Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680803095X/sj2540sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680803095X/sj2540Isup2.hkl |
CCDC reference: 709372
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.009 Å
- R factor = 0.054
- wR factor = 0.124
- Data-to-parameter ratio = 20.8
checkCIF/PLATON results
No syntax errors found
Alert level A PLAT220_ALERT_2_A Large Non-Solvent C Ueq(max)/Ueq(min) ... 8.87 Ratio
Author Response: The -CH2CHCHCH3 groups show high thermal parameters but they were not refinable in terms of disordered substituents. |
PLAT222_ALERT_3_A Large Non-Solvent H Ueq(max)/Ueq(min) ... 9.61 Ratio
Author Response: The -CH2CHCHCH3 groups show high thermal parameters but they were not refinable in terms of disordered substituents. |
Alert level B PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for C4 PLAT362_ALERT_2_B Short C(sp3)-C(sp2) Bond C1 - C2 ... 1.27 Ang.
Alert level C SHFSU01_ALERT_2_C Test not performed. _refine_ls_shift/su_max and _refine_ls_shift/esd_max not present. Absolute value of the parameter shift to su ratio given 0.001 PLAT213_ALERT_2_C Atom C1 has ADP max/min Ratio ............. 3.10 prola PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 9 PLAT368_ALERT_2_C Short C(sp2)-C(sp2) Bond C2 - C3 ... 1.16 Ang. PLAT432_ALERT_2_C Short Inter X...Y Contact Br1 .. C21 .. 3.34 Ang. PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT154_ALERT_1_C The su's on the Cell Angles are Equal (x 10000) 800 Deg. PLAT380_ALERT_4_C Check Incorrectly? Oriented X(sp2)-Methyl Moiety C1 PLAT380_ALERT_4_C Check Incorrectly? Oriented X(sp2)-Methyl Moiety C25 PLAT720_ALERT_4_C Number of Unusual/Non-Standard Labels .......... 2
2 ALERT level A = In general: serious problem 2 ALERT level B = Potentially serious problem 10 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 7 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A mixture of 1,1'-propylenedibenzimidazole (0.9 g, 3.26 mmol) and (E)-1-bromobut-2-ene (1.2 g, 6.78 mmol) in dimethylformamide (5 ml) was heated under reflux for 3 h. The mixture was then cooled and the volatiles were removed in vacuo. The residue was crystallized from a DMF/EtOH (1:3) mixture [Yield: 1.39 g, 78%. Mp. 479–481°K].
Analysis, calculated for C25H32N4OBr2: C53.19, H 5.67, N 9.93%; found: C 53.95, H 5.42, N 10.11%. 1H-NMR (DMSO-d6): δ (p.p.m.) 8.24 (s, 2-CH, 2H), 2.64 (t, bridge, 2H), 4.83 (t, bridge, 4H), 1.86 (d, methyl, 6H), 5.14 (d, methylene, 4H), 5.77 (m, =CH, 4H), 7.70–8.05 (m, Ar—H, 8H). 13C-NMR (DMSO-d6): δ (p.p.m.) 13.28, 17.56, 28.28, 43.70, 48.44, 113.74, 122.22, 123.37, 126.50, 130.89, 131.52, 132.89, 142.18.
The H atoms of the water molecule were located from a difference Fourier map and refined freely. The C-bound H atoms were located geometrically, with C—H = 0.93 - 0.97 Å, and refined using a riding model, with Uiso(H) = 1.2Ueq(Caromatic and Cmethylene) or 1.5Ueq(Cmethyl). The C atoms of both –CH2(CH)2CH3 groups in (I) show very high thermal parameters but a suitable disorder model could not be found to separate discrete disorder components
Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA (Stoe & Cie, 2002); data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
C25H30N42+·2Br−·H2O | Z = 2 |
Mr = 564.35 | F(000) = 576 |
Triclinic, P1 | Dx = 1.420 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.7989 (9) Å | Cell parameters from 25470 reflections |
b = 11.1878 (13) Å | θ = 2.0–28.0° |
c = 14.8813 (14) Å | µ = 3.09 mm−1 |
α = 106.381 (8)° | T = 296 K |
β = 96.490 (8)° | Prismatic plate, light yellow |
γ = 106.227 (8)° | 0.53 × 0.45 × 0.31 mm |
V = 1319.9 (3) Å3 |
Stoe IPDSII diffractometer | 6181 independent reflections |
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 4101 reflections with I > 2σ(I) |
Plane graphite monochromator | Rint = 0.063 |
Detector resolution: 6.67 pixels mm-1 | θmax = 27.7°, θmin = 2.5° |
ω scans | h = −11→11 |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | k = −14→13 |
Tmin = 0.291, Tmax = 0.447 | l = −18→19 |
16109 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0416P)2 + 0.9807P] where P = (Fo2 + 2Fc2)/3 |
6181 reflections | (Δ/σ)max < 0.001 |
297 parameters | Δρmax = 0.57 e Å−3 |
0 restraints | Δρmin = −0.41 e Å−3 |
C25H30N42+·2Br−·H2O | γ = 106.227 (8)° |
Mr = 564.35 | V = 1319.9 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.7989 (9) Å | Mo Kα radiation |
b = 11.1878 (13) Å | µ = 3.09 mm−1 |
c = 14.8813 (14) Å | T = 296 K |
α = 106.381 (8)° | 0.53 × 0.45 × 0.31 mm |
β = 96.490 (8)° |
Stoe IPDSII diffractometer | 6181 independent reflections |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | 4101 reflections with I > 2σ(I) |
Tmin = 0.291, Tmax = 0.447 | Rint = 0.063 |
16109 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.57 e Å−3 |
6181 reflections | Δρmin = −0.41 e Å−3 |
297 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.7390 (4) | 0.6064 (4) | 0.4072 (2) | 0.0525 (10) | |
N2 | 0.4931 (4) | 0.5116 (3) | 0.3227 (2) | 0.0495 (10) | |
N3 | 0.1559 (4) | 0.3113 (3) | 0.0400 (2) | 0.0463 (10) | |
N4 | 0.2504 (4) | 0.1820 (4) | −0.0600 (2) | 0.0557 (11) | |
C1 | 1.1336 (19) | 0.851 (2) | 0.3031 (16) | 0.400 (19) | |
C2 | 1.0601 (14) | 0.774 (2) | 0.3445 (13) | 0.292 (12) | |
C3 | 0.9949 (10) | 0.7489 (12) | 0.4033 (10) | 0.177 (6) | |
C4 | 0.9166 (5) | 0.6413 (6) | 0.4322 (3) | 0.0707 (18) | |
C5 | 0.6392 (5) | 0.6485 (4) | 0.4651 (3) | 0.0485 (12) | |
C6 | 0.6724 (5) | 0.7321 (4) | 0.5592 (3) | 0.0572 (14) | |
C7 | 0.5407 (6) | 0.7523 (5) | 0.5946 (3) | 0.0661 (16) | |
C8 | 0.3830 (6) | 0.6909 (5) | 0.5413 (3) | 0.0673 (17) | |
C9 | 0.3504 (5) | 0.6076 (4) | 0.4486 (3) | 0.0559 (14) | |
C10 | 0.4821 (5) | 0.5886 (4) | 0.4116 (2) | 0.0451 (11) | |
C11 | 0.6481 (5) | 0.5246 (4) | 0.3234 (3) | 0.0546 (14) | |
C12 | 0.3576 (5) | 0.4279 (4) | 0.2430 (3) | 0.0524 (12) | |
