The reaction of cobalt(II) nitrate with 5-amino-2,4,6-triiodoisophthalic acid (ATPA) in pyridine solution leads to the formation of the title compound, {[Co(C
8H
2I
3NO
4)(C
5H
5N)
3(H
2O)]·C
5H
5N}
n. The Co
2+ ion is six-coordinated by three N atoms, one water O atom and two O atoms from two ATPA ligands to form a distorted octahedral geometry. The two carboxylate groups of ATPA act as bridging ligands connecting the Co
II metal centers to form one-dimensional zigzag chains along the
c axis, with Co—O distances in the range 2.104 (4)–2.135 (4) Å. The average Co—N distance is 2.171 Å. A classical O—H
N hydrogen bond is formed by the coordinating water molecule and the pyridine solvent molecule. The structure was refined from a racemically twinned crystal with a twin ratio of approximately 8:1.
Supporting information
CCDC reference: 709509
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.010 Å
- R factor = 0.041
- wR factor = 0.065
- Data-to-parameter ratio = 15.9
checkCIF/PLATON results
No syntax errors found
Alert level C
Value of measurement temperature given = 296.000
Value of melting point given = 0.000
PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.44 Ratio
PLAT342_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 10
Alert level G
CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected.
CELLZ01_ALERT_1_G ALERT: Large difference may be due to a
symmetry error - see SYMMG tests
From the CIF: _cell_formula_units_Z 4
From the CIF: _chemical_formula_sum C28 H24 Co I3 N5 O5
TEST: Compare cell contents of formula and atom_site data
atom Z*formula cif sites diff
C 112.00 112.00 0.00
H 96.00 96.00 0.00
Co 0.00 4.00 -4.00
I 12.00 12.00 0.00
N 20.00 20.00 0.00
O 20.00 20.00 0.00
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 26.00
From the CIF: _reflns_number_total 6038
Count of symmetry unique reflns 3523
Completeness (_total/calc) 171.39%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 2515
Fraction of Friedel pairs measured 0.714
Are heavy atom types Z>Si present yes
PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 3
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
4 ALERT level G = General alerts; check
2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
0.29 g (1 mmol) Co(NO3)2.6H2O was dissolved in 10 ml ethanol, 0.54 g (1 mmol) 5-amino-2, 4, 6-triiodoisophthalic acid was dissolved in 10 ml pyridine.
To mix two solutions gave a pale purple solution which was stirred at room
temperature for 2 h, then filtered. After several days well formed light
purple single crystals were obtained.
H atoms were positioned geometrically and refined using a riding model with
C—H distances = 0.93 Å, N—H distances = 0.86 Å, and O—H distances =
0.85 Å with Uiso(H) = 1.2 times Ueq(C, N, O).
Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003).
catena-Poly[[[aquatripyridinecobalt(II)]-µ-5-amino-2,4,6-
triiodoisophthalato-
κ2O
1:O
3] pyridine solvate]
top
Crystal data top
[Co(C8H2I3NO4)(C5H5N)3(H2O)]·C5H5N | F(000) = 1812 |
Mr = 950.15 | Dx = 1.974 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 7120 reflections |
a = 9.7759 (2) Å | θ = 4.7–43.0° |
b = 16.9083 (4) Å | µ = 3.48 mm−1 |
c = 19.3380 (4) Å | T = 296 K |
V = 3196.45 (12) Å3 | Sheet, light purple |
Z = 4 | 0.30 × 0.25 × 0.08 mm |
Data collection top
Bruker APEXII CCD diffractometer | 6038 independent reflections |
Radiation source: fine-focus sealed tube | 4577 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 26.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −12→9 |
Tmin = 0.38, Tmax = 0.75 | k = −13→20 |
16692 measured reflections | l = −15→23 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.065 | w = 1/[σ2(Fo2) + (0.0243P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
6038 reflections | Δρmax = 0.68 e Å−3 |
379 parameters | Δρmin = −0.67 e Å−3 |
3 restraints | Absolute structure: Flack (1983), with 2515 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.13 (2) |
Crystal data top
[Co(C8H2I3NO4)(C5H5N)3(H2O)]·C5H5N | V = 3196.45 (12) Å3 |
Mr = 950.15 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 9.7759 (2) Å | µ = 3.48 mm−1 |
b = 16.9083 (4) Å | T = 296 K |
c = 19.3380 (4) Å | 0.30 × 0.25 × 0.08 mm |
Data collection top
Bruker APEXII CCD diffractometer | 6038 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 4577 reflections with I > 2σ(I) |
Tmin = 0.38, Tmax = 0.75 | Rint = 0.027 |
16692 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.065 | Δρmax = 0.68 e Å−3 |
S = 1.04 | Δρmin = −0.67 e Å−3 |
6038 reflections | Absolute structure: Flack (1983), with 2515 Friedel pairs |
379 parameters | Absolute structure parameter: 0.13 (2) |
3 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.8251 (6) | 0.2139 (3) | 0.8550 (3) | 0.0319 (15) | |
C2 | 0.8423 (6) | 0.2494 (3) | 0.7900 (3) | 0.0344 (16) | |
C3 | 0.7752 (6) | 0.2152 (3) | 0.7335 (3) | 0.0299 (15) | |
C4 | 0.6949 (6) | 0.1483 (3) | 0.7390 (3) | 0.0229 (14) | |
C5 | 0.6819 (6) | 0.1159 (3) | 0.8047 (3) | 0.0286 (15) | |
C6 | 0.7445 (6) | 0.1478 (3) | 0.8629 (3) | 0.0243 (14) | |
C7 | 0.6216 (7) | 0.1144 (3) | 0.6765 (3) | 0.0276 (15) | |
C8 | 0.7222 (7) | 0.1122 (3) | 0.9341 (3) | 0.0305 (15) | |
C9 | 0.9902 (7) | 0.0943 (4) | 1.1534 (4) | 0.052 (2) | |
H9 | 1.0468 | 0.0501 | 1.1540 | 0.063* | |
C10 | 1.0171 (8) | 0.1565 (5) | 1.1968 (4) | 0.067 (2) | |
H10 | 1.0909 | 0.1528 | 1.2270 | 0.080* | |
C11 | 0.9406 (10) | 0.2230 (5) | 1.1973 (4) | 0.078 (3) | |
H11 | 0.9607 | 0.2651 | 1.2266 | 0.093* | |
