research papers
The crystal structure of divainillin (systematic name: 6,6′-dihydroxy-5,5′-dimethoxy-[1,1′-biphenyl]-3,3′-dicarbaldehyde), C16H14O6, was determined from laboratory powder X-ray diffraction data using the software EXPO2013 (direct methods) and WinPSSP (direct-space approach). Divanillin molecules crystallize in the orthorhombic space group Pba2 (No. 32), with two molecules per unit cell (Z′ = ). Each divanillin molecule, with twofold symmetry, is linked through strong alcohol–aldehyde hydrogen bonds to four equivalent molecules, defining a three-dimensional hydrogen-bonding network, with rings made up of six divanillin units (a diamond-like arrangement). Each molecule is also connected through π–π interactions to a translation-equivalent molecule along c. Four consecutive molecules stacked along [001] belong to four different three-dimensional hydrogen-bonding networks defining a quadruple array of interpenetrating networks. This complex hydrogen-bonding array is proposed as an explanation for the aging process experienced by divanillin powders.
Keywords: divanillin; powder diffraction; dia (Ia) topology; interpenetrating hydrogen-bond network; power diffraction; DFT-D calculation; lignin model; computational chemistry.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229618016200/sk3715sup1.cif | |
Rietveld powder data file (CIF format) https://doi.org/10.1107/S2053229618016200/sk3715Isup2.rtv | |
Portable Document Format (PDF) file https://doi.org/10.1107/S2053229618016200/sk3715sup3.pdf | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229618016200/sk3715Isup4.cml |
CCDC reference: 1879238
Computing details top
Program(s) used to solve structure: direct methods; program(s) used to refine structure: GSAS.
6,6'-Dihydroxy-5,5'-dimethoxy-[1,1'-biphenyl]-3,3'-dicarbaldehyde top
Crystal data top
C16H14O6 | V = 674.79 (1) Å3 |
Mr = 302.28 | Z = 2 |
Orthorhombic, Pba2 | Dx = 1.488 Mg m−3 |
Hall symbol: P 2 -2ab | CuKα1, CuKα2 radiation, λ = 1.540598, 1.544426 Å |
a = 12.28767 (11) Å | T = 293 K |
b = 13.97200 (18) Å | light yellow |
c = 3.93043 (4) Å | flat_sheet, 20 × 0.5 mm |
Data collection top
Rigaku ULTIMA IV diffractometer | Data collection mode: reflection, θ-θ geometry |
Radiation source: sealed X-ray tube | Scan method: step |
Curved Ge crystal monochromator | 2θmin = 4.994°, 2θmax = 108.104°, 2θstep = 0.01° |
Specimen mounting: Glass sample holder with a 20x20x0.5 mm indentation for the sample |
Refinement top
Least-squares matrix: full | 116 parameters |
Rp = 0.035 | 56 restraints |
Rwp = 0.049 | H-atom parameters not defined? |
Rexp = 0.022 | (Δ/σ)max = 0.02 |
R(F2) = 0.05040 | Background function: GSAS Background function number 7 with 36 terms. Linear interpolation 1: 746.117 2: 636.840 3: 820.260 4: 1087.66 5: 1340.36 6: 1694.77 7: 1939.95 8: 1780.04 9: 1470.80 10: 1469.09 11: 1171.58 12: 1220.23 13: 1099.08 14: 1133.77 15: 1082.14 16: 1040.03 17: 920.035 18: 960.677 19: 942.495 20: 867.667 21: 833.747 22: 817.667 23: 803.239 24: 778.713 25: 734.737 26: 743.098 27: 717.039 28: 697.800 29: 637.240 30: 613.791 31: 574.878 32: 571.899 33: 544.400 34: 538.892 35: 514.075 36: 523.654 |
10312 data points | Preferred orientation correction: March-Dollase AXIS 1 Ratio= 0.77078 h= 1.000 k= 0.000 l= 0.000 Prefered orientation correction range: Min= 0.67671, Max= 2.18374 |
