The three title compounds were obtained by reactions which mimic, with more extreme conditions, the
in vivo metabolism of barbiturates. 1-(2-Cyclohex-2-enylpropionyl)-3-methylurea, C
11H
18N
2O
2, (I), and 2-ethylpentanamide, C
8H
17NO, (III), both crystallize with two unique molecules in the asymmetric unit; in the case of (III), one unique molecule exhibits whole-molecule disorder. 2-Ethyl-5-methylhexanamide, C
9H
19NO, (II), crystallizes as a fully ordered molecule with
Z' = 1. In the crystal structures, three different hydrogen-bonding motifs are observed: in (I) a combination of
R22(4) and
R22(8) motifs, and in (II) and (III) a combination of
R42(8) and
R22(8) motifs. In all three structures, one-dimensional ribbons are formed by N-H
O hydrogen-bonding interactions.
Supporting information
CCDC references: 813491; 813492; 813493
The 5,5-disubstituted barbituric acids were obtained as commercial samples from
Professor Roger Griffin, Newcastle University. Caesium hydroxide monohydrate
was purchased from Lancaster Chemicals. All reagents were used without further
purification.
For the preparation of (I), 1-(2-cyclohex-2-enylpropionyl)-3-methylurea,
hexobarbitone (0.223 g, 0.94 mmol) and CsOH.H2O (0.169 g, 1 mmol) were
dissolved in boiling distilled water (40 ml). The solution was boiled until
ca 15 ml remained when the hot solution was transferred to a separate
sample vial and set aside to cool undisturbed at room temperature. Large,
colourless, lath crystals of (I) appeared after approximately 2 weeks (yield
35 mg, 17.7%).
For the preparation of (II), 2-ethyl-5-methylhexanamide, amylobarbitone (0.228 g, 1 mmol) was placed in a Teflon-lined steel autoclave along with distilled
water (10 ml). The sealed autoclave was placed in an oven and kept at 453 K
for 48 h after which time the oven temperature was cooled slowly to 298 K over
a period of 18 h. Large, colourless, lath-shaped crystals of (II) were removed
from the autoclave and stored in distilled water (yield 55 mg, 35.03%).
For the preparation of (III), 2-ethylpentanamide, butobarbitone (0.219 g, 1 mmol) was placed in a Teflon-lined steel autoclave along with distilled water
(10 ml). The sealed autoclave was placed in an oven and kept at 453 K for 48 h
after which time the oven temperature was cooled slowly to 298 K over a period
of 18 h. Large, colourless, lath-shaped crystals of (III) were removed from
the autoclave and stored in distilled water (yield 45 mg, 32.59%).
All H atoms were first located in a difference Fourier map. In (I) N-bound H
atoms were freely refined. In (II) and (III) N-bound H atoms were refined as
riding atoms with Uiso(H) = 1.5Ueq(N) and a fixed N—H
distance of 0.88 Å. In all structures, C-bound H atoms were refined as
riding, with Uiso(H) = 1.2Ueq(C) [or 1.5Ueq (C) for
methyl hydrogen atoms] and fixed C—H distances (0.95–1.00 Å). Molecule
A in the asymmetric unit of compound (III) exhibits whole-molecule
disorder, which was refined over two positions with occupancies of 0.559:0.441
(8). Bond distance restraints were used to control the refinement of the
disordered molecule. Real and imaginary components of the anomalous scattering
factors for (II) and (III) were calculated using WinGX (Farrugia,
1999).
Data collection: COLLECT (Nonius, 1998) for (I); APEX2 (Bruker, 2007) for (II), (III). Cell refinement: DENZO (Otwinowski & Minor, 1997) for (I); APEX2 (Bruker, 2007) for (II), (III). Data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997) for (I); APEX2 (Bruker, 2007) for (II), (III). For all compounds, program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 1999) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), publCIF (Westrip, 2010) and local programs.
(I) 1-(2-Cyclohex-2-enylpropionyl)-3-methylurea
top
Crystal data top
C11H18N2O2 | F(000) = 912 |
Mr = 210.27 | Dx = 1.220 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 28727 reflections |
a = 10.108 (2) Å | θ = 2.9–27.5° |
b = 21.824 (4) Å | µ = 0.09 mm−1 |
c = 10.393 (2) Å | T = 120 K |
β = 92.52 (3)° | Slab, colourless |
V = 2290.4 (8) Å3 | 0.36 × 0.08 × 0.03 mm |
Z = 8 | |
Data collection top
Nonius KappaCCD diffractometer | 4030 independent reflections |
Radiation source: Enraf–Nonius FR591 rotating anode | 3184 reflections with I > 2σ(I) |
Mirror optics monochromator | Rint = 0.110 |
ϕ and ω scans | θmax = 25.0°, θmin = 3.0° |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | h = −11→12 |
Tmin = 0.970, Tmax = 0.998 | k = −25→25 |
37076 measured reflections | l = −12→12 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.058 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.140 | w = 1/[σ2(Fo2) + (0.0417P)2 + 2.3454P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max < 0.001 |
4030 reflections | Δρmax = 0.26 e Å−3 |
292 parameters | Δρmin = −0.23 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0065 (10) |
Crystal data top
C11H18N2O2 | V = 2290.4 (8) Å3 |
Mr = 210.27 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.108 (2) Å | µ = 0.09 mm−1 |
b = 21.824 (4) Å | T = 120 K |
c = 10.393 (2) Å | 0.36 × 0.08 × 0.03 mm |
β = 92.52 (3)° | |
Data collection top
Nonius KappaCCD diffractometer | 4030 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 3184 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.998 | Rint = 0.110 |
37076 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.058 | 0 restraints |
wR(F2) = 0.140 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.26 e Å−3 |
4030 reflections | Δρmin = −0.23 e Å−3 |
292 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.69715 (16) | 0.09347 (8) | 0.21980 (16) | 0.0295 (4) | |
O2 | 1.01230 (16) | 0.08578 (8) | 0.48868 (16) | 0.0291 (4) | |
N1 | 0.9204 (2) | 0.10154 (9) | 0.2397 (2) | 0.0250 (5) | |
H1N | 0.991 (3) | 0.0993 (13) | 0.285 (3) | 0.036 (8)* | |
N2 | 0.7945 (2) | 0.08685 (10) | 0.41984 (19) | 0.0252 (5) | |
H2N | 0.706 (3) | 0.0865 (11) | 0.455 (2) | 0.022 (6)* | |
C1 | 0.9357 (3) | 0.10554 (13) | 0.1019 (2) | 0.0336 (6) | |
