









Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808016309/su2054sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S1600536808016309/su2054Isup2.hkl |
CCDC reference: 696400
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean
(C-C) = 0.002 Å
- R factor = 0.024
- wR factor = 0.060
- Data-to-parameter ratio = 20.6
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT230_ALERT_2_C Hirshfeld Test Diff for O2 -- C6 .. 5.23 su PLAT230_ALERT_2_C Hirshfeld Test Diff for O7 -- C14 .. 5.76 su PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Ni1 -- O2 .. 5.07 su PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Ni1 -- O7 .. 7.01 su PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Ni1 -- N2 .. 5.53 su PLAT432_ALERT_2_C Short Inter X...Y Contact C2 .. C13 .. 3.16 Ang. PLAT432_ALERT_2_C Short Inter X...Y Contact C3 .. C14 .. 3.18 Ang. PLAT432_ALERT_2_C Short Inter X...Y Contact C3 .. C12 .. 3.19 Ang. PLAT432_ALERT_2_C Short Inter X...Y Contact C6 .. C9 .. 3.12 Ang. PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT720_ALERT_4_C Number of Unusual/Non-Standard Labels .......... 8
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 29.99 From the CIF: _reflns_number_total 6379 Count of symmetry unique reflns 3324 Completeness (_total/calc) 191.91% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 3055 Fraction of Friedel pairs measured 0.919 Are heavy atom types Z>Si present yes PLAT792_ALERT_1_G Check the Absolute Configuration of C16 = ... R
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 11 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 9 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
An aqueous solution of Ni(NO3)2.6H2O (290 mg, 1 mmol), propane-1,2-diamine (80 mg, 2 mmol) and pyridine-2,6-dicarboxylic acid (360 mg, 2 mmol) was added to each other in a 1:2:2 molar ratio, and the reaction mixture was heated at about 40°C for 5 h. Green crystals of the title compound were obtained from the solution after four weeks at room temperature.
The hydrogen atoms of the NH3 groups and the water molecules were located in difference Fourier maps. The H(C) atom positions were included in calculated positions and treated as riding atoms with Uiso(H) = 1.2Ueq(parent C or O atoms) and 1.5Ueq(parent N or C-methyl atoms).
Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
(C3H12N2)[Ni(C7H3NO4)2]·4H2O | F(000) = 1120 |
Mr = 537.13 | Dx = 1.635 Mg m−3 |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | Cell parameters from 410 reflections |
a = 20.7598 (6) Å | θ = 3–29° |
b = 8.2582 (2) Å | µ = 0.96 mm−1 |
c = 12.7242 (4) Å | T = 100 K |
V = 2181.42 (11) Å3 | Prism, light-green |
Z = 4 | 0.26 × 0.22 × 0.11 mm |
Bruker APEXII CCD area-detector diffractometer | 6379 independent reflections |
Radiation source: fine-focus sealed tube | 6016 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
