Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808018060/su2050sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536808018060/su2050Isup2.hkl |
CCDC reference: 696440
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.010 Å
- Disorder in main residue
- R factor = 0.051
- wR factor = 0.158
- Data-to-parameter ratio = 14.0
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for C4
Alert level C SHFSU01_ALERT_2_C Test not performed. _refine_ls_shift/su_max and _refine_ls_shift/esd_max not present. Absolute value of the parameter shift to su ratio given 0.001 PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.23 PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.59 Ratio PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.83 Ratio PLAT245_ALERT_2_C U(iso) H2 Smaller than U(eq) C2 by ... 0.01 AngSq PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.18 PLAT301_ALERT_3_C Main Residue Disorder ......................... 2.00 Perc. PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 10 PLAT350_ALERT_3_C Short C-H Bond (0.96A) C2 - H2 ... 0.82 Ang. PLAT412_ALERT_2_C Short Intra XH3 .. XHn H7C .. H6A2 .. 1.89 Ang. PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT164_ALERT_4_C Nr. of Refined C-H H-Atoms in Heavy-At Struct... 2 PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for C26 PLAT720_ALERT_4_C Number of Unusual/Non-Standard Labels .......... 3
Alert level G PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 3
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 14 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 7 ALERT type 2 Indicator that the structure model may be wrong or deficient 5 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
All the reagents were of commercial grade and were used as received. N-tert-butyl-thioimidazole (tm) was synthesized by a literature method (Kister et al., 1979). To a solution of NiCl2.6H2O (1.0 mmol) in 5 ml methanol, a methanolic solution of N-tert-butyl-2-thioimidazole (1.0 mmol) was added and the mixture stirred for 40 minutes. This mixture was then added to the solution obtained by mixing NiCl2.6H2O (1.0 mmol) in methanol with a methanolic solution of 1,10-phenanthroline (3.0 mmol). The whole reaction mixture was stirred for a further 30 minutes. The clear solution obtained was filtered and evaporated to dryness. The solid compound obtained was dissolved in acetonitrile and green single crystals, suitable for X-ray analysis, were obtained by slow evaporation at room temperature. Yield 62%. Analysis calculated for C50H48N10S2Cl6Ni3: C 48.30, H 3.86, N 11.27, S 5.15%; found: C 48.24, H 3.78, N 11.21, S 5.12%. Selected IR frequencies (KBr, ν, cm-1): 725 (s), 849 (s), 1369 (w), 1575 (m), 1623 (w), 3060 (w), 3412 (s).
One of the methyl groups of the tert-butyl group of N-tert-butyl-2-thioimidazole is disordered between two equally populated positions (C6 and C6A; H6A and H6A1; H6B and H6B1; H6C and H6C1). C-bound H atoms were placed in geometrically idealized positions, with Csp2—H = 0.93 Å and Csp3—H = 0.96 Å, and treated as riding atoms with Uiso(H) = 1.2Ueq(C). H atoms attached to the O atoms were located in a difference Fourier map and refined as riding in their as found positions, with Uiso(H) = 1.5Ueq(O).
Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
[Ni(C12H8N2)3][NiCl3(C7H12N2S)]2·2C2H3N | F(000) = 2720 |
Mr = 1324.04 | Dx = 1.511 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 5736 reflections |
a = 22.8953 (15) Å | θ = 1.7–25.1° |
b = 15.2934 (10) Å | µ = 1.36 mm−1 |
c = 19.9417 (19) Å | T = 298 K |
β = 123.543 (3)° | Block, green |
V = 5819.7 (8) Å3 | 0.24 × 0.20 × 0.18 mm |
Z = 4 |
Bruker Kappa APEXII CCD area-detector diffractometer | 5178 independent reflections |
Radiation source: fine-focus sealed tube | 3346 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.076 |
ϕ and ω scans | θmax = 25.1°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −26→26 |
Tmin = 0.737, Tmax = 0.792 | k = −17→17 |
30921 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.157 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0987P)2 + 2.7947P] where P = (Fo2 + 2Fc2)/3 |
5178 reflections | (Δ/σ)max < 0.001 |
370 parameters | Δρmax = 1.24 e Å−3 |
3 restraints | Δρmin = −0.55 e Å−3 |
[Ni(C12H8N2)3][NiCl3(C7H12N2S)]2·2C2H3N | V = 5819.7 (8) Å3 |
Mr = 1324.04 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 22.8953 (15) Å | µ = 1.36 mm−1 |
b = 15.2934 (10) Å | T = 298 K |
c = 19.9417 (19) Å | 0.24 × 0.20 × 0.18 mm |
β = 123.543 (3)° |
Bruker Kappa APEXII CCD area-detector diffractometer | 5178 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3346 reflections with I > 2σ(I) |
Tmin = 0.737, Tmax = 0.792 | Rint = 0.076 |
30921 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 3 restraints |
wR(F2) = 0.157 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 1.24 e Å−3 |
5178 reflections | Δρmin = −0.55 e Å−3 |
370 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Ni1 | 0.00000 | 0.00042 (5) | 0.25000 | 0.0324 (3) | |
N1 | 0.0571 (2) | 0.1054 (2) | 0.3259 (2) | 0.0353 (12) | |
N2 | 0.0560 (2) | −0.0924 (2) | 0.3397 (2) | 0.0402 (12) | |
N3 | 0.0611 (2) | −0.0069 (3) | 0.2013 (2) | 0.0394 (12) | |
C8 | 0.1142 (3) | 0.1047 (4) | 0.3998 (3) | 0.0432 (17) | |
C9 | 0.1465 (3) | 0.1812 (4) | 0.4422 (3) | 0.0543 (19) | |
C10 | 0.1193 (3) | 0.2601 (4) | 0.4082 (4) | 0.060 (2) | |
C11 | 0.0597 (3) | 0.2640 (3) | 0.3294 (3) | 0.048 (2) | |
C12 | 0.0304 (2) | 0.1842 (3) | 0.2905 (3) | 0.0359 (17) | |
C13 | 0.0280 (3) | 0.3432 (4) | 0.2882 (4) | 0.065 (3) | |
C14 | 0.1128 (3) | −0.1368 (3) | 0.3578 (3) | 0.0534 (19) | |
C15 | 0.1476 (4) | −0.1940 (4) | 0.4220 (4) | 0.069 (2) | |
C16 | 0.1245 (4) | −0.2030 (4) | 0.4708 (4) | 0.071 (2) | |
C17 | 0.0649 (3) | −0.1584 (3) | 0.4557 (3) | 0.0542 (19) | |
C18 | 0.0313 (3) | −0.1036 (3) | 0.3870 (3) | 0.0424 (17) | |
C19 | 0.1208 (3) | 0.0335 (4) | 0.2245 (3) | 0.0503 (17) | |
C20 | 0.1528 (3) | 0.0259 (4) | 0.1814 (4) | 0.066 (3) | |
C21 | 0.1223 (4) | −0.0231 (5) | 0.1145 (4) | 0.068 (3) | |
C22 | 0.0604 (3) | −0.0683 (4) | 0.0887 (4) | 0.058 (2) | |
