




Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536812041591/rz5009sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S1600536812041591/rz5009Isup2.hkl |
![]() | Chemdraw file https://doi.org/10.1107/S1600536812041591/rz5009Isup3.cdx |
CCDC reference: 909720
Key indicators
- Single-crystal X-ray study
- T = 200 K
- Mean
(C-C) = 0.004 Å
- R factor = 0.030
- wR factor = 0.081
- Data-to-parameter ratio = 12.2
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors of B1 PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors of B2 PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors of C17 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 2
Alert level G PLAT005_ALERT_5_G No _iucr_refine_instructions_details in CIF .... ? PLAT083_ALERT_2_G SHELXL Second Parameter in WGHT Unusually Large. 11.61 PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 27
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 4 ALERT level C = Check. Ensure it is not caused by an omission or oversight 3 ALERT level G = General information/check it is not something unexpected 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 4 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
Solid [Pd(MeCN)4](BF4)2 (71 mg, 0.16 mmol) was added at 25 °C to a stirred mixture of MeCN (2.5 ml) and CHCl3 (2.5 ml) containing 2,2'-bipyrimidine (50 mg, 0.32 mmol). The resulting mixture quickly turned yellow, and a yellow solid began to precipitate. After the suspension had been stirred for 2 h, volatiles were removed by evaporation under reduced pressure, and the residual yellow solid was washed with MeCN. Crystals of the title complex were obtained in 70% yield by allowing vapors of MeCN to diffuse slowly into a solution of the yellow solid in DMSO.
All H-atoms were placed in calculated positions (C—H 0.95–0.98 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2Ueq(C) for hydrogen atoms bonded to sp2-hybridized carbon atoms and 1.5Ueq(C) for hydrogen atoms bonded to sp3-hybridized carbon atoms.
Data collection: SMART (Bruker, 2003); cell refinement: SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Materials Studio (Accelrys, 2002); software used to prepare material for publication: UdMX (Maris, 2004) and publCIF (Westrip, 2010).
[Pd(C8H6N4)2](BF4)2·C2H3N | F(000) = 2512 |
Mr = 637.41 | Dx = 1.840 Mg m−3 |
Monoclinic, C2/c | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -C 2yc | Cell parameters from 20829 reflections |
a = 18.0686 (4) Å | θ = 3.6–68.8° |
b = 18.1126 (4) Å | µ = 7.38 mm−1 |
c = 14.8351 (3) Å | T = 200 K |
β = 108.613 (1)° | Block, yellow |
V = 4601.13 (17) Å3 | 0.20 × 0.11 × 0.10 mm |
Z = 8 |
Bruker SMART 6000 diffractometer | 4246 independent reflections |
Radiation source: Rotating anode | 4006 reflections with I > 2σ(I) |
Montel 200 optics monochromator | Rint = 0.031 |
