Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270110029252/uk3023sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270110029252/uk3023Isup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270110029252/uk3023IIsup3.hkl |
CCDC references: 796075; 796076
Full synthetic procedures for the stepwise preparation of (I) and (II) from ethyl 6-{[bis(tert-butoxycarbonyl)amino]methyl}pyridine-2-carboxylate will be reported elsewhere. Single crystals were obtained by slow diffusion of a 40 mM solution of each in MeOH with CH2Cl2 for (I) and with Et2O for (II).
C-bound H atoms were identified in a difference map and subsequently placed in idealized positions and refined using a riding model (aromatic C—H = 0.95 Å and methylene C—H = 0.99 Å). N-bound H atoms were located in the difference map and their coordinates set as riding on their parent atoms. For all C- and N-bound atoms the displacement parameters were set at 1.2 times Ueq of the parent atom. In (II), the H atoms of the water molecule were clearly visible in the difference map as the two highest residual density peaks. These were included in the model and refined using distance restraints [O—H = 0.84 (2) Å and H···H = 1.37 (2) Å]; displacement parameters were constrained to 1.5 times those of the parent O atom. Also in (II), a void of 76 Å3 exists around a centre of symmetry (1/2, 1, 1/2), but no significant residual electron density was observed in this region.
For both compounds, data collection: COLLECT (Hooft, 1998); cell refinement: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); data reduction: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalMaker (CrystalMaker, 2005); software used to prepare material for publication: WinGX (Farrugia, 1999) and publCIF (Westrip, 2010).
C23H23N5O3 | F(000) = 880 |
Mr = 417.46 | Dx = 1.387 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 23640 reflections |
a = 8.1826 (3) Å | θ = 2.9–27.5° |
b = 18.1530 (7) Å | µ = 0.10 mm−1 |
c = 13.4723 (4) Å | T = 120 K |
β = 92.601 (2)° | Prism, colourless |
V = 1999.10 (12) Å3 | 0.15 × 0.1 × 0.1 mm |
Z = 4 |
Bruker–Nonius KappaCCD diffractometer | 3519 independent reflections |
Radiation source: Bruker Nonius FR591 Rotating Anode | 2719 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.078 |
Detector resolution: 9.091 pixels mm-1 | θmax = 25.0°, θmin = 3.0° |
ϕ & ω scans to fill the asymmetric unit | h = −9→9 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −21→21 |
Tmin = 0.986, Tmax = 0.991 | l = −16→15 |
16252 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0158P)2 + 3.0515P] where P = (Fo2 + 2Fc2)/3 |
3519 reflections | (Δ/σ)max < 0.001 |
280 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
C23H23N5O3 | V = 1999.10 (12) Å3 |
Mr = 417.46 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.1826 (3) Å | µ = 0.10 mm−1 |
b = 18.1530 (7) Å | T = 120 K |
c = 13.4723 (4) Å | 0.15 × 0.1 × 0.1 mm |
β = 92.601 (2)° |