C23 | 0.0315 (3) | −0.0582 (3) | 0.1348 (3) | 0.0410 (17) | |
C24 | 0.0231 (4) | −0.1241 (5) | 0.0183 (4) | 0.072 (3) | |
C25 | −0.0359 (4) | −0.1657 (4) | −0.0022 (4) | 0.071 (3) | |
Ni2 | 0.29979 (3) | 0.96924 (4) | 0.47969 (4) | 0.0434 (2) | |
Cl1 | 0.25801 (8) | 0.97552 (11) | 0.55872 (9) | 0.0625 (6) | |
Cl2 | 0.27465 (7) | 0.88260 (10) | 0.37416 (8) | 0.0583 (5) | |
Cl3 | 0.27772 (7) | 1.10207 (9) | 0.42193 (8) | 0.0528 (5) | |
S1 | 0.41282 (7) | 0.93790 (9) | 0.58439 (8) | 0.0452 (4) | |
N4 | 0.4404 (2) | 0.8996 (3) | 0.4710 (3) | 0.0408 (16) | |
N5 | 0.5332 (2) | 0.8910 (3) | 0.5920 (2) | 0.0381 (12) | |
C1 | 0.4636 (3) | 0.9081 (3) | 0.5493 (3) | 0.0359 (17) | |
C2 | 0.5514 (3) | 0.8728 (4) | 0.5376 (3) | 0.0479 (19) | |
C3 | 0.4945 (3) | 0.8778 (4) | 0.4641 (3) | 0.0481 (17) | |
C4 | 0.5832 (3) | 0.8870 (4) | 0.6823 (3) | 0.0452 (17) | |
C5 | 0.5869 (4) | 0.9750 (4) | 0.7181 (4) | 0.089 (3) | |
C6 | 0.6584 (6) | 0.8705 (16) | 0.7056 (9) | 0.093 (6) | 0.75 (3) |
C7 | 0.5581 (4) | 0.8178 (5) | 0.7141 (4) | 0.077 (3) | |
C6A | 0.643 (2) | 0.830 (4) | 0.695 (3) | 0.093 (6) | 0.25 (3) |
N6 | 0.3858 (4) | 0.7541 (4) | 0.3045 (4) | 0.091 (3) | |
C26 | 0.3366 (4) | 0.7841 (4) | 0.2533 (4) | 0.066 (3) | |
C27 | 0.2734 (4) | 0.8224 (5) | 0.1875 (5) | 0.093 (3) | |
H8 | 0.13350 | 0.05120 | 0.42420 | 0.0520* | |
H9 | 0.18670 | 0.17810 | 0.49400 | 0.0650* | |
H10 | 0.14000 | 0.31130 | 0.43680 | 0.0720* | |
H13 | 0.04640 | 0.39620 | 0.31450 | 0.0780* | |
H14 | 0.13000 | −0.12900 | 0.32550 | 0.0640* | |
H15 | 0.18620 | −0.22550 | 0.43130 | 0.0830* | |
H16 | 0.14870 | −0.23950 | 0.51540 | 0.0860* | |
H19 | 0.14210 | 0.06790 | 0.27070 | 0.0600* | |
H20 | 0.19480 | 0.05460 | 0.19920 | 0.0790* | |
H21 | 0.14270 | −0.02700 | 0.08520 | 0.0810* | |
H24 | 0.04090 | −0.13130 | −0.01350 | 0.0870* | |
H25 | −0.05840 | −0.20020 | −0.04830 | 0.0850* | |
H2 | 0.593 (3) | 0.867 (3) | 0.555 (3) | 0.036 (14)* | |
H3 | 0.486 (3) | 0.868 (4) | 0.409 (4) | 0.061 (16)* | |
H5A | 0.59570 | 1.01920 | 0.69050 | 0.1340* | |
H5B | 0.62410 | 0.97510 | 0.77410 | 0.1340* | |
H4 | 0.397 (3) | 0.897 (3) | 0.435 (3) | 0.039 (15)* | |
H6A | 0.67440 | 0.92000 | 0.69040 | 0.1380* | 0.75 (3) |
H6B | 0.65930 | 0.81930 | 0.67830 | 0.1380* | 0.75 (3) |
H6C | 0.68860 | 0.86190 | 0.76270 | 0.1380* | 0.75 (3) |
H7A | 0.50960 | 0.82750 | 0.69350 | 0.1160* | |
H7B | 0.58520 | 0.82040 | 0.77180 | 0.1160* | |
H7C | 0.56360 | 0.76130 | 0.69730 | 0.1160* | |
H5C | 0.54330 | 0.98700 | 0.71250 | 0.1340* | |
H6A1 | 0.66990 | 0.86260 | 0.67940 | 0.1380* | 0.25 (3) |
H6A2 | 0.62430 | 0.77870 | 0.66220 | 0.1380* | 0.25 (3) |
H6A3 | 0.67260 | 0.81410 | 0.75030 | 0.1380* | 0.25 (3) |
H27A | 0.24970 | 0.85310 | 0.20790 | 0.1400* | |
H27B | 0.24340 | 0.77720 | 0.15140 | 0.1400* | |
H27C | 0.28470 | 0.86250 | 0.15930 | 0.1400* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0334 (5) | 0.0360 (5) | 0.0257 (5) | 0.0000 | 0.0151 (4) | 0.0000 |
N1 | 0.035 (2) | 0.042 (2) | 0.028 (2) | 0.0003 (18) | 0.0168 (19) | −0.0034 (18) |
N2 | 0.042 (2) | 0.035 (2) | 0.034 (2) | −0.0035 (19) | 0.015 (2) | 0.0018 (17) |