Detector resolution: 5.5 pixels mm-1 | θmax = 68.9°, θmin = 3.6° |
ω scans | h = −21→21 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | k = −20→21 |
Tmin = 0.311, Tmax = 0.478 | l = −17→17 |
31076 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.081 | w = 1/[σ2(Fo2) + (0.0458P)2 + 11.6117P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.002 |
4246 reflections | Δρmax = 1.07 e Å−3 |
347 parameters | Δρmin = −0.75 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.000355 (19) |
[Pd(C8H6N4)2](BF4)2·C2H3N | V = 4601.13 (17) Å3 |
Mr = 637.41 | Z = 8 |
Monoclinic, C2/c | Cu Kα radiation |
a = 18.0686 (4) Å | µ = 7.38 mm−1 |
b = 18.1126 (4) Å | T = 200 K |
c = 14.8351 (3) Å | 0.20 × 0.11 × 0.10 mm |
β = 108.613 (1)° |
Bruker SMART 6000 diffractometer | 4246 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 4006 reflections with I > 2σ(I) |
Tmin = 0.311, Tmax = 0.478 | Rint = 0.031 |
31076 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.081 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0458P)2 + 11.6117P] where P = (Fo2 + 2Fc2)/3 |
4246 reflections | Δρmax = 1.07 e Å−3 |
347 parameters | Δρmin = −0.75 e Å−3 |
Experimental. X-ray crystallographic data for I were collected from a single-crystal sample, which was mounted on a loop fiber. Data were collected using a Bruker Platform diffractometer, equipped with a Bruker SMART 4 K Charged-Coupled Device (CCD) Area Detector using the program APEX2 and a Nonius FR591 rotating anode equipped with Montel 200 optics. The crystal-to-detector distance was 5.0 cm, and the data collection was carried out in 512 x 512 pixel mode. The initial unit-cell parameters were determined by a least-squares fit of the angular setting of strong reflections, collected by a 10.0 degree scan in 33 frames over four different parts of the reciprocal space (132 frames total). One complete sphere of data was collected to better than 0.80 Å resolution. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l. s. planes) were estimated using the full covariance matrix. The cell e.s.d.'s were taken into account individually in the estimation of e.s.d.'s in distances, angles, and torsion angles; correlations between e.s.d.'s in cell parameters were only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s was used for estimating e.s.d.'s involving l. s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness-of-fit S are based on F2 and conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Pd1 | 0.5000 | 0.336135 (12) | 0.2500 | 0.02227 (10) | |
N1 | 0.44850 (12) | 0.40551 (11) | 0.13874 (15) | 0.0244 (4) | |
C1 | 0.46387 (15) | 0.47710 (14) | 0.13047 (19) | 0.0294 (5) | |
H1 | 0.5006 | 0.5018 | 0.1821 | 0.035* | |
C2 | 0.42721 (17) | 0.51534 (15) | 0.0482 (2) | 0.0359 (6) | |
H2 | 0.4374 | 0.5662 | 0.0422 | 0.043* | |
C3 | 0.37529 (18) | 0.47724 (17) | −0.0249 (2) | 0.0408 (7) | |