H1A | 0.9042 | 0.0675 | 0.0607 | 0.050* | |
H1B | 1.0294 | 0.1116 | 0.0847 | 0.050* | |
H1C | 0.8839 | 0.1402 | 0.0670 | 0.050* | |
C2 | 0.8019 (2) | 0.09416 (10) | 0.2862 (2) | 0.0223 (5) | |
C3 | 0.8949 (2) | 0.08320 (11) | 0.5123 (2) | 0.0230 (5) | |
C4 | 0.8442 (2) | 0.07506 (11) | 0.6467 (2) | 0.0237 (5) | |
H4 | 0.7728 | 0.0433 | 0.6417 | 0.028* | |
C5 | 0.9531 (3) | 0.05215 (12) | 0.7400 (2) | 0.0301 (6) | |
H5A | 0.9920 | 0.0147 | 0.7057 | 0.045* | |
H5B | 0.9158 | 0.0433 | 0.8234 | 0.045* | |
H5C | 1.0218 | 0.0836 | 0.7509 | 0.045* | |
C6 | 0.7837 (2) | 0.13424 (11) | 0.6959 (2) | 0.0234 (5) | |
C7 | 0.8264 (3) | 0.18926 (12) | 0.6624 (2) | 0.0319 (6) | |
H7 | 0.8920 | 0.1914 | 0.5998 | 0.038* | |
C8 | 0.7779 (3) | 0.24788 (13) | 0.7169 (3) | 0.0412 (7) | |
H8A | 0.7228 | 0.2695 | 0.6502 | 0.049* | |
H8B | 0.8547 | 0.2743 | 0.7407 | 0.049* | |
C9 | 0.6967 (3) | 0.23779 (13) | 0.8350 (3) | 0.0462 (8) | |
H9A | 0.7568 | 0.2291 | 0.9107 | 0.055* | |
H9B | 0.6462 | 0.2755 | 0.8532 | 0.055* | |
C10 | 0.6028 (3) | 0.18529 (13) | 0.8137 (3) | 0.0423 (7) | |
H10A | 0.5422 | 0.1943 | 0.7386 | 0.051* | |
H10B | 0.5486 | 0.1805 | 0.8901 | 0.051* | |
C11 | 0.6762 (3) | 0.12600 (12) | 0.7900 (2) | 0.0307 (6) | |
H11A | 0.7158 | 0.1107 | 0.8727 | 0.037* | |
H11B | 0.6126 | 0.0948 | 0.7562 | 0.037* | |
O51 | 0.54140 (16) | 0.07316 (9) | 0.51051 (16) | 0.0313 (4) | |
O52 | 0.21841 (16) | 0.08453 (9) | 0.25643 (16) | 0.0334 (5) | |
N51 | 0.3185 (2) | 0.07093 (9) | 0.49911 (19) | 0.0240 (5) | |
H51N | 0.242 (3) | 0.0764 (13) | 0.452 (3) | 0.037 (8)* | |
N52 | 0.4386 (2) | 0.08232 (10) | 0.31293 (19) | 0.0251 (5) | |
H52N | 0.519 (3) | 0.0840 (10) | 0.281 (2) | 0.016 (6)* | |
C51 | 0.3115 (2) | 0.06391 (13) | 0.6379 (2) | 0.0297 (6) | |
H51A | 0.3630 | 0.0279 | 0.6662 | 0.045* | |
H51B | 0.2190 | 0.0585 | 0.6600 | 0.045* | |
H51C | 0.3478 | 0.1006 | 0.6810 | 0.045* | |
C52 | 0.4347 (2) | 0.07512 (11) | 0.4482 (2) | 0.0240 (5) | |
C53 | 0.3351 (2) | 0.08618 (11) | 0.2261 (2) | 0.0240 (5) | |
C54 | 0.3714 (2) | 0.09137 (11) | 0.0854 (2) | 0.0258 (6) | |
H54 | 0.4700 | 0.0947 | 0.0832 | 0.031* | |
C55 | 0.3297 (3) | 0.03268 (12) | 0.0171 (3) | 0.0348 (6) | |
H55A | 0.2335 | 0.0277 | 0.0206 | 0.052* | |
H55B | 0.3742 | −0.0022 | 0.0595 | 0.052* | |
H55C | 0.3542 | 0.0347 | −0.0730 | 0.052* | |
C56 | 0.3120 (2) | 0.14977 (11) | 0.0299 (2) | 0.0227 (5) | |
C57 | 0.2223 (2) | 0.15041 (12) | −0.0672 (2) | 0.0275 (6) | |
H57 | 0.1974 | 0.1123 | −0.1052 | 0.033* | |
C58 | 0.1577 (3) | 0.20738 (13) | −0.1208 (3) | 0.0376 (7) | |
H58A | 0.0613 | 0.2002 | −0.1334 | 0.045* | |
H58B | 0.1933 | 0.2164 | −0.2059 | 0.045* | |
C59 | 0.1809 (3) | 0.26257 (14) | −0.0323 (3) | 0.0459 (8) | |
H59A | 0.1575 | 0.3007 | −0.0797 | 0.055* | |
H59B | 0.1235 | 0.2594 | 0.0422 | 0.055* | |
C60 | 0.3254 (3) | 0.26508 (13) | 0.0150 (3) | 0.0415 (7) | |
H60A | 0.3405 | 0.3020 | 0.0691 | 0.050* | |
H60B | 0.3827 | 0.2680 | −0.0596 | 0.050* | |
C61 | 0.3614 (3) | 0.20780 (12) | 0.0933 (2) | 0.0311 (6) | |
H61A | 0.4589 | 0.2055 | 0.1061 | 0.037* | |
H61B | 0.3235 | 0.2113 | 0.1793 | 0.037* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0206 (9) | 0.0437 (11) | 0.0241 (9) | −0.0017 (7) | −0.0019 (7) | 0.0017 (8) |
O2 | 0.0222 (9) | 0.0392 (11) | 0.0258 (9) | −0.0002 (7) | 0.0001 (7) | −0.0006 (8) |
N1 | 0.0207 (11) | 0.0309 (12) | 0.0232 (11) | 0.0009 (9) | −0.0010 (9) | 0.0007 (9) |
N2 | 0.0200 (11) | 0.0339 (12) | 0.0215 (11) | 0.0005 (9) | −0.0005 (8) | 0.0001 (9) |
C1 | 0.0283 (14) | 0.0502 (18) | 0.0223 (13) | 0.0011 (12) | 0.0024 (10) | 0.0032 (12) |
C2 | 0.0231 (13) | 0.0191 (12) | 0.0247 (13) | 0.0011 (9) | 0.0003 (10) | −0.0007 (10) |
C3 | 0.0213 (13) | 0.0212 (12) | 0.0264 (13) | −0.0002 (10) | −0.0002 (10) | −0.0015 (10) |
C4 | 0.0226 (12) | 0.0256 (13) | 0.0226 (13) | −0.0004 (10) | −0.0006 (9) | −0.0007 (10) |
C5 | 0.0326 (14) | 0.0320 (15) | 0.0254 (13) | 0.0057 (11) | −0.0018 (11) | 0.0008 (11) |
C6 | 0.0212 (12) | 0.0267 (13) | 0.0219 (12) | 0.0023 (10) | −0.0035 (9) | 0.0016 (10) |
C7 | 0.0311 (14) | 0.0351 (16) | 0.0296 (14) | −0.0008 (11) | 0.0023 (11) | −0.0011 (12) |
C8 | 0.0531 (18) | 0.0292 (15) | 0.0418 (17) | −0.0005 (13) | 0.0074 (13) | −0.0029 (13) |
C9 | 0.068 (2) | 0.0331 (17) | 0.0384 (17) | 0.0066 (15) | 0.0127 (15) | −0.0071 (13) |
C10 | 0.0441 (17) | 0.0416 (17) | 0.0427 (17) | 0.0090 (13) | 0.0182 (13) | −0.0006 (14) |
C11 | 0.0316 (14) | 0.0317 (15) | 0.0288 (14) | 0.0014 (11) | 0.0024 (11) | 0.0006 (11) |
O51 | 0.0188 (9) | 0.0511 (12) | 0.0236 (9) | −0.0018 (8) | −0.0021 (7) | 0.0022 (8) |
O52 | 0.0199 (9) | 0.0530 (12) | 0.0270 (10) | −0.0007 (8) | −0.0008 (7) | 0.0057 (8) |
N51 | 0.0192 (11) | 0.0333 (12) | 0.0195 (10) | 0.0004 (9) | −0.0004 (8) | −0.0009 (9) |
N52 | 0.0222 (11) | 0.0314 (12) | 0.0216 (11) | 0.0002 (9) | 0.0001 (9) | 0.0023 (9) |
C51 | 0.0261 (13) | 0.0400 (16) | 0.0232 (13) | −0.0011 (11) | 0.0033 (10) | −0.0001 (11) |
C52 | 0.0239 (13) | 0.0233 (13) | 0.0246 (13) | −0.0001 (10) | 0.0006 (10) | 0.0008 (10) |
C53 | 0.0251 (13) | 0.0222 (13) | 0.0246 (13) | 0.0003 (10) | −0.0013 (10) | 0.0028 (10) |
C54 | 0.0244 (13) | 0.0299 (14) | 0.0228 (12) | 0.0006 (10) | −0.0007 (10) | 0.0018 (10) |
C55 | 0.0445 (16) | 0.0302 (15) | 0.0294 (14) | 0.0023 (12) | −0.0003 (12) | 0.0001 (12) |
C56 | 0.0230 (12) | 0.0265 (13) | 0.0188 (12) | −0.0011 (10) | 0.0032 (9) | 0.0019 (10) |
C57 | 0.0288 (13) | 0.0327 (14) | 0.0209 (12) | −0.0024 (11) | −0.0008 (10) | 0.0021 (11) |
C58 | 0.0343 (15) | 0.0445 (17) | 0.0334 (15) | 0.0026 (12) | −0.0030 (12) | 0.0114 (13) |
C59 | 0.0521 (19) | 0.0385 (17) | 0.0471 (18) | 0.0163 (14) | 0.0019 (14) | 0.0090 (14) |
C60 | 0.0521 (18) | 0.0263 (15) | 0.0459 (17) | −0.0015 (13) | −0.0008 (14) | −0.0020 (13) |
C61 | 0.0361 (15) | 0.0302 (15) | 0.0267 (14) | −0.0024 (11) | −0.0018 (11) | −0.0031 (11) |
Geometric parameters (Å, º) top
O1—C2 | 1.238 (3) | O51—C52 | 1.234 (3) |
O2—C3 | 1.224 (3) | O52—C53 | 1.234 (3) |
N1—H1N | 0.84 (3) | N51—H51N | 0.90 (3) |