ω scans | θmax = 30.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −29→29 |
Tmin = 0.781, Tmax = 0.898 | k = −11→11 |
36654 measured reflections | l = −17→17 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.023 | H-atom parameters constrained |
wR(F2) = 0.059 | w = 1/[σ2(Fo2) + (0.03P)2 + 0.5P] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max = 0.001 |
6379 reflections | Δρmax = 0.34 e Å−3 |
310 parameters | Δρmin = −0.33 e Å−3 |
1 restraint | Absolute structure: Flack (1983), with how many Friedel pairs? |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.004 (7) |
(C3H12N2)[Ni(C7H3NO4)2]·4H2O | V = 2181.42 (11) Å3 |
Mr = 537.13 | Z = 4 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 20.7598 (6) Å | µ = 0.96 mm−1 |
b = 8.2582 (2) Å | T = 100 K |
c = 12.7242 (4) Å | 0.26 × 0.22 × 0.11 mm |
Bruker APEXII CCD area-detector diffractometer | 6379 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 6016 reflections with I > 2σ(I) |
Tmin = 0.781, Tmax = 0.898 | Rint = 0.035 |
36654 measured reflections |
R[F2 > 2σ(F2)] = 0.023 | H-atom parameters constrained |
wR(F2) = 0.059 | Δρmax = 0.34 e Å−3 |
S = 1.01 | Δρmin = −0.33 e Å−3 |
6379 reflections | Absolute structure: Flack (1983), with how many Friedel pairs? |
310 parameters | Absolute structure parameter: 0.004 (7) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.230880 (7) | 0.50781 (2) | 0.25665 (2) | 0.00841 (4) | |
O1 | 0.36657 (5) | 0.27840 (12) | 0.44207 (8) | 0.0123 (2) | |
O2 | 0.30848 (5) | 0.35043 (12) | 0.30169 (8) | 0.0110 (2) | |
O3 | 0.15872 (5) | 0.68763 (13) | 0.28120 (8) | 0.0131 (2) | |
O4 | 0.10593 (5) | 0.81657 (13) | 0.41025 (9) | 0.0133 (2) | |
O5 | 0.35128 (5) | 0.74395 (13) | 0.04995 (8) | 0.0128 (2) | |
O6 | 0.30178 (5) | 0.66991 (13) | 0.19960 (8) | 0.0113 (2) | |
O7 | 0.15889 (5) | 0.32530 (12) | 0.24551 (9) | 0.0120 (2) | |
O8 | 0.09570 (5) | 0.20477 (13) | 0.12645 (9) | 0.0146 (2) | |
N1 | 0.23302 (5) | 0.53498 (17) | 0.41041 (11) | 0.0085 (2) | |
N2 | 0.22246 (6) | 0.48264 (15) | 0.10356 (12) | 0.0090 (3) | |
C1 | 0.27701 (7) | 0.45504 (17) | 0.46722 (12) | 0.0087 (2) | |
C2 | 0.28041 (8) | 0.47344 (19) | 0.57519 (13) | 0.0109 (3) | |
H2A | 0.3120 | 0.4178 | 0.6153 | 0.013* | |
C3 | 0.23594 (7) | 0.57630 (18) | 0.62343 (12) | 0.0112 (3) | |
H3A | 0.2371 | 0.5909 | 0.6975 | 0.013* | |
C4 | 0.18997 (7) | 0.65754 (17) | 0.56366 (11) | 0.0102 (3) | |
H4A | 0.1593 | 0.7270 | 0.5958 | 0.012* | |
C5 | 0.19040 (7) | 0.63384 (17) | 0.45558 (11) | 0.0088 (2) | |
C6 | 0.32098 (6) | 0.35197 (16) | 0.39952 (12) | 0.0096 (2) | |
C7 | 0.14761 (7) | 0.71970 (17) | 0.37710 (11) | 0.0102 (3) | |
C8 | 0.26305 (6) | 0.56135 (18) | 0.04015 (12) | 0.0095 (3) | |
C9 | 0.26076 (7) | 0.5380 (2) | −0.06858 (12) | 0.0105 (3) | |
H9A | 0.2901 | 0.5919 | −0.1140 | 0.013* | |
C10 | 0.21417 (7) | 0.43328 (18) | −0.10826 (11) | 0.0121 (3) | |