N3 | 0.039 (2) | 0.042 (2) | 0.036 (2) | −0.0011 (19) | 0.020 (2) | −0.0032 (18) |
C8 | 0.035 (3) | 0.060 (3) | 0.030 (3) | −0.001 (2) | 0.015 (2) | −0.005 (2) |
C9 | 0.046 (3) | 0.081 (4) | 0.034 (3) | −0.016 (3) | 0.021 (3) | −0.019 (3) |
C10 | 0.077 (4) | 0.062 (4) | 0.055 (4) | −0.023 (3) | 0.045 (4) | −0.029 (3) |
C11 | 0.062 (4) | 0.046 (3) | 0.051 (4) | −0.010 (3) | 0.041 (3) | −0.014 (3) |
C12 | 0.043 (3) | 0.040 (3) | 0.035 (3) | −0.003 (2) | 0.028 (2) | −0.004 (2) |
C13 | 0.092 (5) | 0.039 (3) | 0.087 (5) | −0.016 (3) | 0.064 (4) | −0.015 (3) |
C14 | 0.042 (3) | 0.043 (3) | 0.057 (4) | 0.007 (3) | 0.016 (3) | −0.001 (3) |
C15 | 0.062 (4) | 0.050 (4) | 0.063 (4) | 0.008 (3) | 0.014 (4) | 0.007 (3) |
C16 | 0.069 (4) | 0.043 (3) | 0.046 (4) | 0.000 (3) | −0.003 (3) | 0.014 (3) |
C17 | 0.063 (4) | 0.039 (3) | 0.034 (3) | −0.014 (3) | 0.010 (3) | 0.005 (2) |
C18 | 0.047 (3) | 0.033 (3) | 0.035 (3) | −0.009 (2) | 0.015 (3) | −0.001 (2) |
C19 | 0.044 (3) | 0.057 (3) | 0.051 (3) | −0.001 (3) | 0.027 (3) | −0.002 (3) |
C20 | 0.053 (4) | 0.085 (5) | 0.078 (5) | 0.008 (3) | 0.047 (4) | 0.015 (4) |
C21 | 0.074 (5) | 0.091 (5) | 0.064 (5) | 0.021 (4) | 0.054 (4) | 0.018 (4) |
C22 | 0.077 (4) | 0.059 (3) | 0.051 (4) | 0.034 (3) | 0.043 (3) | 0.016 (3) |
C23 | 0.049 (3) | 0.040 (3) | 0.034 (3) | 0.014 (2) | 0.023 (3) | 0.005 (2) |
C24 | 0.105 (6) | 0.078 (4) | 0.051 (4) | 0.027 (4) | 0.054 (4) | 0.000 (3) |
C25 | 0.104 (6) | 0.059 (4) | 0.041 (4) | 0.022 (4) | 0.035 (4) | −0.005 (3) |
Ni2 | 0.0394 (4) | 0.0561 (4) | 0.0325 (4) | 0.0045 (3) | 0.0185 (3) | −0.0031 (3) |
Cl1 | 0.0540 (9) | 0.0980 (12) | 0.0409 (8) | 0.0098 (8) | 0.0297 (7) | 0.0020 (7) |
Cl2 | 0.0496 (8) | 0.0748 (10) | 0.0400 (8) | 0.0050 (7) | 0.0181 (7) | −0.0152 (7) |
Cl3 | 0.0476 (8) | 0.0590 (8) | 0.0495 (9) | −0.0008 (6) | 0.0254 (7) | 0.0015 (6) |
S1 | 0.0413 (7) | 0.0626 (8) | 0.0318 (7) | 0.0068 (6) | 0.0203 (6) | −0.0018 (6) |
N4 | 0.042 (3) | 0.053 (3) | 0.026 (2) | 0.000 (2) | 0.018 (2) | −0.0013 (19) |
N5 | 0.039 (2) | 0.051 (2) | 0.026 (2) | 0.0010 (19) | 0.019 (2) | 0.0021 (18) |
C1 | 0.041 (3) | 0.040 (3) | 0.027 (3) | −0.001 (2) | 0.019 (2) | 0.002 (2) |
C2 | 0.039 (3) | 0.067 (4) | 0.043 (3) | −0.004 (3) | 0.026 (3) | −0.003 (3) |
C3 | 0.051 (3) | 0.061 (3) | 0.040 (3) | −0.003 (3) | 0.030 (3) | 0.000 (3) |
C4 | 0.040 (3) | 0.065 (3) | 0.029 (3) | 0.004 (3) | 0.018 (2) | 0.006 (2) |
C5 | 0.096 (6) | 0.076 (5) | 0.040 (4) | −0.009 (4) | 0.003 (4) | −0.008 (3) |
C6 | 0.036 (6) | 0.183 (16) | 0.043 (6) | 0.002 (7) | 0.012 (6) | 0.004 (9) |
C7 | 0.080 (5) | 0.091 (5) | 0.050 (4) | −0.001 (4) | 0.029 (4) | 0.023 (3) |
C6A | 0.036 (6) | 0.183 (16) | 0.043 (6) | 0.002 (7) | 0.012 (6) | 0.004 (9) |
N6 | 0.103 (5) | 0.105 (5) | 0.062 (4) | 0.008 (4) | 0.043 (4) | 0.005 (4) |
C26 | 0.088 (5) | 0.066 (4) | 0.054 (4) | −0.010 (4) | 0.045 (4) | −0.002 (3) |
C27 | 0.099 (6) | 0.080 (5) | 0.073 (5) | 0.004 (4) | 0.030 (5) | 0.006 (4) |
Ni1—N1 | 2.095 (3) | C21—C22 | 1.395 (12) |
Ni1—N2 | 2.079 (3) | C22—C24 | 1.450 (10) |