Bruker–Nonius KappaCCD diffractometer | 3519 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2719 reflections with I > 2σ(I) |
Tmin = 0.986, Tmax = 0.991 | Rint = 0.078 |
16252 measured reflections |
R[F2 > 2σ(F2)] = 0.060 | 0 restraints |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.27 e Å−3 |
3519 reflections | Δρmin = −0.28 e Å−3 |
280 parameters |
Experimental. SADABS was used to perform the Absorption correction Parameter refinement on 15081 reflections reduced R(int) from 0.1139 to 0.0766 Ratio of minimum to maximum apparent transmission: 0.625353 The given Tmin and Tmax were generated using the SHELX SIZE command |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. [O1,O2, C1 > C7; 0.097, O1 = 0.184?(2) Å] [N1, N2,O3, C9 > C14; 0.053, O3 = 0.095?(2) Å] [N3, N4, N5, C16; 0.001; C16 = 0.001?(2) Å] [C18 > C23; 0.032; C18 = 0.05?(2) Å] |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 1.3365 (2) | 0.52932 (10) | 0.26253 (14) | 0.0268 (4) | |
O2 | 1.2351 (2) | 0.52170 (10) | 0.41360 (14) | 0.0283 (5) | |
O3 | 0.5851 (2) | 0.28738 (10) | 0.13782 (14) | 0.0291 (5) | |
N1 | 0.4844 (3) | 0.39583 (12) | 0.18880 (16) | 0.0236 (5) | |
H91 | 0.4220 | 0.4188 | 0.2310 | 0.028* | |
N2 | 0.3162 (3) | 0.32837 (12) | 0.33001 (16) | 0.0235 (5) | |
N3 | 0.2331 (3) | 0.34011 (12) | 0.57518 (16) | 0.0242 (5) | |
H93 | 0.1950 | 0.3034 | 0.6110 | 0.029* | |
N4 | 0.4363 (3) | 0.42461 (12) | 0.54329 (16) | 0.0248 (5) | |
H94A | 0.5481 | 0.4406 | 0.5580 | 0.030* | |
H94B | 0.3671 | 0.4474 | 0.5000 | 0.030* | |
N5 | 0.4694 (3) | 0.34621 (13) | 0.67591 (16) | 0.0270 (5) | |
H95 | 0.5460 | 0.3768 | 0.6930 | 0.032* | |
C1 | 1.2223 (3) | 0.51636 (14) | 0.3200 (2) | 0.0237 (6) | |
C2 | 1.0593 (3) | 0.49319 (14) | 0.2726 (2) | 0.0242 (6) | |
C3 | 1.0473 (3) | 0.47355 (15) | 0.1726 (2) | 0.0263 (6) | |
H3 | 1.1427 | 0.4734 | 0.1349 | 0.032* | |
C4 | 0.8978 (3) | 0.45428 (16) | 0.1274 (2) | 0.0274 (6) | |
H4 | 0.8925 | 0.4403 | 0.0594 | 0.033* | |
C5 | 0.7564 (3) | 0.45501 (14) | 0.1797 (2) | 0.0241 (6) | |
C6 | 0.7694 (3) | 0.47318 (15) | 0.2807 (2) | 0.0267 (6) | |
H6 | 0.6741 | 0.4730 | 0.3185 | 0.032* | |
C7 | 0.9188 (3) | 0.49143 (15) | 0.3264 (2) | 0.0259 (6) | |
H7 | 0.9252 | 0.5028 | 0.3953 | 0.031* | |
C8 | 0.5908 (3) | 0.43965 (15) | 0.1286 (2) | 0.0252 (6) | |
H8A | 0.5362 | 0.4871 | 0.1123 | 0.030* | |
H8B | 0.6072 | 0.4134 | 0.0654 | 0.030* | |
C9 | 0.4953 (3) | 0.32265 (15) | 0.19234 (19) | 0.0232 (6) | |
C10 | 0.3965 (3) | 0.28445 (15) | 0.26769 (19) | 0.0230 (6) | |
C11 | 0.3983 (3) | 0.20860 (15) | 0.2743 (2) | 0.0270 (6) | |
H11 | 0.4539 | 0.1797 | 0.2277 | 0.032* | |
C12 | 0.3170 (4) | 0.17546 (16) | 0.3506 (2) | 0.0291 (7) | |
H12 | 0.3157 | 0.1234 | 0.3573 | 0.035* | |
C13 | 0.2381 (3) | 0.21964 (15) | 0.4166 (2) | 0.0262 (6) | |
H13 | 0.1839 | 0.1983 | 0.4705 | 0.031* | |
C14 | 0.2386 (3) | 0.29581 (15) | 0.40364 (19) | 0.0235 (6) | |
C15 | 0.1531 (3) | 0.34495 (15) | 0.47563 (19) | 0.0240 (6) | |
H15A | 0.1559 | 0.3966 | 0.4520 | 0.029* | |
H15B | 0.0372 | 0.3299 | 0.4786 | 0.029* | |