N1—C1 | 1.451 (3) | N51—C51 | 1.456 (3) |
N1—C2 | 1.322 (3) | N51—C52 | 1.313 (3) |
N2—H2N | 0.98 (3) | N52—H52N | 0.89 (3) |
N2—C2 | 1.403 (3) | N52—C52 | 1.417 (3) |
N2—C3 | 1.369 (3) | N52—C53 | 1.355 (3) |
C1—H1A | 0.980 | C51—H51A | 0.980 |
C1—H1B | 0.980 | C51—H51B | 0.980 |
C1—H1C | 0.980 | C51—H51C | 0.980 |
C3—C4 | 1.519 (3) | C53—C54 | 1.527 (3) |
C4—H4 | 1.000 | C54—H54 | 1.000 |
C4—C5 | 1.519 (3) | C54—C55 | 1.515 (4) |
C4—C6 | 1.526 (3) | C54—C56 | 1.513 (3) |
C5—H5A | 0.980 | C55—H55A | 0.980 |
C5—H5B | 0.980 | C55—H55B | 0.980 |
C5—H5C | 0.980 | C55—H55C | 0.980 |
C6—C7 | 1.327 (4) | C56—C57 | 1.326 (3) |
C6—C11 | 1.505 (3) | C56—C61 | 1.503 (3) |
C7—H7 | 0.950 | C57—H57 | 0.950 |
C7—C8 | 1.491 (4) | C57—C58 | 1.500 (4) |
C8—H8A | 0.990 | C58—H58A | 0.990 |
C8—H8B | 0.990 | C58—H58B | 0.990 |
C8—C9 | 1.522 (4) | C58—C59 | 1.527 (4) |
C9—H9A | 0.990 | C59—H59A | 0.990 |
C9—H9B | 0.990 | C59—H59B | 0.990 |
C9—C10 | 1.499 (4) | C59—C60 | 1.521 (4) |
C10—H10A | 0.990 | C60—H60A | 0.990 |
C10—H10B | 0.990 | C60—H60B | 0.990 |
C10—C11 | 1.517 (4) | C60—C61 | 1.527 (4) |
C11—H11A | 0.990 | C61—H61A | 0.990 |
C11—H11B | 0.990 | C61—H61B | 0.990 |
| | | |
H1N—N1—C1 | 116 (2) | H51N—N51—C51 | 118.4 (18) |
H1N—N1—C2 | 123 (2) | H51N—N51—C52 | 121.9 (18) |
C1—N1—C2 | 120.4 (2) | C51—N51—C52 | 119.3 (2) |
H2N—N2—C2 | 117.4 (14) | H52N—N52—C52 | 116.2 (15) |
H2N—N2—C3 | 113.4 (14) | H52N—N52—C53 | 115.9 (15) |
C2—N2—C3 | 129.2 (2) | C52—N52—C53 | 127.9 (2) |
N1—C1—H1A | 109.5 | N51—C51—H51A | 109.5 |
N1—C1—H1B | 109.5 | N51—C51—H51B | 109.5 |
N1—C1—H1C | 109.5 | N51—C51—H51C | 109.5 |
H1A—C1—H1B | 109.5 | H51A—C51—H51B | 109.5 |
H1A—C1—H1C | 109.5 | H51A—C51—H51C | 109.5 |
H1B—C1—H1C | 109.5 | H51B—C51—H51C | 109.5 |
O1—C2—N1 | 124.3 (2) | O51—C52—N51 | 124.3 (2) |
O1—C2—N2 | 118.0 (2) | O51—C52—N52 | 117.6 (2) |
N1—C2—N2 | 117.6 (2) | N51—C52—N52 | 118.2 (2) |
O2—C3—N2 | 123.5 (2) | O52—C53—N52 | 123.1 (2) |
O2—C3—C4 | 124.0 (2) | O52—C53—C54 | 121.3 (2) |
N2—C3—C4 | 112.5 (2) | N52—C53—C54 | 115.5 (2) |
C3—C4—H4 | 107.8 | C53—C54—H54 | 108.0 |
C3—C4—C5 | 111.1 (2) | C53—C54—C55 | 108.2 (2) |
C3—C4—C6 | 111.42 (19) | C53—C54—C56 | 108.62 (19) |
H4—C4—C5 | 107.8 | H54—C54—C55 | 108.0 |
H4—C4—C6 | 107.8 | H54—C54—C56 | 108.0 |
C5—C4—C6 | 110.75 (19) | C55—C54—C56 | 115.8 (2) |
C4—C5—H5A | 109.5 | C54—C55—H55A | 109.5 |
C4—C5—H5B | 109.5 | C54—C55—H55B | 109.5 |
C4—C5—H5C | 109.5 | C54—C55—H55C | 109.5 |
H5A—C5—H5B | 109.5 | H55A—C55—H55B | 109.5 |
H5A—C5—H5C | 109.5 | H55A—C55—H55C | 109.5 |
H5B—C5—H5C | 109.5 | H55B—C55—H55C | 109.5 |
C4—C6—C7 | 122.6 (2) | C54—C56—C57 | 123.1 (2) |
C4—C6—C11 | 115.3 (2) | C54—C56—C61 | 115.1 (2) |
C7—C6—C11 | 122.1 (2) | C57—C56—C61 | 121.9 (2) |
C6—C7—H7 | 118.0 | C56—C57—H57 | 117.9 |
C6—C7—C8 | 124.1 (2) | C56—C57—C58 | 124.3 (2) |
H7—C7—C8 | 118.0 | H57—C57—C58 | 117.9 |
C7—C8—H8A | 109.1 | C57—C58—H58A | 109.2 |
C7—C8—H8B | 109.1 | C57—C58—H58B | 109.2 |
C7—C8—C9 | 112.4 (2) | C57—C58—C59 | 112.2 (2) |
H8A—C8—H8B | 107.9 | H58A—C58—H58B | 107.9 |
H8A—C8—C9 | 109.1 | H58A—C58—C59 | 109.2 |
H8B—C8—C9 | 109.1 | H58B—C58—C59 | 109.2 |
C8—C9—H9A | 109.5 | C58—C59—H59A | 109.6 |
C8—C9—H9B | 109.5 | C58—C59—H59B | 109.6 |
C8—C9—C10 | 110.6 (2) | C58—C59—C60 | 110.1 (2) |
H9A—C9—H9B | 108.1 | H59A—C59—H59B | 108.2 |
H9A—C9—C10 | 109.5 | H59A—C59—C60 | 109.6 |
H9B—C9—C10 | 109.5 | H59B—C59—C60 | 109.6 |
C9—C10—H10A | 109.4 | C59—C60—H60A | 109.6 |
C9—C10—H10B | 109.4 | C59—C60—H60B | 109.6 |
C9—C10—C11 | 111.4 (2) | C59—C60—C61 | 110.3 (2) |
H10A—C10—H10B | 108.0 | H60A—C60—H60B | 108.1 |
H10A—C10—C11 | 109.4 | H60A—C60—C61 | 109.6 |
H10B—C10—C11 | 109.4 | H60B—C60—C61 | 109.6 |
C6—C11—C10 | 112.1 (2) | C56—C61—C60 | 112.9 (2) |
C6—C11—H11A | 109.2 | C56—C61—H61A | 109.0 |
C6—C11—H11B | 109.2 | C56—C61—H61B | 109.0 |
C10—C11—H11A | 109.2 | C60—C61—H61A | 109.0 |
C10—C11—H11B | 109.2 | C60—C61—H61B | 109.0 |
H11A—C11—H11B | 107.9 | H61A—C61—H61B | 107.8 |
| | | |
C1—N1—C2—O1 | −4.0 (4) | C51—N51—C52—O51 | 0.4 (4) |
C1—N1—C2—N2 | 176.2 (2) | C51—N51—C52—N52 | −179.6 (2) |
C3—N2—C2—O1 | 176.7 (2) | C53—N52—C52—O51 | −179.3 (2) |
C3—N2—C2—N1 | −3.5 (4) | C53—N52—C52—N51 | 0.7 (4) |
C2—N2—C3—O2 | −0.3 (4) | C52—N52—C53—O52 | 1.0 (4) |
C2—N2—C3—C4 | −179.8 (2) | C52—N52—C53—C54 | −177.7 (2) |
O2—C3—C4—C5 | −16.7 (3) | O52—C53—C54—C55 | −67.0 (3) |
O2—C3—C4—C6 | 107.3 (3) | O52—C53—C54—C56 | 59.4 (3) |
N2—C3—C4—C5 | 162.8 (2) | N52—C53—C54—C55 | 111.7 (2) |
N2—C3—C4—C6 | −73.2 (3) | N52—C53—C54—C56 | −121.9 (2) |
C3—C4—C6—C7 | −31.4 (3) | C53—C54—C56—C57 | −117.7 (3) |
C3—C4—C6—C11 | 151.3 (2) | C53—C54—C56—C61 | 62.0 (3) |
C5—C4—C6—C7 | 92.9 (3) | C55—C54—C56—C57 | 4.2 (3) |
C5—C4—C6—C11 | −84.4 (3) | C55—C54—C56—C61 | −176.1 (2) |
C4—C6—C7—C8 | −174.6 (2) | C54—C56—C57—C58 | 177.5 (2) |
C11—C6—C7—C8 | 2.6 (4) | C61—C56—C57—C58 | −2.2 (4) |
C6—C7—C8—C9 | 12.3 (4) | C56—C57—C58—C59 | −13.6 (4) |
C7—C8—C9—C10 | −43.4 (4) | C57—C58—C59—C60 | 44.9 (3) |
C8—C9—C10—C11 | 61.1 (3) | C58—C59—C60—C61 | −61.8 (3) |
C4—C6—C11—C10 | −168.6 (2) | C54—C56—C61—C60 | 166.0 (2) |
C7—C6—C11—C10 | 14.1 (3) | C57—C56—C61—C60 | −14.3 (3) |
C9—C10—C11—C6 | −45.6 (3) | C59—C60—C61—C56 | 45.8 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O2 | 0.84 (3) | 2.14 (3) | 2.732 (3) | 127 (3) |
N2—H2N···O51 | 0.98 (3) | 1.81 (3) | 2.781 (3) | 171 (2) |
N51—H51N···O52 | 0.90 (3) | 2.04 (3) | 2.692 (3) | 128 (2) |
N52—H52N···O1 | 0.89 (3) | 1.95 (3) | 2.837 (3) | 175 (2) |
N1—H1N···O52i | 0.84 (3) | 2.35 (3) | 3.032 (3) | 139 (3) |
N51—H51N···O2ii | 0.90 (3) | 2.38 (3) | 3.109 (3) | 138 (2) |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z. |
(II) 2-ethyl-5-methylhexanamide
top
Crystal data top
C9H19NO | F(000) = 704 |
Mr = 157.25 | Dx = 1.036 Mg m−3 |
Monoclinic, C2/c | Synchrotron radiation, λ = 0.6933 Å |
Hall symbol: -C 2yc | Cell parameters from 1361 reflections |
a = 22.839 (6) Å | θ = 3.5–28.5° |
b = 5.0394 (13) Å | µ = 0.07 mm−1 |
c = 18.802 (5) Å | T = 120 K |