H10A | 0.2116 | 0.4147 | −0.1818 | 0.015* | |
C11 | 0.17109 (7) | 0.35526 (17) | −0.04071 (12) | 0.0110 (3) | |
H11A | 0.1385 | 0.2857 | −0.0673 | 0.013* | |
C12 | 0.17748 (6) | 0.38260 (17) | 0.06599 (12) | 0.0097 (2) | |
C13 | 0.30969 (6) | 0.66803 (17) | 0.10021 (12) | 0.0101 (3) | |
C14 | 0.14033 (7) | 0.29812 (17) | 0.15243 (12) | 0.0108 (3) | |
N3 | 0.54006 (6) | 0.43977 (15) | 0.30200 (10) | 0.0123 (2) | |
H3B | 0.5651 | 0.5201 | 0.3289 | 0.018* | |
H3C | 0.5010 | 0.4809 | 0.2837 | 0.018* | |
H3D | 0.5595 | 0.3971 | 0.2442 | 0.018* | |
N4 | 0.44676 (5) | 0.16524 (15) | 0.27970 (10) | 0.0118 (2) | |
H4B | 0.4502 | 0.2393 | 0.2270 | 0.018* | |
H4C | 0.4162 | 0.1982 | 0.3263 | 0.018* | |
H4D | 0.4354 | 0.0676 | 0.2523 | 0.018* | |
C15 | 0.53120 (7) | 0.31041 (17) | 0.38271 (12) | 0.0130 (3) | |
H15A | 0.4983 | 0.3459 | 0.4340 | 0.016* | |
H15B | 0.5722 | 0.2949 | 0.4212 | 0.016* | |
C16 | 0.51052 (7) | 0.14977 (17) | 0.33504 (12) | 0.0113 (2) | |
H16A | 0.5437 | 0.1154 | 0.2827 | 0.014* | |
C17 | 0.50526 (8) | 0.01962 (18) | 0.41937 (13) | 0.0174 (3) | |
H17A | 0.4940 | −0.0840 | 0.3866 | 0.026* | |
H17B | 0.4718 | 0.0499 | 0.4700 | 0.026* | |
H17C | 0.5466 | 0.0091 | 0.4558 | 0.026* | |
O1W | 0.42220 (5) | 0.59529 (14) | 0.30653 (9) | 0.0169 (2) | |
H1WA | 0.4295 | 0.6786 | 0.2735 | 0.020* | |
H1WB | 0.3837 | 0.5823 | 0.2945 | 0.020* | |
O2W | 0.06395 (6) | 0.74698 (19) | 0.13415 (10) | 0.0297 (3) | |
H2WA | 0.0821 | 0.6693 | 0.1612 | 0.036* | |
H2WB | 0.0882 | 0.7755 | 0.0867 | 0.036* | |
O3W | −0.03481 (5) | 0.15335 (15) | 0.09506 (9) | 0.0199 (2) | |
H3WA | 0.0027 | 0.1743 | 0.0800 | 0.024* | |
H3WB | −0.0520 | 0.1482 | 0.0372 | 0.024* | |
O4W | 0.44262 (5) | 0.86620 (13) | 0.18005 (9) | 0.0158 (2) | |
H4WA | 0.4731 | 0.8280 | 0.1474 | 0.019* | |
H4WB | 0.4180 | 0.8294 | 0.1357 | 0.019* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.00786 (7) | 0.01104 (7) | 0.00634 (7) | 0.00044 (6) | −0.00030 (7) | −0.00050 (7) |
O1 | 0.0097 (4) | 0.0146 (5) | 0.0125 (5) | 0.0032 (4) | −0.0006 (4) | 0.0011 (4) |
O2 | 0.0123 (4) | 0.0127 (5) | 0.0082 (5) | 0.0015 (4) | −0.0003 (4) | −0.0013 (4) |
O3 | 0.0121 (5) | 0.0174 (5) | 0.0097 (5) | 0.0037 (4) | −0.0006 (4) | 0.0003 (4) |
O4 | 0.0125 (5) | 0.0146 (5) | 0.0129 (5) | 0.0047 (4) | 0.0020 (4) | 0.0016 (4) |
O5 | 0.0110 (5) | 0.0154 (5) | 0.0121 (5) | −0.0025 (4) | 0.0019 (4) | −0.0005 (4) |
O6 | 0.0106 (5) | 0.0139 (5) | 0.0092 (5) | −0.0009 (4) | −0.0003 (4) | −0.0009 (4) |
O7 | 0.0115 (4) | 0.0165 (4) | 0.0081 (5) | −0.0015 (3) | 0.0002 (4) | 0.0010 (4) |
O8 | 0.0131 (5) | 0.0173 (5) | 0.0134 (5) | −0.0049 (4) | −0.0003 (4) | −0.0013 (4) |
N1 | 0.0095 (6) | 0.0079 (5) | 0.0080 (6) | −0.0005 (4) | −0.0004 (4) | −0.0014 (5) |
N2 | 0.0081 (5) | 0.0099 (5) | 0.0088 (6) | 0.0014 (4) | 0.0000 (5) | 0.0009 (5) |
C1 | 0.0084 (6) | 0.0083 (6) | 0.0095 (6) | −0.0008 (5) | −0.0002 (5) | 0.0010 (5) |