H3 | 0.3476 | 0.5032 | −0.0812 | 0.049* | |
N3 | 0.36210 (15) | 0.40471 (13) | −0.01994 (16) | 0.0369 (5) | |
C4 | 0.39986 (14) | 0.37213 (14) | 0.06120 (17) | 0.0277 (5) | |
C5 | 0.38836 (14) | 0.29190 (14) | 0.07200 (17) | 0.0269 (5) | |
N5 | 0.42993 (12) | 0.26406 (11) | 0.15719 (15) | 0.0271 (4) | |
C6 | 0.41328 (16) | 0.19506 (14) | 0.1769 (2) | 0.0364 (6) | |
H6 | 0.4384 | 0.1749 | 0.2381 | 0.044* | |
C7 | 0.35997 (17) | 0.15308 (15) | 0.1090 (2) | 0.0399 (7) | |
H7 | 0.3477 | 0.1041 | 0.1223 | 0.048* | |
C8 | 0.32526 (15) | 0.18455 (16) | 0.0217 (2) | 0.0367 (6) | |
H8 | 0.2909 | 0.1555 | −0.0272 | 0.044* | |
N8 | 0.33807 (13) | 0.25488 (13) | 0.00285 (16) | 0.0340 (5) | |
Pd2 | 0.0000 | 0.339164 (12) | 0.2500 | 0.02379 (10) | |
N9 | 0.06638 (12) | 0.25370 (11) | 0.23195 (15) | 0.0278 (4) | |
C9 | 0.13999 (16) | 0.25769 (15) | 0.2297 (2) | 0.0349 (6) | |
H9 | 0.1621 | 0.3045 | 0.2248 | 0.042* | |
C10 | 0.18357 (18) | 0.19496 (17) | 0.2344 (2) | 0.0429 (7) | |
H10 | 0.2356 | 0.1974 | 0.2327 | 0.051* | |
C11 | 0.14925 (18) | 0.12859 (16) | 0.2417 (2) | 0.0433 (7) | |
H11 | 0.1779 | 0.0844 | 0.2428 | 0.052* | |
N11 | 0.07683 (15) | 0.12380 (12) | 0.24733 (18) | 0.0382 (5) | |
C12 | 0.03914 (15) | 0.18649 (14) | 0.24370 (18) | 0.0287 (5) | |
N12 | 0.04299 (12) | 0.42452 (11) | 0.19429 (15) | 0.0257 (4) | |
C13 | 0.07712 (16) | 0.42029 (14) | 0.12669 (19) | 0.0314 (6) | |
H13 | 0.0896 | 0.3733 | 0.1070 | 0.038* | |
C14 | 0.09431 (17) | 0.48312 (16) | 0.0854 (2) | 0.0364 (6) | |
H14 | 0.1184 | 0.4806 | 0.0372 | 0.044* | |
C15 | 0.07533 (17) | 0.54960 (16) | 0.1164 (2) | 0.0393 (6) | |
H15 | 0.0890 | 0.5937 | 0.0909 | 0.047* | |
N15 | 0.03809 (14) | 0.55468 (12) | 0.18145 (17) | 0.0349 (5) | |
C16 | 0.02226 (14) | 0.49198 (13) | 0.21627 (18) | 0.0274 (5) | |
B1 | 0.2913 (2) | 0.4231 (2) | 0.2178 (3) | 0.0447 (9) | |
F1 | 0.27658 (12) | 0.46150 (13) | 0.13349 (14) | 0.0621 (5) | |
F2 | 0.36425 (10) | 0.43957 (11) | 0.27788 (13) | 0.0496 (5) | |
F3 | 0.28788 (19) | 0.34813 (14) | 0.19523 (19) | 0.0962 (10) | |
F4 | 0.23745 (14) | 0.4387 (3) | 0.26137 (17) | 0.1125 (13) | |
B2 | 0.0691 (2) | 0.24786 (18) | 0.5158 (2) | 0.0373 (7) | |
F5 | 0.09817 (13) | 0.24491 (16) | 0.44108 (15) | 0.0749 (7) | |
F6 | 0.00661 (12) | 0.29637 (11) | 0.49624 (17) | 0.0644 (6) | |
F7 | 0.04445 (17) | 0.17898 (12) | 0.5299 (2) | 0.0885 (9) | |
F8 | 0.12677 (16) | 0.27183 (14) | 0.59487 (17) | 0.0869 (8) | |
N16 | 0.35521 (18) | 0.04534 (18) | 0.5904 (2) | 0.0563 (8) | |
C17 | 0.3079 (2) | 0.08800 (18) | 0.5644 (2) | 0.0446 (7) | |
C18 | 0.2469 (2) | 0.1432 (2) | 0.5312 (4) | 0.0771 (13) | |
H18A | 0.2098 | 0.1274 | 0.4703 | 0.116* | |
H18B | 0.2703 | 0.1905 | 0.5229 | 0.116* | |
H18C | 0.2195 | 0.1489 | 0.5781 | 0.116* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd1 | 0.02316 (15) | 0.01678 (15) | 0.02304 (15) | 0.000 | 0.00197 (10) | 0.000 |