β = 111.224 (4)° | Plate, colourless |
V = 2017.2 (9) Å3 | 0.20 × 0.10 × 0.05 mm |
Z = 8 | |
Data collection top
Bruker APEXII diffractometer | 1867 independent reflections |
Radiation source: Daresbury SRS station 9.8 | 1456 reflections with I > 2σ(I) |
Silicon 111 monochromator | Rint = 0.042 |
thin–slice ω scans | θmax = 25.0°, θmin = 3.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −27→27 |
Tmin = 0.987, Tmax = 0.997 | k = −6→6 |
5147 measured reflections | l = −19→22 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.159 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0931P)2 + 0.6424P] where P = (Fo2 + 2Fc2)/3 |
1867 reflections | (Δ/σ)max < 0.001 |
103 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
Crystal data top
C9H19NO | V = 2017.2 (9) Å3 |
Mr = 157.25 | Z = 8 |
Monoclinic, C2/c | Synchrotron radiation, λ = 0.6933 Å |
a = 22.839 (6) Å | µ = 0.07 mm−1 |
b = 5.0394 (13) Å | T = 120 K |
c = 18.802 (5) Å | 0.20 × 0.10 × 0.05 mm |
β = 111.224 (4)° | |
Data collection top
Bruker APEXII diffractometer | 1867 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1456 reflections with I > 2σ(I) |
Tmin = 0.987, Tmax = 0.997 | Rint = 0.042 |
5147 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.159 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.35 e Å−3 |
1867 reflections | Δρmin = −0.18 e Å−3 |
103 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.18171 (5) | 0.5661 (2) | 0.00968 (7) | 0.0300 (4) | |
N1 | 0.19735 (6) | 1.0049 (3) | 0.01119 (8) | 0.0280 (4) | |
H1N | 0.2335 | 0.9849 | 0.0051 | 0.042* | |
H2N | 0.1834 | 1.1651 | 0.0150 | 0.042* | |
C1 | 0.20224 (10) | 0.8750 (6) | 0.31219 (13) | 0.0592 (7) | |
H1A | 0.2424 | 0.8900 | 0.3047 | 0.089* | |
H1B | 0.2086 | 0.7799 | 0.3599 | 0.089* | |
H1C | 0.1858 | 1.0528 | 0.3148 | 0.089* | |
C2 | 0.09442 (11) | 0.6835 (5) | 0.25804 (13) | 0.0540 (6) | |
H2A | 0.0737 | 0.8554 | 0.2555 | 0.081* | |
H2B | 0.1028 | 0.6034 | 0.3082 | 0.081* | |
H2C | 0.0671 | 0.5660 | 0.2183 | 0.081* | |
C3 | 0.15567 (9) | 0.7234 (4) | 0.24582 (12) | 0.0433 (5) | |
H3 | 0.1739 | 0.5437 | 0.2448 | 0.052* | |
C4 | 0.14781 (8) | 0.8585 (4) | 0.17060 (11) | 0.0351 (5) | |
H4A | 0.1326 | 1.0417 | 0.1721 | 0.042* | |
H4B | 0.1896 | 0.8712 | 0.1661 | 0.042* | |
C5 | 0.10312 (8) | 0.7221 (3) | 0.09961 (10) | 0.0317 (4) | |
H5A | 0.1153 | 0.5333 | 0.1008 | 0.038* | |
H5B | 0.0602 | 0.7282 | 0.1009 | 0.038* | |
C6 | 0.10179 (7) | 0.8441 (3) | 0.02515 (9) | 0.0259 (4) | |
H6 | 0.0959 | 1.0400 | 0.0276 | 0.031* | |
C7 | 0.04833 (8) | 0.7350 (4) | −0.04421 (11) | 0.0343 (5) | |
H7A | 0.0541 | 0.5412 | −0.0472 | 0.041* | |
H7B | 0.0081 | 0.7643 | −0.0368 | 0.041* | |
C8 | 0.04428 (9) | 0.8596 (4) | −0.11890 (11) | 0.0407 (5) | |
H8A | 0.0384 | 1.0516 | −0.1166 | 0.061* | |
H8B | 0.0086 | 0.7837 | −0.1605 | 0.061* | |
H8C | 0.0832 | 0.8242 | −0.1281 | 0.061* | |
C9 | 0.16398 (7) | 0.7946 (3) | 0.01469 (9) | 0.0237 (4) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0273 (6) | 0.0208 (6) | 0.0486 (8) | −0.0005 (4) | 0.0217 (5) | −0.0003 (5) |
N1 | 0.0257 (7) | 0.0198 (7) | 0.0454 (9) | 0.0022 (5) | 0.0212 (6) | −0.0002 (6) |
C1 | 0.0441 (12) | 0.0943 (18) | 0.0369 (12) | −0.0056 (12) | 0.0118 (9) | 0.0064 (12) |
C2 | 0.0571 (13) | 0.0699 (15) | 0.0424 (12) | −0.0130 (11) | 0.0270 (10) | 0.0006 (10) |
C3 | 0.0436 (11) | 0.0523 (12) | 0.0377 (11) | 0.0015 (9) | 0.0193 (9) | 0.0058 (9) |
C4 | 0.0332 (9) | 0.0402 (10) | 0.0363 (11) | −0.0016 (7) | 0.0179 (8) | 0.0018 (8) |
C5 | 0.0276 (8) | 0.0354 (10) | 0.0378 (10) | −0.0019 (7) | 0.0186 (7) | 0.0005 (7) |
C6 | 0.0225 (8) | 0.0255 (9) | 0.0334 (10) | 0.0006 (6) | 0.0144 (7) | −0.0014 (7) |
C7 | 0.0238 (8) | 0.0396 (10) | 0.0408 (11) | −0.0014 (7) | 0.0134 (7) | −0.0033 (8) |
C8 | 0.0331 (9) | 0.0507 (12) | 0.0364 (11) | 0.0010 (8) | 0.0105 (8) | −0.0021 (8) |
C9 | 0.0232 (8) | 0.0225 (8) | 0.0278 (9) | 0.0013 (6) | 0.0122 (6) | −0.0005 (6) |
Geometric parameters (Å, º) top
O1—C9 | 1.2354 (19) | C4—H4A | 0.990 |
N1—C9 | 1.321 (2) | C4—H4B | 0.990 |
N1—H1N | 0.880 | C5—C6 | 1.519 (2) |
N1—H2N | 0.880 | C5—H5A | 0.990 |
C1—C3 | 1.520 (3) | C5—H5B | 0.990 |
C1—H1A | 0.980 | C6—C9 | 1.523 (2) |
C1—H1B | 0.980 | C6—C7 | 1.530 (2) |
C1—H1C | 0.980 | C6—H6 | 1.000 |
C2—C3 | 1.511 (3) | C7—C8 | 1.510 (3) |
C2—H2A | 0.980 | C7—H7A | 0.990 |
C2—H2B | 0.980 | C7—H7B | 0.990 |
C2—H2C | 0.980 | C8—H8A | 0.980 |
C3—C4 | 1.521 (3) | C8—H8B | 0.980 |
C3—H3 | 1.000 | C8—H8C | 0.980 |
C4—C5 | 1.520 (3) | | |
| | | |
C9—N1—H1N | 120.0 | C6—C5—C4 | 114.18 (14) |
C9—N1—H2N | 120.0 | C6—C5—H5A | 108.7 |
H1N—N1—H2N | 120.0 | C4—C5—H5A | 108.7 |
C3—C1—H1A | 109.5 | C6—C5—H5B | 108.7 |
C3—C1—H1B | 109.5 | C4—C5—H5B | 108.7 |
H1A—C1—H1B | 109.5 | H5A—C5—H5B | 107.6 |
C3—C1—H1C | 109.5 | C5—C6—C9 | 110.14 (13) |
H1A—C1—H1C | 109.5 | C5—C6—C7 | 112.57 (14) |
H1B—C1—H1C | 109.5 | C9—C6—C7 | 108.96 (13) |
C3—C2—H2A | 109.5 | C5—C6—H6 | 108.4 |
C3—C2—H2B | 109.5 | C9—C6—H6 | 108.4 |
H2A—C2—H2B | 109.5 | C7—C6—H6 | 108.4 |
C3—C2—H2C | 109.5 | C8—C7—C6 | 113.87 (15) |
H2A—C2—H2C | 109.5 | C8—C7—H7A | 108.8 |
H2B—C2—H2C | 109.5 | C6—C7—H7A | 108.8 |
C2—C3—C1 | 110.67 (18) | C8—C7—H7B | 108.8 |
C2—C3—C4 | 113.39 (17) | C6—C7—H7B | 108.8 |
C1—C3—C4 | 110.51 (17) | H7A—C7—H7B | 107.7 |
C2—C3—H3 | 107.3 | C7—C8—H8A | 109.5 |
C1—C3—H3 | 107.3 | C7—C8—H8B | 109.5 |
C4—C3—H3 | 107.3 | H8A—C8—H8B | 109.5 |
C5—C4—C3 | 115.47 (16) | C7—C8—H8C | 109.5 |
C5—C4—H4A | 108.4 | H8A—C8—H8C | 109.5 |
C3—C4—H4A | 108.4 | H8B—C8—H8C | 109.5 |
C5—C4—H4B | 108.4 | O1—C9—N1 | 122.22 (14) |
C3—C4—H4B | 108.4 | O1—C9—C6 | 120.61 (14) |
H4A—C4—H4B | 107.5 | N1—C9—C6 | 117.17 (13) |
| | | |
C2—C3—C4—C5 | −56.1 (2) | C9—C6—C7—C8 | −59.62 (19) |
C1—C3—C4—C5 | 178.95 (17) | C5—C6—C9—O1 | 62.0 (2) |
C3—C4—C5—C6 | −173.54 (14) | C7—C6—C9—O1 | −62.0 (2) |
C4—C5—C6—C9 | 68.43 (18) | C5—C6—C9—N1 | −118.13 (16) |
C4—C5—C6—C7 | −169.75 (14) | C7—C6—C9—N1 | 117.94 (16) |
C5—C6—C7—C8 | 177.90 (14) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.88 | 2.07 | 2.9488 (18) | 179 |
