Solvent-dependent outcomes are noted in co-crystallization experiments between DABCO and 4-nitrobenzoic acid with mono- and diprotonated forms of DABCO are isolated.
Supporting information
CCDC references: 1004283; 1004284
Key indicators
Structure: 1
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.002 Å
- R factor = 0.039
- wR factor = 0.099
- Data-to-parameter ratio = 14.3
Structure: 2
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.004 Å
- R factor = 0.074
- wR factor = 0.229
- Data-to-parameter ratio = 13.9
checkCIF/PLATON results
No syntax errors found
Datablock: 1
Alert level C
PLAT906_ALERT_3_C Large K value in the Analysis of Variance ...... 2.382 Check
PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 9 Why ?
PLAT913_ALERT_3_C Missing # of Very Strong Reflections in FCF .... 5 Note
Alert level G
PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 8 Note
PLAT005_ALERT_5_G No _iucr_refine_instructions_details in the CIF Please Do !
PLAT042_ALERT_1_G Calc. and Reported MoietyFormula Strings Differ Please Check
PLAT790_ALERT_4_G Centre of Gravity not Within Unit Cell: Resd. # 3 Note
H2 O
PLAT790_ALERT_4_G Centre of Gravity not Within Unit Cell: Resd. # 4 Note
H2 O
PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 7 Note
PLAT910_ALERT_3_G Missing # of FCF Reflections Below Th(Min) ..... 1 Why ?
PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 11 Note
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
3 ALERT level C = Check. Ensure it is not caused by an omission or oversight
8 ALERT level G = General information/check it is not something unexpected
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
5 ALERT type 3 Indicator that the structure quality may be low
3 ALERT type 4 Improvement, methodology, query or suggestion
1 ALERT type 5 Informative message, check
Datablock: 2
Alert level C
DIFMX01_ALERT_2_C The maximum difference density is > 0.1*ZMAX*0.75
_refine_diff_density_max given = 0.601
Test value = 0.600
DIFMX02_ALERT_1_C The maximum difference density is > 0.1*ZMAX*0.75
The relevant atom site should be identified.
PLAT906_ALERT_3_C Large K value in the Analysis of Variance ...... 5.811 Check
PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 9 Why ?
PLAT913_ALERT_3_C Missing # of Very Strong Reflections in FCF .... 1 Note
PLAT939_ALERT_3_C Large Value of Not (SHELXL) Weight Optimized S . 10.17
PLAT975_ALERT_2_C Check Calcd Residual Density 1.08A From O5 0.58 eA-3
PLAT975_ALERT_2_C Check Calcd Residual Density 0.87A From O2 0.52 eA-3
PLAT975_ALERT_2_C Check Calcd Residual Density 0.88A From O1 0.52 eA-3
PLAT975_ALERT_2_C Check Calcd Residual Density 0.84A From O4 0.52 eA-3
PLAT975_ALERT_2_C Check Calcd Residual Density 0.98A From O7 0.47 eA-3
Alert level G
PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 4 Note
PLAT005_ALERT_5_G No _iucr_refine_instructions_details in the CIF Please Do !
PLAT042_ALERT_1_G Calc. and Reported MoietyFormula Strings Differ Please Check
PLAT072_ALERT_2_G SHELXL First Parameter in WGHT Unusually Large. 0.12 Why ?
PLAT154_ALERT_1_G The su's on the Cell Angles are Equal .......... 0.00300 Degree
PLAT790_ALERT_4_G Centre of Gravity not Within Unit Cell: Resd. # 2 Note
C7 H4 N O4
PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 2 Note
PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 2 Note