C16 | 0.3784 (3) | 0.37029 (15) | 0.59783 (19) | 0.0233 (6) | |
C17 | 0.4386 (3) | 0.27784 (15) | 0.7282 (2) | 0.0265 (6) | |
H17A | 0.5451 | 0.2544 | 0.7463 | 0.032* | |
H17B | 0.3778 | 0.2442 | 0.6821 | 0.032* | |
C18 | 0.3437 (3) | 0.28563 (15) | 0.8213 (2) | 0.0253 (6) | |
C19 | 0.2908 (3) | 0.22244 (17) | 0.8686 (2) | 0.0308 (7) | |
H19 | 0.3087 | 0.1756 | 0.8394 | 0.037* | |
C20 | 0.2126 (4) | 0.22667 (19) | 0.9575 (2) | 0.0373 (8) | |
H20 | 0.1780 | 0.1830 | 0.9891 | 0.045* | |
C21 | 0.1848 (4) | 0.29461 (19) | 1.0001 (2) | 0.0402 (8) | |
H21 | 0.1315 | 0.2977 | 1.0611 | 0.048* | |
C22 | 0.2353 (4) | 0.35811 (19) | 0.9533 (2) | 0.0400 (8) | |
H22 | 0.2159 | 0.4049 | 0.9820 | 0.048* | |
C23 | 0.3140 (4) | 0.35338 (16) | 0.8645 (2) | 0.0340 (7) | |
H23 | 0.3481 | 0.3972 | 0.8328 | 0.041* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0273 (10) | 0.0251 (11) | 0.0281 (10) | −0.0015 (8) | 0.0033 (8) | −0.0014 (8) |
O2 | 0.0333 (11) | 0.0258 (11) | 0.0256 (11) | −0.0011 (8) | −0.0025 (8) | 0.0008 (8) |
O3 | 0.0336 (11) | 0.0262 (11) | 0.0277 (10) | 0.0049 (9) | 0.0046 (9) | −0.0007 (8) |
N1 | 0.0267 (12) | 0.0212 (12) | 0.0232 (12) | 0.0000 (9) | 0.0042 (9) | −0.0023 (9) |
N2 | 0.0242 (12) | 0.0251 (12) | 0.0210 (11) | −0.0026 (9) | −0.0015 (9) | −0.0011 (10) |
N3 | 0.0294 (13) | 0.0228 (12) | 0.0205 (11) | −0.0036 (10) | 0.0019 (9) | 0.0031 (9) |
N4 | 0.0302 (13) | 0.0214 (12) | 0.0226 (12) | −0.0039 (10) | −0.0005 (9) | 0.0044 (10) |
N5 | 0.0308 (13) | 0.0244 (13) | 0.0254 (12) | −0.0079 (10) | −0.0035 (10) | 0.0030 (10) |
C1 | 0.0302 (15) | 0.0114 (13) | 0.0295 (15) | 0.0032 (11) | 0.0019 (12) | 0.0004 (11) |
C2 | 0.0295 (15) | 0.0159 (14) | 0.0271 (14) | 0.0012 (11) | 0.0002 (11) | 0.0027 (11) |
C3 | 0.0259 (15) | 0.0281 (15) | 0.0254 (14) | 0.0020 (12) | 0.0060 (11) | −0.0010 (12) |
C4 | 0.0318 (16) | 0.0287 (16) | 0.0218 (14) | 0.0009 (12) | 0.0018 (12) | −0.0030 (12) |
C5 | 0.0286 (15) | 0.0157 (13) | 0.0278 (14) | −0.0003 (11) | 0.0009 (11) | 0.0013 (11) |
C6 | 0.0264 (15) | 0.0248 (15) | 0.0291 (15) | 0.0018 (12) | 0.0048 (12) | −0.0009 (12) |
C7 | 0.0327 (16) | 0.0228 (15) | 0.0223 (14) | −0.0001 (12) | 0.0015 (12) | −0.0001 (11) |
C8 | 0.0284 (15) | 0.0211 (14) | 0.0262 (14) | −0.0014 (11) | 0.0015 (11) | 0.0003 (11) |
C9 | 0.0236 (14) | 0.0262 (16) | 0.0197 (13) | 0.0015 (11) | −0.0006 (11) | −0.0028 (11) |
C10 | 0.0228 (14) | 0.0242 (15) | 0.0217 (13) | −0.0003 (11) | −0.0012 (11) | −0.0014 (11) |
C11 | 0.0290 (15) | 0.0241 (16) | 0.0277 (15) | 0.0004 (12) | −0.0003 (12) | −0.0032 (12) |
C12 | 0.0388 (17) | 0.0198 (15) | 0.0285 (15) | −0.0028 (12) | −0.0026 (12) | −0.0014 (12) |
C13 | 0.0309 (15) | 0.0227 (15) | 0.0250 (14) | −0.0035 (12) | −0.0008 (12) | 0.0014 (11) |
C14 | 0.0243 (14) | 0.0251 (15) | 0.0208 (13) | −0.0002 (11) | −0.0047 (11) | −0.0015 (11) |
C15 | 0.0265 (14) | 0.0224 (15) | 0.0228 (14) | −0.0013 (11) | −0.0009 (11) | −0.0009 (11) |
C16 | 0.0268 (15) | 0.0209 (14) | 0.0221 (14) | 0.0000 (11) | 0.0018 (11) | −0.0026 (11) |