N1—H2N···O1ii | 0.88 | 2.02 | 2.8492 (18) | 156 |
Symmetry codes: (i) −x+1/2, −y+3/2, −z; (ii) x, y+1, z. |
(III) 2-ethylpentanamide
top
Crystal data top
C8H17NO | F(000) = 640 |
Mr = 143.23 | Dx = 1.019 Mg m−3 |
Monoclinic, P21/c | Synchrotron radiation, λ = 0.69330 Å |
Hall symbol: -P 2ybc | Cell parameters from 2394 reflections |
a = 21.597 (5) Å | θ = 2.8–25.5° |
b = 5.0469 (12) Å | µ = 0.04 mm−1 |
c = 18.424 (5) Å | T = 120 K |
β = 111.529 (3)° | Plate, colourless |
V = 1868.0 (8) Å3 | 0.20 × 0.10 × 0.05 mm |
Z = 8 | |
Data collection top
Bruker APEXII diffractometer | 3250 independent reflections |
Radiation source: Daresbury SRS station 9.8 | 2184 reflections with I > 2σ(I) |
Silicon 111 monochromator | Rint = 0.052 |
thin–slice ω scans | θmax = 24.4°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −25→25 |
Tmin = 0.992, Tmax = 0.998 | k = −5→6 |
12823 measured reflections | l = −21→21 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0678P)2 + 0.3705P] where P = (Fo2 + 2Fc2)/3 |
3250 reflections | (Δ/σ)max = 0.003 |
274 parameters | Δρmax = 0.17 e Å−3 |
19 restraints | Δρmin = −0.13 e Å−3 |
Crystal data top
C8H17NO | V = 1868.0 (8) Å3 |
Mr = 143.23 | Z = 8 |
Monoclinic, P21/c | Synchrotron radiation, λ = 0.69330 Å |
a = 21.597 (5) Å | µ = 0.04 mm−1 |
b = 5.0469 (12) Å | T = 120 K |
c = 18.424 (5) Å | 0.20 × 0.10 × 0.05 mm |
β = 111.529 (3)° | |
Data collection top
Bruker APEXII diffractometer | 3250 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2184 reflections with I > 2σ(I) |
Tmin = 0.992, Tmax = 0.998 | Rint = 0.052 |
12823 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.049 | 19 restraints |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.17 e Å−3 |
3250 reflections | Δρmin = −0.13 e Å−3 |
274 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
O1 | 0.1649 (4) | 0.4381 (19) | 0.4511 (5) | 0.0407 (14) | 0.559 (8) |
N1 | 0.1914 (8) | 0.8732 (17) | 0.4601 (7) | 0.041 (2) | 0.559 (8) |
H1N | 0.2302 | 0.8367 | 0.4966 | 0.061* | 0.559 (8) |
H2N | 0.1810 | 1.0380 | 0.4450 | 0.061* | 0.559 (8) |
C1 | 0.1979 (3) | 0.6082 (18) | 0.1629 (3) | 0.088 (2) | 0.559 (8) |
H1A | 0.1927 | 0.5229 | 0.1132 | 0.132* | 0.559 (8) |
H1B | 0.2392 | 0.5469 | 0.2034 | 0.132* | 0.559 (8) |
H1C | 0.1997 | 0.8009 | 0.1573 | 0.132* | 0.559 (8) |
C2 | 0.1392 (2) | 0.5369 (13) | 0.1857 (2) | 0.0670 (18) | 0.559 (8) |
H2A | 0.0976 | 0.5954 | 0.1438 | 0.080* | 0.559 (8) |
H2B | 0.1371 | 0.3418 | 0.1899 | 0.080* | 0.559 (8) |
C3 | 0.1427 (3) | 0.6599 (13) | 0.2618 (3) | 0.0469 (14) | 0.559 (8) |
H3A | 0.1856 | 0.6111 | 0.3031 | 0.056* | 0.559 (8) |
H3B | 0.1416 | 0.8552 | 0.2564 | 0.056* | 0.559 (8) |
C4 | 0.0865 (3) | 0.5733 (12) | 0.2863 (4) | 0.0394 (14) | 0.559 (8) |
H4A | 0.0908 | 0.3805 | 0.2970 | 0.047* | 0.559 (8) |
H4B | 0.0440 | 0.6022 | 0.2421 | 0.047* | 0.559 (8) |
C5 | 0.0828 (4) | 0.712 (3) | 0.3570 (6) | 0.0328 (17) | 0.559 (8) |
H5 | 0.0780 | 0.9061 | 0.3455 | 0.039* | 0.559 (8) |
C6 | 0.0261 (4) | 0.6273 (17) | 0.3811 (5) | 0.050 (2) | 0.559 (8) |
H6A | −0.0159 | 0.6422 | 0.3352 | 0.060* | 0.559 (8) |
H6B | 0.0322 | 0.4381 | 0.3962 | 0.060* | 0.559 (8) |
C7 | 0.0186 (6) | 0.7826 (17) | 0.4475 (6) | 0.072 (2) | 0.559 (8) |
H7A | −0.0202 | 0.7169 | 0.4578 | 0.108* | 0.559 (8) |
H7B | 0.0123 | 0.9706 | 0.4335 | 0.108* | 0.559 (8) |
H7C | 0.0587 | 0.7609 | 0.4944 | 0.108* | 0.559 (8) |
C8 | 0.1465 (5) | 0.670 (2) | 0.4264 (7) | 0.033 (2) | 0.559 (8) |
O1' | 0.1798 (5) | 0.436 (2) | 0.4351 (7) | 0.0428 (19) | 0.441 (8) |
N1' | 0.1826 (10) | 0.879 (3) | 0.4548 (11) | 0.057 (5) | 0.441 (8) |
H1N' | 0.2149 | 0.8741 | 0.5010 | 0.086* | 0.441 (8) |
H2N' | 0.1648 | 1.0312 | 0.4346 | 0.086* | 0.441 (8) |
C1' | 0.1773 (4) | 0.4144 (19) | 0.1617 (4) | 0.092 (3) | 0.441 (8) |
H1'1 | 0.1791 | 0.3898 | 0.1097 | 0.138* | 0.441 (8) |
H1'2 | 0.1431 | 0.2978 | 0.1675 | 0.138* | 0.441 (8) |
H1'3 | 0.2206 | 0.3706 | 0.2015 | 0.138* | 0.441 (8) |
C2' | 0.1605 (4) | 0.6961 (15) | 0.1712 (4) | 0.075 (2) | 0.441 (8) |
H2'1 | 0.1159 | 0.7372 | 0.1319 | 0.090* | 0.441 (8) |
H2'2 | 0.1931 | 0.8135 | 0.1610 | 0.090* | 0.441 (8) |
C3' | 0.1605 (5) | 0.7539 (17) | 0.2521 (5) | 0.063 (2) | 0.441 (8) |
H3'1 | 0.2039 | 0.6982 | 0.2911 | 0.075* | 0.441 (8) |
H3'2 | 0.1567 | 0.9478 | 0.2574 | 0.075* | 0.441 (8) |
C4' | 0.1066 (5) | 0.6222 (18) | 0.2711 (5) | 0.047 (2) | 0.441 (8) |
H4'1 | 0.1155 | 0.4293 | 0.2758 | 0.057* | 0.441 (8) |
H4'2 | 0.0640 | 0.6493 | 0.2269 | 0.057* | 0.441 (8) |
C5' | 0.0985 (6) | 0.719 (4) | 0.3461 (8) | 0.041 (3) | 0.441 (8) |
H5' | 0.0916 | 0.9153 | 0.3422 | 0.050* | 0.441 (8) |
C6' | 0.0379 (6) | 0.591 (3) | 0.3566 (6) | 0.050 (2) | 0.441 (8) |
H6'1 | 0.0453 | 0.3970 | 0.3628 | 0.060* | 0.441 (8) |
H6'2 | −0.0017 | 0.6202 | 0.3086 | 0.060* | 0.441 (8) |
C7' | 0.0235 (5) | 0.697 (2) | 0.4264 (7) | 0.067 (3) | 0.441 (8) |
H7'1 | −0.0140 | 0.5989 | 0.4314 | 0.100* | 0.441 (8) |
H7'2 | 0.0122 | 0.8852 | 0.4186 | 0.100* | 0.441 (8) |
H7'3 | 0.0629 | 0.6738 | 0.4740 | 0.100* | 0.441 (8) |
C8' | 0.1614 (6) | 0.661 (3) | 0.4166 (8) | 0.032 (2) | 0.441 (8) |
O51 | 0.31437 (6) | 0.6957 (2) | 0.08876 (7) | 0.0499 (4) | |
N51 | 0.29846 (7) | 1.1342 (3) | 0.07592 (8) | 0.0445 (4) | |
H51A | 0.2590 | 1.1141 | 0.0389 | 0.053* | |
H51B | 0.3140 | 1.2942 | 0.0912 | 0.053* | |
C51 | 0.32418 (15) | 1.0964 (5) | 0.39915 (15) | 0.0863 (8) | |
H51C | 0.3447 | 1.2722 | 0.4109 | 0.104* | |
H51D | 0.3250 | 1.0127 | 0.4475 | 0.104* | |
H51E | 0.2780 | 1.1140 | 0.3629 | 0.104* | |
C52 | 0.36203 (12) | 0.9288 (5) | 0.36277 (12) | 0.0668 (6) | |
H52A | 0.3438 | 0.7467 | 0.3562 | 0.080* | |
H52B | 0.4091 | 0.9196 | 0.3988 | 0.080* | |
C53 | 0.35979 (9) | 1.0293 (4) | 0.28423 (10) | 0.0481 (5) | |
H53A | 0.3130 | 1.0273 | 0.2472 | 0.058* | |
H53B | 0.3753 | 1.2154 | 0.2901 | 0.058* | |
C54 | 0.40150 (9) | 0.8699 (4) | 0.25014 (10) | 0.0465 (5) | |
H54A | 0.3850 | 0.6850 | 0.2431 | 0.056* | |
H54B | 0.4479 | 0.8669 | 0.2882 | 0.056* | |