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
11 ALERT level C = Check. Ensure it is not caused by an omission or oversight
8 ALERT level G = General information/check it is not something unexpected
3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
8 ALERT type 2 Indicator that the structure model may be wrong or deficient
5 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
1 ALERT type 5 Informative message, check
For both compounds, data collection: CrysAlis PRO (Agilent, 2013); cell refinement: CrysAlis PRO (Agilent, 2013); data reduction: CrysAlis PRO (Agilent, 2013); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
(1) 1,4-Diazabicyclo[2.2.2]octan-1-ium 4-nitrobenzoate dihydrate
top
Crystal data top
C6H13N2+·C7H4NO4−·2H2O | F(000) = 672 |
Mr = 315.33 | Dx = 1.399 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: -P 2ybc | Cell parameters from 7046 reflections |
a = 6.5982 (1) Å | θ = 3.9–76.3° |
b = 6.6074 (1) Å | µ = 0.94 mm−1 |
c = 34.4574 (6) Å | T = 100 K |
β = 94.809 (1)° | Prism, colourless |
V = 1496.95 (4) Å3 | 0.30 × 0.30 × 0.20 mm |
Z = 4 | |
Data collection top
Agilent SuperNova Dual diffractometer with an Atlas detector | 3072 independent reflections |
Radiation source: SuperNova (Cu) X-ray Source | 2949 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.015 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 75.0°, θmin = 5.2° |
ω scan | h = −8→8 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | k = −8→5 |
Tmin = 0.888, Tmax = 1.000 | l = −43→42 |
11203 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.099 | w = 1/[σ2(Fo2) + (0.0467P)2 + 0.8811P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
3072 reflections | Δρmax = 0.40 e Å−3 |
215 parameters | Δρmin = −0.30 e Å−3 |
7 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0076 (6) |
Special details top
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are
estimated using the full covariance matrix. The cell s.u.'s are taken into
account individually in the estimation of s.u.'s in distances, angles and
torsion angles; correlations between s.u.'s in cell parameters are only used
when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
2σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.63866 (13) | 0.34327 (15) | 0.59514 (3) | 0.0233 (2) | |
O2 | 0.94425 (14) | 0.33794 (16) | 0.62902 (3) | 0.0261 (2) | |
O3 | 1.11387 (14) | 0.20664 (15) | 0.42606 (3) | 0.0234 (2) | |
O4 | 1.40402 (14) | 0.17440 (16) | 0.45978 (3) | 0.0262 (2) | |
N1 | 1.21908 (16) | 0.20014 (15) | 0.45723 (3) | 0.0175 (2) | |
C1 | 0.82971 (19) | 0.32425 (18) | 0.59836 (4) | 0.0178 (3) | |
C2 | 0.93105 (18) | 0.28490 (18) | 0.56096 (3) | 0.0153 (2) | |
C3 | 1.13841 (18) | 0.24078 (18) | 0.56251 (3) | 0.0162 (3) | |
H3 | 1.2149 | 0.2318 | 0.5871 | 0.019* | |
C4 | 1.23420 (18) | 0.20989 (18) | 0.52871 (4) | 0.0163 (2) | |
H4 | 1.3751 | 0.1786 | 0.5297 | 0.020* | |
C5 | 1.11798 (18) | 0.22606 (17) | 0.49335 (3) | 0.0149 (2) | |
C6 | 0.91145 (18) | 0.26736 (17) | 0.49062 (3) | 0.0155 (2) | |
H6 | 0.8354 | 0.2752 | 0.4660 | 0.019* | |
C7 | 0.81863 (17) | 0.29702 (18) | 0.52492 (3) | 0.0156 (2) | |
H7 | 0.6772 | 0.3258 | 0.5238 | 0.019* | |
N2 | 0.48292 (15) | 0.59677 (17) | 0.64400 (3) | 0.0178 (2) | |
H2N | 0.535 (2) | 0.503 (2) | 0.6291 (4) | 0.021* | |
N3 | 0.33337 (16) | 0.86385 (17) | 0.68589 (3) | 0.0207 (2) | |