C13 | 0.3047 (5) | 0.5057 (4) | 0.1841 (3) | 0.0536 (12) | |
C14 | 0.1475 (5) | 0.4283 (4) | 0.1120 (3) | 0.0547 (14) | |
C15 | 0.0246 (5) | 0.2004 (4) | −0.0130 (2) | 0.0462 (11) | |
C16 | −0.1379 (5) | 0.1681 (5) | −0.0101 (3) | 0.0607 (16) | |
C17 | −0.2356 (6) | 0.0474 (5) | −0.0719 (4) | 0.0730 (17) | |
C18 | −0.1753 (7) | −0.0361 (5) | −0.1343 (4) | 0.0756 (17) | |
C19 | −0.0147 (6) | −0.0054 (5) | −0.1380 (3) | 0.0692 (18) | |
C20 | 0.0849 (5) | 0.1169 (4) | −0.0768 (3) | 0.0528 (14) | |
C21 | 0.2866 (5) | 0.2959 (4) | 0.0079 (3) | 0.0520 (14) | |
C22 | 0.3684 (7) | 0.1338 (7) | −0.1103 (3) | 0.084 (2) | |
C23 | 0.3596 (8) | 0.1486 (7) | −0.2051 (4) | 0.094 (3) | |
C24 | 0.3622 (10) | 0.0582 (8) | −0.2808 (5) | 0.116 (3) | |
C25 | 0.3606 (14) | 0.0664 (10) | −0.3775 (6) | 0.162 (5) | |
O1 | 0.5845 (5) | 0.2069 (5) | 0.1612 (4) | 0.0878 (16) | |
Br1 | 0.70894 (5) | 0.46584 (5) | 0.08608 (3) | 0.0654 (2) | |
Br2 | −0.05435 (5) | 0.30445 (5) | 0.30568 (3) | 0.0648 (2) | |
H1A | 1.16160 | 0.80090 | 0.24750 | 0.5960* | |
H1B | 1.23030 | 0.91410 | 0.34640 | 0.5960* | |
H1C | 1.06430 | 0.89630 | 0.28420 | 0.5960* | |
H2 | 1.05770 | 0.69140 | 0.30580 | 0.3530* | |
H3 | 0.99330 | 0.82660 | 0.44670 | 0.2120* | |
H4A | 0.95090 | 0.66410 | 0.50090 | 0.0840* | |
H4B | 0.94770 | 0.56570 | 0.40120 | 0.0840* | |
H6 | 0.77720 | 0.77180 | 0.59580 | 0.0680* | |
H7 | 0.55760 | 0.80940 | 0.65670 | 0.0800* | |
H8 | 0.29780 | 0.70650 | 0.56900 | 0.0810* | |
H9 | 0.24520 | 0.56620 | 0.41270 | 0.0670* | |
H11 | 0.68710 | 0.48220 | 0.27240 | 0.0660* | |
H12A | 0.26710 | 0.38660 | 0.26790 | 0.0630* | |
H12B | 0.38910 | 0.35850 | 0.20210 | 0.0630* | |
H13A | 0.29250 | 0.58410 | 0.22700 | 0.0650* | |
H13B | 0.38890 | 0.53390 | 0.15050 | 0.0650* | |
H14A | 0.06290 | 0.40110 | 0.14570 | 0.0660* | |
H14B | 0.11790 | 0.48530 | 0.07980 | 0.0660* | |
H16 | −0.17850 | 0.22470 | 0.03130 | 0.0730* | |
H17 | −0.34570 | 0.02090 | −0.07200 | 0.0870* | |
H18 | −0.24680 | −0.11630 | −0.17550 | 0.0910* | |
H19 | 0.02510 | −0.06320 | −0.17900 | 0.0830* | |
H21 | 0.38980 | 0.35770 | 0.03050 | 0.0620* | |
H22A | 0.47680 | 0.18260 | −0.07220 | 0.1010* | |
H22B | 0.34740 | 0.04150 | −0.11690 | 0.1010* | |
H23 | 0.35180 | 0.22730 | −0.21120 | 0.1130* | |
H24 | 0.36530 | −0.02080 | −0.27320 | 0.1390* | |
H25A | 0.36370 | −0.01500 | −0.41980 | 0.2430* | |
H25B | 0.45340 | 0.13740 | −0.37610 | 0.2430* | |
H25C | 0.26380 | 0.08230 | −0.39980 | 0.2430* | |
HW1 | 0.625 (9) | 0.268 (7) | 0.143 (5) | 0.11 (3)* | |
HW2 | 0.677 (10) | 0.224 (7) | 0.201 (5) | 0.12 (3)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0407 (17) | 0.070 (2) | 0.0457 (17) | 0.0218 (17) | 0.0100 (13) | 0.0135 (16) |
N2 | 0.0431 (18) | 0.058 (2) | 0.0410 (16) | 0.0144 (15) | 0.0074 (13) | 0.0091 (14) |
N3 | 0.0391 (16) | 0.055 (2) | 0.0418 (16) | 0.0164 (15) | 0.0081 (12) | 0.0107 (14) |
N4 | 0.052 (2) | 0.074 (2) | 0.0436 (17) | 0.0306 (18) | 0.0127 (14) | 0.0120 (17) |