Ni1—N3 | 2.101 (5) | C22—C23 | 1.407 (10) |
Ni1—N1i | 2.095 (3) | C24—C25 | 1.337 (13) |
Ni1—N2i | 2.079 (3) | C8—H8 | 0.9300 |
Ni1—N3i | 2.101 (5) | C9—H9 | 0.9300 |
Ni2—Cl2 | 2.2753 (16) | C10—H10 | 0.9300 |
Ni2—Cl3 | 2.2507 (15) | C13—H13 | 0.9300 |
Ni2—S1 | 2.3054 (17) | C14—H14 | 0.9300 |
Ni2—Cl1 | 2.253 (2) | C15—H15 | 0.9300 |
S1—C1 | 1.717 (7) | C16—H16 | 0.9300 |
N1—C8 | 1.324 (7) | C19—H19 | 0.9300 |
N1—C12 | 1.359 (6) | C20—H20 | 0.9300 |
N2—C18 | 1.352 (8) | C21—H21 | 0.9300 |
N2—C14 | 1.328 (8) | C24—H24 | 0.9300 |
N3—C23 | 1.357 (6) | C25—H25 | 0.9300 |
N3—C19 | 1.329 (9) | C2—C3 | 1.320 (8) |
N4—C1 | 1.349 (7) | C4—C5 | 1.504 (9) |
N4—C3 | 1.361 (9) | C4—C6A | 1.52 (6) |
N5—C1 | 1.354 (8) | C4—C6 | 1.536 (19) |
N5—C2 | 1.388 (8) | C4—C7 | 1.502 (11) |
N5—C4 | 1.510 (6) | C2—H2 | 0.82 (7) |
N4—H4 | 0.85 (6) | C3—H3 | 1.02 (7) |
N6—C26 | 1.118 (11) | C5—H5A | 0.9600 |
C8—C9 | 1.393 (8) | C5—H5B | 0.9600 |
C9—C10 | 1.355 (9) | C5—H5C | 0.9600 |
C10—C11 | 1.402 (9) | C6—H6A | 0.9600 |
C11—C12 | 1.402 (7) | C6—H6B | 0.9600 |
C11—C13 | 1.418 (8) | C6—H6C | 0.9600 |
C12—C12i | 1.436 (7) | C6A—H6A2 | 0.9600 |
C13—C13i | 1.344 (10) | C6A—H6A3 | 0.9500 |
C14—C15 | 1.383 (8) | C6A—H6A1 | 0.9700 |
C15—C16 | 1.347 (13) | C7—H7B | 0.9600 |
C16—C17 | 1.401 (12) | C7—H7C | 0.9600 |
C17—C18 | 1.417 (7) | C7—H7A | 0.9600 |
C17—C25i | 1.412 (12) | C26—C27 | 1.435 (12) |
C18—C23i | 1.431 (10) | C27—H27A | 0.9600 |
C19—C20 | 1.409 (10) | C27—H27B | 0.9600 |
C20—C21 | 1.341 (10) | C27—H27C | 0.9600 |
N1—Ni1—N2 | 93.42 (13) | C8—C9—H9 | 120.00 |
N1—Ni1—N3 | 93.77 (18) | C11—C10—H10 | 120.00 |
N1—Ni1—N1i | 79.98 (13) | C9—C10—H10 | 120.00 |
N1—Ni1—N2i | 170.55 (15) | C13i—C13—H13 | 119.00 |
N1—Ni1—N3i | 90.91 (18) | C11—C13—H13 | 119.00 |
N2—Ni1—N3 | 96.30 (18) | N2—C14—H14 | 118.00 |
N1i—Ni1—N2 | 170.55 (15) | C15—C14—H14 | 118.00 |
N2—Ni1—N2i | 93.90 (13) | C14—C15—H15 | 121.00 |
N2—Ni1—N3i | 79.49 (18) | C16—C15—H15 | 121.00 |
N1i—Ni1—N3 | 90.91 (18) | C17—C16—H16 | 120.00 |
N2i—Ni1—N3 | 79.49 (18) | C15—C16—H16 | 119.00 |
N3—Ni1—N3i | 173.89 (18) | N3—C19—H19 | 119.00 |
N1i—Ni1—N2i | 93.42 (13) | C20—C19—H19 | 119.00 |
N1i—Ni1—N3i | 93.77 (18) | C19—C20—H20 | 120.00 |
N2i—Ni1—N3i | 96.30 (18) | C21—C20—H20 | 120.00 |
Cl1—Ni2—Cl2 | 133.14 (7) | C20—C21—H21 | 120.00 |
Cl1—Ni2—Cl3 | 104.92 (7) | C22—C21—H21 | 120.00 |
Cl1—Ni2—S1 | 94.21 (6) | C25—C24—H24 | 119.00 |
Cl2—Ni2—Cl3 | 100.47 (6) | C22—C24—H24 | 119.00 |
Cl2—Ni2—S1 | 107.47 (6) | C24—C25—H25 | 119.00 |
Cl3—Ni2—S1 | 118.25 (6) | C17i—C25—H25 | 119.00 |
Ni2—S1—C1 | 111.11 (19) | N4—C1—N5 | 106.5 (6) |
Ni1—N1—C8 | 129.5 (3) | S1—C1—N5 | 128.4 (4) |
Ni1—N1—C12 | 112.5 (3) | S1—C1—N4 | 125.1 (5) |
C8—N1—C12 | 118.0 (4) | N5—C2—C3 | 108.5 (6) |
C14—N2—C18 | 118.0 (4) | N4—C3—C2 | 107.3 (6) |
Ni1—N2—C18 | 112.9 (4) | N5—C4—C6 | 110.6 (7) |
Ni1—N2—C14 | 128.9 (4) | N5—C4—C5 | 109.7 (5) |
Ni1—N3—C19 | 129.3 (4) | C5—C4—C6 | 104.1 (10) |
C19—N3—C23 | 118.1 (5) | C5—C4—C7 | 111.4 (6) |
Ni1—N3—C23 | 112.5 (4) | C5—C4—C6A | 129 (2) |
C1—N4—C3 | 110.0 (5) | C6—C4—C7 | 112.5 (10) |