C17 | 0.0344 (16) | 0.0212 (14) | 0.0235 (14) | −0.0002 (12) | −0.0041 (12) | 0.0021 (11) |
C18 | 0.0247 (14) | 0.0275 (15) | 0.0233 (14) | 0.0006 (12) | −0.0023 (11) | 0.0055 (12) |
C19 | 0.0317 (16) | 0.0300 (16) | 0.0302 (15) | −0.0030 (13) | −0.0040 (12) | 0.0061 (13) |
C20 | 0.0334 (17) | 0.045 (2) | 0.0334 (17) | −0.0054 (14) | −0.0012 (13) | 0.0142 (15) |
C21 | 0.0354 (18) | 0.057 (2) | 0.0281 (16) | 0.0056 (15) | 0.0036 (13) | 0.0063 (15) |
C22 | 0.049 (2) | 0.041 (2) | 0.0305 (17) | 0.0082 (15) | 0.0054 (14) | −0.0012 (14) |
C23 | 0.0466 (19) | 0.0257 (16) | 0.0300 (16) | 0.0013 (14) | 0.0030 (13) | 0.0018 (13) |
O1—C1 | 1.263 (3) | C7—H7 | 0.9500 |
O2—C1 | 1.264 (3) | C8—H8A | 0.9900 |
O3—C9 | 1.241 (3) | C8—H8B | 0.9900 |
N1—C9 | 1.332 (3) | C9—C10 | 1.496 (4) |
N1—C8 | 1.453 (3) | C10—C11 | 1.380 (4) |
N1—H91 | 0.8856 | C11—C12 | 1.387 (4) |
N2—C14 | 1.339 (3) | C11—H11 | 0.9500 |
N2—C10 | 1.350 (3) | C12—C13 | 1.379 (4) |
N3—C16 | 1.332 (3) | C12—H12 | 0.9500 |
N3—C15 | 1.468 (3) | C13—C14 | 1.394 (4) |
N3—H93 | 0.8875 | C13—H13 | 0.9500 |
N4—C16 | 1.330 (3) | C14—C15 | 1.512 (4) |
N4—H94A | 0.9716 | C15—H15A | 0.9900 |
N4—H94B | 0.8953 | C15—H15B | 0.9900 |
N5—C16 | 1.335 (3) | C17—C18 | 1.512 (4) |
N5—C17 | 1.455 (3) | C17—H17A | 0.9900 |
N5—H95 | 0.8611 | C17—H17B | 0.9900 |
C1—C2 | 1.512 (4) | C18—C23 | 1.386 (4) |
C2—C7 | 1.387 (4) | C18—C19 | 1.390 (4) |
C2—C3 | 1.394 (4) | C19—C20 | 1.386 (4) |
C3—C4 | 1.386 (4) | C19—H19 | 0.9500 |
C3—H3 | 0.9500 | C20—C21 | 1.383 (5) |
C4—C5 | 1.381 (4) | C20—H20 | 0.9500 |
C4—H4 | 0.9500 | C21—C22 | 1.386 (5) |
C5—C6 | 1.399 (4) | C21—H21 | 0.9500 |
C5—C8 | 1.518 (4) | C22—C23 | 1.387 (4) |
C6—C7 | 1.385 (4) | C22—H22 | 0.9500 |
C6—H6 | 0.9500 | C23—H23 | 0.9500 |
C9—N1—C8 | 121.7 (2) | C10—C11—C12 | 118.5 (3) |
C9—N1—H91 | 119.1 | C10—C11—H11 | 120.8 |
C8—N1—H91 | 118.5 | C12—C11—H11 | 120.8 |
C14—N2—C10 | 117.4 (2) | C13—C12—C11 | 118.7 (3) |
C16—N3—C15 | 122.7 (2) | C13—C12—H12 | 120.7 |
C16—N3—H93 | 121.1 | C11—C12—H12 | 120.7 |
C15—N3—H93 | 112.9 | C12—C13—C14 | 119.5 (3) |
C16—N4—H94A | 117.7 | C12—C13—H13 | 120.3 |
C16—N4—H94B | 118.2 | C14—C13—H13 | 120.3 |
H94A—N4—H94B | 123.8 | N2—C14—C13 | 122.3 (2) |
C16—N5—C17 | 123.9 (2) | N2—C14—C15 | 117.6 (2) |
C16—N5—H95 | 111.9 | C13—C14—C15 | 120.1 (2) |
C17—N5—H95 | 124.1 | N3—C15—C14 | 110.5 (2) |
O1—C1—O2 | 124.6 (2) | N3—C15—H15A | 109.5 |
O1—C1—C2 | 117.1 (2) | C14—C15—H15A | 109.5 |
O2—C1—C2 | 118.3 (2) | N3—C15—H15B | 109.5 |
C7—C2—C3 | 118.4 (3) | C14—C15—H15B | 109.5 |
C7—C2—C1 | 121.5 (2) | H15A—C15—H15B | 108.1 |
C3—C2—C1 | 120.1 (2) | N4—C16—N3 | 121.0 (2) |
C4—C3—C2 | 120.7 (2) | N4—C16—N5 | 118.6 (2) |
C4—C3—H3 | 119.6 | N3—C16—N5 | 120.4 (2) |
C2—C3—H3 | 119.6 | N5—C17—C18 | 115.4 (2) |
C5—C4—C3 | 121.1 (3) | N5—C17—H17A | 108.4 |
C5—C4—H4 | 119.4 | C18—C17—H17A | 108.4 |
C3—C4—H4 | 119.4 | N5—C17—H17B | 108.4 |
C4—C5—C6 | 118.0 (2) | C18—C17—H17B | 108.4 |
C4—C5—C8 | 121.2 (2) | H17A—C17—H17B | 107.5 |