C55 | 0.40199 (8) | 0.9711 (3) | 0.17209 (9) | 0.0401 (4) | |
H55 | 0.4109 | 1.1660 | 0.1766 | 0.048* | |
C56 | 0.45567 (9) | 0.8372 (4) | 0.14969 (11) | 0.0513 (5) | |
H56A | 0.4992 | 0.8646 | 0.1924 | 0.062* | |
H56B | 0.4469 | 0.6442 | 0.1452 | 0.062* | |
C57 | 0.46062 (11) | 0.9339 (5) | 0.07468 (12) | 0.0664 (6) | |
H57A | 0.4192 | 0.8935 | 0.0311 | 0.080* | |
H57B | 0.4979 | 0.8453 | 0.0664 | 0.080* | |
H57C | 0.4681 | 1.1258 | 0.0777 | 0.080* | |
C58 | 0.33428 (8) | 0.9246 (3) | 0.10850 (9) | 0.0379 (4) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.042 (3) | 0.0246 (16) | 0.044 (3) | 0.002 (2) | 0.0016 (17) | −0.0011 (17) |
N1 | 0.055 (5) | 0.010 (3) | 0.042 (5) | 0.000 (2) | 0.001 (4) | −0.004 (3) |
C1 | 0.075 (4) | 0.125 (7) | 0.067 (3) | −0.026 (4) | 0.030 (3) | −0.016 (3) |
C2 | 0.068 (3) | 0.080 (4) | 0.051 (2) | −0.011 (3) | 0.021 (2) | −0.007 (2) |
C3 | 0.047 (4) | 0.054 (4) | 0.039 (2) | −0.009 (3) | 0.014 (3) | 0.003 (2) |
C4 | 0.042 (3) | 0.027 (3) | 0.037 (3) | −0.004 (2) | 0.000 (2) | 0.000 (2) |
C5 | 0.026 (4) | 0.028 (2) | 0.036 (3) | −0.001 (3) | 0.001 (3) | 0.003 (2) |
C6 | 0.045 (3) | 0.052 (4) | 0.050 (6) | 0.007 (3) | 0.013 (4) | 0.010 (4) |
C7 | 0.092 (4) | 0.070 (5) | 0.065 (5) | 0.021 (4) | 0.041 (3) | 0.007 (4) |
C8 | 0.032 (4) | 0.023 (2) | 0.040 (3) | 0.008 (3) | 0.010 (3) | −0.001 (2) |
O1' | 0.038 (4) | 0.024 (2) | 0.050 (5) | 0.004 (3) | −0.002 (2) | 0.000 (3) |
N1' | 0.048 (5) | 0.046 (7) | 0.038 (5) | 0.003 (3) | −0.030 (3) | 0.007 (4) |
C1' | 0.085 (5) | 0.116 (7) | 0.082 (5) | 0.014 (5) | 0.039 (4) | −0.007 (5) |
C2' | 0.075 (5) | 0.070 (5) | 0.076 (4) | −0.003 (4) | 0.024 (4) | 0.013 (3) |
C3' | 0.074 (5) | 0.063 (5) | 0.055 (4) | −0.010 (4) | 0.030 (3) | 0.002 (4) |
C4' | 0.046 (6) | 0.048 (5) | 0.037 (4) | −0.007 (4) | 0.002 (4) | 0.005 (3) |
C5' | 0.026 (5) | 0.030 (3) | 0.061 (6) | 0.000 (4) | 0.007 (3) | 0.005 (4) |
C6' | 0.046 (5) | 0.050 (4) | 0.045 (5) | 0.005 (4) | 0.006 (3) | 0.005 (4) |
C7' | 0.065 (4) | 0.076 (8) | 0.069 (8) | 0.003 (5) | 0.036 (5) | −0.001 (5) |
C8' | 0.023 (4) | 0.031 (3) | 0.037 (4) | 0.006 (3) | 0.006 (3) | −0.005 (3) |
O51 | 0.0568 (8) | 0.0235 (7) | 0.0465 (7) | −0.0007 (5) | −0.0079 (6) | −0.0009 (5) |
N51 | 0.0482 (9) | 0.0240 (8) | 0.0418 (8) | −0.0023 (6) | −0.0068 (7) | −0.0013 (6) |
C51 | 0.117 (2) | 0.091 (2) | 0.0681 (16) | −0.0194 (16) | 0.0536 (16) | −0.0006 (14) |
C52 | 0.0857 (16) | 0.0651 (15) | 0.0509 (12) | −0.0127 (12) | 0.0265 (12) | 0.0058 (11) |
C53 | 0.0566 (11) | 0.0417 (11) | 0.0387 (10) | −0.0103 (9) | 0.0088 (9) | 0.0018 (8) |
C54 | 0.0496 (10) | 0.0394 (10) | 0.0366 (10) | −0.0057 (8) | −0.0007 (8) | 0.0050 (8) |
C55 | 0.0449 (10) | 0.0306 (9) | 0.0337 (9) | −0.0018 (7) | 0.0015 (7) | −0.0004 (7) |
C56 | 0.0489 (11) | 0.0480 (11) | 0.0474 (11) | 0.0013 (9) | 0.0061 (9) | −0.0015 (9) |
C57 | 0.0668 (14) | 0.0781 (16) | 0.0527 (13) | 0.0053 (12) | 0.0201 (11) | −0.0064 (11) |
C58 | 0.0469 (10) | 0.0271 (9) | 0.0312 (9) | −0.0008 (8) | 0.0045 (7) | −0.0005 (7) |
Geometric parameters (Å, º) top
O1—C8 | 1.268 (12) | C3'—C4' | 1.489 (8) |
N1—H1N | 0.880 | C4'—H4'1 | 0.990 |
N1—H2N | 0.880 | C4'—H4'2 | 0.990 |
N1—C8 | 1.390 (14) | C4'—C5' | 1.536 (14) |
C1—H1A | 0.980 | C5'—H5' | 1.00 |
C1—H1B | 0.980 | C5'—C6' | 1.536 (12) |
C1—H1C | 0.980 | C5'—C8' | 1.524 (16) |
C1—C2 | 1.519 (10) | C6'—H6'1 | 0.990 |
C2—H2A | 0.990 | C6'—H6'2 | 0.990 |
C2—H2B | 0.990 | C6'—C7' | 1.527 (9) |
C2—C3 | 1.510 (7) | C7'—H7'1 | 0.980 |
C3—H3A | 0.990 | C7'—H7'2 | 0.980 |
C3—H3B | 0.990 | C7'—H7'3 | 0.980 |
C3—C4 | 1.508 (6) | O51—C58 | 1.2399 (19) |
C4—H4A | 0.990 | N51—H51A | 0.880 |
C4—H4B | 0.990 | N51—H51B | 0.880 |
C4—C5 | 1.506 (13) | N51—C58 | 1.318 (2) |
C5—H5 | 1.00 | C51—H51C | 0.980 |
C5—C6 | 1.510 (10) | C51—H51D | 0.980 |
C5—C8 | 1.510 (12) | C51—H51E | 0.980 |
C6—H6A | 0.990 | C51—C52 | 1.495 (3) |
C6—H6B | 0.990 | C52—H52A | 0.990 |
C6—C7 | 1.512 (7) | C52—H52B | 0.990 |
C7—H7A | 0.980 | C52—C53 | 1.517 (3) |
C7—H7B | 0.980 | C53—H53A | 0.990 |
C7—H7C | 0.980 | C53—H53B | 0.990 |
O1'—C8' | 1.210 (15) | C53—C54 | 1.506 (3) |
N1'—H1N' | 0.880 | C54—H54A | 0.990 |
N1'—H2N' | 0.880 | C54—H54B | 0.990 |
N1'—C8' | 1.294 (16) | C54—C55 | 1.530 (2) |
C1'—H1'1 | 0.980 | C55—H55 | 1.00 |
C1'—H1'2 | 0.980 | C55—C56 | 1.524 (3) |
C1'—H1'3 | 0.980 | C55—C58 | 1.520 (2) |
C1'—C2' | 1.494 (12) | C56—H56A | 0.990 |
C2'—H2'1 | 0.990 | C56—H56B | 0.990 |
C2'—H2'2 | 0.990 | C56—C57 | 1.506 (3) |
C2'—C3' | 1.519 (10) | C57—H57A | 0.980 |
C3'—H3'1 | 0.990 | C57—H57B | 0.980 |
C3'—H3'2 | 0.990 | C57—H57C | 0.980 |
| | | |
H1N—N1—H2N | 120.0 | H3'1—C3'—H3'2 | 107.5 |
H1N—N1—C8 | 120.0 | H3'1—C3'—C4' | 108.5 |
H2N—N1—C8 | 120.0 | H3'2—C3'—C4' | 108.5 |
H1A—C1—H1B | 109.5 | C3'—C4'—H4'1 | 108.5 |
H1A—C1—H1C | 109.5 | C3'—C4'—H4'2 | 108.5 |
H1A—C1—C2 | 109.5 | C3'—C4'—C5' | 115.2 (8) |
H1B—C1—H1C | 109.5 | H4'1—C4'—H4'2 | 107.5 |
H1B—C1—C2 | 109.5 | H4'1—C4'—C5' | 108.5 |
H1C—C1—C2 | 109.5 | H4'2—C4'—C5' | 108.5 |
C1—C2—H2A | 108.9 | C4'—C5'—H5' | 108.4 |
C1—C2—H2B | 108.9 | C4'—C5'—C6' | 111.2 (11) |
C1—C2—C3 | 113.4 (5) | C4'—C5'—C8' | 110.2 (9) |
H2A—C2—H2B | 107.7 | H5'—C5'—C6' | 108.4 |
H2A—C2—C3 | 108.9 | H5'—C5'—C8' | 108.4 |
H2B—C2—C3 | 108.9 | C6'—C5'—C8' | 110.3 (11) |
C2—C3—H3A | 109.0 | C5'—C6'—H6'1 | 108.8 |
C2—C3—H3B | 109.0 | C5'—C6'—H6'2 | 108.8 |
C2—C3—C4 | 112.8 (5) | C5'—C6'—C7' | 113.9 (10) |
H3A—C3—H3B | 107.8 | H6'1—C6'—H6'2 | 107.7 |
H3A—C3—C4 | 109.0 | H6'1—C6'—C7' | 108.8 |
H3B—C3—C4 | 109.0 | H6'2—C6'—C7' | 108.8 |
C3—C4—H4A | 108.4 | C6'—C7'—H7'1 | 109.5 |
C3—C4—H4B | 108.4 | C6'—C7'—H7'2 | 109.5 |
C3—C4—C5 | 115.4 (6) | C6'—C7'—H7'3 | 109.5 |
H4A—C4—H4B | 107.5 | H7'1—C7'—H7'2 | 109.5 |
H4A—C4—C5 | 108.4 | H7'1—C7'—H7'3 | 109.5 |
H4B—C4—C5 | 108.4 | H7'2—C7'—H7'3 | 109.5 |
C4—C5—H5 | 107.9 | O1'—C8'—N1' | 129.0 (14) |
C4—C5—C6 | 115.4 (7) | O1'—C8'—C5' | 121.2 (14) |
C4—C5—C8 | 110.3 (8) | N1'—C8'—C5' | 109.1 (14) |
H5—C5—C6 | 107.9 | H51A—N51—H51B | 120.0 |
H5—C5—C8 | 107.9 | H51A—N51—C58 | 120.0 |