C1 | 0.177 (14) | 0.60 (4) | 0.59 (4) | 0.059 (18) | 0.041 (18) | 0.53 (3) |
C2 | 0.089 (8) | 0.50 (3) | 0.40 (2) | 0.047 (12) | 0.045 (10) | 0.37 (2) |
C3 | 0.057 (5) | 0.233 (12) | 0.288 (14) | 0.033 (6) | 0.035 (6) | 0.173 (11) |
C4 | 0.043 (2) | 0.108 (4) | 0.061 (3) | 0.032 (3) | 0.0097 (19) | 0.021 (3) |
C5 | 0.044 (2) | 0.058 (2) | 0.045 (2) | 0.0184 (19) | 0.0102 (16) | 0.0173 (18) |
C6 | 0.055 (2) | 0.068 (3) | 0.043 (2) | 0.024 (2) | 0.0019 (17) | 0.0093 (19) |
C7 | 0.074 (3) | 0.079 (3) | 0.046 (2) | 0.037 (3) | 0.014 (2) | 0.009 (2) |
C8 | 0.063 (3) | 0.087 (3) | 0.057 (3) | 0.038 (3) | 0.023 (2) | 0.014 (2) |
C9 | 0.046 (2) | 0.067 (3) | 0.057 (2) | 0.021 (2) | 0.0142 (18) | 0.020 (2) |
C10 | 0.045 (2) | 0.048 (2) | 0.0401 (18) | 0.0142 (17) | 0.0084 (15) | 0.0125 (16) |
C11 | 0.046 (2) | 0.069 (3) | 0.043 (2) | 0.018 (2) | 0.0134 (16) | 0.0088 (19) |
C12 | 0.046 (2) | 0.050 (2) | 0.047 (2) | 0.0062 (18) | 0.0038 (16) | 0.0061 (17) |
C13 | 0.052 (2) | 0.054 (2) | 0.046 (2) | 0.0144 (19) | 0.0048 (17) | 0.0080 (18) |
C14 | 0.051 (2) | 0.063 (3) | 0.046 (2) | 0.024 (2) | 0.0077 (17) | 0.0073 (18) |
C15 | 0.046 (2) | 0.053 (2) | 0.0389 (18) | 0.0184 (18) | 0.0054 (15) | 0.0133 (16) |
C16 | 0.042 (2) | 0.073 (3) | 0.065 (3) | 0.020 (2) | 0.0046 (19) | 0.021 (2) |
C17 | 0.046 (3) | 0.076 (3) | 0.088 (3) | 0.011 (2) | −0.003 (2) | 0.029 (3) |
C18 | 0.072 (3) | 0.059 (3) | 0.071 (3) | 0.006 (3) | −0.021 (2) | 0.013 (2) |
C19 | 0.080 (4) | 0.062 (3) | 0.055 (2) | 0.031 (3) | −0.005 (2) | 0.003 (2) |
C20 | 0.052 (2) | 0.063 (3) | 0.043 (2) | 0.023 (2) | 0.0033 (17) | 0.0151 (18) |
C21 | 0.040 (2) | 0.068 (3) | 0.043 (2) | 0.0157 (19) | 0.0085 (15) | 0.0129 (19) |
C22 | 0.073 (3) | 0.117 (5) | 0.063 (3) | 0.051 (3) | 0.025 (2) | 0.007 (3) |
C23 | 0.100 (5) | 0.096 (4) | 0.080 (4) | 0.030 (4) | 0.044 (3) | 0.013 (3) |
C24 | 0.159 (7) | 0.124 (6) | 0.082 (4) | 0.058 (5) | 0.042 (4) | 0.042 (4) |
C25 | 0.221 (11) | 0.175 (9) | 0.114 (6) | 0.072 (8) | 0.071 (7) | 0.061 (6) |
O1 | 0.054 (2) | 0.091 (3) | 0.103 (3) | 0.006 (2) | 0.007 (2) | 0.030 (2) |
Br1 | 0.0531 (3) | 0.0932 (4) | 0.0649 (3) | 0.0309 (3) | 0.0197 (2) | 0.0390 (3) |
Br2 | 0.0507 (3) | 0.0840 (4) | 0.0557 (3) | 0.0243 (2) | 0.0134 (2) | 0.0140 (2) |
O1—HW2 | 0.89 (9) | C23—C24 | 1.292 (10) |
O1—HW1 | 0.81 (8) | C24—C25 | 1.466 (12) |
N1—C11 | 1.324 (5) | C1—H1C | 0.9600 |
N1—C4 | 1.476 (6) | C1—H1A | 0.9600 |
N1—C5 | 1.382 (6) | C1—H1B | 0.9600 |
N2—C11 | 1.329 (6) | C2—H2 | 0.9300 |
N2—C12 | 1.461 (5) | C3—H3 | 0.9300 |
N2—C10 | 1.391 (4) | C4—H4A | 0.9700 |
N3—C21 | 1.330 (6) | C4—H4B | 0.9700 |
N3—C14 | 1.466 (5) | C6—H6 | 0.9300 |
N3—C15 | 1.392 (5) | C7—H7 | 0.9300 |
N4—C22 | 1.480 (7) | C8—H8 | 0.9300 |
N4—C20 | 1.391 (6) | C9—H9 | 0.9300 |
N4—C21 | 1.312 (6) | C11—H11 | 0.9300 |
C1—C2 | 1.27 (3) | C12—H12A | 0.9700 |
C2—C3 | 1.16 (2) | C12—H12B | 0.9700 |
C3—C4 | 1.416 (15) | C13—H13A | 0.9700 |
C5—C6 | 1.392 (6) | C13—H13B | 0.9700 |