C6—C5—C8 | 120.7 (2) | C23—C18—C19 | 118.4 (3) |
C7—C6—C5 | 121.0 (3) | C23—C18—C17 | 122.5 (3) |
C7—C6—H6 | 119.5 | C19—C18—C17 | 119.0 (3) |
C5—C6—H6 | 119.5 | C20—C19—C18 | 121.0 (3) |
C6—C7—C2 | 120.6 (3) | C20—C19—H19 | 119.5 |
C6—C7—H7 | 119.7 | C18—C19—H19 | 119.5 |
C2—C7—H7 | 119.7 | C21—C20—C19 | 119.9 (3) |
N1—C8—C5 | 113.1 (2) | C21—C20—H20 | 120.0 |
N1—C8—H8A | 109.0 | C19—C20—H20 | 120.0 |
C5—C8—H8A | 109.0 | C20—C21—C22 | 119.7 (3) |
N1—C8—H8B | 109.0 | C20—C21—H21 | 120.2 |
C5—C8—H8B | 109.0 | C22—C21—H21 | 120.2 |
H8A—C8—H8B | 107.8 | C21—C22—C23 | 120.0 (3) |
O3—C9—N1 | 122.3 (2) | C21—C22—H22 | 120.0 |
O3—C9—C10 | 121.0 (2) | C23—C22—H22 | 120.0 |
N1—C9—C10 | 116.7 (2) | C18—C23—C22 | 120.9 (3) |
N2—C10—C11 | 123.6 (2) | C18—C23—H23 | 119.6 |
N2—C10—C9 | 116.2 (2) | C22—C23—H23 | 119.6 |
C11—C10—C9 | 120.1 (2) | ||
O1—C1—C2—C7 | −167.4 (2) | C9—C10—C11—C12 | 174.4 (2) |
O2—C1—C2—C7 | 12.3 (4) | C10—C11—C12—C13 | −0.1 (4) |
O1—C1—C2—C3 | 12.0 (4) | C11—C12—C13—C14 | 1.6 (4) |
O2—C1—C2—C3 | −168.2 (2) | C10—N2—C14—C13 | −0.4 (4) |
C7—C2—C3—C4 | 1.4 (4) | C10—N2—C14—C15 | 178.0 (2) |
C1—C2—C3—C4 | −178.1 (2) | C12—C13—C14—N2 | −1.4 (4) |
C2—C3—C4—C5 | 1.0 (4) | C12—C13—C14—C15 | −179.8 (2) |
C3—C4—C5—C6 | −2.3 (4) | C16—N3—C15—C14 | 72.7 (3) |
C3—C4—C5—C8 | 175.3 (3) | N2—C14—C15—N3 | −113.7 (3) |
C4—C5—C6—C7 | 1.3 (4) | C13—C14—C15—N3 | 64.7 (3) |
C8—C5—C6—C7 | −176.2 (2) | C15—N3—C16—N4 | 21.1 (4) |
C5—C6—C7—C2 | 1.0 (4) | C15—N3—C16—N5 | −158.6 (2) |
C3—C2—C7—C6 | −2.4 (4) | C17—N5—C16—N4 | −166.1 (2) |
C1—C2—C7—C6 | 177.1 (2) | C17—N5—C16—N3 | 13.6 (4) |
C9—N1—C8—C5 | −83.0 (3) | C16—N5—C17—C18 | −97.2 (3) |
C4—C5—C8—N1 | 141.1 (3) | N5—C17—C18—C23 | −11.5 (4) |
C6—C5—C8—N1 | −41.4 (3) | N5—C17—C18—C19 | 171.8 (2) |
C8—N1—C9—O3 | −7.0 (4) | C23—C18—C19—C20 | −1.0 (4) |
C8—N1—C9—C10 | 171.5 (2) | C17—C18—C19—C20 | 175.9 (3) |
C14—N2—C10—C11 | 2.0 (4) | C18—C19—C20—C21 | 0.5 (4) |
C14—N2—C10—C9 | −174.3 (2) | C19—C20—C21—C22 | 0.2 (5) |
O3—C9—C10—N2 | 173.4 (2) | C20—C21—C22—C23 | −0.4 (5) |
N1—C9—C10—N2 | −5.1 (3) | C19—C18—C23—C22 | 0.8 (4) |
O3—C9—C10—C11 | −3.1 (4) | C17—C18—C23—C22 | −176.0 (3) |
N1—C9—C10—C11 | 178.5 (2) | C21—C22—C23—C18 | −0.1 (5) |
N2—C10—C11—C12 | −1.8 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H91···O1i | 0.89 | 2.17 | 2.904 (3) | 140 |
N3—H93···O3ii | 0.89 | 1.92 | 2.762 (3) | 158 |
N4—H94A···O2iii | 0.97 | 1.92 | 2.894 (3) | 177 |
N4—H94B···O2i | 0.90 | 2.06 | 2.934 (3) | 167 |
N5—H95···O1iii | 0.86 | 2.03 | 2.863 (3) | 162 |
Symmetry codes: (i) x−1, y, z; (ii) x−1/2, −y+1/2, z+1/2; (iii) −x+2, −y+1, −z+1. |
C26H28N6O4·H2O | Z = 2 |
Mr = 506.56 | F(000) = 536 |
Triclinic, P1 | Dx = 1.308 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 11.0848 (9) Å | Cell parameters from 98818 reflections |
b = 11.5591 (7) Å | θ = 2.9–27.5° |
c = 11.9676 (11) Å | µ = 0.09 mm−1 |
α = 99.956 (5)° | T = 120 K |
β = 98.908 (3)° | Prism, colourless |
γ = 117.818 (4)° | 0.2 × 0.17 × 0.06 mm |
