Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2414314619007880/tk4058sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2414314619007880/tk4058Isup2.hkl | |
Chemdraw file https://doi.org/10.1107/S2414314619007880/tk4058Isup3.cdx | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S2414314619007880/tk4058Isup4.cml |
CCDC reference: 1920116
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.026 Å
- R factor = 0.080
- wR factor = 0.223
- Data-to-parameter ratio = 14.1
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT342_ALERT_3_B Low Bond Precision on C-C Bonds ............... 0.02615 Ang. PLAT971_ALERT_2_B Check Calcd Resid. Dens. 1.04A From I1 2.79 eA-3
Alert level C STRVA01_ALERT_4_C Flack test results are ambiguous. From the CIF: _refine_ls_abs_structure_Flack 0.530 From the CIF: _refine_ls_abs_structure_Flack_su 0.130 PLAT090_ALERT_3_C Poor Data / Parameter Ratio (Zmax > 18) ........ 7.84 Note PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.37 Report PLAT213_ALERT_2_C Atom C5 has ADP max/min Ratio ..... 3.9 oblate PLAT241_ALERT_2_C High 'MainMol' Ueq as Compared to Neighbors of C12 Check PLAT411_ALERT_2_C Short Inter H...H Contact H10 ..H11 . 2.11 Ang. 1-x,2-y,-1/2+z = 2_674 Check PLAT906_ALERT_3_C Large K Value in the Analysis of Variance ...... 2.951 Check PLAT907_ALERT_2_C Flack x > 0.5, Structure Needs to be Inverted? . 0.53 Check PLAT918_ALERT_3_C Reflection(s) with I(obs) much Smaller I(calc) . 4 Check PLAT971_ALERT_2_C Check Calcd Resid. Dens. 0.88A From I1 2.30 eA-3
Alert level G PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 12 Note PLAT003_ALERT_2_G Number of Uiso or Uij Restrained non-H Atoms ... 8 Report PLAT007_ALERT_5_G Number of Unrefined Donor-H Atoms .............. 1 Report PLAT072_ALERT_2_G SHELXL First Parameter in WGHT Unusually Large 0.13 Report PLAT083_ALERT_2_G SHELXL Second Parameter in WGHT Unusually Large 10.53 Why ? PLAT172_ALERT_4_G The CIF-Embedded .res File Contains DFIX Records 2 Report PLAT186_ALERT_4_G The CIF-Embedded .res File Contains ISOR Records 1 Report PLAT187_ALERT_4_G The CIF-Embedded .res File Contains RIGU Records 2 Report PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 148 Note PLAT909_ALERT_3_G Percentage of I>2sig(I) Data at Theta(Max) Still 99% Note PLAT910_ALERT_3_G Missing # of FCF Reflection(s) Below Theta(Min). 3 Note PLAT913_ALERT_3_G Missing # of Very Strong Reflections in FCF .... 1 Note PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 1 Info
0 ALERT level A = Most likely a serious problem - resolve or explain 2 ALERT level B = A potentially serious problem, consider carefully 10 ALERT level C = Check. Ensure it is not caused by an omission or oversight 13 ALERT level G = General information/check it is not something unexpected 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 12 ALERT type 2 Indicator that the structure model may be wrong or deficient 8 ALERT type 3 Indicator that the structure quality may be low 4 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
Data collection: APEX3 (Bruker, 2016); cell refinement: APEX3 and SAINT (Bruker, 2016); data reduction: SAINT and XPREP (Bruker, 2016); program(s) used to solve structure: SHELXT2018/2 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018/3 (Sheldrick, 2015b); molecular graphics: DIAMOND (Brandenburg & Putz, 2018); software used to prepare material for publication: SHELXL2018/3 (Sheldrick, 2015b), PLATON (Spek, 2009) and publCIF (Westrip, 2010).