C12 | 0.8332 (9) | 0.2254 (5) | 1.1531 (4) | 0.078 (3) | |
H12 | 0.7768 | 0.2697 | 1.1520 | 0.093* | |
C13 | 0.8073 (7) | 0.1626 (4) | 1.1100 (4) | 0.060 (2) | |
H13 | 0.7342 | 0.1661 | 1.0793 | 0.072* | |
C14 | 1.1101 (6) | −0.0851 (4) | 1.0269 (3) | 0.0397 (18) | |
H14 | 1.0619 | −0.1279 | 1.0447 | 0.048* | |
C15 | 1.2437 (7) | −0.0963 (4) | 1.0090 (3) | 0.0488 (19) | |
H15 | 1.2859 | −0.1451 | 1.0151 | 0.059* | |
C16 | 1.3142 (7) | −0.0329 (5) | 0.9817 (3) | 0.053 (2) | |
H16 | 1.4044 | −0.0391 | 0.9674 | 0.064* | |
C17 | 1.2528 (6) | 0.0377 (4) | 0.9759 (3) | 0.0471 (19) | |
H17 | 1.3000 | 0.0815 | 0.9592 | 0.057* | |
C18 | 1.1168 (7) | 0.0434 (4) | 0.9955 (3) | 0.0448 (18) | |
H18 | 1.0733 | 0.0921 | 0.9911 | 0.054* | |
C19 | 0.6591 (7) | −0.1424 (4) | 0.9923 (4) | 0.0470 (19) | |
H19 | 0.6114 | −0.1305 | 1.0326 | 0.056* | |
C20 | 0.6061 (7) | −0.1985 (4) | 0.9494 (4) | 0.057 (2) | |
H20 | 0.5249 | −0.2240 | 0.9608 | 0.068* | |
C21 | 0.6717 (9) | −0.2166 (4) | 0.8905 (4) | 0.069 (2) | |
H21 | 0.6357 | −0.2536 | 0.8599 | 0.082* | |
C22 | 0.7916 (9) | −0.1797 (4) | 0.8766 (4) | 0.063 (2) | |
H22 | 0.8416 | −0.1925 | 0.8372 | 0.076* | |
C23 | 0.8384 (7) | −0.1222 (4) | 0.9223 (4) | 0.052 (2) | |
H23 | 0.9188 | −0.0956 | 0.9113 | 0.062* | |
C24 | −0.0436 (7) | 0.0013 (4) | 0.7430 (5) | 0.062 (2) | |
H24 | −0.1309 | −0.0202 | 0.7465 | 0.074* | |
C25 | 0.0132 (9) | 0.0325 (5) | 0.8004 (4) | 0.064 (2) | |
H25 | −0.0337 | 0.0321 | 0.8422 | 0.076* | |
C26 | 0.1384 (11) | 0.0640 (5) | 0.7959 (5) | 0.096 (3) | |
H26 | 0.1804 | 0.0855 | 0.8348 | 0.115* | |
C27 | 0.2020 (9) | 0.0641 (6) | 0.7351 (5) | 0.101 (3) | |
H27 | 0.2884 | 0.0867 | 0.7309 | 0.121* | |
C28 | 0.1404 (9) | 0.0313 (5) | 0.6790 (4) | 0.082 (3) | |
H28 | 0.1862 | 0.0311 | 0.6369 | 0.098* | |
Co1 | 0.83021 (7) | −0.00406 (5) | 1.04654 (4) | 0.0312 (2) | |
I1 | 0.92570 (5) | 0.26385 (3) | 0.94026 (2) | 0.05269 (14) | |
I2 | 0.78262 (5) | 0.27575 (3) | 0.63848 (2) | 0.05874 (16) | |
I3 | 0.56454 (5) | 0.01146 (3) | 0.81795 (2) | 0.05039 (14) | |
N1 | 0.9245 (6) | 0.3143 (3) | 0.7821 (3) | 0.0630 (17) | |
H1A | 0.9357 | 0.3349 | 0.7418 | 0.076* | |
H1B | 0.9649 | 0.3345 | 0.8174 | 0.076* | |
N2 | 0.8833 (5) | 0.0964 (3) | 1.1102 (2) | 0.0393 (14) | |
N3 | 1.0452 (5) | −0.0175 (3) | 1.0205 (2) | 0.0348 (13) | |
N4 | 0.7763 (6) | −0.1033 (3) | 0.9799 (3) | 0.0379 (14) | |
N5 | 0.0172 (7) | −0.0004 (4) | 0.6829 (3) | 0.0660 (19) | |
O1 | 0.6899 (4) | 0.0730 (2) | 0.6366 (2) | 0.0386 (11) | |
O2 | 0.5004 (5) | 0.1311 (3) | 0.6709 (2) | 0.0555 (14) | |
O3 | 0.8147 (4) | 0.0677 (2) | 0.95601 (19) | 0.0329 (10) | |
O4 | 0.6139 (4) | 0.1298 (2) | 0.9646 (2) | 0.0460 (12) | |
O5 | 0.6191 (3) | 0.0161 (2) | 1.05937 (18) | 0.0423 (11) | |
H5B | 0.5951 | 0.0603 | 1.0423 | 0.051* | |