C8 | 0.31552 (19) | 0.7058 (2) | 0.62050 (4) | 0.0213 (3) | |
H8A | 0.2168 | 0.6074 | 0.6082 | 0.026* | |
H8B | 0.3720 | 0.7863 | 0.5997 | 0.026* | |
C9 | 0.2099 (2) | 0.8456 (2) | 0.64826 (4) | 0.0309 (3) | |
H9A | 0.1903 | 0.9811 | 0.6363 | 0.037* | |
H9B | 0.0744 | 0.7900 | 0.6527 | 0.037* | |
C10 | 0.64491 (19) | 0.7447 (2) | 0.65768 (4) | 0.0212 (3) | |
H10A | 0.7121 | 0.7988 | 0.6352 | 0.025* | |
H10B | 0.7491 | 0.6777 | 0.6756 | 0.025* | |
C11 | 0.5423 (2) | 0.9174 (2) | 0.67881 (5) | 0.0325 (3) | |
H11A | 0.6212 | 0.9456 | 0.7039 | 0.039* | |
H11B | 0.5416 | 1.0418 | 0.6628 | 0.039* | |
C12 | 0.39871 (18) | 0.49677 (19) | 0.67830 (4) | 0.0199 (3) | |
H12A | 0.5038 | 0.4108 | 0.6923 | 0.024* | |
H12B | 0.2810 | 0.4105 | 0.6695 | 0.024* | |
C13 | 0.3323 (2) | 0.6654 (2) | 0.70520 (4) | 0.0257 (3) | |
H13A | 0.1938 | 0.6361 | 0.7127 | 0.031* | |
H13B | 0.4257 | 0.6688 | 0.7292 | 0.031* | |
O1W | 0.19593 (16) | 1.12932 (16) | 0.74123 (3) | 0.0268 (2) | |
H1W | 0.243 (3) | 1.058 (3) | 0.7232 (4) | 0.040* | |
H2W | 0.151 (3) | 1.039 (2) | 0.7565 (4) | 0.040* | |
O2W | −0.12706 (15) | 1.33213 (17) | 0.70557 (3) | 0.0289 (2) | |
H3W | −0.026 (2) | 1.268 (3) | 0.7167 (5) | 0.043* | |
H4W | −0.117 (3) | 1.328 (3) | 0.6810 (3) | 0.043* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0175 (4) | 0.0299 (5) | 0.0231 (5) | 0.0006 (4) | 0.0055 (3) | −0.0078 (4) |
O2 | 0.0235 (5) | 0.0391 (6) | 0.0158 (4) | 0.0014 (4) | 0.0025 (4) | −0.0027 (4) |
O3 | 0.0271 (5) | 0.0281 (5) | 0.0153 (4) | 0.0000 (4) | 0.0033 (4) | 0.0001 (4) |
O4 | 0.0181 (5) | 0.0355 (6) | 0.0262 (5) | 0.0027 (4) | 0.0087 (4) | 0.0009 (4) |
N1 | 0.0200 (5) | 0.0147 (5) | 0.0185 (5) | −0.0011 (4) | 0.0058 (4) | 0.0004 (4) |
C1 | 0.0190 (6) | 0.0167 (6) | 0.0181 (6) | −0.0009 (5) | 0.0042 (5) | −0.0018 (5) |
C2 | 0.0170 (6) | 0.0122 (5) | 0.0171 (6) | −0.0017 (4) | 0.0034 (4) | −0.0006 (4) |
C3 | 0.0165 (6) | 0.0154 (6) | 0.0165 (6) | −0.0012 (4) | −0.0004 (4) | 0.0003 (4) |
C4 | 0.0137 (5) | 0.0144 (5) | 0.0209 (6) | −0.0006 (4) | 0.0026 (4) | 0.0007 (4) |
C5 | 0.0178 (6) | 0.0116 (5) | 0.0159 (6) | −0.0020 (4) | 0.0053 (4) | −0.0006 (4) |
C6 | 0.0174 (6) | 0.0124 (5) | 0.0164 (5) | −0.0022 (4) | −0.0002 (4) | 0.0002 (4) |
C7 | 0.0135 (5) | 0.0133 (5) | 0.0200 (6) | −0.0016 (4) | 0.0021 (4) | −0.0005 (4) |
N2 | 0.0148 (5) | 0.0219 (5) | 0.0171 (5) | 0.0002 (4) | 0.0033 (4) | −0.0034 (4) |
N3 | 0.0212 (5) | 0.0228 (6) | 0.0187 (5) | 0.0016 (4) | 0.0044 (4) | −0.0023 (4) |
C8 | 0.0200 (6) | 0.0270 (7) | 0.0167 (6) | 0.0018 (5) | 0.0005 (5) | −0.0011 (5) |
C9 | 0.0331 (7) | 0.0375 (8) | 0.0217 (7) | 0.0148 (6) | −0.0002 (6) | −0.0017 (6) |
C10 | 0.0153 (6) | 0.0274 (7) | 0.0215 (6) | −0.0047 (5) | 0.0041 (5) | −0.0018 (5) |
C11 | 0.0276 (7) | 0.0300 (7) | 0.0416 (8) | −0.0100 (6) | 0.0126 (6) | −0.0138 (7) |
C12 | 0.0174 (6) | 0.0207 (6) | 0.0219 (6) | −0.0009 (5) | 0.0039 (5) | 0.0027 (5) |
C13 | 0.0299 (7) | 0.0274 (7) | 0.0210 (6) | 0.0011 (5) | 0.0104 (5) | 0.0017 (5) |
O1W | 0.0311 (5) | 0.0285 (5) | 0.0210 (5) | 0.0053 (4) | 0.0026 (4) | −0.0024 (4) |
O2W | 0.0258 (5) | 0.0420 (6) | 0.0191 (5) | 0.0084 (4) | 0.0041 (4) | 0.0005 (4) |
Geometric parameters (Å, º) top
O1—C1 | 1.2625 (15) | N3—C13 | 1.4706 (17) |
O2—C1 | 1.2495 (16) | N3—C9 | 1.4773 (17) |
O3—N1 | 1.2298 (14) | C8—C9 | 1.5381 (18) |
O4—N1 | 1.2279 (14) | C8—H8A | 0.9900 |