C5—C10 | 1.388 (6) | C14—H14A | 0.9700 |
C6—C7 | 1.374 (7) | C14—H14B | 0.9700 |
C7—C8 | 1.392 (7) | C16—H16 | 0.9300 |
C8—C9 | 1.375 (6) | C17—H17 | 0.9300 |
C9—C10 | 1.381 (6) | C18—H18 | 0.9300 |
C12—C13 | 1.519 (6) | C19—H19 | 0.9300 |
C13—C14 | 1.512 (6) | C21—H21 | 0.9300 |
C15—C16 | 1.382 (7) | C22—H22B | 0.9700 |
C15—C20 | 1.395 (6) | C22—H22A | 0.9700 |
C16—C17 | 1.371 (8) | C23—H23 | 0.9300 |
C17—C18 | 1.384 (8) | C24—H24 | 0.9300 |
C18—C19 | 1.369 (8) | C25—H25C | 0.9600 |
C19—C20 | 1.384 (7) | C25—H25A | 0.9600 |
C22—C23 | 1.462 (8) | C25—H25B | 0.9600 |
Br1···C21 | 3.550 (5) | C19···H1Ci | 2.8300 |
Br1···O1 | 3.342 (6) | C21···H12B | 2.7500 |
Br1···C11 | 3.536 (4) | C21···H13B | 2.7300 |
Br1···C14i | 3.696 (4) | C22···H19 | 3.0600 |
Br1···C21i | 3.335 (5) | HW1···H11 | 2.4900 |
Br1···N3i | 3.555 (3) | HW1···Br1 | 2.54 (8) |
Br2···O1ii | 3.333 (5) | HW1···H16iii | 2.5800 |
Br1···HW1 | 2.54 (8) | H1C···C19i | 2.8300 |
Br1···H11 | 2.7600 | H2···H4B | 2.3700 |
Br1···H21 | 2.6500 | HW2···Br2iii | 2.45 (8) |
Br1···H16iii | 3.0600 | H4A···H6 | 2.5200 |
Br1···H14Bi | 3.1400 | H4A···C6 | 2.9100 |
Br1···H21i | 3.2000 | H4A···Br2iv | 2.8100 |
Br2···H14A | 3.0500 | H4B···H2 | 2.3700 |
Br2···HW2ii | 2.45 (8) | H4B···H11 | 2.5700 |
Br2···H4Bii | 2.8600 | H4B···Br2iii | 2.8600 |
Br2···H4Aiv | 2.8100 | H6···Br2iv | 3.1400 |
Br2···H6iv | 3.1400 | H6···C4 | 3.0400 |
Br2···H8v | 2.9900 | H6···H4A | 2.5200 |
Br2···H19vi | 2.9200 | H8···Br2v | 2.9900 |
Br2···H9 | 3.1900 | H9···H12A | 2.5700 |
Br2···H12A | 2.8900 | H9···C12 | 2.9900 |
O1···Br2iii | 3.333 (5) | H9···Br2 | 3.1900 |
O1···C17vi | 3.369 (8) | H11···Br1 | 2.7600 |
O1···Br1 | 3.342 (6) | H11···H4B | 2.5700 |
O1···H12B | 2.7400 | H11···O1 | 2.8800 |
O1···H22Bvii | 2.9200 | H11···HW1 | 2.4900 |
O1···H11 | 2.8800 | H11···H12B | 2.5300 |
O1···H18vi | 2.9100 | H12A···C9 | 2.9400 |
O1···H17vi | 2.6700 | H12A···H9 | 2.5700 |
N1···N2 | 2.177 (5) | H12A···Br2 | 2.8900 |
N2···N1 | 2.177 (5) | H12A···H14A | 2.4800 |
N3···Br1i | 3.555 (3) | H12B···N3 | 2.8000 |
N3···N4 | 2.176 (5) | H12B···O1 | 2.7400 |
N4···N3 | 2.176 (5) | H12B···H18vi | 2.5400 |
N3···H12B | 2.8000 | H12B···H21 | 2.5500 |
C1···C19i | 3.60 (2) | H12B···H11 | 2.5300 |
C5···C9iv | 3.473 (6) | H12B···C21 | 2.7500 |
C8···C11iv | 3.526 (7) | H13A···C10 | 3.0300 |
C9···C5iv | 3.473 (6) | H13B···H21 | 2.2600 |
C11···C8iv | 3.526 (7) | H13B···C21 | 2.7300 |
C11···Br1 | 3.536 (4) | H14A···Br2 | 3.0500 |
C12···C21 | 3.300 (6) | H14A···C16 | 2.9000 |
C14···Br1i | 3.696 (4) | H14A···H12A | 2.4800 |
C15···C18vi | 3.594 (7) | H14A···H16 | 2.5000 |
C15···C19vi | 3.538 (6) | H14B···Br1i | 3.1400 |
C16···C19vi | 3.596 (7) | H16···C14 | 2.9800 |
C17···O1vi | 3.369 (8) | H16···Br1ii | 3.0600 |
C18···C20vi | 3.572 (7) | H16···HW1ii | 2.5800 |
C18···C15vi | 3.594 (7) | H16···H14A | 2.5000 |
C19···C16vi | 3.596 (7) | H17···O1vi | 2.6700 |
C19···C15vi | 3.538 (6) | H18···H12Bvi | 2.5400 |