V = 1286.03 (18) Å3 |
Bruker–Nonius KappaCCD diffractometer | 5835 independent reflections |
Radiation source: Bruker Nonius FR591 Rotating Anode | 4304 reflections with I > 2σ(I) |
10cm confocal mirrors monochromator | Rint = 0.049 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
ϕ & ω scans to fill the asymmetric unit | h = −14→14 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −15→15 |
Tmin = 0.982, Tmax = 0.994 | l = −15→15 |
20604 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.077 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.145 | H-atom parameters constrained |
S = 1.12 | w = 1/[σ2(Fo2) + (0.021P)2 + 1.6724P] where P = (Fo2 + 2Fc2)/3 |
5835 reflections | (Δ/σ)max < 0.001 |
334 parameters | Δρmax = 0.31 e Å−3 |
3 restraints | Δρmin = −0.24 e Å−3 |
C26H28N6O4·H2O | γ = 117.818 (4)° |
Mr = 506.56 | V = 1286.03 (18) Å3 |
Triclinic, P1 | Z = 2 |
a = 11.0848 (9) Å | Mo Kα radiation |
b = 11.5591 (7) Å | µ = 0.09 mm−1 |
c = 11.9676 (11) Å | T = 120 K |
α = 99.956 (5)° | 0.2 × 0.17 × 0.06 mm |
β = 98.908 (3)° |
Bruker–Nonius KappaCCD diffractometer | 5835 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 4304 reflections with I > 2σ(I) |
Tmin = 0.982, Tmax = 0.994 | Rint = 0.049 |
20604 measured reflections |
R[F2 > 2σ(F2)] = 0.077 | 3 restraints |
wR(F2) = 0.145 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.31 e Å−3 |
5835 reflections | Δρmin = −0.24 e Å−3 |
334 parameters |
Experimental. SADABS was used to perform the Absorption correction Parameter refinement on 17133 reflections reduced R(int) from 0.1329 to 0.0460 Ratio of minimum to maximum apparent transmission: 0.653021 The given Tmin and Tmax were generated using the SHELX SIZE command |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. [O1, O2, C1 > C7; 0.057; O1 =-0.111 (2) Å] [N1, N2, O3, C9 > C14; 0.036; C10 = -0.059 (2) Å] [N3, N4, N5,C16; 0.004; C16 = 0.006 (2) Å] [C18, C19, N6, O4; 0.007; C19 = -0.012 (2) Å] [C21> C26; 0.002; C26 = -0.004 (2) Å] |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.93390 (18) | −0.24852 (18) | −0.18249 (15) | 0.0291 (4) | |
O2 | −0.95992 (19) | −0.31392 (18) | −0.01815 (17) | 0.0330 (4) | |
O3 | −0.41538 (19) | 0.30624 (19) | 0.41625 (16) | 0.0323 (4) | |
O4 | 0.52503 (19) | 0.52348 (18) | 0.30600 (15) | 0.0297 (4) | |
N1 | −0.2870 (2) | 0.2710 (2) | 0.29848 (18) | 0.0241 (5) | |
H1 | −0.2194 | 0.2523 | 0.2932 | 0.029* | |
N2 | −0.0828 (2) | 0.3245 (2) | 0.48999 (18) | 0.0224 (4) | |
N3 | 0.1416 (2) | 0.3363 (2) | 0.43571 (18) | 0.0256 (5) | |
H3 | 0.0718 | 0.3374 | 0.3906 | 0.031* | |
N4 | 0.3476 (2) | 0.3298 (2) | 0.45022 (18) | 0.0272 (5) | |
H4A | 0.4068 | 0.3163 | 0.4165 | 0.033* | |
H4B | 0.3648 | 0.3511 | 0.5275 | 0.033* | |
N5 | 0.2005 (2) | 0.2865 (2) | 0.26816 (18) | 0.0274 (5) | |
H5 | 0.1207 | 0.2791 | 0.2322 | 0.033* | |
N6 | 0.4363 (2) | 0.6172 (2) | 0.19247 (19) | 0.0291 (5) | |
H6 | 0.3743 | 0.6037 | 0.1288 | 0.035* | |
C1 | −0.8961 (3) | −0.2312 (2) | −0.0737 (2) | 0.0244 (5) | |