H5A | 0.5963 | 0.0143 | 1.1018 | 0.051* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.041 (4) | 0.029 (4) | 0.026 (4) | 0.003 (3) | −0.003 (3) | −0.007 (3) |
C2 | 0.043 (4) | 0.029 (4) | 0.032 (4) | −0.014 (3) | 0.003 (3) | −0.004 (3) |
C3 | 0.038 (3) | 0.029 (4) | 0.023 (3) | −0.005 (3) | −0.004 (3) | 0.001 (3) |
C4 | 0.026 (4) | 0.022 (3) | 0.020 (3) | 0.004 (3) | −0.001 (3) | −0.007 (3) |
C5 | 0.032 (3) | 0.032 (4) | 0.022 (4) | −0.002 (3) | 0.003 (3) | −0.003 (3) |
C6 | 0.033 (4) | 0.022 (3) | 0.017 (3) | 0.006 (3) | −0.004 (3) | −0.002 (3) |
C7 | 0.041 (4) | 0.020 (4) | 0.021 (4) | 0.010 (3) | 0.005 (3) | 0.004 (3) |
C8 | 0.045 (4) | 0.027 (4) | 0.019 (4) | −0.006 (3) | −0.005 (4) | −0.007 (3) |
C9 | 0.050 (4) | 0.053 (5) | 0.053 (5) | −0.004 (4) | −0.023 (4) | 0.006 (4) |
C10 | 0.078 (6) | 0.071 (6) | 0.052 (5) | −0.045 (5) | −0.022 (5) | −0.004 (5) |
C11 | 0.122 (8) | 0.054 (6) | 0.058 (5) | −0.033 (6) | 0.009 (6) | −0.022 (5) |
C12 | 0.103 (7) | 0.056 (6) | 0.075 (6) | 0.004 (5) | −0.025 (5) | −0.024 (5) |
C13 | 0.067 (5) | 0.054 (5) | 0.059 (5) | 0.011 (5) | −0.006 (5) | −0.020 (4) |
C14 | 0.042 (4) | 0.043 (4) | 0.035 (4) | 0.004 (4) | 0.001 (3) | 0.000 (4) |
C15 | 0.046 (5) | 0.057 (5) | 0.043 (5) | 0.020 (4) | 0.002 (4) | −0.008 (4) |
C16 | 0.028 (4) | 0.088 (6) | 0.044 (5) | 0.013 (4) | 0.003 (3) | −0.009 (4) |
C17 | 0.032 (4) | 0.064 (6) | 0.045 (4) | −0.008 (4) | −0.001 (3) | 0.010 (4) |
C18 | 0.046 (5) | 0.041 (4) | 0.048 (5) | 0.001 (4) | 0.003 (4) | 0.004 (4) |
C19 | 0.048 (5) | 0.037 (4) | 0.056 (5) | 0.005 (4) | 0.003 (4) | 0.004 (4) |
C20 | 0.047 (5) | 0.043 (5) | 0.080 (6) | −0.017 (4) | −0.010 (4) | 0.001 (5) |
C21 | 0.088 (7) | 0.050 (5) | 0.068 (5) | −0.009 (5) | −0.026 (5) | −0.008 (5) |
C22 | 0.085 (6) | 0.060 (6) | 0.046 (5) | 0.000 (5) | −0.004 (5) | −0.028 (4) |
C23 | 0.055 (5) | 0.051 (5) | 0.049 (5) | −0.011 (4) | 0.006 (4) | −0.005 (4) |
C24 | 0.041 (5) | 0.061 (5) | 0.083 (6) | 0.005 (4) | 0.005 (5) | −0.002 (6) |
C25 | 0.078 (6) | 0.067 (6) | 0.046 (5) | 0.019 (5) | 0.010 (5) | 0.001 (5) |
C26 | 0.115 (9) | 0.122 (8) | 0.050 (6) | −0.044 (7) | −0.034 (6) | 0.010 (6) |
C27 | 0.059 (6) | 0.167 (10) | 0.078 (7) | −0.047 (6) | −0.011 (6) | 0.020 (8) |
C28 | 0.063 (6) | 0.131 (9) | 0.051 (6) | −0.003 (6) | 0.014 (5) | 0.023 (6) |
Co1 | 0.0333 (4) | 0.0350 (5) | 0.0254 (5) | −0.0001 (4) | −0.0013 (4) | 0.0022 (5) |
I1 | 0.0737 (3) | 0.0481 (3) | 0.0363 (3) | −0.0171 (3) | −0.0127 (3) | −0.0058 (2) |
I2 | 0.0883 (4) | 0.0569 (3) | 0.0311 (3) | −0.0191 (3) | 0.0001 (3) | 0.0134 (3) |
I3 | 0.0633 (3) | 0.0495 (3) | 0.0384 (3) | −0.0231 (3) | −0.0053 (2) | 0.0067 (2) |
N1 | 0.092 (4) | 0.062 (4) | 0.035 (3) | −0.045 (4) | −0.014 (4) | 0.007 (3) |