C2 | 0.0123 (6) | 0.0093 (6) | 0.0111 (7) | −0.0004 (5) | −0.0004 (5) | 0.0009 (5) |
C3 | 0.0136 (6) | 0.0122 (6) | 0.0080 (6) | −0.0017 (5) | 0.0010 (5) | −0.0003 (5) |
C4 | 0.0106 (6) | 0.0110 (6) | 0.0090 (6) | −0.0010 (5) | 0.0032 (5) | −0.0012 (5) |
C5 | 0.0074 (6) | 0.0098 (6) | 0.0094 (6) | −0.0007 (5) | 0.0001 (5) | 0.0019 (5) |
C6 | 0.0084 (6) | 0.0084 (6) | 0.0121 (6) | −0.0010 (4) | 0.0012 (5) | −0.0001 (5) |
C7 | 0.0090 (6) | 0.0102 (6) | 0.0114 (6) | −0.0010 (5) | −0.0005 (5) | 0.0012 (5) |
C8 | 0.0080 (6) | 0.0096 (6) | 0.0108 (7) | 0.0008 (5) | 0.0000 (5) | −0.0010 (5) |
C9 | 0.0135 (6) | 0.0098 (6) | 0.0081 (7) | 0.0006 (5) | 0.0003 (5) | 0.0022 (5) |
C10 | 0.0171 (7) | 0.0122 (6) | 0.0071 (6) | 0.0015 (5) | −0.0011 (5) | −0.0013 (5) |
C11 | 0.0112 (6) | 0.0105 (6) | 0.0112 (6) | 0.0007 (5) | −0.0015 (5) | −0.0004 (5) |
C12 | 0.0073 (6) | 0.0098 (6) | 0.0121 (6) | 0.0011 (5) | 0.0001 (5) | −0.0004 (5) |
C13 | 0.0083 (6) | 0.0096 (6) | 0.0125 (6) | 0.0015 (5) | −0.0007 (5) | −0.0010 (5) |
C14 | 0.0088 (6) | 0.0116 (6) | 0.0119 (6) | 0.0010 (5) | 0.0022 (5) | 0.0001 (5) |
N3 | 0.0108 (5) | 0.0121 (5) | 0.0141 (6) | −0.0006 (4) | −0.0012 (4) | −0.0033 (5) |
N4 | 0.0106 (5) | 0.0127 (5) | 0.0122 (6) | 0.0001 (4) | −0.0016 (4) | −0.0010 (4) |
C15 | 0.0127 (6) | 0.0143 (6) | 0.0119 (6) | −0.0011 (5) | −0.0011 (5) | −0.0020 (5) |
C16 | 0.0099 (6) | 0.0127 (6) | 0.0113 (6) | 0.0003 (5) | −0.0007 (5) | −0.0006 (5) |
C17 | 0.0204 (7) | 0.0153 (7) | 0.0164 (7) | 0.0027 (5) | −0.0024 (6) | 0.0026 (6) |
O1W | 0.0118 (5) | 0.0196 (5) | 0.0193 (6) | 0.0011 (4) | −0.0009 (4) | 0.0034 (4) |
O2W | 0.0140 (5) | 0.0595 (9) | 0.0155 (6) | −0.0035 (6) | −0.0019 (4) | 0.0121 (6) |
O3W | 0.0142 (5) | 0.0318 (6) | 0.0138 (5) | 0.0009 (5) | −0.0037 (4) | −0.0011 (5) |
O4W | 0.0139 (5) | 0.0171 (5) | 0.0163 (5) | −0.0014 (4) | −0.0006 (4) | −0.0047 (4) |
Ni1—N2 | 1.9668 (15) | C9—H9A | 0.9500 |
Ni1—N1 | 1.9698 (14) | C10—C11 | 1.398 (2) |
Ni1—O6 | 2.1178 (11) | C10—H10A | 0.9500 |
Ni1—O7 | 2.1273 (10) | C11—C12 | 1.383 (2) |
Ni1—O3 | 2.1324 (10) | C11—H11A | 0.9500 |
Ni1—O2 | 2.1477 (10) | C12—C14 | 1.514 (2) |
O1—C6 | 1.2483 (17) | N3—C15 | 1.4932 (19) |
O2—C6 | 1.2717 (18) | N3—H3B | 0.9100 |
O3—C7 | 1.2697 (18) | N3—H3C | 0.9100 |
O4—C7 | 1.2516 (17) | N3—H3D | 0.9100 |
O5—C13 | 1.2441 (18) | N4—C16 | 1.5048 (17) |
O6—C13 | 1.2754 (19) | N4—H4B | 0.9100 |
O7—C14 | 1.2655 (19) | N4—H4C | 0.9100 |
O8—C14 | 1.2498 (18) | N4—H4D | 0.9100 |
N1—C5 | 1.3340 (19) | C15—C16 | 1.5205 (19) |
N1—C1 | 1.3387 (19) | C15—H15A | 0.9900 |
N2—C12 | 1.335 (2) | C15—H15B | 0.9900 |
N2—C8 | 1.335 (2) | C16—C17 | 1.523 (2) |
C1—C2 | 1.384 (2) | C16—H16A | 1.0000 |
C1—C6 | 1.516 (2) | C17—H17A | 0.9800 |
C2—C3 | 1.397 (2) | C17—H17B | 0.9800 |
C2—H2A | 0.9500 | C17—H17C | 0.9800 |
C3—C4 | 1.393 (2) | O1W—H1WA | 0.8201 |
C3—H3A | 0.9500 | O1W—H1WB | 0.8200 |
