



Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S160053681001490X/su2174sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S160053681001490X/su2174Isup2.hkl |
CCDC reference: 778061
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean
(C-C) = 0.003 Å
- R factor = 0.044
- wR factor = 0.111
- Data-to-parameter ratio = 12.9
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 1 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 15 PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 27
Alert level G PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 1 PLAT128_ALERT_4_G Non-standard setting of Space-group P21/c .... P21/n
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
2-Hydroxy-1-naphthyaldehyde (0.1 mmol, 17.2 mg) and 2-nitrobenzohydrazide (0.1 mmol, 18.1 mg) in 30 ml of methanol were refluxed for 30 min to give a clear colourless solution. Colourless block-shaped single crystals of the title compound were formed by slow evaporation of the solvent over several days at room temperature.
Hydrogen atom H2 was located in a difference Fourier map and refined isotropically, with the N—H distance restrained to 0.90 (1)Å, and Uiso(H) restrained to 0.08 Å2. The other H-atoms were included in calculated positions and treated as riding atoms: d(C—H) = 0.93 Å, d(O—H) = 0.82 Å with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O).
Schiff base compounds are a class of important materials used as pharmaceuticals and in various medicinal fields of interest (Dao et al., 2000; Sriram et al., 2006; Karthikeyan et al., 2006). Schiff bases have also been used as versatile ligands in coordination chemistry (Ali et al., 2008; Kargar et al., 2009; Yeap et al., 2009). Recently, the crystal structures of a large number of new Schiff base compounds have been reported (Fun et al., 2009; Nadeem et al., 2009; Eltayeb et al., 2008). As a continuation of our work on such compounds (Hao, 2009a,b,c,d) we report herein on the crystal structure of a new title Schiff base compound, prepared by the reaction of 2-hydroxy-1-naphthyaldehyde with 2-nitrobenzohydrazide.
The molecular structure of the title compound is illustrated in Fig. 1. In the molecule there is an intramolecular O—H···N hydrogen bond, involving the naphthalene hydroxyl substituent and the hydrazide N-atom (Fig.1 and Table 1). The molecule is twisted with the dihedral angle between the benzene and the naphthyl ring mean planes being 23.0 (2)°. All the bond lengths are within normal values (Allen et al., 1987).
In the crystal structure, symmetry related molecules are linked through intermolecular N—H···O hydrogen bonds, forming chains propagating in [101] (see Table 1 and Fig. 2).
For the pharmaceutical and medicinal activity of Schiff bases, see: Dao et al. (2000); Sriram et al. (2006); Karthikeyan et al. (2006). For the coordination chemistry of Schiff bases, see: Ali et al. (2008); Kargar et al. (2009); Yeap et al. (2009). For the crystal structures of Schiff base compounds, see: Fun et al. (2009); Nadeem et al. (2009); Eltayeb et al. (2008). For Schiff base compounds reported by the author, see: Hao (2009a,b,c,d). For reference structural data, see: Allen et al. (1987).
Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
C18H13N3O4 | F(000) = 696 |
Mr = 335.31 | Dx = 1.434 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1415 reflections |
a = 7.4473 (6) Å | θ = 2.6–24.5° |
b = 29.068 (2) Å | µ = 0.10 mm−1 |
c = 7.8504 (6) Å | T = 298 K |
β = 113.963 (4)° | Block, colourless |
V = 1553.0 (2) Å3 | 0.30 × 0.28 × 0.27 mm |
Z = 4 |
Bruker SMART CCD area detector diffractometer | 2972 independent reflections |
Radiation source: fine-focus sealed tube | 1856 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
ω scans | θmax = 25.9°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→9 |
Tmin = 0.970, Tmax = 0.973 | k = −35→30 |
8499 measured reflections | l = −9→9 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.111 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0464P)2 + 0.0232P] where P = (Fo2 + 2Fc2)/3 |
2972 reflections | (Δ/σ)max < 0.001 |
230 parameters | Δρmax = 0.16 e Å−3 |
1 restraint | Δρmin = −0.22 e Å−3 |
C18H13N3O4 | V = 1553.0 (2) Å3 |
Mr = 335.31 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.4473 (6) Å | µ = 0.10 mm−1 |
b = 29.068 (2) Å | T = 298 K |
c = 7.8504 (6) Å | 0.30 × 0.28 × 0.27 mm |
β = 113.963 (4)° |
Bruker SMART CCD area detector diffractometer | 2972 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1856 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.973 | Rint = 0.038 |
8499 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 1 restraint |
wR(F2) = 0.111 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.16 e Å−3 |
2972 reflections | Δρmin = −0.22 e Å−3 |
230 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.9372 (2) | 0.21679 (5) | 0.1587 (2) | 0.0397 (4) | |
N2 | 0.8992 (2) | 0.24623 (5) | 0.0095 (2) | 0.0391 (4) | |
N3 | 0.8947 (3) | 0.38594 (6) | 0.0264 (2) | 0.0484 (5) | |
O1 | 0.9712 (2) | 0.20162 (5) | 0.49534 (18) | 0.0565 (4) | |
H1 | 0.9752 | 0.2167 | 0.4087 | 0.085* | |
O2 | 1.1317 (2) | 0.29693 (4) | 0.18479 (17) | 0.0468 (4) | |
O3 | 0.8562 (2) | 0.36371 (5) | 0.1378 (2) | 0.0621 (5) | |
O4 | 0.9318 (3) | 0.42719 (5) | 0.0425 (2) | 0.0876 (6) | |
C1 | 0.8835 (3) | 0.14285 (6) | 0.2610 (3) | 0.0380 (5) | |
C2 | 0.9240 (3) | 0.15757 (6) | 0.4402 (3) | 0.0411 (5) | |
C3 | 0.9145 (3) | 0.12727 (7) | 0.5760 (3) | 0.0517 (6) | |
H3 | 0.9385 | 0.1380 | 0.6949 | 0.062* | |
C4 | 0.8703 (3) | 0.08250 (8) | 0.5329 (3) | 0.0570 (6) | |
H4 | 0.8643 | 0.0628 | 0.6236 | 0.068* | |
C5 | 0.8329 (3) | 0.06477 (7) | 0.3541 (3) | 0.0506 (6) | |
C6 | 0.7861 (4) | 0.01817 (8) | 0.3104 (4) | 0.0742 (8) | |
H6 | 0.7802 | −0.0016 | 0.4012 | 0.089* | |
C7 | 0.7492 (5) | 0.00153 (8) | 0.1374 (4) | 0.0952 (10) | |