C2—N5—C4 | 124.5 (5) | C6A—C4—C7 | 93 (2) |
C1—N5—C2 | 107.7 (4) | N5—C4—C7 | 108.5 (5) |
C1—N5—C4 | 127.7 (5) | N5—C4—C6A | 104.0 (19) |
C1—N4—H4 | 121 (5) | N5—C2—H2 | 118 (4) |
C3—N4—H4 | 128 (5) | C3—C2—H2 | 133 (4) |
N1—C8—C9 | 122.4 (5) | N4—C3—H3 | 120 (4) |
C8—C9—C10 | 120.1 (5) | C2—C3—H3 | 132 (4) |
C9—C10—C11 | 119.5 (5) | C4—C5—H5A | 109.00 |
C10—C11—C12 | 117.1 (5) | C4—C5—H5B | 110.00 |
C12—C11—C13 | 119.2 (5) | C4—C5—H5C | 110.00 |
C10—C11—C13 | 123.7 (5) | H5A—C5—H5B | 109.00 |
N1—C12—C12i | 117.6 (4) | H5A—C5—H5C | 109.00 |
N1—C12—C11 | 123.0 (5) | H5B—C5—H5C | 109.00 |
C11—C12—C12i | 119.5 (4) | C4—C6—H6A | 110.00 |
C11—C13—C13i | 121.3 (6) | C4—C6—H6B | 110.00 |
N2—C14—C15 | 123.5 (7) | C4—C6—H6C | 109.00 |
C14—C15—C16 | 118.6 (8) | H6A—C6—H6B | 109.00 |
C15—C16—C17 | 121.3 (6) | H6A—C6—H6C | 109.00 |
C16—C17—C18 | 116.1 (6) | H6B—C6—H6C | 109.00 |
C18—C17—C25i | 118.7 (6) | C4—C6A—H6A2 | 110.00 |
C16—C17—C25i | 125.2 (5) | C4—C6A—H6A3 | 110.00 |
N2—C18—C23i | 117.6 (4) | H6A1—C6A—H6A2 | 109.00 |
N2—C18—C17 | 122.5 (6) | H6A1—C6A—H6A3 | 109.00 |
C17—C18—C23i | 119.9 (6) | H6A2—C6A—H6A3 | 110.00 |
N3—C19—C20 | 122.1 (5) | C4—C6A—H6A1 | 109.00 |
C19—C20—C21 | 119.5 (7) | H7B—C7—H7C | 109.00 |
C20—C21—C22 | 120.5 (8) | C4—C7—H7A | 109.00 |
C21—C22—C23 | 117.0 (6) | C4—C7—H7B | 109.00 |
C21—C22—C24 | 125.7 (8) | C4—C7—H7C | 109.00 |
C23—C22—C24 | 117.3 (7) | H7A—C7—H7B | 110.00 |
N3—C23—C18i | 116.9 (6) | H7A—C7—H7C | 110.00 |
C18i—C23—C22 | 120.3 (5) | N6—C26—C27 | 179.9 (12) |
N3—C23—C22 | 122.8 (6) | C26—C27—H27A | 109.00 |
C22—C24—C25 | 122.1 (8) | C26—C27—H27B | 110.00 |
C17i—C25—C24 | 121.6 (6) | C26—C27—H27C | 110.00 |
N1—C8—H8 | 119.00 | H27A—C27—H27B | 109.00 |
C9—C8—H8 | 119.00 | H27A—C27—H27C | 110.00 |
C10—C9—H9 | 120.00 | H27B—C27—H27C | 109.00 |
N2—Ni1—N1—C8 | 8.6 (6) | C1—N5—C2—C3 | −0.6 (7) |
N3—Ni1—N1—C8 | −87.9 (6) | C4—N5—C2—C3 | 176.5 (5) |
N1i—Ni1—N1—C8 | −178.2 (6) | C2—N5—C1—N4 | 0.5 (6) |
N3i—Ni1—N1—C8 | 88.2 (6) | C2—N5—C4—C7 | −117.4 (7) |
N2—Ni1—N1—C12 | −173.1 (4) | C1—N5—C4—C7 | 59.2 (8) |
N3—Ni1—N1—C12 | 90.3 (4) | C4—N5—C1—N4 | −176.5 (5) |
N1i—Ni1—N1—C12 | 0.1 (4) | C2—N5—C1—S1 | −177.8 (4) |
N3i—Ni1—N1—C12 | −93.6 (4) | C2—N5—C4—C5 | 120.8 (7) |
N1—Ni1—N2—C14 | −92.3 (4) | C1—N5—C4—C6 | −176.9 (11) |
N3—Ni1—N2—C14 | 1.9 (4) | C2—N5—C4—C6 | 6.5 (12) |
N2i—Ni1—N2—C14 | 81.7 (4) | N1—C8—C9—C10 | 0.5 (11) |
N3i—Ni1—N2—C14 | 177.4 (4) | C8—C9—C10—C11 | −1.8 (11) |
N1—Ni1—N2—C18 | 84.0 (3) | C9—C10—C11—C12 | 1.4 (11) |
N3—Ni1—N2—C18 | 178.2 (3) | C9—C10—C11—C13 | −179.0 (7) |
N2i—Ni1—N2—C18 | −102.0 (3) | C12—C11—C13—C13i | −2.3 (11) |
N3i—Ni1—N2—C18 | −6.3 (3) | C10—C11—C12—N1 | 0.2 (10) |
N1—Ni1—N3—C19 | 9.7 (5) | C13—C11—C12—C12i | 0.9 (10) |
N2—Ni1—N3—C19 | −84.2 (5) | C10—C11—C12—C12i | −179.6 (6) |
N1i—Ni1—N3—C19 | 89.7 (5) | C13—C11—C12—N1 | −179.4 (6) |
N2i—Ni1—N3—C19 | −177.0 (5) | C10—C11—C13—C13i | 178.1 (8) |
N1—Ni1—N3—C23 | −167.3 (3) | N1—C12—C12i—C11i | −180.0 (6) |
N2—Ni1—N3—C23 | 98.9 (3) | C11—C12—C12i—N1i | −180.0 (6) |