C19···C1i | 3.60 (2) | H18···O1vi | 2.9100 |
C20···C18vi | 3.572 (7) | H19···C22 | 3.0600 |
C21···Br1 | 3.550 (5) | H19···Br2vi | 2.9200 |
C21···C12 | 3.300 (6) | H21···Br1 | 2.6500 |
C21···Br1i | 3.335 (5) | H21···C13 | 2.7300 |
C4···H6 | 3.0400 | H21···H12B | 2.5500 |
C6···H4A | 2.9100 | H21···H13B | 2.2600 |
C9···H12A | 2.9400 | H21···H22A | 2.4800 |
C10···H13A | 3.0300 | H21···Br1i | 3.2000 |
C12···H9 | 2.9900 | H22A···H21 | 2.4800 |
C13···H21 | 2.7300 | H22B···C19 | 3.0400 |
C14···H16 | 2.9800 | H22B···H24 | 2.2700 |
C16···H14A | 2.9000 | H22B···O1vii | 2.9200 |
C19···H22B | 3.0400 | H24···H22B | 2.2700 |
HW1—O1—HW2 | 91 (7) | N1—C4—H4B | 109.00 |
C4—N1—C11 | 124.1 (4) | C3—C4—H4B | 109.00 |
C5—N1—C11 | 108.5 (4) | H4A—C4—H4B | 108.00 |
C4—N1—C5 | 127.4 (3) | C3—C4—H4A | 109.00 |
C10—N2—C11 | 108.2 (3) | C5—C6—H6 | 122.00 |
C11—N2—C12 | 125.7 (3) | C7—C6—H6 | 122.00 |
C10—N2—C12 | 126.1 (4) | C6—C7—H7 | 119.00 |
C14—N3—C15 | 125.6 (4) | C8—C7—H7 | 119.00 |
C15—N3—C21 | 107.6 (3) | C9—C8—H8 | 119.00 |
C14—N3—C21 | 126.6 (4) | C7—C8—H8 | 119.00 |
C20—N4—C21 | 108.8 (4) | C10—C9—H9 | 122.00 |
C20—N4—C22 | 126.5 (4) | C8—C9—H9 | 122.00 |
C21—N4—C22 | 124.7 (4) | N1—C11—H11 | 125.00 |
C1—C2—C3 | 155 (2) | N2—C11—H11 | 125.00 |
C2—C3—C4 | 142.0 (16) | N2—C12—H12A | 109.00 |
N1—C4—C3 | 111.2 (6) | N2—C12—H12B | 109.00 |
N1—C5—C10 | 106.8 (3) | C13—C12—H12B | 109.00 |
C6—C5—C10 | 121.5 (4) | H12A—C12—H12B | 108.00 |
N1—C5—C6 | 131.7 (4) | C13—C12—H12A | 109.00 |
C5—C6—C7 | 115.8 (4) | C12—C13—H13A | 109.00 |
C6—C7—C8 | 122.6 (4) | C14—C13—H13A | 109.00 |
C7—C8—C9 | 121.4 (5) | C14—C13—H13B | 109.00 |
C8—C9—C10 | 116.4 (4) | C12—C13—H13B | 109.00 |
N2—C10—C5 | 106.3 (4) | H13A—C13—H13B | 108.00 |
C5—C10—C9 | 122.1 (3) | N3—C14—H14B | 109.00 |
N2—C10—C9 | 131.6 (4) | C13—C14—H14A | 109.00 |
N1—C11—N2 | 110.2 (4) | C13—C14—H14B | 109.00 |
N2—C12—C13 | 111.9 (4) | H14A—C14—H14B | 108.00 |
C12—C13—C14 | 113.4 (4) | N3—C14—H14A | 109.00 |
N3—C14—C13 | 113.3 (4) | C17—C16—H16 | 122.00 |
N3—C15—C16 | 131.2 (4) | C15—C16—H16 | 122.00 |
C16—C15—C20 | 122.0 (4) | C16—C17—H17 | 119.00 |
N3—C15—C20 | 106.8 (4) | C18—C17—H17 | 119.00 |
C15—C16—C17 | 116.0 (4) | C19—C18—H18 | 119.00 |
C16—C17—C18 | 121.9 (5) | C17—C18—H18 | 119.00 |
C17—C18—C19 | 122.7 (5) | C18—C19—H19 | 122.00 |
C18—C19—C20 | 115.9 (5) | C20—C19—H19 | 122.00 |
N4—C20—C15 | 105.8 (4) | N3—C21—H21 | 125.00 |
N4—C20—C19 | 132.7 (4) | N4—C21—H21 | 125.00 |
C15—C20—C19 | 121.4 (4) | N4—C22—H22B | 109.00 |
N3—C21—N4 | 110.9 (4) | C23—C22—H22A | 109.00 |
N4—C22—C23 | 111.9 (5) | C23—C22—H22B | 109.00 |
C22—C23—C24 | 123.5 (7) | H22A—C22—H22B | 108.00 |
C23—C24—C25 | 127.2 (9) | N4—C22—H22A | 109.00 |
C2—C1—H1A | 110.00 | C24—C23—H23 | 118.00 |
C2—C1—H1B | 109.00 | C22—C23—H23 | 118.00 |
H1A—C1—H1B | 109.00 | C23—C24—H24 | 116.00 |
H1A—C1—H1C | 109.00 | C25—C24—H24 | 116.00 |
H1B—C1—H1C | 109.00 | C24—C25—H25B | 109.00 |
C2—C1—H1C | 109.00 | C24—C25—H25C | 110.00 |