Profile function: CW Profile function number 3 with 19 terms pseudo-Voigt profile coefficients as parameterized in P. Thompson, D.E. Cox & J.B. Hastings (1987). J. Appl. Cryst.,20,79-83. Asymmetry correction of L.W. Finger, D.E. Cox & A. P. Jephcoat (1994). J. Appl. Cryst.,27,892-900. #1(GU) = 280.285 #2(GV) = -19.927 #3(GW) = 18.038 #4(GP) = 0.000 #5(LX) = 5.378 #6(LY) = 0.000 #7(S/L) = 0.0295 #8(H/L) = 0.0301 #9(trns) = 8.98 #10(shft)= 0.0000 #11(stec)= 0.00 #12(ptec)= 0.00 #13(sfec)= 0.00 #14(L11) = 0.026 #15(L22) = -0.035 #16(L33) = 2.037 #17(L12) = -0.015 #18(L13) = 0.214 #19(L23) = -0.135 Peak tails are ignored where the intensity is below 0.0010 times the peak Aniso. broadening axis 0.0 0.0 1.0 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.13485 (8) | 0.31375 (11) | 0.8931 (7) | 0.0784 (8)* | |
O2 | 0.20440 (9) | 0.64551 (12) | 0.2917 (7) | 0.0663 (8)* | |
O3 | 0.42399 (10) | 0.64420 (7) | 0.2402 (5) | 0.0707 (7)* | |
C1 | 0.27806 (12) | 0.41290 (11) | 0.6785 (6) | 0.0470 (13)* | |
C2 | 0.21080 (10) | 0.48780 (17) | 0.5520 (9) | 0.0493 (11)* | |
C3 | 0.26177 (13) | 0.56830 (16) | 0.4107 (11) | 0.0598 (13)* | |
C4 | 0.37574 (11) | 0.57070 (11) | 0.4036 (6) | 0.0607 (14)* | |
C5 | 0.44038 (11) | 0.49460 (17) | 0.5 | 0.0375 (12)* | |
C6 | 0.38971 (11) | 0.41765 (11) | 0.6453 (6) | 0.0532 (13)* | |
C7 | 0.23099 (9) | 0.32760 (9) | 0.8444 (6) | 0.0808 (14)* | |
C8 | 0.08772 (11) | 0.64343 (8) | 0.3383 (3) | 0.0567 (9)* | |
H2 | 0.13565 (13) | 0.4859 (6) | 0.579 (2) | 0.0592 (13)* | |
H3 | 0.4013 (4) | 0.70692 (13) | 0.2997 (15) | 0.0848 (9)* | |
H6 | 0.4332 (2) | 0.37013 (16) | 0.7397 (10) | 0.0638 (15)* | |
H7 | 0.2795 (2) | 0.27727 (16) | 0.9036 (16) | 0.0969 (16)* | |
H8A | 0.0593 (3) | 0.70318 (13) | 0.2656 (12) | 0.0681 (11)* | |
H8B | 0.0718 (4) | 0.6328 (5) | 0.5720 (4) | 0.0681 (11)* | |
H8C | 0.0553 (3) | 0.59394 (16) | 0.2069 (7) | 0.0681 (11)* |
Geometric parameters (Å, º) top
C3—C2 | 1.402 (4) | C7—C1 | 1.477 (2) |
C3—C4 | 1.401 (2) | C7—O1 | 1.2124 (16) |
C3—O2 | 1.371 (3) | C7—H7 | 0.951 (3) |
C2—C3 | 1.402 (4) | O1—C7 | 1.2124 (16) |
C2—C1 | 1.423 (3) | C8—O2 | 1.4456 (18) |
C2—H2 | 0.930 (2) | C8—H8A | 0.949 (3) |
C1—C2 | 1.423 (3) | C8—H8B | 0.951 (3) |
C1—C6 | 1.380 (2) | C8—H8C | 0.951 (3) |
C1—C7 | 1.477 (2) | H6—C6 | 0.929 (3) |
C6—C1 | 1.380 (2) | H2—C2 | 0.930 (2) |
C6—C5 | 1.367 (3) | H8A—C8 | 0.949 (3) |
C6—H6 | 0.929 (3) | H8A—H8B | 1.562 (6) |
C5—C6 | 1.367 (3) | H8A—H8C | 1.545 (3) |
C5—C5i | 1.473 (3) | H8B—C8 | 0.951 (3) |
C5—C4 | 1.380 (3) | H8B—H8A | 1.562 (6) |
C4—C3 | 1.401 (2) | H8B—H8C | 1.548 (4) |
C4—C5 | 1.380 (3) | H8C—C8 | 0.951 (3) |
C4—O3 | 1.349 (2) | H8C—H8A | 1.545 (3) |
O3—C4 | 1.349 (2) | H8C—H8B | 1.548 (4) |
O3—H3 | 0.949 (3) | H7—C7 | 0.951 (3) |
O2—C3 | 1.371 (3) | H3—O3 | 0.949 (3) |
O2—C8 | 1.4456 (18) | ||
C2—C3—C4 | 118.3 (2) | C3—C4—C5 | 123.45 (17) |
C2—C3—O2 | 122.46 (15) | C3—C4—O3 | 117.85 (18) |
C4—C3—O2 | 119.2 (2) | C5—C4—O3 | 117.67 (13) |
C3—C2—C1 | 117.96 (13) | C4—O3—H3 | 117.2 (3) |
C3—C2—H2 | 120.7 (5) | C3—O2—C8 | 116.80 (16) |
C1—C2—H2 | 121.1 (6) | C1—C7—O1 | 125.47 (15) |
C2—C1—C6 | 120.60 (16) | C1—C7—H7 | 117.4 (2) |
C2—C1—C7 | 121.35 (13) | O1—C7—H7 | 117.0 (2) |
C6—C1—C7 | 118.04 (14) | O2—C8—H8A | 108.0 (3) |
C1—C6—C5 | 122.01 (15) | O2—C8—H8B | 109.2 (4) |
C1—C6—H6 | 119.9 (2) | O2—C8—H8C | 111.2 (3) |
C5—C6—H6 | 117.9 (2) | H8A—C8—H8B | 110.6 (5) |
C6—C5—C5i | 122.2 (2) | H8A—C8—H8C | 108.8 (3) |
C6—C5—C4 | 117.29 (13) | H8B—C8—H8C | 109.0 (4) |
C5i—C5—C4 | 119.6 (2) |
Symmetry code: (i) −x+1, −y+1, z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O1ii | 0.949 (3) | 2.231 (5) | 2.828 (2) | 120.0 (5) |
Symmetry code: (ii) −x+1/2, y+1/2, z−1. |