C13H10INO | Dx = 1.830 Mg m−3 |
Mr = 323.12 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pca21 | Cell parameters from 9900 reflections |
a = 7.0848 (8) Å | θ = 2.9–30.8° |
b = 26.422 (3) Å | µ = 2.71 mm−1 |
c = 6.2664 (7) Å | T = 296 K |
V = 1173.1 (2) Å3 | Plate, orange |
Z = 4 | 0.30 × 0.25 × 0.15 mm |
F(000) = 624 |
Bruker Kappa APEX3 CMOS diffractometer | 2057 independent reflections |
Radiation source: fine-focus sealed tube | 2043 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.055 |
ω and φ scan | θmax = 25.0°, θmin = 3.0° |
Absorption correction: multi-scan (SADABS; Krause et al., 2015) | h = −8→8 |
Tmin = 0.287, Tmax = 0.746 | k = −31→31 |
13051 measured reflections | l = −7→7 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.080 | w = 1/[σ2(Fo2) + (0.1256P)2 + 10.5304P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.223 | (Δ/σ)max < 0.001 |
S = 1.18 | Δρmax = 2.90 e Å−3 |
2057 reflections | Δρmin = −1.22 e Å−3 |
146 parameters | Absolute structure: Refined as an inversion twin. |
148 restraints | Absolute structure parameter: 0.53 (13) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refined as a two-component inversion twin. C-bound H atoms were placed in geometrically idealized positions with C—H = 0.93 Å. The OH H1 atom was placed geometrically with O—H = 0.82 Å. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.528 (2) | 0.7086 (7) | 0.466 (3) | 0.036 (3) | |
C2 | 0.557 (2) | 0.6640 (6) | 0.586 (3) | 0.031 (3) | |
H2 | 0.598694 | 0.666661 | 0.725680 | 0.038* | |
C3 | 0.526 (2) | 0.6174 (6) | 0.503 (2) | 0.027 (3) | |
C4 | 0.461 (2) | 0.6133 (7) | 0.289 (3) | 0.035 (4) | |
H4 | 0.439214 | 0.581274 | 0.232509 | 0.042* | |
C5 | 0.429 (2) | 0.6565 (6) | 0.1556 (19) | 0.034 (4) | |
H5 | 0.388597 | 0.653661 | 0.015024 | 0.040* | |
C6 | 0.465 (2) | 0.7045 (7) | 0.255 (2) | 0.035 (3) | |
C7 | 0.551 (2) | 0.7588 (8) | 0.554 (4) | 0.044 (4) | |
H7 | 0.595451 | 0.760351 | 0.693338 | 0.053* | |
N1 | 0.5206 (18) | 0.7982 (6) | 0.470 (3) | 0.038 (3) | |
O1 | 0.445 (2) | 0.7439 (6) | 0.126 (3) | 0.063 (5) | |
H1 | 0.478128 | 0.769632 | 0.188944 | 0.095* | |
C8 | 0.516 (2) | 0.8464 (8) | 0.565 (3) | 0.043 (4) | |
C9 | 0.582 (3) | 0.8877 (6) | 0.444 (4) | 0.052 (5) | |
H9 | 0.627478 | 0.883081 | 0.305929 | 0.062* | |
C10 | 0.577 (4) | 0.9366 (9) | 0.538 (5) | 0.069 (7) | |
H10 | 0.628761 | 0.964479 | 0.468623 | 0.083* | |
C11 | 0.491 (3) | 0.9414 (7) | 0.738 (4) | 0.063 (6) | |
H11 | 0.482026 | 0.973329 | 0.799836 | 0.076* | |
C12 | 0.420 (4) | 0.9000 (8) | 0.847 (5) | 0.077 (7) | |
H12 | 0.363078 | 0.904559 | 0.979138 | 0.092* | |
C13 | 0.431 (2) | 0.8520 (7) | 0.760 (3) | 0.049 (5) | |
H13 | 0.382080 | 0.824147 | 0.831719 | 0.059* | |
I1 | 0.54634 (16) | 0.55120 (4) | 0.6950 (5) | 0.0477 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.036 (8) | 0.039 (6) | 0.034 (7) | −0.001 (5) | −0.011 (6) | 0.005 (5) |
C2 | 0.033 (8) | 0.034 (6) | 0.028 (7) | −0.005 (5) | −0.009 (6) | 0.000 (5) |
C3 | 0.026 (7) | 0.034 (6) | 0.021 (6) | −0.007 (5) | −0.008 (5) | −0.001 (5) |
C4 | 0.038 (9) | 0.043 (8) | 0.024 (6) | −0.004 (6) | −0.009 (6) | −0.001 (6) |
C5 | 0.044 (8) | 0.052 (7) | 0.004 (8) | 0.000 (6) | −0.005 (5) | −0.001 (5) |
C6 | 0.027 (7) | 0.045 (7) | 0.032 (7) | 0.002 (6) | −0.008 (5) | 0.000 (5) |