N1—C5 | 1.4704 (15) | C8—H8B | 0.9900 |
C1—C2 | 1.5231 (16) | C9—H9A | 0.9900 |
C2—C7 | 1.3943 (17) | C9—H9B | 0.9900 |
C2—C3 | 1.3956 (16) | C10—C11 | 1.5408 (19) |
C3—C4 | 1.3857 (17) | C10—H10A | 0.9900 |
C3—H3 | 0.9500 | C10—H10B | 0.9900 |
C4—C5 | 1.3884 (17) | C11—H11A | 0.9900 |
C4—H4 | 0.9500 | C11—H11B | 0.9900 |
C5—C6 | 1.3852 (17) | C12—C13 | 1.5365 (18) |
C6—C7 | 1.3900 (16) | C12—H12A | 0.9900 |
C6—H6 | 0.9500 | C12—H12B | 0.9900 |
C7—H7 | 0.9500 | C13—H13A | 0.9900 |
N2—C10 | 1.4951 (16) | C13—H13B | 0.9900 |
N2—C8 | 1.4982 (16) | O1W—H1W | 0.861 (9) |
N2—C12 | 1.5007 (15) | O1W—H2W | 0.866 (9) |
N2—H2N | 0.892 (9) | O2W—H3W | 0.852 (9) |
N3—C11 | 1.4635 (17) | O2W—H4W | 0.856 (9) |
| | | |
O4—N1—O3 | 123.50 (10) | N2—C8—H8B | 110.2 |
O4—N1—C5 | 118.32 (10) | C9—C8—H8B | 110.2 |
O3—N1—C5 | 118.18 (10) | H8A—C8—H8B | 108.5 |
O2—C1—O1 | 126.58 (11) | N3—C9—C8 | 110.47 (11) |
O2—C1—C2 | 116.76 (11) | N3—C9—H9A | 109.6 |
O1—C1—C2 | 116.65 (11) | C8—C9—H9A | 109.6 |
C7—C2—C3 | 119.51 (11) | N3—C9—H9B | 109.6 |
C7—C2—C1 | 120.35 (11) | C8—C9—H9B | 109.6 |
C3—C2—C1 | 120.13 (11) | H9A—C9—H9B | 108.1 |
C4—C3—C2 | 120.90 (11) | N2—C10—C11 | 107.60 (10) |
C4—C3—H3 | 119.6 | N2—C10—H10A | 110.2 |
C2—C3—H3 | 119.6 | C11—C10—H10A | 110.2 |
C3—C4—C5 | 117.96 (11) | N2—C10—H10B | 110.2 |
C3—C4—H4 | 121.0 | C11—C10—H10B | 110.2 |
C5—C4—H4 | 121.0 | H10A—C10—H10B | 108.5 |
C6—C5—C4 | 122.86 (11) | N3—C11—C10 | 110.91 (11) |
C6—C5—N1 | 118.62 (11) | N3—C11—H11A | 109.5 |
C4—C5—N1 | 118.52 (10) | C10—C11—H11A | 109.5 |
C5—C6—C7 | 118.10 (11) | N3—C11—H11B | 109.5 |
C5—C6—H6 | 120.9 | C10—C11—H11B | 109.5 |
C7—C6—H6 | 120.9 | H11A—C11—H11B | 108.0 |
C6—C7—C2 | 120.66 (11) | N2—C12—C13 | 107.39 (10) |
C6—C7—H7 | 119.7 | N2—C12—H12A | 110.2 |
C2—C7—H7 | 119.7 | C13—C12—H12A | 110.2 |
C10—N2—C8 | 109.35 (10) | N2—C12—H12B | 110.2 |
C10—N2—C12 | 109.99 (9) | C13—C12—H12B | 110.2 |
C8—N2—C12 | 109.42 (9) | H12A—C12—H12B | 108.5 |
C10—N2—H2N | 109.7 (10) | N3—C13—C12 | 111.17 (10) |
C8—N2—H2N | 109.0 (10) | N3—C13—H13A | 109.4 |
C12—N2—H2N | 109.4 (11) | C12—C13—H13A | 109.4 |
C11—N3—C13 | 109.35 (11) | N3—C13—H13B | 109.4 |
C11—N3—C9 | 109.36 (11) | C12—C13—H13B | 109.4 |
C13—N3—C9 | 107.53 (11) | H13A—C13—H13B | 108.0 |
N2—C8—C9 | 107.72 (10) | H1W—O1W—H2W | 103.0 (15) |
N2—C8—H8A | 110.2 | H3W—O2W—H4W | 107.8 (16) |
C9—C8—H8A | 110.2 | | |
| | | |
O2—C1—C2—C7 | −170.56 (11) | C1—C2—C7—C6 | 178.03 (11) |
O1—C1—C2—C7 | 8.23 (17) | C10—N2—C8—C9 | −67.76 (13) |
O2—C1—C2—C3 | 8.02 (17) | C12—N2—C8—C9 | 52.77 (14) |
O1—C1—C2—C3 | −173.19 (11) | C11—N3—C9—C8 | 50.98 (16) |
C7—C2—C3—C4 | 0.32 (18) | C13—N3—C9—C8 | −67.65 (14) |
C1—C2—C3—C4 | −178.27 (11) | N2—C8—C9—N3 | 13.17 (16) |
C2—C3—C4—C5 | 0.59 (18) | C8—N2—C10—C11 | 53.58 (13) |
C3—C4—C5—C6 | −1.34 (18) | C12—N2—C10—C11 | −66.60 (13) |
C3—C4—C5—N1 | 178.05 (10) | C13—N3—C11—C10 | 51.74 (15) |
O4—N1—C5—C6 | 176.15 (11) | C9—N3—C11—C10 | −65.75 (15) |
O3—N1—C5—C6 | −3.43 (16) | N2—C10—C11—N3 | 11.63 (16) |
O4—N1—C5—C4 | −3.27 (16) | C10—N2—C12—C13 | 53.46 (13) |
O3—N1—C5—C4 | 177.15 (10) | C8—N2—C12—C13 | −66.68 (13) |
C4—C5—C6—C7 | 1.12 (18) | C11—N3—C13—C12 | −65.51 (14) |
N1—C5—C6—C7 | −178.28 (10) | C9—N3—C13—C12 | 53.13 (14) |
C5—C6—C7—C2 | −0.14 (17) | N2—C12—C13—N3 | 11.20 (14) |
C3—C2—C7—C6 | −0.56 (18) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1 | 0.89 (1) | 1.76 (1) | 2.6431 (14) | 173 (1) |