C6—C5—C8 | 107.3 (7) | H51B—N51—C58 | 120.0 |
C5—C6—H6A | 108.4 | C51—C52—H52A | 108.7 |
C5—C6—H6B | 108.4 | C51—C52—H52B | 108.7 |
C5—C6—C7 | 115.5 (8) | C51—C52—C53 | 114.0 (2) |
H6A—C6—H6B | 107.5 | H52A—C52—H52B | 107.6 |
H6A—C6—C7 | 108.4 | H52A—C52—C53 | 108.7 |
H6B—C6—C7 | 108.4 | H52B—C52—C53 | 108.7 |
C6—C7—H7A | 109.5 | C52—C53—H53A | 108.8 |
C6—C7—H7B | 109.5 | C52—C53—H53B | 108.8 |
C6—C7—H7C | 109.5 | C52—C53—C54 | 113.87 (17) |
H7A—C7—H7B | 109.5 | H53A—C53—H53B | 107.7 |
H7A—C7—H7C | 109.5 | H53A—C53—C54 | 108.8 |
H7B—C7—H7C | 109.5 | H53B—C53—C54 | 108.8 |
O1—C8—N1 | 116.5 (10) | C53—C54—H54A | 108.5 |
O1—C8—C5 | 120.0 (10) | C53—C54—H54B | 108.5 |
N1—C8—C5 | 123.1 (11) | C53—C54—C55 | 115.17 (15) |
H1N'—N1'—H2N' | 120.0 | H54A—C54—H54B | 107.5 |
H1N'—N1'—C8' | 120.0 | H54A—C54—C55 | 108.5 |
H2N'—N1'—C8' | 120.0 | H54B—C54—C55 | 108.5 |
H1'1—C1'—H1'2 | 109.5 | C54—C55—H55 | 108.5 |
H1'1—C1'—H1'3 | 109.5 | C54—C55—C56 | 112.02 (14) |
H1'1—C1'—C2' | 109.5 | C54—C55—C58 | 109.66 (14) |
H1'2—C1'—H1'3 | 109.5 | H55—C55—C56 | 108.5 |
H1'2—C1'—C2' | 109.5 | H55—C55—C58 | 108.5 |
H1'3—C1'—C2' | 109.5 | C56—C55—C58 | 109.59 (14) |
C1'—C2'—H2'1 | 109.1 | C55—C56—H56A | 108.5 |
C1'—C2'—H2'2 | 109.1 | C55—C56—H56B | 108.5 |
C1'—C2'—C3' | 112.6 (6) | C55—C56—C57 | 114.97 (16) |
H2'1—C2'—H2'2 | 107.8 | H56A—C56—H56B | 107.5 |
H2'1—C2'—C3' | 109.1 | H56A—C56—C57 | 108.5 |
H2'2—C2'—C3' | 109.1 | H56B—C56—C57 | 108.5 |
C2'—C3'—H3'1 | 108.5 | O51—C58—N51 | 122.14 (15) |
C2'—C3'—H3'2 | 108.5 | O51—C58—C55 | 120.14 (14) |
C2'—C3'—C4' | 115.2 (7) | N51—C58—C55 | 117.73 (14) |
| | | |
C1—C2—C3—C4 | −176.3 (6) | C8'—C5'—C6'—C7' | 62.4 (16) |
C2—C3—C4—C5 | −173.5 (7) | C4'—C5'—C8'—O1' | −63.4 (15) |
C3—C4—C5—C6 | 179.3 (8) | C4'—C5'—C8'—N1' | 125.3 (16) |
C3—C4—C5—C8 | −58.8 (11) | C6'—C5'—C8'—O1' | 59.8 (15) |
C4—C5—C6—C7 | −174.8 (8) | C6'—C5'—C8'—N1' | −111.5 (17) |
C8—C5—C6—C7 | 61.8 (12) | C51—C52—C53—C54 | 176.33 (19) |
C4—C5—C8—O1 | −60.4 (11) | C52—C53—C54—C55 | −178.22 (16) |
C4—C5—C8—N1 | 111.7 (12) | C53—C54—C55—C56 | 168.19 (15) |
C6—C5—C8—O1 | 66.1 (11) | C53—C54—C55—C58 | −69.91 (19) |
C6—C5—C8—N1 | −121.9 (11) | C54—C55—C56—C57 | −178.02 (16) |
C1'—C2'—C3'—C4' | −67.7 (11) | C58—C55—C56—C57 | 60.0 (2) |
C2'—C3'—C4'—C5' | −169.2 (9) | C54—C55—C58—O51 | −66.4 (2) |
C3'—C4'—C5'—C6' | 174.7 (10) | C54—C55—C58—N51 | 113.64 (18) |
C3'—C4'—C5'—C8' | −62.7 (15) | C56—C55—C58—O51 | 56.9 (2) |
C4'—C5'—C6'—C7' | −175.0 (10) | C56—C55—C58—N51 | −123.01 (18) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O51i | 0.88 | 1.99 | 2.858 (15) | 170 |
N1—H2N···O1ii | 0.88 | 2.06 | 2.901 (12) | 160 |
N1′—H1N′···O51i | 0.88 | 2.19 | 3.029 (19) | 159 |
N1′—H2N′···O1′ii | 0.88 | 2.07 | 2.834 (18) | 145 |
N51—H51A···O1′iii | 0.88 | 2.06 | 2.923 (12) | 166 |
N51—H51B···O51ii | 0.88 | 2.03 | 2.8539 (19) | 156 |
N51—H51A···O1iii | 0.88 | 2.10 | 2.980 (10) | 179 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, y+1, z; (iii) x, −y+3/2, z−1/2. |
Experimental details
| (I) | (II) | (III) |
Crystal data |
Chemical formula | C11H18N2O2 | C9H19NO | C8H17NO |
Mr | 210.27 | 157.25 | 143.23 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, C2/c | Monoclinic, P21/c |
Temperature (K) | 120 | 120 | 120 |
a, b, c (Å) | 10.108 (2), 21.824 (4), 10.393 (2) | 22.839 (6), 5.0394 (13), 18.802 (5) | 21.597 (5), 5.0469 (12), 18.424 (5) |
β (°) | 92.52 (3) | 111.224 (4) | 111.529 (3) |
V (Å3) | 2290.4 (8) | 2017.2 (9) | 1868.0 (8) |
Z | 8 | 8 | 8 |
Radiation type | Mo Kα | Synchrotron, λ = 0.6933 Å | Synchrotron, λ = 0.69330 Å |
µ (mm−1) | 0.09 | 0.07 | 0.04 |
Crystal size (mm) | 0.36 × 0.08 × 0.03 | 0.20 × 0.10 × 0.05 | 0.20 × 0.10 × 0.05 |
|
Data collection |
Diffractometer | Nonius KappaCCD diffractometer | Bruker APEXII diffractometer | Bruker APEXII diffractometer |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) | Multi-scan (SADABS; Sheldrick, 1996) | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.970, 0.998 | 0.987, 0.997 | 0.992, 0.998 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 37076, 4030, 3184 | 5147, 1867, 1456 | 12823, 3250, 2184 |
Rint | 0.110 | 0.042 | 0.052 |
(sin θ/λ)max (Å−1) | 0.595 | 0.610 | 0.595 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.058, 0.140, 1.09 | 0.054, 0.159, 1.06 | 0.049, 0.141, 1.02 |
No. of reflections | 4030 | 1867 | 3250 |
No. of parameters | 292 | 103 | 274 |
No. of restraints | 0 | 0 | 19 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.23 | 0.35, −0.18 | 0.17, −0.13 |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O2 | 0.84 (3) | 2.14 (3) | 2.732 (3) | 127 (3) |
N2—H2N···O51 | 0.98 (3) | 1.81 (3) | 2.781 (3) | 171 (2) |
N51—H51N···O52 | 0.90 (3) | 2.04 (3) | 2.692 (3) | 128 (2) |
N52—H52N···O1 | 0.89 (3) | 1.95 (3) | 2.837 (3) | 175 (2) |
N1—H1N···O52i | 0.84 (3) | 2.35 (3) | 3.032 (3) | 139 (3) |
N51—H51N···O2ii | 0.90 (3) | 2.38 (3) | 3.109 (3) | 138 (2) |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z. |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.88 | 2.07 | 2.9488 (18) | 179 |
N1—H2N···O1ii | 0.88 | 2.02 | 2.8492 (18) | 156 |
Symmetry codes: (i) −x+1/2, −y+3/2, −z; (ii) x, y+1, z. |
Hydrogen-bond geometry (Å, º) for (III) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O51i | 0.88 | 1.99 | 2.858 (15) | 170 |
N1—H2N···O1ii | 0.88 | 2.06 | 2.901 (12) | 160 |
N51—H51B···O51ii | 0.88 | 2.03 | 2.8539 (19) | 156 |
N51—H51A···O1iii | 0.88 | 2.10 | 2.980 (10) | 179 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, y+1, z; (iii) x, −y+3/2, z−1/2. |