N1 | 0.0241 (10) | 0.0227 (10) | 0.0262 (10) | 0.0030 (8) | 0.0075 (8) | 0.0017 (8) |
C1 | 0.0293 (12) | 0.0249 (13) | 0.0352 (14) | 0.0010 (10) | 0.0118 (11) | 0.0013 (10) |
C2 | 0.0417 (15) | 0.0280 (14) | 0.0422 (15) | 0.0048 (11) | 0.0193 (13) | 0.0103 (11) |
C3 | 0.0503 (17) | 0.0391 (16) | 0.0316 (14) | 0.0103 (13) | 0.0112 (12) | 0.0129 (12) |
N3 | 0.0430 (13) | 0.0380 (13) | 0.0259 (11) | 0.0062 (10) | 0.0055 (10) | 0.0034 (9) |
C4 | 0.0266 (12) | 0.0297 (13) | 0.0269 (12) | 0.0028 (10) | 0.0086 (10) | −0.0010 (10) |
C5 | 0.0244 (12) | 0.0282 (13) | 0.0277 (12) | 0.0023 (10) | 0.0076 (10) | −0.0030 (10) |
N5 | 0.0262 (10) | 0.0215 (10) | 0.0294 (10) | 0.0004 (8) | 0.0030 (8) | −0.0033 (8) |
C6 | 0.0362 (14) | 0.0235 (13) | 0.0415 (15) | −0.0010 (11) | 0.0014 (12) | 0.0010 (11) |
C7 | 0.0330 (15) | 0.0244 (13) | 0.0557 (18) | −0.0030 (11) | 0.0050 (13) | −0.0044 (12) |
C8 | 0.0276 (13) | 0.0324 (14) | 0.0448 (16) | −0.0021 (11) | 0.0041 (11) | −0.0160 (12) |
N8 | 0.0284 (11) | 0.0375 (13) | 0.0320 (11) | 0.0020 (9) | 0.0039 (9) | −0.0083 (10) |
Pd2 | 0.02831 (16) | 0.01530 (15) | 0.03000 (16) | 0.000 | 0.01245 (11) | 0.000 |
N9 | 0.0341 (11) | 0.0218 (10) | 0.0297 (10) | 0.0020 (9) | 0.0133 (9) | 0.0000 (8) |
C9 | 0.0360 (14) | 0.0297 (14) | 0.0423 (15) | 0.0015 (11) | 0.0169 (12) | 0.0030 (11) |
C10 | 0.0393 (16) | 0.0415 (17) | 0.0533 (18) | 0.0082 (13) | 0.0224 (14) | 0.0001 (14) |
C11 | 0.0466 (17) | 0.0298 (15) | 0.0564 (18) | 0.0111 (12) | 0.0204 (14) | −0.0024 (13) |
N11 | 0.0448 (13) | 0.0221 (11) | 0.0487 (14) | 0.0042 (10) | 0.0161 (11) | −0.0022 (10) |
C12 | 0.0351 (14) | 0.0219 (12) | 0.0296 (13) | −0.0001 (10) | 0.0109 (10) | −0.0011 (10) |
N12 | 0.0276 (11) | 0.0205 (10) | 0.0288 (10) | −0.0008 (8) | 0.0084 (9) | 0.0008 (8) |
C13 | 0.0348 (14) | 0.0276 (13) | 0.0332 (14) | 0.0006 (10) | 0.0129 (11) | 0.0015 (10) |
C14 | 0.0379 (14) | 0.0366 (15) | 0.0375 (14) | −0.0008 (12) | 0.0161 (12) | 0.0067 (12) |
C15 | 0.0422 (15) | 0.0306 (14) | 0.0464 (16) | −0.0036 (12) | 0.0161 (13) | 0.0106 (12) |
N15 | 0.0413 (13) | 0.0222 (11) | 0.0414 (13) | −0.0026 (9) | 0.0136 (10) | 0.0031 (9) |
C16 | 0.0291 (12) | 0.0197 (12) | 0.0303 (12) | −0.0006 (10) | 0.0049 (10) | −0.0003 (10) |
B1 | 0.0313 (17) | 0.070 (2) | 0.0338 (17) | −0.0178 (16) | 0.0122 (14) | −0.0100 (16) |
F1 | 0.0564 (12) | 0.0816 (15) | 0.0497 (11) | 0.0054 (11) | 0.0191 (9) | 0.0139 (10) |
F2 | 0.0344 (9) | 0.0654 (12) | 0.0463 (10) | −0.0109 (8) | 0.0090 (8) | −0.0200 (9) |
F3 | 0.128 (2) | 0.0692 (16) | 0.0691 (16) | −0.0514 (16) | −0.0002 (15) | −0.0088 (12) |
F4 | 0.0420 (12) | 0.251 (4) | 0.0502 (13) | 0.0151 (18) | 0.0228 (11) | −0.0055 (18) |
B2 | 0.0413 (17) | 0.0302 (16) | 0.0408 (17) | 0.0011 (13) | 0.0135 (14) | 0.0002 (13) |
F5 | 0.0584 (13) | 0.119 (2) | 0.0545 (12) | 0.0111 (13) | 0.0274 (10) | 0.0160 (13) |