H7 | 0.7182 | −0.0294 | 0.1101 | 0.114* | |
C8 | 0.7582 (4) | 0.03098 (8) | 0.0022 (4) | 0.0897 (9) | |
H8 | 0.7343 | 0.0195 | −0.1156 | 0.108* | |
C9 | 0.8014 (4) | 0.07638 (7) | 0.0383 (3) | 0.0661 (7) | |
H9 | 0.8057 | 0.0954 | −0.0553 | 0.079* | |
C10 | 0.8398 (3) | 0.09508 (6) | 0.2155 (3) | 0.0439 (5) | |
C11 | 0.8723 (3) | 0.17566 (6) | 0.1180 (3) | 0.0402 (5) | |
H11 | 0.8167 | 0.1666 | −0.0063 | 0.048* | |
C12 | 0.9971 (3) | 0.28614 (6) | 0.0366 (2) | 0.0348 (4) | |
C13 | 0.9339 (3) | 0.31554 (6) | −0.1353 (2) | 0.0331 (4) | |
C14 | 0.8952 (3) | 0.36234 (6) | −0.1387 (2) | 0.0352 (5) | |
C15 | 0.8493 (3) | 0.38854 (7) | −0.2967 (3) | 0.0479 (5) | |
H15 | 0.8260 | 0.4199 | −0.2947 | 0.057* | |
C16 | 0.8383 (3) | 0.36763 (7) | −0.4579 (3) | 0.0528 (6) | |
H16 | 0.8061 | 0.3849 | −0.5660 | 0.063* | |
C17 | 0.8747 (3) | 0.32149 (7) | −0.4602 (3) | 0.0487 (6) | |
H17 | 0.8671 | 0.3076 | −0.5696 | 0.058* | |
C18 | 0.9226 (3) | 0.29568 (6) | −0.3002 (2) | 0.0406 (5) | |
H18 | 0.9478 | 0.2644 | −0.3029 | 0.049* | |
H2 | 0.808 (3) | 0.2378 (7) | −0.1025 (18) | 0.080* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0456 (10) | 0.0343 (9) | 0.0344 (9) | −0.0023 (8) | 0.0112 (8) | 0.0062 (7) |
N2 | 0.0450 (10) | 0.0332 (9) | 0.0301 (9) | −0.0065 (8) | 0.0061 (8) | 0.0051 (7) |
N3 | 0.0534 (12) | 0.0479 (11) | 0.0422 (11) | 0.0055 (9) | 0.0176 (9) | −0.0051 (9) |
O1 | 0.0807 (12) | 0.0454 (9) | 0.0459 (9) | −0.0007 (8) | 0.0283 (9) | −0.0018 (7) |
O2 | 0.0517 (9) | 0.0414 (8) | 0.0320 (7) | −0.0067 (7) | 0.0014 (7) | 0.0027 (6) |
O3 | 0.0759 (12) | 0.0751 (11) | 0.0434 (9) | 0.0037 (9) | 0.0325 (9) | 0.0006 (8) |
O4 | 0.1449 (18) | 0.0426 (10) | 0.0877 (14) | −0.0041 (10) | 0.0601 (13) | −0.0203 (9) |
C1 | 0.0375 (12) | 0.0358 (11) | 0.0377 (11) | 0.0007 (9) | 0.0123 (9) | 0.0057 (9) |
C2 | 0.0415 (12) | 0.0365 (11) | 0.0443 (12) | 0.0048 (9) | 0.0165 (10) | 0.0045 (9) |
C3 | 0.0574 (15) | 0.0562 (14) | 0.0440 (13) | 0.0084 (11) | 0.0231 (11) | 0.0134 (11) |
C4 | 0.0537 (15) | 0.0567 (15) | 0.0612 (16) | 0.0096 (11) | 0.0241 (13) | 0.0288 (12) |
C5 | 0.0436 (13) | 0.0421 (12) | 0.0598 (15) | 0.0019 (10) | 0.0145 (11) | 0.0140 (11) |
C6 | 0.0713 (18) | 0.0451 (14) | 0.088 (2) | −0.0054 (13) | 0.0132 (15) | 0.0221 (13) |
C7 | 0.121 (3) | 0.0380 (14) | 0.097 (2) | −0.0154 (15) | 0.013 (2) | −0.0023 (15) |
C8 | 0.131 (3) | 0.0440 (15) | 0.0764 (18) | −0.0076 (16) | 0.0243 (18) | −0.0090 (14) |
C9 | 0.091 (2) | 0.0417 (13) | 0.0582 (16) | −0.0089 (12) | 0.0226 (14) | −0.0033 (11) |
C10 | 0.0407 (12) | 0.0372 (11) | 0.0481 (12) | 0.0010 (9) | 0.0120 (10) | 0.0063 (10) |
C11 | 0.0405 (12) | 0.0379 (11) | 0.0376 (11) | −0.0001 (9) | 0.0112 (9) | 0.0011 (9) |
