18 | 120.5 (4) |
C8—C7—H7 | 118.0 (3) | C17—C18—H18 | 119.4 (4) |
C3—C8—C7 | 119.065 (16) | C18—C19—C20 | 120.714 (19) |
C3—C8—H8 | 120.5 (3) | C18—C19—H19 | 119.6 (3) |
C7—C8—H8 | 120.4 (3) | C20—C19—H19 | 119.7 (3) |
C1—C9—C10 | 113.356 (14) | C15—C20—C19 | 119.112 (17) |
C1—C9—C14 | 126.137 (15) | C15—C20—H20 | 120.0 (3) |
C10—C9—C14 | 120.494 (16) | C19—C20—H20 | 120.9 (3) |
Crystal data top
C80H56 | F(000) = 322.296 |
Mr = 1017.3 | Dx = 1.245 Mg m−3 |
Orthorhombic, P212121 | Neutron radiation, λ = 0.69- 6.94 Å |
Hall symbol: P 2xab;2ybc;2zac | Cell parameters from 550 reflections |
a = 8.1019 (13) Å | θ = 2.0–78.1° |
b = 8.1922 (13) Å | µ = 0 mm−1 |
c = 20.442 (3) Å | T = 100 K |
V = 1356.8 (4) Å3 | Block |
Z = 1 | 8.00 × 2.00 × 2.00 mm |
Data collection top
SXD diffractometer | Rint = 0.0000 |
Radiation source: ISIS spallation source | θmax = 78.1°, θmin = 2.0° |
time–of–flight LAUE scans | h = −16→6 |
21802 measured reflections | k = −20→21 |
21802 independent reflections | l = −56→52 |
21749 reflections with I > 3σ(I) | |
Refinement top
Refinement on F | All H-atom parameters refined |
R[F2 > 2σ(F2)] = 0.063 | Weighting scheme based on measured s.u.'s w = 1/(σ2(F) + 0.0001F2) |
wR(F2) = 0.099 | (Δ/σ)max = 0.008 |
S = 4.39 | Δρmax = 4.37 e Å−3 |
21802 reflections | Δρmin = −2.09 e Å−3 |
316 parameters | Extinction correction: B-C type 1 Lorentzian isotropic (Becker & Coppens, 1974) |
0 restraints | Extinction coefficient: 76.3 (12) |
0 constraints | Absolute structure: 4176 of Friedel pairs used in the refinement |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.43235 (18) | 0.38552 (13) | 0.17460 (6) | 0.0098 (3) | |
C2 | 0.24548 (18) | 0.59429 (13) | 0.11278 (6) | 0.0085 (3) | |
C3 | 0.53057 (19) | 0.51308 (14) | 0.13614 (6) | 0.0100 (3) | |
C4 | 0.42955 (18) | 0.62482 (13) | 0.10246 (6) | 0.0087 (3) | |
C5 | 0.49920 (18) | 0.74799 (14) | 0.06439 (6) | 0.0097 (3) | |
C6 | 0.67148 (19) | 0.76072 (15) | 0.06070 (6) | 0.0117 (3) | |
C7 | 0.77144 (19) | 0.65059 (16) | 0.09477 (7) | 0.0129 (3) | |
C8 | 0.7014 (2) | 0.52599 (15) | 0.13273 (6) | 0.0124 (3) | |
C9 | 0.31878 (19) | 0.48258 (13) | 0.22011 (6) | 0.0100 (3) | |
C10 | 0.21858 (18) | 0.59596 (13) | 0.18690 (6) | 0.0094 (3) | |
C11 | 0.1062 (2) | 0.69154 (15) | 0.22122 (6) | 0.0126 (3) | |
C12 | 0.0937 (2) | 0.67289 (16) | 0.28936 (6) | 0.0150 (4) | |
C13 | 0.1938 (2) | 0.56118 (15) | 0.32224 (6) | 0.0160 (4) | |
C14 | 0.3073 (2) | 0.46511 (15) | 0.28759 (6) | 0.0130 (3) | |
C15 | 0.3163 (2) | 0.30510 (13) | 0.12510 (6) | 0.0099 (3) | |
C16 | 0.21506 (18) | 0.41781 (13) | 0.09175 (6) | 0.0092 (3) | |
C17 | 0.1003 (2) | 0.36432 (15) | 0.04584 (6) | 0.0122 (3) | |
C18 | 0.0857 (2) | 0.19627 (15) | 0.03309 (6) | 0.0152 (4) | |