F6 | 0.0525 (12) | 0.0496 (12) | 0.0871 (15) | 0.0149 (9) | 0.0167 (11) | 0.0021 (11) |
F7 | 0.105 (2) | 0.0334 (10) | 0.157 (3) | −0.0061 (12) | 0.084 (2) | −0.0008 (14) |
F8 | 0.0868 (17) | 0.0793 (17) | 0.0655 (14) | 0.0202 (13) | −0.0165 (12) | −0.0219 (12) |
N16 | 0.0577 (18) | 0.070 (2) | 0.0405 (15) | 0.0225 (16) | 0.0146 (13) | −0.0056 (14) |
C17 | 0.0408 (17) | 0.052 (2) | 0.0403 (17) | 0.0031 (14) | 0.0113 (14) | −0.0006 (13) |
C18 | 0.047 (2) | 0.060 (2) | 0.117 (4) | 0.0100 (19) | 0.017 (2) | 0.030 (3) |
Pd1—N5i | 2.022 (2) | C9—H9 | 0.9500 |
Pd1—N5 | 2.022 (2) | C10—C11 | 1.372 (5) |
Pd1—N1 | 2.047 (2) | C10—H10 | 0.9500 |
Pd1—N1i | 2.047 (2) | C11—N11 | 1.340 (4) |
N1—C1 | 1.340 (3) | C11—H11 | 0.9500 |
N1—C4 | 1.348 (3) | N11—C12 | 1.316 (3) |
C1—C2 | 1.375 (4) | C12—C12ii | 1.485 (5) |
C1—H1 | 0.9500 | N12—C13 | 1.337 (3) |
C2—C3 | 1.372 (4) | N12—C16 | 1.348 (3) |
C2—H2 | 0.9500 | C13—C14 | 1.374 (4) |
C3—N3 | 1.341 (4) | C13—H13 | 0.9500 |
C3—H3 | 0.9500 | C14—C15 | 1.371 (4) |
N3—C4 | 1.318 (3) | C14—H14 | 0.9500 |
C4—C5 | 1.484 (4) | C15—N15 | 1.345 (4) |
C5—N8 | 1.316 (3) | C15—H15 | 0.9500 |
C5—N5 | 1.345 (3) | N15—C16 | 1.316 (3) |
N5—C6 | 1.339 (3) | C16—C16ii | 1.471 (5) |
C6—C7 | 1.378 (4) | B1—F4 | 1.357 (4) |
C6—H6 | 0.9500 | B1—F2 | 1.368 (4) |
C7—C8 | 1.369 (4) | B1—F1 | 1.381 (4) |
C7—H7 | 0.9500 | B1—F3 | 1.396 (5) |
C8—N8 | 1.340 (4) | B2—F7 | 1.363 (4) |
C8—H8 | 0.9500 | B2—F8 | 1.368 (4) |
Pd2—N12 | 2.021 (2) | B2—F5 | 1.371 (4) |
Pd2—N12ii | 2.021 (2) | B2—F6 | 1.386 (4) |
Pd2—N9 | 2.028 (2) | N16—C17 | 1.125 (4) |
Pd2—N9ii | 2.028 (2) | C17—C18 | 1.452 (5) |
N9—C9 | 1.343 (3) | C18—H18a | 0.9800 |
N9—C12 | 1.345 (3) | C18—H18b | 0.9800 |
C9—C10 | 1.372 (4) | C18—H18c | 0.9800 |
N5i—PD1—N5 | 99.59 (11) | N9—C9—H9 | 119.6 |
N5i—PD1—N1 | 165.94 (8) | C10—C9—H9 | 119.6 |
N5—PD1—N1 | 79.78 (8) | C9—C10—C11 | 117.6 (3) |
N5i—PD1—N1i | 79.78 (8) | C9—C10—H10 | 121.2 |
N5—PD1—N1i | 165.94 (8) | C11—C10—H10 | 121.2 |
N1—PD1—N1i | 104.24 (11) | N11—C11—C10 | 122.4 (3) |
C1—N1—C4 | 117.0 (2) | N11—C11—H11 | 118.8 |
C1—N1—PD1 | 127.87 (17) | C10—C11—H11 | 118.8 |
C4—N1—PD1 | 114.69 (16) | C12—N11—C11 | 116.4 (2) |
N1—C1—C2 | 120.9 (2) | N11—C12—N9 | 125.4 (2) |
N1—C1—H1 | 119.6 | N11—C12—C12ii | 119.74 (16) |
C2—C1—H1 | 119.6 | N9—C12—C12ii | 114.78 (14) |
C3—C2—C1 | 117.5 (3) | C13—N12—C16 | 117.6 (2) |
C3—C2—H2 | 121.2 | C13—N12—PD2 | 126.33 (17) |
C1—C2—H2 | 121.2 | C16—N12—PD2 | 114.94 (17) |
N3—C3—C2 | 122.5 (3) | N12—C13—C14 | 120.7 (2) |
N3—C3—H3 | 118.7 | N12—C13—H13 | 119.6 |
C2—C3—H3 | 118.7 | C14—C13—H13 | 119.6 |
C4—N3—C3 | 116.1 (2) | C15—C14—C13 | 117.5 (3) |
N3—C4—N1 | 125.8 (2) | C15—C14—H14 | 121.2 |
N3—C4—C5 | 119.2 (2) | C13—C14—H14 | 121.2 |
N1—C4—C5 | 115.0 (2) | N15—C15—C14 | 122.5 (2) |
N8—C5—N5 | 125.5 (2) | N15—C15—H15 | 118.8 |