C4—C5 | 1.389 (2) | O2W—H2WA | 0.8201 |
C4—H4A | 0.9500 | O2W—H2WB | 0.8198 |
C5—C7 | 1.5130 (19) | O3W—H3WA | 0.8200 |
C8—C9 | 1.398 (2) | O3W—H3WB | 0.8201 |
C8—C13 | 1.516 (2) | O4W—H4WA | 0.8201 |
C9—C10 | 1.392 (2) | O4W—H4WB | 0.8201 |
N2—Ni1—N1 | 176.17 (5) | C8—C9—H9A | 121.0 |
N2—Ni1—O6 | 77.83 (5) | C9—C10—C11 | 120.52 (14) |
N1—Ni1—O6 | 104.64 (5) | C9—C10—H10A | 119.7 |
N2—Ni1—O7 | 78.27 (5) | C11—C10—H10A | 119.7 |
N1—Ni1—O7 | 99.37 (5) | C12—C11—C10 | 117.85 (14) |
O6—Ni1—O7 | 155.96 (4) | C12—C11—H11A | 121.1 |
N2—Ni1—O3 | 98.99 (5) | C10—C11—H11A | 121.1 |
N1—Ni1—O3 | 77.94 (5) | N2—C12—C11 | 121.31 (14) |
O6—Ni1—O3 | 95.64 (4) | N2—C12—C14 | 112.42 (14) |
O7—Ni1—O3 | 90.55 (4) | C11—C12—C14 | 126.11 (13) |
N2—Ni1—O2 | 105.48 (5) | O5—C13—O6 | 126.37 (14) |
N1—Ni1—O2 | 77.70 (5) | O5—C13—C8 | 118.49 (13) |
O6—Ni1—O2 | 87.29 (4) | O6—C13—C8 | 115.14 (12) |
O7—Ni1—O2 | 96.66 (4) | O8—C14—O7 | 125.63 (14) |
O3—Ni1—O2 | 155.41 (4) | O8—C14—C12 | 118.02 (13) |
C6—O2—Ni1 | 114.09 (9) | O7—C14—C12 | 116.31 (12) |
C7—O3—Ni1 | 114.43 (9) | C15—N3—H3B | 109.5 |
C13—O6—Ni1 | 114.94 (9) | C15—N3—H3C | 109.5 |
C14—O7—Ni1 | 113.70 (9) | H3B—N3—H3C | 109.5 |
C5—N1—C1 | 121.44 (14) | C15—N3—H3D | 109.5 |
C5—N1—Ni1 | 118.86 (10) | H3B—N3—H3D | 109.5 |
C1—N1—Ni1 | 119.70 (10) | H3C—N3—H3D | 109.5 |
C12—N2—C8 | 121.75 (15) | C16—N4—H4B | 109.5 |
C12—N2—Ni1 | 118.82 (11) | C16—N4—H4C | 109.5 |
C8—N2—Ni1 | 119.39 (11) | H4B—N4—H4C | 109.5 |
N1—C1—C2 | 121.11 (14) | C16—N4—H4D | 109.5 |
N1—C1—C6 | 112.38 (13) | H4B—N4—H4D | 109.5 |
C2—C1—C6 | 126.50 (14) | H4C—N4—H4D | 109.5 |
C1—C2—C3 | 117.99 (14) | N3—C15—C16 | 112.62 (12) |
C1—C2—H2A | 121.0 | N3—C15—H15A | 109.1 |
C3—C2—H2A | 121.0 | C16—C15—H15A | 109.1 |
C4—C3—C2 | 120.40 (14) | N3—C15—H15B | 109.1 |
C4—C3—H3A | 119.8 | C16—C15—H15B | 109.1 |
C2—C3—H3A | 119.8 | H15A—C15—H15B | 107.8 |
C5—C4—C3 | 117.93 (13) | N4—C16—C15 | 111.16 (11) |
C5—C4—H4A | 121.0 | N4—C16—C17 | 109.06 (12) |
C3—C4—H4A | 121.0 | C15—C16—C17 | 110.80 (12) |
N1—C5—C4 | 121.13 (14) | N4—C16—H16A | 108.6 |
N1—C5—C7 | 113.07 (13) | C15—C16—H16A | 108.6 |
C4—C5—C7 | 125.70 (13) | C17—C16—H16A | 108.6 |
O1—C6—O2 | 125.06 (13) | C16—C17—H17A | 109.5 |
O1—C6—C1 | 118.90 (13) | C16—C17—H17B | 109.5 |
O2—C6—C1 | 116.03 (12) | H17A—C17—H17B | 109.5 |
O4—C7—O3 | 125.65 (13) | C16—C17—H17C | 109.5 |
O4—C7—C5 | 118.88 (13) | H17A—C17—H17C | 109.5 |
O3—C7—C5 | 115.46 (12) | H17B—C17—H17C | 109.5 |
N2—C8—C9 | 120.62 (14) | H1WA—O1W—H1WB | 101.2 |
N2—C8—C13 | 112.42 (13) | H2WA—O2W—H2WB | 104.5 |
C9—C8—C13 | 126.95 (13) | H3WA—O3W—H3WB | 102.4 |
C10—C9—C8 | 117.93 (14) | H4WA—O4W—H4WB | 89.5 |
C10—C9—H9A | 121.0 | ||
N2—Ni1—O2—C6 | 179.68 (10) | Ni1—N1—C5—C4 | −179.84 (10) |
N1—Ni1—O2—C6 | −2.52 (10) | C1—N1—C5—C7 | 176.61 (12) |
O6—Ni1—O2—C6 | 103.10 (10) | Ni1—N1—C5—C7 | −3.14 (16) |
O7—Ni1—O2—C6 | −100.70 (10) | C3—C4—C5—N1 | 0.7 (2) |