N2 | 0.048 (4) | 0.042 (4) | 0.027 (3) | −0.004 (3) | 0.000 (3) | −0.001 (3) |
N3 | 0.031 (3) | 0.038 (3) | 0.035 (3) | 0.002 (3) | 0.003 (2) | 0.006 (3) |
N4 | 0.043 (3) | 0.039 (4) | 0.031 (3) | 0.003 (3) | 0.002 (3) | −0.002 (3) |
N5 | 0.063 (4) | 0.089 (5) | 0.047 (4) | 0.014 (4) | −0.012 (4) | −0.011 (4) |
O1 | 0.047 (3) | 0.041 (3) | 0.028 (2) | −0.001 (2) | 0.002 (2) | −0.013 (2) |
O2 | 0.048 (3) | 0.075 (4) | 0.044 (3) | 0.015 (3) | −0.012 (3) | −0.020 (3) |
O3 | 0.037 (3) | 0.036 (3) | 0.026 (2) | 0.001 (2) | −0.005 (2) | 0.007 (2) |
O4 | 0.049 (3) | 0.064 (3) | 0.025 (3) | 0.021 (2) | 0.010 (2) | 0.001 (2) |
O5 | 0.045 (3) | 0.048 (3) | 0.034 (2) | 0.007 (2) | 0.006 (2) | 0.010 (2) |
Geometric parameters (Å, º) top
C1—C6 | 1.376 (7) | C18—N3 | 1.336 (7) |
C1—C2 | 1.404 (7) | C18—H18 | 0.9300 |
C1—I1 | 2.097 (6) | C19—N4 | 1.344 (7) |
C2—N1 | 1.368 (7) | C19—C20 | 1.363 (9) |
C2—C3 | 1.400 (7) | C19—H19 | 0.9300 |
C3—C4 | 1.381 (7) | C20—C21 | 1.342 (9) |
C3—I2 | 2.105 (5) | C20—H20 | 0.9300 |
C4—C5 | 1.389 (7) | C21—C22 | 1.355 (9) |
C4—C7 | 1.517 (8) | C21—H21 | 0.9300 |
C5—C6 | 1.390 (7) | C22—C23 | 1.391 (8) |
C5—I3 | 2.122 (6) | C22—H22 | 0.9300 |
C6—C8 | 1.519 (4) | C23—N4 | 1.309 (7) |
C7—O2 | 1.223 (6) | C23—H23 | 0.9300 |
C7—O1 | 1.238 (6) | C24—N5 | 1.306 (8) |
C8—O4 | 1.248 (6) | C24—C25 | 1.348 (9) |
C8—O3 | 1.250 (6) | C24—H24 | 0.9300 |
C9—N2 | 1.337 (7) | C25—C26 | 1.338 (10) |
C9—C10 | 1.372 (9) | C25—H25 | 0.9300 |
C9—H9 | 0.9300 | C26—C27 | 1.331 (11) |
C10—C11 | 1.350 (10) | C26—H26 | 0.9300 |
C10—H10 | 0.9300 | C27—C28 | 1.359 (11) |
C11—C12 | 1.355 (10) | C27—H27 | 0.9300 |
C11—H11 | 0.9300 | C28—N5 | 1.321 (9) |
C12—C13 | 1.373 (9) | C28—H28 | 0.9300 |
C12—H12 | 0.9300 | Co1—O1i | 2.104 (4) |
C13—N2 | 1.345 (7) | Co1—O5 | 2.106 (3) |
C13—H13 | 0.9300 | Co1—O3 | 2.135 (4) |
C14—N3 | 1.312 (7) | Co1—N2 | 2.161 (5) |
C14—C15 | 1.365 (8) | Co1—N3 | 2.173 (5) |
C14—H14 | 0.9300 | Co1—N4 | 2.180 (5) |
C15—C16 | 1.379 (9) | N1—H1A | 0.8600 |
C15—H15 | 0.9300 | N1—H1B | 0.8600 |
C16—C17 | 1.342 (8) | O1—Co1ii | 2.104 (4) |
C16—H16 | 0.9300 | O5—H5B | 0.8500 |
C17—C18 | 1.386 (8) | O5—H5A | 0.8499 |
C17—H17 | 0.9300 | | |
| | | |
C6—C1—C2 | 121.0 (5) | C19—C20—H20 | 120.2 |
C6—C1—I1 | 120.6 (4) | C20—C21—C22 | 118.4 (8) |
C2—C1—I1 | 118.4 (4) | C20—C21—H21 | 120.8 |
N1—C2—C3 | 121.3 (5) | C22—C21—H21 | 120.8 |
N1—C2—C1 | 120.9 (5) | C21—C22—C23 | 118.7 (8) |
C3—C2—C1 | 117.8 (5) | C21—C22—H22 | 120.6 |
C4—C3—C2 | 123.0 (5) | C23—C22—H22 | 120.6 |
C4—C3—I2 | 119.1 (4) | N4—C23—C22 | 124.0 (7) |
C2—C3—I2 | 117.7 (4) | N4—C23—H23 | 118.0 |
C3—C4—C5 | 116.5 (5) | C22—C23—H23 | 118.0 |
C3—C4—C7 | 121.1 (5) | N5—C24—C25 | 123.6 (7) |
C5—C4—C7 | 122.5 (5) | N5—C24—H24 | 118.2 |