N1i—Ni1—N3—C23 | −87.3 (3) | N1—C12—C12i—N1i | 0.3 (8) |
N2i—Ni1—N3—C23 | 6.1 (3) | C11—C12—C12i—C11i | −0.2 (9) |
Cl3—Ni2—S1—C1 | −81.0 (2) | C11—C13—C13i—C11i | 3.1 (12) |
Cl1—Ni2—S1—C1 | 169.56 (19) | N2—C14—C15—C16 | −2.6 (9) |
Cl2—Ni2—S1—C1 | 31.7 (2) | C14—C15—C16—C17 | 2.5 (10) |
Ni2—S1—C1—N4 | −3.1 (5) | C15—C16—C17—C25i | 178.2 (6) |
Ni2—S1—C1—N5 | 175.0 (4) | C15—C16—C17—C18 | −0.4 (9) |
Ni1—N1—C8—C9 | 179.3 (5) | C18—C17—C25i—C24i | 1.8 (9) |
C8—N1—C12—C12i | 178.3 (6) | C16—C17—C25i—C24i | −176.8 (7) |
Ni1—N1—C12—C11 | −180.0 (5) | C16—C17—C18—C23i | 177.6 (5) |
C12—N1—C8—C9 | 1.1 (10) | C25i—C17—C18—N2 | 179.4 (5) |
Ni1—N1—C12—C12i | −0.2 (6) | C25i—C17—C18—C23i | −1.1 (8) |
C8—N1—C12—C11 | −1.5 (9) | C16—C17—C18—N2 | −1.9 (8) |
Ni1—N2—C18—C23i | 5.6 (5) | C17—C18—C23i—C22i | −0.5 (8) |
C14—N2—C18—C17 | 2.0 (7) | N2—C18—C23i—N3i | −0.4 (7) |
Ni1—N2—C18—C17 | −174.8 (4) | C17—C18—C23i—N3i | −179.9 (5) |
Ni1—N2—C14—C15 | 176.6 (4) | N2—C18—C23i—C22i | 179.0 (5) |
C14—N2—C18—C23i | −177.6 (4) | N3—C19—C20—C21 | 0.4 (10) |
C18—N2—C14—C15 | 0.4 (7) | C19—C20—C21—C22 | −1.8 (10) |
Ni1—N3—C19—C20 | −175.5 (4) | C20—C21—C22—C24 | −179.1 (7) |
C23—N3—C19—C20 | 1.3 (8) | C20—C21—C22—C23 | 1.4 (10) |
C19—N3—C23—C22 | −1.7 (8) | C24—C22—C23—C18i | 1.5 (8) |
Ni1—N3—C23—C18i | −5.0 (6) | C21—C22—C23—N3 | 0.4 (9) |
C19—N3—C23—C18i | 177.6 (5) | C24—C22—C23—N3 | −179.2 (5) |
Ni1—N3—C23—C22 | 175.6 (4) | C23—C22—C24—C25 | −0.9 (10) |
C3—N4—C1—N5 | −0.3 (6) | C21—C22—C24—C25 | 179.6 (7) |
C3—N4—C1—S1 | 178.2 (4) | C21—C22—C23—C18i | −179.0 (6) |
C1—N4—C3—C2 | −0.1 (7) | C22—C24—C25—C17i | −0.8 (11) |
C4—N5—C1—S1 | 5.2 (8) | N5—C2—C3—N4 | 0.5 (7) |
C1—N5—C4—C5 | −62.7 (8) |
Symmetry code: (i) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···Cl2 | 0.85 (6) | 2.37 (7) | 3.178 (6) | 160 (6) |
C2—H2···Cl3ii | 0.82 (7) | 2.77 (7) | 3.552 (8) | 160 (4) |
C5—H5C···S1 | 0.96 | 2.75 | 3.402 (9) | 126 |
C7—H7A···S1 | 0.96 | 2.68 | 3.409 (8) | 133 |
C10—H10···Cl3iii | 0.93 | 2.72 | 3.557 (7) | 151 |
C25—H25···N6iv | 0.93 | 2.60 | 3.502 (9) | 162 |
Symmetry codes: (ii) −x+1, −y+2, −z+1; (iii) −x+1/2, −y+3/2, −z+1; (iv) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C12H8N2)3][NiCl3(C7H12N2S)]2·2C2H3N |
Mr | 1324.04 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 298 |
a, b, c (Å) | 22.8953 (15), 15.2934 (10), 19.9417 (19) |
β (°) | 123.543 (3) |
V (Å3) | 5819.7 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.36 |
Crystal size (mm) | 0.24 × 0.20 × 0.18 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.737, 0.792 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 30921, 5178, 3346 |
Rint | 0.076 |
(sin θ/λ)max (Å−1) | 0.596 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.157, 1.07 |
No. of reflections | 5178 |
No. of parameters | 370 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.24, −0.55 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···Cl2 | 0.85 (6) | 2.37 (7) | 3.178 (6) | 160 (6) |
C2—H2···Cl3i | 0.82 (7) | 2.77 (7) | 3.552 (8) | 160 (4) |
C5—H5C···S1 | 0.96 | 2.75 | 3.402 (9) | 126 |