O1W—H1W···N3 | 0.86 (2) | 1.95 (2) | 2.7974 (15) | 172 (2) |
O1W—H2W···O2Wi | 0.86 (2) | 1.91 (1) | 2.7500 (15) | 165 (2) |
O2W—H3W···O1W | 0.85 (2) | 1.87 (2) | 2.7218 (15) | 180 (2) |
O2W—H4W···O2ii | 0.86 (1) | 1.87 (1) | 2.7182 (15) | 171 (2) |
C10—H10A···O3iii | 0.99 | 2.49 | 3.4253 (17) | 158 |
C12—H12A···O2Wiv | 0.99 | 2.49 | 3.3711 (16) | 147 |
C12—H12B···O2v | 0.99 | 2.57 | 3.4818 (16) | 153 |
Symmetry codes: (i) −x, y−1/2, −z+3/2; (ii) x−1, y+1, z; (iii) −x+2, −y+1, −z+1; (iv) x+1, y−1, z; (v) x−1, y, z. |
(2) 1,4-Diazabicyclo[2.2.2]octane-1,4-diium bis(4-nitrobenzoate)
top
Crystal data top
C6H14N22+·2C7H4NO4− | Z = 2 |
Mr = 446.42 | F(000) = 468 |
Triclinic, P1 | Dx = 1.486 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54184 Å |
a = 9.1036 (4) Å | Cell parameters from 10186 reflections |
b = 9.5027 (3) Å | θ = 3.8–76.8° |
c = 12.0736 (3) Å | µ = 0.99 mm−1 |
α = 73.982 (3)° | T = 100 K |
β = 83.624 (3)° | Prism, colourless |
γ = 88.661 (3)° | 0.40 × 0.40 × 0.20 mm |
V = 997.68 (6) Å3 | |
Data collection top
Agilent SuperNova Dual diffractometer with an Atlas detector | 4101 independent reflections |
Radiation source: SuperNova (Cu) X-ray Source | 3775 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.046 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 75.0°, θmin = 3.8° |
ω scan | h = −11→11 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | k = −11→11 |
Tmin = 0.991, Tmax = 1.000 | l = −15→15 |
17849 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.074 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.229 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.1192P)2 + 1.3867P] where P = (Fo2 + 2Fc2)/3 |
4101 reflections | (Δ/σ)max < 0.001 |
295 parameters | Δρmax = 0.60 e Å−3 |
2 restraints | Δρmin = −0.58 e Å−3 |
Special details top
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are
estimated using the full covariance matrix. The cell s.u.'s are taken into
account individually in the estimation of s.u.'s in distances, angles and
torsion angles; correlations between s.u.'s in cell parameters are only used
when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
2σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.6213 (2) | 0.7377 (2) | 0.82692 (16) | 0.0320 (5) | |
O2 | 0.4577 (2) | 0.9073 (2) | 0.75460 (15) | 0.0301 (4) | |
O3 | 0.3598 (2) | 0.7520 (2) | 1.38056 (16) | 0.0365 (5) | |
O4 | 0.2049 (2) | 0.9218 (2) | 1.31087 (17) | 0.0343 (5) | |
N1 | 0.3033 (3) | 0.8347 (2) | 1.29939 (18) | 0.0278 (5) | |
C1 | 0.5159 (3) | 0.8269 (3) | 0.8358 (2) | 0.0230 (5) | |
C2 | 0.4601 (3) | 0.8288 (3) | 0.9588 (2) | 0.0225 (5) | |
C3 | 0.3361 (3) | 0.9096 (3) | 0.9783 (2) | 0.0239 (5) | |
H3A | 0.2873 | 0.9646 | 0.9148 | 0.029* | |
C4 | 0.2829 (3) | 0.9105 (3) | 1.0906 (2) | 0.0245 (5) | |
H4A | 0.1976 | 0.9649 | 1.1051 | 0.029* | |
C5 | 0.3578 (3) | 0.8300 (3) | 1.1807 (2) | 0.0244 (5) | |
C6 | 0.4829 (3) | 0.7496 (3) | 1.1642 (2) | 0.0269 (5) | |
H6 | 0.5320 | 0.6958 | 1.2280 | 0.032* | |
C7 | 0.5343 (3) | 0.7498 (3) | 1.0515 (2) | 0.0250 (5) | |
H7 | 0.6202 | 0.6961 | 1.0374 | 0.030* | |
O5 | 0.8758 (2) | 0.7357 (2) | 0.20757 (15) | 0.0345 (5) | |
O6 | 1.0354 (2) | 0.5601 (2) | 0.27470 (17) | 0.0385 (5) | |
O7 | 1.3135 (2) | 0.6129 (2) | −0.29233 (18) | 0.0368 (5) | |