C2 | −0.7599 (3) | −0.1018 (2) | −0.0019 (2) | 0.0225 (5) | |
C3 | −0.7016 (3) | −0.0832 (3) | 0.1158 (2) | 0.0266 (6) | |
H3A | −0.7483 | −0.1517 | 0.1529 | 0.032* | |
C4 | −0.5752 (3) | 0.0352 (3) | 0.1796 (2) | 0.0265 (6) | |
H4 | −0.5359 | 0.0468 | 0.2599 | 0.032* | |
C5 | −0.5062 (2) | 0.1366 (2) | 0.1269 (2) | 0.0227 (5) | |
C6 | −0.5654 (3) | 0.1186 (2) | 0.0098 (2) | 0.0243 (5) | |
H6A | −0.5196 | 0.1879 | −0.0269 | 0.029* | |
C7 | −0.6909 (3) | 0.0000 (2) | −0.0544 (2) | 0.0250 (5) | |
H7 | −0.7298 | −0.0115 | −0.1347 | 0.030* | |
C8 | −0.3723 (3) | 0.2706 (2) | 0.1928 (2) | 0.0248 (5) | |
H8A | −0.3125 | 0.2989 | 0.1382 | 0.030* | |
H8B | −0.3990 | 0.3403 | 0.2152 | 0.030* | |
C9 | −0.3101 (3) | 0.2994 (2) | 0.4039 (2) | 0.0257 (5) | |
C10 | −0.1971 (2) | 0.3290 (2) | 0.5095 (2) | 0.0231 (5) | |
C11 | −0.2091 (3) | 0.3678 (3) | 0.6208 (2) | 0.0286 (6) | |
H11 | −0.2917 | 0.3692 | 0.6313 | 0.034* | |
C12 | −0.0985 (3) | 0.4047 (3) | 0.7172 (2) | 0.0328 (6) | |
H12 | −0.1036 | 0.4325 | 0.7949 | 0.039* | |
C13 | 0.0191 (3) | 0.4005 (2) | 0.6984 (2) | 0.0261 (5) | |
H13 | 0.0963 | 0.4250 | 0.7629 | 0.031* | |
C14 | 0.0228 (2) | 0.3596 (2) | 0.5833 (2) | 0.0220 (5) | |
C15 | 0.1495 (3) | 0.3540 (3) | 0.5598 (2) | 0.0250 (5) | |
H15A | 0.2373 | 0.4395 | 0.6067 | 0.030* | |
H15B | 0.1522 | 0.2772 | 0.5836 | 0.030* | |
C16 | 0.2328 (3) | 0.3182 (2) | 0.3849 (2) | 0.0230 (5) | |
C17 | 0.2822 (3) | 0.2627 (3) | 0.1935 (2) | 0.0264 (6) | |
H17A | 0.2217 | 0.1727 | 0.1343 | 0.032* | |
H17B | 0.3621 | 0.2611 | 0.2419 | 0.032* | |
C18 | 0.3393 (3) | 0.3726 (3) | 0.1312 (2) | 0.0272 (6) | |
H18A | 0.2594 | 0.3750 | 0.0838 | 0.033* | |
H18B | 0.3892 | 0.3506 | 0.0768 | 0.033* | |
C19 | 0.4406 (3) | 0.5116 (3) | 0.2181 (2) | 0.0251 (5) | |
C20 | 0.5333 (3) | 0.7555 (3) | 0.2686 (2) | 0.0323 (6) | |
H20A | 0.5274 | 0.7568 | 0.3505 | 0.039* | |
H20B | 0.5017 | 0.8167 | 0.2443 | 0.039* | |
C21 | 0.6865 (3) | 0.8112 (3) | 0.2671 (2) | 0.0299 (6) | |
C22 | 0.7891 (3) | 0.9325 (3) | 0.3518 (3) | 0.0397 (7) | |
H22 | 0.7622 | 0.9764 | 0.4092 | 0.048* | |
C23 | 0.9306 (4) | 0.9888 (3) | 0.3518 (3) | 0.0501 (9) | |
H23 | 1.0000 | 1.0711 | 0.4099 | 0.060* | |
C24 | 0.9720 (3) | 0.9273 (3) | 0.2689 (3) | 0.0466 (8) | |
H24 | 1.0689 | 0.9668 | 0.2695 | 0.056* | |
C25 | 0.8705 (3) | 0.8073 (3) | 0.1850 (3) | 0.0382 (7) | |
H25 | 0.8976 | 0.7641 | 0.1272 | 0.046* | |
C26 | 0.7302 (3) | 0.7503 (3) | 0.1849 (2) | 0.0321 (6) | |
H26 | 0.6617 | 0.6672 | 0.1272 | 0.038* | |
O1W | 0.19025 (19) | 0.54508 (18) | 0.00970 (16) | 0.0317 (4) | |
H1W | 0.1257 | 0.4710 | 0.0186 | 0.048* | |
H2W | 0.1544 | 0.5962 | 0.0079 | 0.048* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0222 (9) | 0.0326 (10) | 0.0229 (10) | 0.0121 (8) | −0.0035 (7) | −0.0006 (7) |
O2 | 0.0259 (10) | 0.0290 (10) | 0.0354 (11) | 0.0085 (8) | 0.0040 (8) | 0.0087 (8) |
O3 | 0.0249 (10) | 0.0433 (11) | 0.0310 (11) | 0.0213 (9) | 0.0058 (8) | 0.0054 (8) |
O4 | 0.0242 (10) | 0.0342 (10) | 0.0241 (10) | 0.0131 (8) | −0.0022 (8) | 0.0056 (8) |