C12 | 0.0373 (11) | 0.0350 (11) | 0.0291 (10) | 0.0008 (9) | 0.0104 (9) | −0.0013 (8) |
C13 | 0.0311 (10) | 0.0350 (10) | 0.0300 (10) | −0.0032 (8) | 0.0092 (8) | 0.0003 (8) |
C14 | 0.0366 (11) | 0.0366 (11) | 0.0303 (10) | −0.0017 (9) | 0.0115 (9) | −0.0032 (8) |
C15 | 0.0555 (14) | 0.0377 (11) | 0.0472 (13) | 0.0027 (10) | 0.0174 (11) | 0.0089 (10) |
C16 | 0.0670 (16) | 0.0523 (14) | 0.0358 (12) | −0.0011 (11) | 0.0176 (11) | 0.0114 (10) |
C17 | 0.0616 (15) | 0.0537 (13) | 0.0313 (12) | −0.0040 (11) | 0.0193 (11) | −0.0034 (10) |
C18 | 0.0470 (13) | 0.0376 (11) | 0.0350 (11) | −0.0022 (9) | 0.0145 (10) | −0.0023 (9) |
N1—C11 | 1.281 (2) | C6—C7 | 1.360 (3) |
N1—N2 | 1.3838 (19) | C6—H6 | 0.9300 |
N2—C12 | 1.341 (2) | C7—C8 | 1.386 (4) |
N2—H2 | 0.899 (9) | C7—H7 | 0.9300 |
N3—O3 | 1.212 (2) | C8—C9 | 1.360 (3) |
N3—O4 | 1.225 (2) | C8—H8 | 0.9300 |
N3—C14 | 1.468 (2) | C9—C10 | 1.411 (3) |
O1—C2 | 1.352 (2) | C9—H9 | 0.9300 |
O1—H1 | 0.8200 | C11—H11 | 0.9300 |
O2—C12 | 1.229 (2) | C12—C13 | 1.502 (2) |
C1—C2 | 1.381 (2) | C13—C18 | 1.388 (2) |
C1—C10 | 1.438 (2) | C13—C14 | 1.389 (2) |
C1—C11 | 1.449 (2) | C14—C15 | 1.375 (2) |
C2—C3 | 1.407 (3) | C15—C16 | 1.376 (3) |
C3—C4 | 1.351 (3) | C15—H15 | 0.9300 |
C3—H3 | 0.9300 | C16—C17 | 1.370 (3) |
C4—C5 | 1.413 (3) | C16—H16 | 0.9300 |
C4—H4 | 0.9300 | C17—C18 | 1.380 (3) |
C5—C6 | 1.406 (3) | C17—H17 | 0.9300 |
C5—C10 | 1.417 (3) | C18—H18 | 0.9300 |
C11—N1—N2 | 116.07 (15) | C7—C8—H8 | 119.3 |
C12—N2—N1 | 119.34 (15) | C8—C9—C10 | 121.0 (2) |
C12—N2—H2 | 122.4 (14) | C8—C9—H9 | 119.5 |
N1—N2—H2 | 118.3 (14) | C10—C9—H9 | 119.5 |
O3—N3—O4 | 123.87 (18) | C9—C10—C5 | 117.49 (19) |
O3—N3—C14 | 118.30 (17) | C9—C10—C1 | 123.50 (18) |
O4—N3—C14 | 117.83 (18) | C5—C10—C1 | 119.01 (18) |
C2—O1—H1 | 109.5 | N1—C11—C1 | 121.60 (17) |
C2—C1—C10 | 119.08 (17) | N1—C11—H11 | 119.2 |
C2—C1—C11 | 120.32 (17) | C1—C11—H11 | 119.2 |
C10—C1—C11 | 120.47 (17) | O2—C12—N2 | 123.57 (16) |
O1—C2—C1 | 122.73 (17) | O2—C12—C13 | 122.88 (16) |
O1—C2—C3 | 115.90 (17) | N2—C12—C13 | 113.46 (16) |
C1—C2—C3 | 121.36 (18) | C18—C13—C14 | 117.16 (16) |
C4—C3—C2 | 119.7 (2) | C18—C13—C12 | 118.64 (16) |
C4—C3—H3 | 120.2 | C14—C13—C12 | 124.12 (16) |
C2—C3—H3 | 120.2 | C15—C14—C13 | 122.20 (17) |
C3—C4—C5 | 122.0 (2) | C15—C14—N3 | 116.68 (17) |
C3—C4—H4 | 119.0 | C13—C14—N3 | 121.09 (16) |
C5—C4—H4 | 119.0 | C14—C15—C16 | 119.03 (19) |
C6—C5—C4 | 121.5 (2) | C14—C15—H15 | 120.5 |
C6—C5—C10 | 119.6 (2) | C16—C15—H15 | 120.5 |
C4—C5—C10 | 118.81 (19) | C17—C16—C15 | 120.40 (19) |
C7—C6—C5 | 121.0 (2) | C17—C16—H16 | 119.8 |
C7—C6—H6 | 119.5 | C15—C16—H16 | 119.8 |