O8 | 1.1731 (2) | 0.7994 (2) | −0.35307 (16) | 0.0347 (5) | |
N2 | 1.2191 (2) | 0.7014 (3) | −0.27572 (19) | 0.0287 (5) | |
C8 | 0.9814 (3) | 0.6492 (3) | 0.1953 (2) | 0.0256 (5) | |
C9 | 1.0424 (3) | 0.6604 (3) | 0.0705 (2) | 0.0233 (5) | |
C10 | 1.1613 (3) | 0.5752 (3) | 0.0471 (2) | 0.0253 (5) | |
H10 | 1.2030 | 0.5075 | 0.1090 | 0.030* | |
C11 | 1.2196 (3) | 0.5889 (3) | −0.0670 (2) | 0.0264 (5) | |
H11 | 1.3010 | 0.5311 | −0.0841 | 0.032* | |
C12 | 1.1562 (3) | 0.6885 (3) | −0.1550 (2) | 0.0252 (5) | |
C13 | 1.0376 (3) | 0.7750 (3) | −0.1345 (2) | 0.0259 (5) | |
H13 | 0.9963 | 0.8426 | −0.1967 | 0.031* | |
C14 | 0.9806 (3) | 0.7597 (3) | −0.0201 (2) | 0.0255 (5) | |
H14 | 0.8989 | 0.8174 | −0.0034 | 0.031* | |
N3 | 0.6982 (2) | 0.7378 (2) | 0.61824 (18) | 0.0254 (5) | |
H3N | 0.665 (3) | 0.734 (4) | 0.6902 (12) | 0.030* | |
N4 | 0.7971 (2) | 0.7223 (2) | 0.41892 (18) | 0.0261 (5) | |
H4N | 0.830 (3) | 0.728 (4) | 0.3454 (12) | 0.031* | |
C15 | 0.8607 (3) | 0.7624 (3) | 0.6003 (2) | 0.0274 (5) | |
H15A | 0.9072 | 0.6984 | 0.6663 | 0.033* | |
H15B | 0.8832 | 0.8655 | 0.5954 | 0.033* | |
C16 | 0.9224 (3) | 0.7273 (3) | 0.4870 (2) | 0.0310 (6) | |
H16A | 0.9946 | 0.8035 | 0.4418 | 0.037* | |
H16B | 0.9733 | 0.6317 | 0.5047 | 0.037* | |
C17 | 0.6672 (3) | 0.5903 (3) | 0.6066 (2) | 0.0269 (5) | |
H17A | 0.5616 | 0.5648 | 0.6317 | 0.032* | |
H17B | 0.7276 | 0.5163 | 0.6564 | 0.032* | |
C18 | 0.7046 (3) | 0.5908 (3) | 0.4791 (2) | 0.0299 (6) | |
H18A | 0.7592 | 0.5009 | 0.4744 | 0.036* | |
H18B | 0.6127 | 0.5935 | 0.4418 | 0.036* | |
C19 | 0.6263 (3) | 0.8510 (3) | 0.5300 (2) | 0.0304 (6) | |
H19A | 0.6328 | 0.9477 | 0.5453 | 0.036* | |
H19B | 0.5206 | 0.8261 | 0.5334 | 0.036* | |
C20 | 0.7063 (3) | 0.8562 (3) | 0.4098 (2) | 0.0318 (6) | |
H20A | 0.6330 | 0.8614 | 0.3541 | 0.038* | |
H20B | 0.7704 | 0.9444 | 0.3814 | 0.038* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0368 (10) | 0.0397 (11) | 0.0185 (9) | 0.0127 (8) | −0.0025 (7) | −0.0077 (7) |
O2 | 0.0355 (10) | 0.0357 (10) | 0.0175 (8) | 0.0069 (8) | −0.0028 (7) | −0.0053 (7) |
O3 | 0.0476 (12) | 0.0394 (11) | 0.0182 (9) | 0.0023 (9) | −0.0009 (8) | −0.0022 (8) |
O4 | 0.0375 (11) | 0.0371 (10) | 0.0264 (9) | 0.0021 (8) | 0.0072 (8) | −0.0096 (8) |
N1 | 0.0331 (12) | 0.0299 (11) | 0.0189 (10) | −0.0031 (9) | 0.0022 (8) | −0.0060 (8) |
C1 | 0.0243 (11) | 0.0254 (12) | 0.0183 (11) | −0.0019 (9) | −0.0008 (9) | −0.0047 (9) |
C2 | 0.0255 (12) | 0.0223 (11) | 0.0190 (11) | −0.0027 (9) | −0.0012 (9) | −0.0045 (9) |
C3 | 0.0255 (12) | 0.0255 (12) | 0.0198 (11) | −0.0014 (9) | −0.0041 (9) | −0.0041 (9) |
C4 | 0.0249 (12) | 0.0250 (12) | 0.0229 (12) | −0.0006 (9) | 0.0010 (9) | −0.0066 (9) |
C5 | 0.0300 (12) | 0.0256 (12) | 0.0162 (11) | −0.0037 (10) | 0.0026 (9) | −0.0050 (9) |
C6 | 0.0317 (13) | 0.0275 (12) | 0.0187 (11) | 0.0016 (10) | −0.0043 (10) | −0.0013 (9) |
C7 | 0.0257 (12) | 0.0250 (12) | 0.0222 (12) | 0.0019 (9) | 0.0003 (9) | −0.0040 (9) |
O5 | 0.0401 (11) | 0.0445 (11) | 0.0163 (9) | 0.0144 (9) | −0.0005 (7) | −0.0062 (8) |
O6 | 0.0454 (12) | 0.0458 (12) | 0.0193 (9) | 0.0158 (9) | −0.0035 (8) | −0.0019 (8) |
O7 | 0.0349 (10) | 0.0484 (12) | 0.0294 (10) | 0.0019 (9) | 0.0053 (8) | −0.0180 (9) |
O8 | 0.0352 (10) | 0.0478 (12) | 0.0194 (9) | −0.0030 (9) | −0.0015 (7) | −0.0068 (8) |
N2 | 0.0256 (11) | 0.0382 (12) | 0.0230 (11) | −0.0036 (9) | 0.0010 (8) | −0.0105 (9) |