O3—Ni1—O2—C6 | 5.46 (16) | C3—C4—C5—C7 | −175.52 (13) |
N2—Ni1—O3—C7 | 173.26 (10) | Ni1—O2—C6—O1 | −175.13 (11) |
N1—Ni1—O3—C7 | −4.41 (10) | Ni1—O2—C6—C1 | 3.57 (15) |
O6—Ni1—O3—C7 | −108.21 (10) | N1—C1—C6—O1 | 175.89 (13) |
O7—Ni1—O3—C7 | 95.05 (10) | C2—C1—C6—O1 | −2.4 (2) |
O2—Ni1—O3—C7 | −12.39 (16) | N1—C1—C6—O2 | −2.89 (18) |
N2—Ni1—O6—C13 | −4.98 (10) | C2—C1—C6—O2 | 178.85 (14) |
N1—Ni1—O6—C13 | 178.04 (10) | Ni1—O3—C7—O4 | −177.39 (11) |
O7—Ni1—O6—C13 | 1.20 (16) | Ni1—O3—C7—C5 | 4.04 (15) |
O3—Ni1—O6—C13 | −102.99 (10) | N1—C5—C7—O4 | −179.55 (13) |
O2—Ni1—O6—C13 | 101.50 (10) | C4—C5—C7—O4 | −3.0 (2) |
N2—Ni1—O7—C14 | −6.39 (10) | N1—C5—C7—O3 | −0.87 (18) |
N1—Ni1—O7—C14 | 170.54 (10) | C4—C5—C7—O3 | 175.64 (13) |
O6—Ni1—O7—C14 | −12.55 (15) | C12—N2—C8—C9 | −1.7 (2) |
O3—Ni1—O7—C14 | 92.68 (10) | Ni1—N2—C8—C9 | 176.03 (11) |
O2—Ni1—O7—C14 | −110.88 (10) | C12—N2—C8—C13 | 179.89 (12) |
O6—Ni1—N1—C5 | 96.77 (11) | Ni1—N2—C8—C13 | −2.41 (16) |
O7—Ni1—N1—C5 | −84.54 (11) | N2—C8—C9—C10 | 1.3 (2) |
O3—Ni1—N1—C5 | 4.01 (11) | C13—C8—C9—C10 | 179.52 (14) |
O2—Ni1—N1—C5 | −179.38 (12) | C8—C9—C10—C11 | 0.3 (2) |
O6—Ni1—N1—C1 | −83.00 (12) | C9—C10—C11—C12 | −1.6 (2) |
O7—Ni1—N1—C1 | 95.70 (11) | C8—N2—C12—C11 | 0.3 (2) |
O3—Ni1—N1—C1 | −175.75 (12) | Ni1—N2—C12—C11 | −177.38 (10) |
O2—Ni1—N1—C1 | 0.86 (11) | C8—N2—C12—C14 | 175.92 (12) |
O6—Ni1—N2—C12 | −178.35 (11) | Ni1—N2—C12—C14 | −1.80 (16) |
O7—Ni1—N2—C12 | 4.21 (10) | C10—C11—C12—N2 | 1.3 (2) |
O3—Ni1—N2—C12 | −84.47 (11) | C10—C11—C12—C14 | −173.67 (13) |
O2—Ni1—N2—C12 | 97.96 (11) | Ni1—O6—C13—O5 | −174.76 (11) |
O6—Ni1—N2—C8 | 3.88 (10) | Ni1—O6—C13—C8 | 5.13 (15) |
O7—Ni1—N2—C8 | −173.56 (11) | N2—C8—C13—O5 | 177.84 (12) |
O3—Ni1—N2—C8 | 97.75 (11) | C9—C8—C13—O5 | −0.5 (2) |
O2—Ni1—N2—C8 | −79.81 (11) | N2—C8—C13—O6 | −2.06 (18) |
C5—N1—C1—C2 | −0.8 (2) | C9—C8—C13—O6 | 179.62 (14) |
Ni1—N1—C1—C2 | 179.00 (11) | Ni1—O7—C14—O8 | −174.94 (12) |
C5—N1—C1—C6 | −179.12 (12) | Ni1—O7—C14—C12 | 7.30 (15) |
Ni1—N1—C1—C6 | 0.63 (16) | N2—C12—C14—O8 | 178.05 (12) |
N1—C1—C2—C3 | 0.9 (2) | C11—C12—C14—O8 | −6.6 (2) |
C6—C1—C2—C3 | 179.00 (13) | N2—C12—C14—O7 | −4.02 (18) |
C1—C2—C3—C4 | −0.2 (2) | C11—C12—C14—O7 | 171.32 (14) |
C2—C3—C4—C5 | −0.6 (2) | N3—C15—C16—N4 | −61.32 (15) |
C1—N1—C5—C4 | −0.1 (2) | N3—C15—C16—C17 | 177.24 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O4W | 0.82 | 1.97 | 2.788 (2) | 173 |
O1W—H1WB···O2 | 0.82 | 2.47 | 3.109 (2) | 135 |
O1W—H1WB···O6 | 0.82 | 2.21 | 2.912 (2) | 144 |
O2W—H2WA···O3 | 0.82 | 2.21 | 2.759 (2) | 125 |
N3—H3B···O4i | 0.91 | 1.90 | 2.795 (2) | 168 |
N3—H3C···O1W | 0.91 | 1.91 | 2.763 (2) | 155 |
N3—H3D···O8ii | 0.91 | 1.88 | 2.783 (2) | 176 |
O2W—H2WB···O1iii | 0.82 | 2.07 | 2.849 (2) | 160 |
N4—H4B···O3Wii | 0.91 | 1.92 | 2.812 (2) | 165 |
N4—H4C···O1 | 0.91 | 1.92 | 2.813 (2) | 168 |
N4—H4D···O4Wiv | 0.91 | 1.91 | 2.777 (2) | 160 |