C7 | 0.038 (10) | 0.047 (6) | 0.047 (10) | −0.003 (6) | −0.010 (7) | −0.006 (5) |
N1 | 0.019 (6) | 0.051 (7) | 0.044 (8) | −0.002 (6) | −0.008 (6) | −0.001 (6) |
O1 | 0.074 (11) | 0.034 (8) | 0.082 (14) | 0.002 (7) | −0.015 (8) | 0.005 (7) |
C8 | 0.019 (7) | 0.054 (9) | 0.056 (10) | 0.004 (7) | −0.009 (7) | 0.015 (7) |
C9 | 0.043 (10) | 0.039 (7) | 0.074 (13) | 0.008 (7) | 0.028 (9) | −0.002 (7) |
C10 | 0.045 (11) | 0.052 (9) | 0.111 (17) | 0.002 (10) | 0.009 (12) | −0.027 (10) |
C11 | 0.044 (9) | 0.039 (8) | 0.106 (18) | 0.008 (7) | 0.003 (12) | −0.031 (9) |
C12 | 0.052 (12) | 0.058 (9) | 0.120 (18) | 0.009 (9) | 0.009 (12) | −0.012 (10) |
C13 | 0.020 (7) | 0.052 (8) | 0.074 (13) | −0.009 (7) | 0.014 (7) | 0.003 (7) |
I1 | 0.0529 (8) | 0.0357 (7) | 0.0545 (8) | 0.0010 (4) | −0.0052 (8) | 0.0067 (8) |
C1—C6 | 1.402 (18) | N1—C8 | 1.41 (3) |
C1—C2 | 1.412 (19) | O1—H1 | 0.8200 |
C1—C7 | 1.44 (3) | C8—C13 | 1.37 (2) |
C2—C3 | 1.353 (19) | C8—C9 | 1.41 (2) |
C2—H2 | 0.9300 | C9—C10 | 1.42 (2) |
C3—C4 | 1.421 (19) | C9—H9 | 0.9300 |
C3—I1 | 2.130 (16) | C10—C11 | 1.40 (2) |
C4—C5 | 1.431 (19) | C10—H10 | 0.9300 |
C4—H4 | 0.9300 | C11—C12 | 1.38 (2) |
C5—C6 | 1.433 (19) | C11—H11 | 0.9300 |
C5—H5 | 0.9300 | C12—C13 | 1.38 (2) |
C6—O1 | 1.32 (2) | C12—H12 | 0.9300 |
C7—N1 | 1.19 (3) | C13—H13 | 0.9300 |
C7—H7 | 0.9300 | ||
C6—C1—C2 | 118.9 (17) | C7—N1—C8 | 127.6 (19) |
C6—C1—C7 | 117.9 (17) | C6—O1—H1 | 109.5 |
C2—C1—C7 | 123.2 (16) | C13—C8—N1 | 119.1 (17) |
C3—C2—C1 | 122.1 (15) | C13—C8—C9 | 123 (2) |
C3—C2—H2 | 119.0 | N1—C8—C9 | 117.5 (17) |
C1—C2—H2 | 119.0 | C8—C9—C10 | 118 (2) |
C2—C3—C4 | 119.0 (15) | C8—C9—H9 | 120.9 |
C2—C3—I1 | 121.2 (11) | C10—C9—H9 | 120.9 |
C4—C3—I1 | 119.6 (12) | C11—C10—C9 | 118 (2) |
C3—C4—C5 | 122.7 (15) | C11—C10—H10 | 121.1 |
C3—C4—H4 | 118.7 | C9—C10—H10 | 121.1 |
C5—C4—H4 | 118.7 | C12—C11—C10 | 122 (2) |
C4—C5—C6 | 115.2 (13) | C12—C11—H11 | 119.1 |
C4—C5—H5 | 122.4 | C10—C11—H11 | 119.1 |
C6—C5—H5 | 122.4 | C13—C12—C11 | 121 (2) |
O1—C6—C1 | 123.1 (17) | C13—C12—H12 | 119.7 |
O1—C6—C5 | 114.5 (14) | C11—C12—H12 | 119.7 |
C1—C6—C5 | 122.2 (16) | C8—C13—C12 | 118 (2) |
N1—C7—C1 | 128 (2) | C8—C13—H13 | 120.8 |
N1—C7—H7 | 116.0 | C12—C13—H13 | 120.8 |
C1—C7—H7 | 116.0 | ||
C6—C1—C2—C3 | 0 (3) | C6—C1—C7—N1 | 1 (3) |
C7—C1—C2—C3 | 176.9 (17) | C2—C1—C7—N1 | −175.8 (19) |
C1—C2—C3—C4 | 0 (2) | C1—C7—N1—C8 | 169.5 (17) |
C1—C2—C3—I1 | −174.3 (13) | C7—N1—C8—C13 | −42 (3) |
C2—C3—C4—C5 | 0 (2) | C7—N1—C8—C9 | 145 (2) |
I1—C3—C4—C5 | 174.8 (13) | C13—C8—C9—C10 | 7 (3) |
C3—C4—C5—C6 | −1 (2) | N1—C8—C9—C10 | 180 (2) |
C2—C1—C6—O1 | −175.6 (16) | C8—C9—C10—C11 | −6 (4) |
C7—C1—C6—O1 | 7 (3) | C9—C10—C11—C12 | 2 (4) |
C2—C1—C6—C5 | 0 (3) | C10—C11—C12—C13 | 0 (4) |
C7—C1—C6—C5 | −177.3 (16) | N1—C8—C13—C12 | −177 (2) |
C4—C5—C6—O1 | 176.3 (16) | C9—C8—C13—C12 | −4 (3) |
C4—C5—C6—C1 | 1 (2) | C11—C12—C13—C8 | 1 (4) |
Cg1 and Cg2 are the centroids of the C1–C6 benzene ring and the C8–C13 phenyl ring, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.82 | 1.94 | 2.64 (2) | 143 |
C5—H5···Cg1i | 0.93 | 2.86 | 3.476 (15) | 125 |
C9—H9···Cg2ii | 0.93 | 2.81 | 3.48 (2) | 129 |
C12—H12···Cg2iii | 0.93 | 2.82 | 3.55 (3) | 136 |
Symmetry codes: (i) x+1/2, −y, z−1; (ii) x+3/2, −y, z−1; (iii) x+1/2, −y, z. |