C4—C5—C6 | 123.2 (5) | C25—C24—H24 | 118.2 |
C4—C5—I3 | 119.2 (4) | C26—C25—C24 | 118.6 (8) |
C6—C5—I3 | 117.6 (4) | C26—C25—H25 | 120.7 |
C1—C6—C5 | 118.5 (5) | C24—C25—H25 | 120.7 |
C1—C6—C8 | 120.3 (5) | C27—C26—C25 | 119.0 (9) |
C5—C6—C8 | 121.1 (5) | C27—C26—H26 | 120.5 |
O2—C7—O1 | 126.7 (7) | C25—C26—H26 | 120.5 |
O2—C7—C4 | 116.2 (6) | C26—C27—C28 | 119.9 (8) |
O1—C7—C4 | 117.2 (5) | C26—C27—H27 | 120.1 |
O4—C8—O3 | 126.7 (5) | C28—C27—H27 | 120.1 |
O4—C8—C6 | 117.0 (6) | N5—C28—C27 | 121.6 (8) |
O3—C8—C6 | 116.2 (5) | N5—C28—H28 | 119.2 |
N2—C9—C10 | 120.7 (7) | C27—C28—H28 | 119.2 |
N2—C9—H9 | 119.6 | O1i—Co1—O5 | 84.29 (15) |
C10—C9—H9 | 119.6 | O1i—Co1—O3 | 170.52 (16) |
C11—C10—C9 | 122.5 (8) | O5—Co1—O3 | 86.29 (15) |
C11—C10—H10 | 118.7 | O1i—Co1—N2 | 89.21 (16) |
C9—C10—H10 | 118.7 | O5—Co1—N2 | 92.37 (17) |
C10—C11—C12 | 116.7 (8) | O3—Co1—N2 | 92.18 (17) |
C10—C11—H11 | 121.7 | O1i—Co1—N3 | 102.93 (17) |
C12—C11—H11 | 121.7 | O5—Co1—N3 | 172.68 (17) |
C11—C12—C13 | 120.2 (8) | O3—Co1—N3 | 86.47 (17) |
C11—C12—H12 | 119.9 | N2—Co1—N3 | 88.95 (19) |
C13—C12—H12 | 119.9 | O1i—Co1—N4 | 92.29 (17) |
N2—C13—C12 | 122.7 (7) | O5—Co1—N4 | 87.53 (18) |
N2—C13—H13 | 118.7 | O3—Co1—N4 | 86.31 (16) |
C12—C13—H13 | 118.7 | N2—Co1—N4 | 178.48 (19) |
N3—C14—C15 | 124.1 (6) | N3—Co1—N4 | 91.0 (2) |
N3—C14—H14 | 118.0 | C2—N1—H1A | 120.0 |
C15—C14—H14 | 118.0 | C2—N1—H1B | 120.0 |
C14—C15—C16 | 117.8 (7) | H1A—N1—H1B | 120.0 |
C14—C15—H15 | 121.1 | C9—N2—C13 | 117.2 (6) |
C16—C15—H15 | 121.1 | C9—N2—Co1 | 121.5 (5) |
C17—C16—C15 | 120.0 (6) | C13—N2—Co1 | 121.3 (5) |
C17—C16—H16 | 120.0 | C14—N3—C18 | 116.9 (5) |
C15—C16—H16 | 120.0 | C14—N3—Co1 | 122.5 (4) |
C16—C17—C18 | 117.9 (7) | C18—N3—Co1 | 120.7 (4) |
C16—C17—H17 | 121.0 | C23—N4—C19 | 115.3 (6) |
C18—C17—H17 | 121.0 | C23—N4—Co1 | 125.4 (5) |
N3—C18—C17 | 123.2 (6) | C19—N4—Co1 | 118.7 (5) |
N3—C18—H18 | 118.4 | C24—N5—C28 | 117.2 (7) |
C17—C18—H18 | 118.4 | C7—O1—Co1ii | 141.2 (4) |
N4—C19—C20 | 123.9 (7) | C8—O3—Co1 | 132.1 (4) |
N4—C19—H19 | 118.0 | Co1—O5—H5B | 111.5 |
C20—C19—H19 | 118.0 | Co1—O5—H5A | 111.4 |
C21—C20—C19 | 119.6 (7) | H5B—O5—H5A | 109.4 |
C21—C20—H20 | 120.2 | | |
Symmetry codes: (i) −x+3/2, −y, z+1/2; (ii) −x+3/2, −y, z−1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···N5iii | 0.85 | 1.94 | 2.748 (7) | 159 |
Symmetry code: (iii) −x+1/2, −y, z+1/2. |
Experimental details
Crystal data |
Chemical formula | [Co(C8H2I3NO4)(C5H5N)3(H2O)]·C5H5N |
Mr | 950.15 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 296 |
a, b, c (Å) | 9.7759 (2), 16.9083 (4), 19.3380 (4) |
V (Å3) | 3196.45 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.48 |
Crystal size (mm) | 0.30 × 0.25 × 0.08 |
|