C19 | 0.1851 (2) | 0.08492 (15) | 0.06637 (7) | 0.0159 (3) | |
C20 | 0.3013 (2) | 0.13877 (14) | 0.11270 (6) | 0.0140 (3) | |
H1 | 0.5103 (5) | 0.2978 (3) | 0.20030 (14) | 0.0242 (8) | |
H2 | 0.1679 (4) | 0.6826 (3) | 0.08712 (14) | 0.0217 (8) | |
H5 | 0.4194 (4) | 0.8344 (4) | 0.03856 (15) | 0.0247 (8) | |
H6 | 0.7274 (5) | 0.8582 (4) | 0.03215 (15) | 0.0285 (9) | |
H7 | 0.9048 (5) | 0.6626 (4) | 0.09234 (18) | 0.0323 (10) | |
H8 | 0.7799 (5) | 0.4405 (4) | 0.15877 (18) | 0.0299 (10) | |
H11 | 0.0273 (5) | 0.7799 (4) | 0.19625 (16) | 0.0282 (9) | |
H12 | 0.0033 (5) | 0.7459 (4) | 0.31613 (17) | 0.0339 (11) | |
H13 | 0.1848 (6) | 0.5481 (5) | 0.37520 (15) | 0.0361 (11) | |
H14 | 0.3839 (5) | 0.3762 (4) | 0.31299 (15) | 0.0290 (10) | |
H17 | 0.0210 (5) | 0.4493 (4) | 0.01979 (17) | 0.0287 (10) | |
H18 | −0.0038 (6) | 0.1535 (4) | −0.00316 (18) | 0.0366 (12) | |
H19 | 0.1737 (6) | −0.0448 (3) | 0.0564 (2) | 0.0368 (11) | |
H20 | 0.3802 (5) | 0.0510 (4) | 0.13840 (17) | 0.0313 (10) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0076 (7) | 0.0114 (4) | 0.0102 (4) | 0.0031 (4) | −0.0006 (4) | 0.0012 (3) |
C2 | 0.0055 (6) | 0.0098 (4) | 0.0104 (4) | 0.0012 (4) | −0.0004 (4) | 0.0007 (3) |
C3 | 0.0064 (7) | 0.0120 (4) | 0.0116 (4) | 0.0018 (4) | −0.0008 (4) | 0.0005 (3) |
C4 | 0.0052 (6) | 0.0106 (4) | 0.0103 (4) | 0.0008 (4) | −0.0008 (4) | 0.0010 (3) |
C5 | 0.0067 (7) | 0.0124 (4) | 0.0101 (4) | 0.0001 (4) | 0.0002 (4) | 0.0007 (3) |
C6 | 0.0083 (7) | 0.0154 (4) | 0.0114 (4) | −0.0012 (4) | 0.0014 (5) | 0.0000 (4) |
C7 | 0.0045 (7) | 0.0187 (5) | 0.0155 (5) | 0.0004 (4) | 0.0011 (5) | −0.0005 (4) |
C8 | 0.0062 (7) | 0.0157 (5) | 0.0153 (5) | 0.0027 (4) | −0.0009 (5) | 0.0003 (4) |
C9 | 0.0100 (7) | 0.0113 (4) | 0.0087 (4) | 0.0008 (4) | −0.0001 (4) | 0.0007 (3) |
C10 | 0.0069 (7) | 0.0103 (4) | 0.0110 (4) | 0.0017 (4) | 0.0006 (4) | −0.0007 (3) |
C11 | 0.0098 (7) | 0.0131 (4) | 0.0149 (5) | 0.0015 (4) | 0.0021 (5) | −0.0030 (4) |
C12 | 0.0127 (8) | 0.0173 (5) | 0.0149 (5) | −0.0005 (5) | 0.0048 (5) | −0.0044 (4) |
C13 | 0.0179 (9) | 0.0191 (5) | 0.0109 (5) | −0.0016 (5) | 0.0033 (5) | −0.0017 (4) |
C14 | 0.0134 (8) | 0.0160 (5) | 0.0097 (4) | −0.0004 (5) | −0.0001 (5) | 0.0012 (3) |
C15 | 0.0085 (7) | 0.0094 (4) | 0.0120 (4) | 0.0018 (4) | 0.0000 (4) | −0.0001 (3) |
C16 | 0.0072 (7) | 0.0102 (4) | 0.0103 (4) | 0.0011 (4) | −0.0005 (4) | 0.0001 (3) |
C17 | 0.0099 (7) | 0.0138 (4) | 0.0128 (4) | −0.0006 (4) | −0.0024 (5) | −0.0010 (3) |
C18 | 0.0141 (8) | 0.0146 (5) | 0.0169 (5) | −0.0008 (5) | −0.0023 (5) | −0.0045 (4) |
C19 | 0.0157 (8) | 0.0112 (4) | 0.0208 (5) | 0.0007 (5) | −0.0008 (6) | −0.0041 (4) |
C20 | 0.0147 (8) | 0.0095 (4) | 0.0178 (5) | 0.0020 (4) | 0.0010 (5) | −0.0014 (4) |