N8—C5—C4 | 120.0 (2) | C14—C15—H15 | 118.8 |
N5—C5—C4 | 114.4 (2) | C16—N15—C15 | 116.3 (2) |
C6—N5—C5 | 117.2 (2) | N15—C16—N12 | 125.1 (2) |
C6—N5—PD1 | 126.12 (18) | N15—C16—C16ii | 120.10 (15) |
C5—N5—PD1 | 115.98 (16) | N12—C16—C16ii | 114.78 (14) |
N5—C6—C7 | 120.6 (3) | F4—B1—F2 | 109.5 (3) |
N5—C6—H6 | 119.7 | F4—B1—F1 | 111.5 (3) |
C7—C6—H6 | 119.7 | F2—B1—F1 | 110.3 (3) |
C8—C7—C6 | 117.6 (3) | F4—B1—F3 | 109.5 (3) |
C8—C7—H7 | 121.2 | F2—B1—F3 | 109.1 (3) |
C6—C7—H7 | 121.2 | F1—B1—F3 | 106.9 (3) |
N8—C8—C7 | 122.4 (2) | F7—B2—F8 | 110.8 (3) |
N8—C8—H8 | 118.8 | F7—B2—F5 | 108.5 (3) |
C7—C8—H8 | 118.8 | F8—B2—F5 | 108.8 (3) |
C5—N8—C8 | 116.3 (2) | F7—B2—F6 | 109.2 (3) |
N12—PD2—N12ii | 80.22 (12) | F8—B2—F6 | 109.0 (3) |
N12—PD2—N9 | 102.08 (8) | F5—B2—F6 | 110.6 (3) |
N12ii—PD2—N9 | 163.44 (9) | N16—C17—C18 | 179.7 (4) |
N12—PD2—N9ii | 163.44 (9) | C17—C18—H18A | 109.5 |
N12ii—PD2—N9ii | 102.08 (8) | C17—C18—H18B | 109.5 |
N9—PD2—N9ii | 80.47 (12) | H18A—C18—H18B | 109.5 |
C9—N9—C12 | 117.3 (2) | C17—C18—H18C | 109.5 |
C9—N9—PD2 | 126.46 (18) | H18A—C18—H18C | 109.5 |
C12—N9—PD2 | 114.67 (17) | H18B—C18—H18C | 109.5 |
N9—C9—C10 | 120.7 (3) |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···N11iii | 0.95 | 2.62 | 3.460 (4) | 148 |
C6—H6···N15iv | 0.95 | 2.45 | 3.237 (4) | 140 |
C14—H14···N16v | 0.95 | 2.40 | 3.228 (4) | 146 |
C2—H2···F7v | 0.95 | 2.38 | 3.282 (3) | 159 |
C3—H3···F2vi | 0.95 | 2.44 | 3.240 (3) | 142 |
C8—H8···F3vii | 0.95 | 2.45 | 3.270 (4) | 145 |
C13—H13···F6ii | 0.95 | 2.37 | 2.982 (3) | 122 |
C15—H15···F8vi | 0.95 | 2.52 | 3.408 (4) | 155 |
C18—H18B···F5viii | 0.98 | 2.55 | 3.373 (5) | 142 |
Symmetry codes: (ii) −x, y, −z+1/2; (iii) x+1/2, y+1/2, z; (iv) −x+1/2, y−1/2, −z+1/2; (v) −x+1/2, y+1/2, −z+1/2; (vi) x, −y+1, z−1/2; (vii) −x+1/2, −y+1/2, −z; (viii) −x+1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Pd(C8H6N4)2](BF4)2·C2H3N |
Mr | 637.41 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 200 |
a, b, c (Å) | 18.0686 (4), 18.1126 (4), 14.8351 (3) |
β (°) | 108.613 (1) |
V (Å3) | 4601.13 (17) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 7.38 |
Crystal size (mm) | 0.20 × 0.11 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART 6000 diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.311, 0.478 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 31076, 4246, 4006 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.605 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.081, 1.03 |
No. of reflections | 4246 |
No. of parameters | 347 |
H-atom treatment | H-atom parameters constrained |
w = 1/[σ2(Fo2) + (0.0458P)2 + 11.6117P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 1.07, −0.75 |