C8 | 0.0264 (12) | 0.0291 (12) | 0.0192 (12) | 0.0002 (10) | −0.0015 (9) | −0.0037 (9) |
C9 | 0.0247 (12) | 0.0265 (12) | 0.0184 (11) | −0.0009 (9) | −0.0018 (9) | −0.0057 (9) |
C10 | 0.0258 (12) | 0.0245 (12) | 0.0235 (12) | −0.0003 (9) | −0.0039 (10) | −0.0026 (9) |
C11 | 0.0247 (12) | 0.0264 (12) | 0.0275 (13) | 0.0005 (9) | 0.0013 (10) | −0.0080 (10) |
C12 | 0.0255 (12) | 0.0298 (12) | 0.0204 (12) | −0.0048 (10) | 0.0015 (9) | −0.0081 (10) |
C13 | 0.0272 (12) | 0.0312 (13) | 0.0180 (11) | −0.0008 (10) | −0.0035 (9) | −0.0043 (9) |
C14 | 0.0243 (12) | 0.0294 (12) | 0.0215 (12) | 0.0036 (9) | −0.0013 (9) | −0.0056 (10) |
N3 | 0.0270 (11) | 0.0308 (11) | 0.0176 (10) | 0.0066 (9) | −0.0021 (8) | −0.0061 (8) |
N4 | 0.0290 (11) | 0.0304 (11) | 0.0169 (10) | 0.0033 (9) | 0.0004 (8) | −0.0045 (8) |
C15 | 0.0289 (13) | 0.0309 (13) | 0.0228 (12) | 0.0008 (10) | −0.0052 (10) | −0.0072 (10) |
C16 | 0.0258 (12) | 0.0425 (15) | 0.0232 (12) | 0.0004 (11) | 0.0003 (10) | −0.0075 (11) |
C17 | 0.0280 (12) | 0.0312 (13) | 0.0188 (12) | −0.0005 (10) | −0.0002 (9) | −0.0033 (9) |
C18 | 0.0365 (14) | 0.0306 (13) | 0.0217 (12) | −0.0009 (11) | −0.0018 (10) | −0.0062 (10) |
C19 | 0.0341 (14) | 0.0339 (14) | 0.0214 (12) | 0.0121 (11) | −0.0040 (10) | −0.0056 (10) |
C20 | 0.0408 (15) | 0.0317 (13) | 0.0195 (12) | 0.0090 (11) | −0.0038 (10) | −0.0018 (10) |
Geometric parameters (Å, º) top
O1—C1 | 1.281 (3) | C12—C13 | 1.384 (4) |
O2—C1 | 1.228 (3) | C13—C14 | 1.390 (3) |
O3—N1 | 1.229 (3) | C13—H13 | 0.9500 |
O4—N1 | 1.228 (3) | C14—H14 | 0.9500 |
N1—C5 | 1.475 (3) | N3—C17 | 1.483 (3) |
C1—C2 | 1.520 (3) | N3—C15 | 1.485 (3) |
C2—C3 | 1.386 (3) | N3—C19 | 1.487 (3) |
C2—C7 | 1.398 (3) | N3—H3N | 0.879 (10) |
C3—C4 | 1.390 (3) | N4—C20 | 1.486 (3) |
C3—H3A | 0.9500 | N4—C16 | 1.487 (3) |
C4—C5 | 1.384 (4) | N4—C18 | 1.487 (3) |
C4—H4A | 0.9500 | N4—H4N | 0.890 (10) |
C5—C6 | 1.383 (4) | C15—C16 | 1.539 (3) |
C6—C7 | 1.388 (3) | C15—H15A | 0.9900 |
C6—H6 | 0.9500 | C15—H15B | 0.9900 |
C7—H7 | 0.9500 | C16—H16A | 0.9900 |
O5—C8 | 1.273 (3) | C16—H16B | 0.9900 |
O6—C8 | 1.231 (3) | C17—C18 | 1.538 (3) |
O7—N2 | 1.228 (3) | C17—H17A | 0.9900 |
O8—N2 | 1.226 (3) | C17—H17B | 0.9900 |
N2—C12 | 1.479 (3) | C18—H18A | 0.9900 |
C8—C9 | 1.523 (3) | C18—H18B | 0.9900 |
C9—C10 | 1.387 (3) | C19—C20 | 1.538 (3) |
C9—C14 | 1.395 (3) | C19—H19A | 0.9900 |
C10—C11 | 1.393 (4) | C19—H19B | 0.9900 |
C10—H10 | 0.9500 | C20—H20A | 0.9900 |
C11—C12 | 1.382 (4) | C20—H20B | 0.9900 |
C11—H11 | 0.9500 | | |
| | | |
O4—N1—O3 | 124.0 (2) | C17—N3—C15 | 108.68 (19) |
O4—N1—C5 | 117.9 (2) | C17—N3—C19 | 109.7 (2) |
O3—N1—C5 | 118.0 (2) | C15—N3—C19 | 109.7 (2) |
O2—C1—O1 | 125.6 (2) | C17—N3—H3N | 105 (2) |
O2—C1—C2 | 119.0 (2) | C15—N3—H3N | 110 (2) |
O1—C1—C2 | 115.4 (2) | C19—N3—H3N | 114 (2) |
C3—C2—C7 | 120.3 (2) | C20—N4—C16 | 109.6 (2) |
C3—C2—C1 | 119.7 (2) | C20—N4—C18 | 109.5 (2) |
C7—C2—C1 | 120.0 (2) | C16—N4—C18 | 108.9 (2) |
C2—C3—C4 | 120.2 (2) | C20—N4—H4N | 103 (2) |
C2—C3—H3A | 119.9 | C16—N4—H4N | 111 (2) |
C4—C3—H3A | 119.9 | C18—N4—H4N | 115 (2) |
C5—C4—C3 | 118.2 (2) | N3—C15—C16 | 108.8 (2) |
C5—C4—H4A | 120.9 | N3—C15—H15A | 109.9 |
C3—C4—H4A | 120.9 | C16—C15—H15A | 109.9 |
C6—C5—C4 | 123.2 (2) | N3—C15—H15B | 109.9 |
C6—C5—N1 | 118.9 (2) | C16—C15—H15B | 109.9 |
C4—C5—N1 | 117.9 (2) | H15A—C15—H15B | 108.3 |