Data collection |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.38, 0.75 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16692, 6038, 4577 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.617 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.065, 1.04 |
No. of reflections | 6038 |
No. of parameters | 379 |
No. of restraints | 3 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.68, −0.67 |
Absolute structure | Flack (1983), with 2515 Friedel pairs |
Absolute structure parameter | 0.13 (2) |
Selected geometric parameters (Å, º) topCo1—O1i | 2.104 (4) | Co1—N2 | 2.161 (5) |
Co1—O5 | 2.106 (3) | Co1—N3 | 2.173 (5) |
Co1—O3 | 2.135 (4) | Co1—N4 | 2.180 (5) |
| | | |
O1i—Co1—O3 | 170.52 (16) | O5—Co1—N3 | 172.68 (17) |
O1i—Co1—N3 | 102.93 (17) | N2—Co1—N4 | 178.48 (19) |
Symmetry code: (i) −x+3/2, −y, z+1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···N5ii | 0.85 | 1.94 | 2.748 (7) | 159 |
Symmetry code: (ii) −x+1/2, −y, z+1/2. |
The crystal structure of ATPA (Beck & Sheldrick, 2008) is the precursor of the synthesis of a wide range of contrast agents with different amide-bound aliphatic side chains, which modulate their physical and physiological properties (Ziegler et al. 1997). However, to the best of our knowledge, there is no information about the structural characterization of its transition metal complexes.
The molecular structure of the title complex comprises of polymeric chains which extend along the c-axis. In the chain, each Co atom shows a distorted octahedron environment with a [3N+3O] coordination: three nitrogen atoms originate from pyridines, one oxygen from a water molecule and two oxygen atoms from two ATPA ligands. The two CO2- groups of the ATPA ligand coordinate to Co2+, bridging the Co metal centers. The bond lengths of the distorted octahedron are presented in Table 1. The average Co—N bond distance of the three pyridine ligands is 2.171 Å. The Co—O bond lengths in the title complex are slightly longer than those in the reported coordination polymers of cobalt and 1,3,5-benzenetricarboxylate (2.055 (2) Å) (Livage et al., 2001). The bond angles shown in Table 1 demonstrate the distorted octahedron in the Co coordination center. Compared with the data of the free ligand ATPA (Beck & Sheldrick, 2008), the C—O bond lengths are lengthened, the C—I and C—N bond distances are almost unchanged and the O—C—O bond angles are slightly expanded when the carboxylate groups are coordinated to central cations. The Co—N(py) and Co—O(H2O) distances are in good agreement with those in diaqua-diformato-dipyridine-cobalt(II) (Zhu et al., 2004), where they are equal to 2.159 (4) Å and 2.143 (3) Å, respectively. A classic O—H···N hydrogen bond is formed by the coordinating water and the uncoordinated pyridine molecule (Table 2).