O3W—H3WA···O8 | 0.82 | 2.03 | 2.771 (2) | 149 |
O3W—H3WB···O4v | 0.82 | 1.99 | 2.787 (2) | 166 |
O4W—H4WA···O2Wi | 0.82 | 1.99 | 2.749 (2) | 153 |
O4W—H4WB···O5 | 0.82 | 1.90 | 2.712 (2) | 171 |
C10—H10A···O6vi | 0.95 | 2.54 | 3.289 (2) | 136 |
C11—H11A···O1Wvi | 0.95 | 2.58 | 3.484 (2) | 160 |
C15—H15B···O5vii | 0.99 | 2.30 | 3.268 (2) | 164 |
C16—H16A···O7ii | 1.00 | 2.49 | 3.291 (2) | 137 |
Symmetry codes: (i) x+1/2, −y+3/2, z; (ii) x+1/2, −y+1/2, z; (iii) −x+1/2, y+1/2, z−1/2; (iv) x, y−1, z; (v) −x, −y+1, z−1/2; (vi) −x+1/2, y−1/2, z−1/2; (vii) −x+1, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | (C3H12N2)[Ni(C7H3NO4)2]·4H2O |
Mr | 537.13 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 100 |
a, b, c (Å) | 20.7598 (6), 8.2582 (2), 12.7242 (4) |
V (Å3) | 2181.42 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.96 |
Crystal size (mm) | 0.26 × 0.22 × 0.11 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.781, 0.898 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 36654, 6379, 6016 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.023, 0.059, 1.01 |
No. of reflections | 6379 |
No. of parameters | 310 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.34, −0.33 |
Absolute structure | Flack (1983), with how many Friedel pairs? |
Absolute structure parameter | 0.004 (7) |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O4W | 0.82 | 1.97 | 2.788 (2) | 173 |
O1W—H1WB···O2 | 0.82 | 2.47 | 3.109 (2) | 135 |
O1W—H1WB···O6 | 0.82 | 2.21 | 2.912 (2) | 144 |
O2W—H2WA···O3 | 0.82 | 2.21 | 2.759 (2) | 125 |
N3—H3B···O4i | 0.91 | 1.90 | 2.795 (2) | 168 |
N3—H3C···O1W | 0.91 | 1.91 | 2.763 (2) | 155 |
N3—H3D···O8ii | 0.91 | 1.88 | 2.783 (2) | 176 |
O2W—H2WB···O1iii | 0.82 | 2.07 | 2.849 (2) | 160 |
N4—H4B···O3Wii | 0.91 | 1.92 | 2.812 (2) | 165 |
N4—H4C···O1 | 0.91 | 1.92 | 2.813 (2) | 168 |
N4—H4D···O4Wiv | 0.91 | 1.91 | 2.777 (2) | 160 |
O3W—H3WA···O8 | 0.82 | 2.03 | 2.771 (2) | 149 |
O3W—H3WB···O4v | 0.82 | 1.99 | 2.787 (2) | 166 |
O4W—H4WA···O2Wi | 0.82 | 1.99 | 2.749 (2) | 153 |
O4W—H4WB···O5 | 0.82 | 1.90 | 2.712 (2) | 171 |
C10—H10A···O6vi | 0.95 | 2.54 | 3.289 (2) | 136 |
C11—H11A···O1Wvi | 0.95 | 2.58 | 3.484 (2) | 160 |
C15—H15B···O5vii | 0.99 | 2.30 | 3.268 (2) | 164 |
C16—H16A···O7ii | 1.00 | 2.49 | 3.291 (2) | 137 |
Symmetry codes: (i) x+1/2, −y+3/2, z; (ii) x+1/2, −y+1/2, z; (iii) −x+1/2, y+1/2, z−1/2; (iv) x, y−1, z; (v) −x, −y+1, z−1/2; (vi) −x+1/2, y−1/2, z−1/2; (vii) −x+1, −y+1, z+1/2. |