C5—C6—C7 | 117.9 (2) | N4—C16—C15 | 108.4 (2) |
C5—C6—H6 | 121.1 | N4—C16—H16A | 110.0 |
C7—C6—H6 | 121.1 | C15—C16—H16A | 110.0 |
C6—C7—C2 | 120.3 (2) | N4—C16—H16B | 110.0 |
C6—C7—H7 | 119.8 | C15—C16—H16B | 110.0 |
C2—C7—H7 | 119.8 | H16A—C16—H16B | 108.4 |
O8—N2—O7 | 124.1 (2) | N3—C17—C18 | 109.0 (2) |
O8—N2—C12 | 118.0 (2) | N3—C17—H17A | 109.9 |
O7—N2—C12 | 118.0 (2) | C18—C17—H17A | 109.9 |
O6—C8—O5 | 125.5 (2) | N3—C17—H17B | 109.9 |
O6—C8—C9 | 119.2 (2) | C18—C17—H17B | 109.9 |
O5—C8—C9 | 115.3 (2) | H17A—C17—H17B | 108.3 |
C10—C9—C14 | 120.2 (2) | N4—C18—C17 | 108.3 (2) |
C10—C9—C8 | 120.2 (2) | N4—C18—H18A | 110.0 |
C14—C9—C8 | 119.6 (2) | C17—C18—H18A | 110.0 |
C9—C10—C11 | 120.0 (2) | N4—C18—H18B | 110.0 |
C9—C10—H10 | 120.0 | C17—C18—H18B | 110.0 |
C11—C10—H10 | 120.0 | H18A—C18—H18B | 108.4 |
C12—C11—C10 | 118.5 (2) | N3—C19—C20 | 108.2 (2) |
C12—C11—H11 | 120.8 | N3—C19—H19A | 110.1 |
C10—C11—H11 | 120.8 | C20—C19—H19A | 110.1 |
C11—C12—C13 | 122.9 (2) | N3—C19—H19B | 110.1 |
C11—C12—N2 | 117.8 (2) | C20—C19—H19B | 110.1 |
C13—C12—N2 | 119.3 (2) | H19A—C19—H19B | 108.4 |
C12—C13—C14 | 117.9 (2) | N4—C20—C19 | 109.0 (2) |
C12—C13—H13 | 121.1 | N4—C20—H20A | 109.9 |
C14—C13—H13 | 121.1 | C19—C20—H20A | 109.9 |
C13—C14—C9 | 120.5 (2) | N4—C20—H20B | 109.9 |
C13—C14—H14 | 119.7 | C19—C20—H20B | 109.9 |
C9—C14—H14 | 119.7 | H20A—C20—H20B | 108.3 |
| | | |
O2—C1—C2—C3 | 6.3 (4) | C10—C11—C12—N2 | −179.8 (2) |
O1—C1—C2—C3 | −173.0 (2) | O8—N2—C12—C11 | −172.9 (2) |
O2—C1—C2—C7 | −173.4 (2) | O7—N2—C12—C11 | 7.4 (3) |
O1—C1—C2—C7 | 7.3 (3) | O8—N2—C12—C13 | 7.4 (3) |
C7—C2—C3—C4 | −1.2 (4) | O7—N2—C12—C13 | −172.3 (2) |
C1—C2—C3—C4 | 179.1 (2) | C11—C12—C13—C14 | −0.1 (4) |
C2—C3—C4—C5 | 0.5 (4) | N2—C12—C13—C14 | 179.7 (2) |
C3—C4—C5—C6 | 0.3 (4) | C12—C13—C14—C9 | 0.2 (4) |
C3—C4—C5—N1 | 178.4 (2) | C10—C9—C14—C13 | −0.2 (4) |
O4—N1—C5—C6 | 170.3 (2) | C8—C9—C14—C13 | 178.0 (2) |
O3—N1—C5—C6 | −9.1 (4) | C17—N3—C15—C16 | 50.7 (3) |
O4—N1—C5—C4 | −7.9 (3) | C19—N3—C15—C16 | −69.2 (3) |
O3—N1—C5—C4 | 172.7 (2) | C20—N4—C16—C15 | 50.2 (3) |
C4—C5—C6—C7 | −0.3 (4) | C18—N4—C16—C15 | −69.6 (3) |
N1—C5—C6—C7 | −178.4 (2) | N3—C15—C16—N4 | 15.8 (3) |
C5—C6—C7—C2 | −0.4 (4) | C15—N3—C17—C18 | −69.4 (2) |
C3—C2—C7—C6 | 1.1 (4) | C19—N3—C17—C18 | 50.5 (3) |
C1—C2—C7—C6 | −179.2 (2) | C20—N4—C18—C17 | −68.8 (3) |
O6—C8—C9—C10 | −2.6 (4) | C16—N4—C18—C17 | 51.1 (3) |
O5—C8—C9—C10 | 177.5 (2) | N3—C17—C18—N4 | 15.8 (3) |
O6—C8—C9—C14 | 179.2 (2) | C17—N3—C19—C20 | −68.8 (3) |
O5—C8—C9—C14 | −0.7 (4) | C15—N3—C19—C20 | 50.6 (3) |
C14—C9—C10—C11 | 0.1 (4) | C16—N4—C20—C19 | −68.9 (3) |
C8—C9—C10—C11 | −178.1 (2) | C18—N4—C20—C19 | 50.5 (3) |
C9—C10—C11—C12 | 0.0 (4) | N3—C19—C20—N4 | 15.6 (3) |
C10—C11—C12—C13 | 0.0 (4) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3N···O1 | 0.88 (2) | 1.66 (2) | 2.539 (3) | 173 (2) |
N4—H4N···O5 | 0.89 (2) | 1.65 (2) | 2.542 (3) | 175 (3) |
C15—H15A···O6i | 0.99 | 2.42 | 3.193 (3) | 134 |
C16—H16A···O4ii | 0.99 | 2.42 | 3.375 (3) | 161 |
C17—H17A···O7iii | 0.99 | 2.42 | 3.338 (3) | 153 |
C17—H17B···O6i | 0.99 | 2.42 | 3.313 (3) | 149 |
C20—H20A···O2iv | 0.99 | 2.41 | 3.043 (3) | 121 |
C20—H20B···O8v | 0.99 | 2.42 | 3.339 (3) | 154 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x+1, y, z−1; (iii) x−1, y, z+1; (iv) −x+1, −y+2, −z+1; (v) −x+2, −y+2, −z. |