Computer programs: SMART (Bruker, 2003), SAINT (Bruker, 2003), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and Materials Studio (Accelrys, 2002), UdMX (Maris, 2004) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···N11i | 0.95 | 2.62 | 3.460 (4) | 147.6 |
C6—H6···N15ii | 0.95 | 2.45 | 3.237 (4) | 139.7 |
C14—H14···N16iii | 0.95 | 2.40 | 3.228 (4) | 145.5 |
C2—H2···F7iii | 0.95 | 2.38 | 3.282 (3) | 159.2 |
C3—H3···F2iv | 0.95 | 2.44 | 3.240 (3) | 142.3 |
C8—H8···F3v | 0.95 | 2.45 | 3.270 (4) | 145 |
C13—H13···F6vi | 0.95 | 2.37 | 2.982 (3) | 121.9 |
C15—H15···F8iv | 0.95 | 2.52 | 3.408 (4) | 154.8 |
C18—H18B···F5vii | 0.98 | 2.55 | 3.373 (5) | 141.8 |
Symmetry codes: (i) x+1/2, y+1/2, z; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+1/2, y+1/2, −z+1/2; (iv) x, −y+1, z−1/2; (v) −x+1/2, −y+1/2, −z; (vi) −x, y, −z+1/2; (vii) −x+1/2, −y+1/2, −z+1. |
The title compound was obtained and characterized in the course of a study of complexes of Pd(II) with chelating heterocyclic ligands (Duong et al., 2011). In the crystal structure, each PdII center is coordinated by two 2,2'-bipyrimidine (bpm) ligands to form two different distorted square-planar complexes (Figure 1). Distortions in such complexes arise because a normal square-planar geometry, which is inherently preferred by d8 metals, is opposed by steric interactions of the two ligands. As a result, related complexes of 2,2'-bipyridine (bpy) typically adopt one of two characteristic conformations: a so-called twisted geometry (involving a tetrahedral distortion of the metal center) and a bow-step deformation of the ligands themselves, as described by Constable (1989) and Milani et al. (1997). In the title compound, each of the two observed complexes incorporates approximately planar bpm ligands (maximum r. m. s. deviation 0.089 Å), and the geometry of coordination is twisted, with angles α of 21.52 (16)° and 25.80 (18)° between the N—Pd—N planes of the ligands. These values of α are similar to those found in analogous dicationic PdII(bpy)2 complexes with twisted geometries, as reported by Chieh (1972), Geremia et al. (1992), Hinamoto et al. (1972), Milani et al. (1997), Stoccoro et al. (2002), and Wehman et al. (1994). In addition, the average Pd—N distance is normal [2.030 (2) Å] (McKenzie, 1971).
The structure consists of chains of PdII(bpm)2 dications linked along the b-axis by C—H···N hydrogen bonds involving uncoordinated atoms of nitrogen (mean C—H···N distance: 3.348 (4) Å; Table 1), as shown in Figure 2. Within each chain, adjacent dications are arranged in an approximately orthogonal way (the dihedral angle between the N4 coordination cores is 89.01 (6)°). The tetrafluoroborate counterions are located between the chains and bridge them via weak C—H···F contacts to create the three-dimensional packing. Included molecules of MeCN are located close to the PdII centers, fill remaining volume, and engage in additional C—H···N interactions (Figure 3).