C3—C2—H2 | 103.00 | C24—C25—H25A | 109.00 |
C1—C2—H2 | 103.00 | H25A—C25—H25C | 110.00 |
C2—C3—H3 | 109.00 | H25B—C25—H25C | 109.00 |
C4—C3—H3 | 109.00 | H25A—C25—H25B | 110.00 |
N1—C4—H4A | 109.00 | ||
C11—N1—C5—C10 | −0.5 (5) | C22—N4—C20—C19 | 2.6 (8) |
C4—N1—C11—N2 | 179.3 (4) | C22—N4—C20—C15 | −179.7 (4) |
C5—N1—C4—C3 | −94.8 (8) | C1—C2—C3—C4 | 179 (3) |
C11—N1—C4—C3 | 86.9 (8) | C2—C3—C4—N1 | −102.2 (19) |
C4—N1—C5—C6 | 0.2 (8) | C6—C5—C10—C9 | −0.5 (7) |
C11—N1—C5—C6 | 178.8 (5) | C6—C5—C10—N2 | −179.2 (4) |
C4—N1—C5—C10 | −179.1 (5) | C10—C5—C6—C7 | −0.8 (7) |
C5—N1—C11—N2 | 0.7 (5) | N1—C5—C6—C7 | −180.0 (5) |
C11—N2—C10—C9 | −178.3 (5) | N1—C5—C10—C9 | 178.9 (4) |
C12—N2—C10—C9 | 0.1 (7) | N1—C5—C10—N2 | 0.2 (5) |
C10—N2—C11—N1 | −0.5 (5) | C5—C6—C7—C8 | 1.6 (7) |
C12—N2—C11—N1 | −179.0 (4) | C6—C7—C8—C9 | −1.2 (8) |
C10—N2—C12—C13 | 83.4 (5) | C7—C8—C9—C10 | −0.1 (7) |
C11—N2—C12—C13 | −98.4 (5) | C8—C9—C10—C5 | 0.9 (7) |
C12—N2—C10—C5 | 178.7 (4) | C8—C9—C10—N2 | 179.3 (5) |
C11—N2—C10—C5 | 0.2 (5) | N2—C12—C13—C14 | −169.9 (4) |
C21—N3—C14—C13 | −29.1 (6) | C12—C13—C14—N3 | −62.0 (5) |
C15—N3—C14—C13 | 156.7 (4) | N3—C15—C20—N4 | −0.6 (4) |
C14—N3—C15—C16 | −3.4 (7) | N3—C15—C16—C17 | −178.5 (4) |
C15—N3—C21—N4 | −1.7 (5) | C20—C15—C16—C17 | 1.7 (7) |
C14—N3—C21—N4 | −176.7 (4) | C16—C15—C20—C19 | −2.7 (7) |
C14—N3—C15—C20 | 176.4 (4) | N3—C15—C20—C19 | 177.6 (4) |
C21—N3—C15—C20 | 1.4 (4) | C16—C15—C20—N4 | 179.3 (4) |
C21—N3—C15—C16 | −178.4 (5) | C15—C16—C17—C18 | −0.9 (8) |
C21—N4—C20—C15 | −0.4 (5) | C16—C17—C18—C19 | 0.9 (9) |
C22—N4—C21—N3 | −179.4 (4) | C17—C18—C19—C20 | −1.6 (8) |
C20—N4—C22—C23 | 77.2 (7) | C18—C19—C20—N4 | 180.0 (5) |
C20—N4—C21—N3 | 1.3 (5) | C18—C19—C20—C15 | 2.5 (7) |
C21—N4—C22—C23 | −101.9 (6) | N4—C22—C23—C24 | −136.1 (8) |
C21—N4—C20—C19 | −178.2 (5) | C22—C23—C24—C25 | −177.3 (9) |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x−1, y, z; (iii) x+1, y, z; (iv) −x+1, −y+1, −z+1; (v) −x, −y+1, −z+1; (vi) −x, −y, −z; (vii) −x+1, −y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—HW1···Br1 | 0.81 (8) | 2.54 (8) | 3.342 (6) | 171 (8) |
O1—HW2···Br2iii | 0.89 (9) | 2.45 (8) | 3.333 (5) | 171 (7) |
C4—H4A···Br2iv | 0.97 | 2.81 | 3.773 (4) | 172 |
C4—H4B···Br2iii | 0.97 | 2.86 | 3.802 (6) | 164 |
C11—H11···Br1 | 0.93 | 2.76 | 3.536 (4) | 142 |
C12—H12A···Br2 | 0.97 | 2.89 | 3.822 (5) | 161 |
C19—H19···Br2vi | 0.93 | 2.92 | 3.816 (5) | 162 |
C21—H21···Br1 | 0.93 | 2.65 | 3.550 (5) | 162 |
Symmetry codes: (iii) x+1, y, z; (iv) −x+1, −y+1, −z+1; (vi) −x, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C25H30N42+·2Br−·H2O |
Mr | 564.35 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 8.7989 (9), 11.1878 (13), 14.8813 (14) |
α, β, γ (°) | 106.381 (8), 96.490 (8), 106.227 (8) |
V (Å3) | 1319.9 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.09 |
Crystal size (mm) | 0.53 × 0.45 × 0.31 |
Data collection | |