C5—C6—H6 | 119.5 | C16—C17—C18 | 120.01 (19) |
C6—C7—C8 | 119.5 (2) | C16—C17—H17 | 120.0 |
C6—C7—H7 | 120.3 | C18—C17—H17 | 120.0 |
C8—C7—H7 | 120.3 | C17—C18—C13 | 121.19 (18) |
C9—C8—C7 | 121.4 (3) | C17—C18—H18 | 119.4 |
C9—C8—H8 | 119.3 | C13—C18—H18 | 119.4 |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.82 | 1.87 | 2.5881 (18) | 146 |
N2—H2···O2i | 0.90 (1) | 1.94 (1) | 2.8133 (19) | 164 (2) |
Symmetry code: (i) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C18H13N3O4 |
Mr | 335.31 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 7.4473 (6), 29.068 (2), 7.8504 (6) |
β (°) | 113.963 (4) |
V (Å3) | 1553.0 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.30 × 0.28 × 0.27 |
Data collection | |
Diffractometer | Bruker SMART CCD area detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.970, 0.973 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8499, 2972, 1856 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.614 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.111, 1.05 |
No. of reflections | 2972 |
No. of parameters | 230 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.16, −0.22 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.82 | 1.87 | 2.5881 (18) | 146 |
N2—H2···O2i | 0.899 (9) | 1.938 (11) | 2.8133 (19) | 164 (2) |
Symmetry code: (i) x−1/2, −y+1/2, z−1/2. |
Schiff base compounds are a class of important materials used as pharmaceuticals and in various medicinal fields of interest (Dao et al., 2000; Sriram et al., 2006; Karthikeyan et al., 2006). Schiff bases have also been used as versatile ligands in coordination chemistry (Ali et al., 2008; Kargar et al., 2009; Yeap et al., 2009). Recently, the crystal structures of a large number of new Schiff base compounds have been reported (Fun et al., 2009; Nadeem et al., 2009; Eltayeb et al., 2008). As a continuation of our work on such compounds (Hao, 2009a,b,c,d) we report herein on the crystal structure of a new title Schiff base compound, prepared by the reaction of 2-hydroxy-1-naphthyaldehyde with 2-nitrobenzohydrazide.
The molecular structure of the title compound is illustrated in Fig. 1. In the molecule there is an intramolecular O—H···N hydrogen bond, involving the naphthalene hydroxyl substituent and the hydrazide N-atom (Fig.1 and Table 1). The molecule is twisted with the dihedral angle between the benzene and the naphthyl ring mean planes being 23.0 (2)°. All the bond lengths are within normal values (Allen et al., 1987).
In the crystal structure, symmetry related molecules are linked through intermolecular N—H···O hydrogen bonds, forming chains propagating in [101] (see Table 1 and Fig. 2).