C7—H7A···S1 | 0.96 | 2.68 | 3.409 (8) | 133 |
C10—H10···Cl3ii | 0.93 | 2.72 | 3.557 (7) | 151 |
C25—H25···N6iii | 0.93 | 2.60 | 3.502 (9) | 162 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1/2, −y+3/2, −z+1; (iii) x−1/2, −y+1/2, z−1/2. |
2-Thioimidazole (N,N,S donors) and its alkyl derivatives have antithyroid activity and platelet inhibitory effects. (Fatimi et al., 1994; Iradyan et al., 1987). The literature revealed the presence of various nickel(II) complexes with phenanthroline (Suescun et al., 1999; Yu et al. (2003); Fang & Dai, 2006; Chen et al., 2007) but none with N-tert-butyl-2-thioimidazole, except the one reported recently (Senda et al., 2006). The present work reports the first structure of a nickel(II) complex with N-tert-butyl-2-thioimidazole and 1,10 phenanthroline, containing a tetrahedral anion, [Ni(tm)(Cl)3]-, and an octahedral cation, [Ni(phen)3]2+.
The title complex (I) is centrosymmetric, ionic in nature and comprises of one complex cation [Ni(phen)3]2+ and two complex anions [Ni(tm)(Cl)3]- in the unit cell (Fig. 1). The metal centre in [Ni(phen)3]2+ is in an octahedral environment, the equatorial plane of which is formed by four phen nitrogen atoms, and the axial positions are occupied by another two nitrogen atoms of phen, with Ni1—N bond distances in the range of 2.079 (4)–2.100 (4) Å. The dihedral angles between the meanplanes of the neighboring phen rings are 77.53°, 86.07° and 85.97°. The cis-angles in the octahedron deviate only slightly from 90° and the trans angle in the axial position is almost linear i.e. 170.54 (15)°. The nickel(II) atom in the [Ni(tm)(Cl)3]- anion is coordinated by three chlorine atoms and one sulfur atom of tm in a distorted tetrahedral geometry. The Ni—Cl bond distances are in the range of 2.251 (15) to 2.275 (15) Å. In the anion the two short bond distances (Ni2—Cl3 and Ni2—Cl1 of 2.2507 (15) and 2.253 (2) Å, respectively) and two long bond distances (Ni2—S1 and Ni2—Cl2 of 2.3054 (17) and 2.2753 (16) Å, respectively) make the geometry distorted tetrahedral.
Due to the presence of several intermolecular interactions between the three chloride ions bonded to atom Ni2 and the hydrogen atoms present on the phen rings, the complex cation is linked to six complex anions (Fig. 2 and Table 1), whereas the complex anions are linked to four complex cations through C—H···Cl hydrogen bonds (Fig. 3 and Table 1). In the crystal packing of complex (I) two layers are linked by hydrogen bonds in the bc plane. The [Ni(phen)3]2+ cations and the [Ni(tm)(Cl)3]- anions interact with each other via hydrogen bonds formed by the terminally coordinated chloride ions of the complex anion (Cl1, Cl2 and Cl3) and the hydrogen atoms present on the phen ligands (Fig. 4). The two complex anions also interact with one another through π–π stacking, with a separation of ca. 3.52 Å, and intermolecular C—H···Cl and C—H···N interactions involving the hydrogen atom of the middle ring of phenanthroline and the nitrogen atom of the acetonitrile molecule present in the lattice (Table 1).