Diffractometer | Stoe IPDSII diffractometer |
Absorption correction | Integration (X-RED32; Stoe & Cie, 2002) |
Tmin, Tmax | 0.291, 0.447 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16109, 6181, 4101 |
Rint | 0.063 |
(sin θ/λ)max (Å−1) | 0.654 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.124, 1.05 |
No. of reflections | 6181 |
No. of parameters | 297 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.57, −0.41 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-RED32 (Stoe & Cie, 2002), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—HW1···Br1 | 0.81 (8) | 2.54 (8) | 3.342 (6) | 171 (8) |
O1—HW2···Br2i | 0.89 (9) | 2.45 (8) | 3.333 (5) | 171 (7) |
C4—H4A···Br2ii | 0.97 | 2.81 | 3.773 (4) | 172 |
C4—H4B···Br2i | 0.97 | 2.86 | 3.802 (6) | 164 |
C11—H11···Br1 | 0.93 | 2.76 | 3.536 (4) | 142 |
C12—H12A···Br2 | 0.97 | 2.89 | 3.822 (5) | 161 |
C19—H19···Br2iii | 0.93 | 2.92 | 3.816 (5) | 162 |
C21—H21···Br1 | 0.93 | 2.65 | 3.550 (5) | 162 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y+1, −z+1; (iii) −x, −y, −z. |
In the light of the general importance of benzimidazole compounds, the study of bisbenzimidazoles and their related derivatives has remained an active area of research despite extensive investigation. They are present in various naturally occurring drugs such as omeprazole, astemizole and emedastine difumarate (Sakai et al., 1989). Substituted benzimidazole compounds are established pharmacophores in parasitic chemotheraphy. They also show antiviral (Tidwell et al., 1993), antimicrobial (Küçükbay et al., 1995; Küçükbay et al., 2001), antitumor (Turner and Denny, 1996), antihistaminic, anticoagulant and anti-inflammatory activities (Hall et al., 1998). The objective of this study was to elucidate the crystal structure of the title compound (I) and to compare the results obtained with our previous studies on related bis-benzimidazole compounds (Öztürk et al., 2003; Akkurt et al., 2003; Akkurt et al., 2006).
In (I) (Fig. 1), the bond lengths and angles are generally within normal ranges (Allen et al., 1987). The two benzimidazole ring systems of (I), A (N1/N2/C5–C11) and B (N3/N4/C15–C21), are essentially planar, with maximum deviations of 0.011 (4) Å for C10 and -0.10 (5) Å for C11 in A, and 0.023 (3) Å for N3 and 0.016 (5) Å for C19 in B. The dihedral angle between these two ring systems A and B is 25.87 (15) °. This angle is 31.84 (11)° in 3,30-bis(cyclohexylmethyl)- 1,10-propylenedibenzimidazolium dibromide monohydrate (Akkurt et al., 2006) and 88.42 (4)° in 3,30-bis(3- cyanopropyl)-1,10-propylene- di(benzimidazolium) dichloride dihydrate (Akkurt et al., 2003). This divergence may be due to the interactions of the different substituents bounded to the benzimidazole ring system.
The crystal structure of (I) is stabilized by inter and intramolecular O—H···Br and C—H···Br hydrogen bonding interactions, involving the H atoms of the water molecule (Table 1 and Fig. 2).