Substituted barbiturates have for decades been used as sedatives in the treatment of anxiety disorders (Volwiler & Tabern, 1930; Schwartz et al., 2005). Their chemical and structural properties are much studied, polymorphism in particular (Zencirci et al., 2009; Gryl et al., 2008; Bernstein, 2002). Despite their widespread medical use and the extensive structural characterization of the drug molecules, charting the in vivo metabolic pathway and the subsequent identification of the resulting metabolites seems to have received much less attention, at least in terms of published material. A search of SciFinder Scholar in November 2010 for `barbiturate metabolism' returned just 50 hits. In 1961 Freifelder and co-workers charted the synthetic route of the ring opening and subsequent hydrolysis of 5,5-disubstituted barbiturates (Scheme); they had thus described a chemical model for the in vivo metabolism of barbiturates (Freifelder et al., 1961).
Our interest in barbiturate crystal packing has revealed phase transitions (Nichol & Clegg, 2005a,b), metal complexes (Nichol & Clegg, 2005c), hydrogen-bonding interactions in organic co-crystals (Nichol & Clegg, 2006, 2009) and now the products of barbiturate hydrolysis. To investigate how the hydrogen-bonding motifs vary among barbiturate metabolites, we synthesized and characterized by X-ray crystallography the decomposition products of three 5,5-disubstituted barbituric acids (hexobarbitone, amylobarbitone and butobarbitone; Scheme) according to the mechanism reported by Freifelder. In each case the crystals obtained were of good size and sufficient quality that one would reasonably expect standard laboratory X-ray equipment to be satisfactory for data collection. This turned out to be incorrect and much higher intensity radiation was necessary; data for one compound were collected using radiation from a rotating anode amplified by mirror optics (Coles & Hursthouse, 2004) at Southampton University via the EPSRC National X-ray Crystallography Service, and data for the other two compounds were collected at Station 9.8 of the SRS at Daresbury Laboratory.
The discussion below describes the hydrogen-bonding motifs in terms of graph-set notation (Bernstein et al., 1995). The most pertinent pattern in this study is the Rad(n) notation, where R = ring, a = number of acceptors, d = number of donors and n = total number of atoms in the ring. In addition there are motifs of type S (intramolecular hydrogen bonding).
The synthesis of compound (I), 1-(2-cyclohex-2-enylpropionyl)-3-methylurea, is slightly different from that of the other two compounds, (II) and (III). The presence of an N-methyl group means that hydrolysis (step 2 of the reaction) cannot proceed, so instead crystals of the product of the first decarboxylation are obtained. The molecular structure of (I) is presented in Fig. 1 and hydrogen-bonding details are given in Table 1. There are two crystallographically unique molecules in the asymmetric unit; the molecule composed of atoms O1 to C11 will henceforth be referred to as `molecule A' and the molecule composed of atoms O51 to C61 as `molecule B'. Discussion is focused on molecule A with results for molecule B given in square brackets. Within the molecule, the urea group is essentially planar, with an r.m.s. deviation of 0.022Å [0.016 Å]; the two molecules differ in the orientations of the cyclohex-2-enyl groups, as a result of free rotation about the C3—C4 [C53—C54] bond. Fig. 2 shows a least-squares overlay formed by fitting the the urea groups of molecule A (orange) and B (black) with an r.m.s. deviation of 0.04; the differences in the cyclohex-2-enyl orientations are clear. Both cyclohex-2-enyl rings adopt a half-chair conformation.
In the crystal structure, N—H···O hydrogen bonding links adjacent unique molecules to form a one-dimensional ribbon which propagates parallel with the a axis (Fig. 3). In addition to an S(6) interaction found in both molecules, two intermolecular hydrogen-bonding motifs are present: an R22(8) motif, common between amide groups, and a second R22(4) motif. This combination of ring motifs, to yield a one-dimensional ribbon, has also been observed in other urea derivatives (Hashizume et al., 2003; Chen et al., 2005). Bond angles around the carbonyl C atom deviate significantly from 120°; this is also consistent with other urea derivates with the same hydrogen-bonding pattern.
Compound (II), 2-ethyl-5-methylhexanoic acid amide, was synthesized from amylobarbitone; in amylobarbitone there is no N-methyl group and so hydrolysis can proceed to give the final acid amide product. As a result there are only one hydrogen-bond acceptor and two donor sites, which means that the range of potential motifs is much more limited than those possible in compound (I). The molecular structure of (II) is shown in Fig. 4, and molecular dimensions are unexceptional. Hydrogen-bonding details are given in Table 2. In the crystal structure, each carbonyl group acts as a bifurcated hydrogen-bond acceptor and both hydrogen atoms of each amine group act as hydrogen-bond donors; thus all potential hydrogen-bonding donors and acceptors are satisfied. Two different hydrogen-bonding motifs are present (Fig. 5): an R22(8) interaction is found as in (I), and an R42(8) motif links the dimers into an infinite tape which runs parallel to the b axis.
Compound (III), 2-ethylpentanamide, was synthesized from butobarbitone; as with amylobarbitone, butobarbitone contains no N-methyl group and consequently the product of hydrolysis, (III), is analogous to (II). The molecular structure of (III) is presented in Fig. 6 and hydrogen-bonding geometry is given in Table 3. The unit-cell parameters for (III) are also similar to those of (II). However, where (II) crystallizes in space group C2/c, (III) crystallizes in space group P21/c with two crystallographically independent molecules (`molecule A' formed by atoms O1 to C8; `molecule B' formed by atoms O51 to C58) in the asymmetric unit and overall Z = 8. There are no exact or approximate systematic absences in the data for (III) which would suggest a centred unit cell. Molecule A exhibits whole-molecule disorder; this was modelled over two sites and refined with occupancies of 0.559: 0.441 (8). Molecule B is fully ordered. Hydrogen-bonding patterns are the same as for (II) (Fig. 5) and the overall crystal packing is broadly similar.