H1 | 0.0227 (18) | 0.0234 (12) | 0.0266 (12) | 0.0058 (11) | −0.0053 (12) | 0.0055 (10) |
H2 | 0.0166 (16) | 0.0219 (11) | 0.0265 (12) | 0.0051 (10) | −0.0040 (11) | 0.0051 (9) |
H5 | 0.0181 (18) | 0.0267 (12) | 0.0292 (13) | 0.0034 (11) | −0.0024 (13) | 0.0100 (10) |
H6 | 0.024 (2) | 0.0317 (14) | 0.0301 (14) | −0.0089 (13) | 0.0033 (14) | 0.0096 (11) |
H7 | 0.0087 (18) | 0.0436 (18) | 0.0445 (18) | −0.0026 (13) | 0.0028 (16) | 0.0039 (14) |
H8 | 0.019 (2) | 0.0326 (14) | 0.0377 (16) | 0.0073 (13) | −0.0027 (15) | 0.0088 (11) |
H11 | 0.023 (2) | 0.0304 (14) | 0.0315 (14) | 0.0118 (13) | −0.0012 (13) | −0.0005 (11) |
H12 | 0.030 (2) | 0.0389 (17) | 0.0327 (15) | 0.0082 (15) | 0.0121 (15) | −0.0094 (13) |
H13 | 0.047 (3) | 0.0447 (18) | 0.0167 (11) | 0.0028 (18) | 0.0060 (15) | −0.0004 (11) |
H14 | 0.031 (2) | 0.0330 (14) | 0.0233 (12) | 0.0051 (14) | −0.0039 (14) | 0.0066 (10) |
H17 | 0.028 (2) | 0.0260 (13) | 0.0320 (15) | 0.0032 (12) | −0.0104 (14) | 0.0015 (11) |
H18 | 0.038 (3) | 0.0351 (17) | 0.0372 (17) | −0.0072 (16) | −0.0142 (17) | −0.0108 (13) |
H19 | 0.042 (2) | 0.0169 (11) | 0.051 (2) | −0.0013 (13) | −0.0089 (19) | −0.0086 (12) |
H20 | 0.033 (2) | 0.0204 (11) | 0.0408 (17) | 0.0070 (12) | −0.0110 (16) | 0.0018 (11) |
Geometric parameters (Å, º) top
C1—C3 | 1.5310 (17) | C9—C10 | 1.4082 (18) |
C1—C9 | 1.5313 (19) | C9—C14 | 1.3900 (18) |
C1—C15 | 1.5307 (19) | C10—C11 | 1.3905 (19) |
C2—C4 | 1.526 (2) | C11—C12 | 1.4049 (18) |
C2—C10 | 1.5308 (18) | C12—C13 | 1.395 (2) |
C2—C16 | 1.5285 (13) | C13—C14 | 1.403 (2) |
C3—C4 | 1.4079 (18) | C15—C16 | 1.4105 (18) |
C3—C8 | 1.390 (2) | C15—C20 | 1.3911 (13) |
C4—C5 | 1.3940 (16) | C16—C17 | 1.392 (2) |
C5—C6 | 1.402 (2) | C17—C18 | 1.406 (2) |
C6—C7 | 1.398 (2) | C18—C19 | 1.394 (2) |
C7—C8 | 1.402 (2) | C19—C20 | 1.406 (2) |
| | | |
C3—C1—C9 | 105.64 (8) | C10—C9—C14 | 120.52 (12) |
C3—C1—C15 | 105.87 (10) | C2—C10—C9 | 112.90 (11) |
C9—C1—C15 | 104.82 (12) | C2—C10—C11 | 126.71 (11) |
C4—C2—C10 | 105.93 (11) | C9—C10—C11 | 120.36 (11) |
C4—C2—C16 | 105.87 (10) | C10—C11—C12 | 119.11 (12) |
C10—C2—C16 | 105.31 (8) | C11—C12—C13 | 120.45 (13) |
C1—C3—C4 | 113.12 (13) | C12—C13—C14 | 120.39 (11) |
C1—C3—C8 | 126.53 (12) | C9—C14—C13 | 119.16 (12) |
C4—C3—C8 | 120.36 (12) | C1—C15—C16 | 113.27 (8) |
C2—C4—C3 | 113.22 (10) | C1—C15—C20 | 126.56 (11) |
C2—C4—C5 | 126.26 (12) | C16—C15—C20 | 120.15 (12) |
C3—C4—C5 | 120.52 (14) | C2—C16—C15 | 112.93 (11) |
C4—C5—C6 | 119.15 (12) | C2—C16—C17 | 126.52 (12) |
C5—C6—C7 | 120.13 (11) | C15—C16—C17 | 120.54 (10) |
C6—C7—C8 | 120.75 (15) | C16—C17—C18 | 119.30 (13) |
C3—C8—C7 | 119.08 (13) | C17—C18—C19 | 120.11 (13) |
C1—C9—C10 | 113.35 (11) | C18—C19—C20 | 120.64 (10) |
C1—C9—C14 | 126.12 (11) | C15—C20—C19 | 119.25 (11) |