Recently, we have defined a plan to prepare water soluble proton transfer compounds as novel self-assembled systems that can function as suitable ligands in the synthesis of metal complexes. In this regard, we have reported cases in which proton transfers from pyridine-2,6-dicarboxylic acid (pydcH2), and benzene-1,2,4,5-tetracarboxylic acid (btcH4), to propane-1,3-diamine (pda), propane-1,2-diamine (p-1,2-da) and 1,10-phenanthroline, (phen). This work has resulted in the formation of some novel proton transfer compounds such as (pdaH2)(pydc).(pydcH2).2.5H2O (Aghabozorg, Ghadermazi & Ramezanipour, 2006), (pdaH2)2(btc).2H2O (Aghabozorg et al., 2007), (p-1,2-daH2)(pydcH)2.2H2O (Aghabozorg, Heidari et al., 2008) and (phenH)4(btcH3)2(btcH2) (Aghabozorg, Ghadermazi & Attar Gharamaleki, 2006). For more details and related literature see our recent review article (Aghabozorg, Manteghi & Sheshmani, 2008).
The molecular structure and crystal packing diagram of the title compound are presented in Figs. 1 and 2, respectively. The NiII atom is six-coordinated by two pyridine-2,6-dicarboxylate, or (pydc)2-, groups, i.e. each (pydc)2- ligand is coordinated through one pyridine N atom and two carboxylate O atoms. As it can be seen, atoms N1 and N2 of the two (pydc)2- fragments occupy the axial positions, while atoms O2, O3, O6 and O7 form the equatorial plane [with Ni—O distances ranging from 2.1178 (11) to 2.1477 (10) Å]. The N1—Ni1—N2 angle [176.17 (5)°] deviates from linearity. Therefore, the geometry of the resulting NiN2O4 coordination can be described as distorted octahedral. The O2—Ni1—O6 and O3—Ni1—O7 bond angles are equal to 87.26 (4)° and 90.55 (4)°, respectively. On the other hand, the torsion angles O3—Ni1—O7—C14 and O7—Ni1—O3—C7 are 92.68 (10)° and 95.05 (10)°, respectively, indicating that the two (pydc)2- units are almost perpendicular to one another. The O2—Ni1—O3 [155.41 (4)°] and O6—Ni1—O7 [155.96 (4)°] bond angles indicate that the four carboxylate groups of the two dianions are oriented in a flattened tetrahedral arrangement around the Ni1 atom.
It is interesting to note that the crystal packing shows a layered structure. The space between the layers of [Ni(pydc)2]2- units is occupied by (p-1,2-daH2)2+ cations and uncoordinated water molecules, which bridge the [Ni(pydc)2]2- units via hydrogen bonds (Fig 3 and Table 1). A noticeable feature of the title compound is the presence of C═O···π stacking interactions, between C═O groups of the carboxylate with aromatic rings of pyridine-2,6-dicarboxylate, with O···π distances of 3.1563 (12) Å for C13–O5···Cg1 (1/2 - x, 1/2 + y, -1/2 + z) and 3.2523 (12) Å for C6–O1···Cg2 (1/2 - x, -1/2 + y, 1/2 + z) [Cg1 and Cg2 are the centroids of the rings N1/C1–C5 and N2/C8–C12, respectively]. There is also considerable π–π stacking interactions between the two aromatic rings of the (pydc)2- units, with a centorid–centroid distance of 3.4825 (8) Å (1/2 - x, -1/2 + y, -1/2 + z) [see Fig. 4]. In the crystal structure, a wide range of non-covalent interactions consisting of hydrogen bonding (of the type O—H···O, N—H···O and C—H···O with D···A ranging from 2.712 (2) Å to 3.484 (2) Å), ion pairing, π···π and C═ O···π stacking connect the various components to form a supramolecular structure.