N1 | 0.0169 (10) | 0.0288 (11) | 0.0224 (11) | 0.0120 (9) | −0.0004 (8) | 0.0013 (9) |
N2 | 0.0190 (10) | 0.0221 (10) | 0.0208 (11) | 0.0089 (8) | 0.0014 (8) | 0.0018 (8) |
N3 | 0.0208 (11) | 0.0363 (12) | 0.0194 (11) | 0.0164 (9) | 0.0007 (9) | 0.0056 (9) |
N4 | 0.0219 (11) | 0.0414 (13) | 0.0184 (11) | 0.0191 (10) | 0.0025 (9) | 0.0020 (9) |
N5 | 0.0198 (11) | 0.0392 (12) | 0.0204 (11) | 0.0163 (10) | 0.0009 (9) | 0.0022 (9) |
N6 | 0.0278 (12) | 0.0327 (12) | 0.0224 (11) | 0.0151 (10) | −0.0014 (9) | 0.0053 (9) |
C1 | 0.0182 (12) | 0.0265 (13) | 0.0280 (14) | 0.0137 (10) | 0.0022 (10) | 0.0031 (10) |
C2 | 0.0197 (12) | 0.0243 (12) | 0.0232 (13) | 0.0129 (10) | 0.0022 (10) | 0.0036 (10) |
C3 | 0.0258 (13) | 0.0285 (13) | 0.0228 (13) | 0.0133 (11) | 0.0029 (11) | 0.0056 (10) |
C4 | 0.0247 (13) | 0.0307 (13) | 0.0203 (13) | 0.0140 (11) | 0.0000 (10) | 0.0042 (10) |
C5 | 0.0175 (12) | 0.0253 (12) | 0.0227 (13) | 0.0112 (10) | 0.0024 (10) | 0.0021 (10) |
C6 | 0.0243 (13) | 0.0251 (12) | 0.0234 (13) | 0.0132 (10) | 0.0039 (10) | 0.0065 (10) |
C7 | 0.0244 (13) | 0.0286 (13) | 0.0204 (13) | 0.0146 (11) | 0.0017 (10) | 0.0032 (10) |
C8 | 0.0212 (13) | 0.0282 (13) | 0.0219 (13) | 0.0120 (10) | 0.0023 (10) | 0.0048 (10) |
C9 | 0.0200 (13) | 0.0236 (12) | 0.0297 (14) | 0.0104 (10) | 0.0038 (11) | 0.0034 (10) |
C10 | 0.0172 (12) | 0.0231 (12) | 0.0250 (13) | 0.0094 (10) | 0.0020 (10) | 0.0032 (10) |
C11 | 0.0226 (13) | 0.0348 (14) | 0.0266 (14) | 0.0145 (11) | 0.0074 (11) | 0.0041 (11) |
C12 | 0.0359 (16) | 0.0391 (15) | 0.0200 (13) | 0.0187 (13) | 0.0060 (12) | 0.0027 (11) |
C13 | 0.0241 (13) | 0.0295 (13) | 0.0202 (13) | 0.0126 (11) | 0.0011 (10) | 0.0036 (10) |
C14 | 0.0198 (12) | 0.0200 (12) | 0.0221 (13) | 0.0086 (10) | 0.0026 (10) | 0.0037 (9) |
C15 | 0.0221 (13) | 0.0297 (13) | 0.0196 (13) | 0.0133 (11) | 0.0006 (10) | 0.0024 (10) |
C16 | 0.0181 (12) | 0.0210 (12) | 0.0224 (13) | 0.0067 (10) | 0.0013 (10) | 0.0020 (10) |
C17 | 0.0232 (13) | 0.0309 (13) | 0.0209 (13) | 0.0140 (11) | 0.0018 (10) | 0.0005 (10) |
C18 | 0.0233 (13) | 0.0321 (14) | 0.0200 (13) | 0.0137 (11) | −0.0013 (10) | 0.0007 (10) |
C19 | 0.0213 (13) | 0.0329 (14) | 0.0214 (13) | 0.0146 (11) | 0.0050 (10) | 0.0065 (10) |
C20 | 0.0349 (16) | 0.0334 (15) | 0.0300 (15) | 0.0197 (12) | 0.0062 (12) | 0.0073 (12) |
C21 | 0.0347 (15) | 0.0276 (13) | 0.0227 (13) | 0.0130 (12) | 0.0025 (11) | 0.0089 (11) |
C22 | 0.0429 (18) | 0.0311 (15) | 0.0334 (16) | 0.0140 (13) | 0.0024 (14) | 0.0039 (12) |
C23 | 0.0422 (19) | 0.0317 (16) | 0.046 (2) | 0.0021 (14) | −0.0032 (15) | 0.0043 (14) |
C24 | 0.0311 (17) | 0.0451 (18) | 0.050 (2) | 0.0088 (14) | 0.0059 (15) | 0.0180 (15) |
C25 | 0.0381 (17) | 0.0410 (16) | 0.0326 (16) | 0.0174 (14) | 0.0065 (13) | 0.0144 (13) |
C26 | 0.0347 (15) | 0.0306 (14) | 0.0229 (14) | 0.0130 (12) | 0.0006 (12) | 0.0060 (11) |
O1W | 0.0261 (10) | 0.0336 (10) | 0.0330 (11) | 0.0134 (8) | 0.0046 (8) | 0.0118 (8) |
O1—C1 | 1.254 (3) | C8—H8B | 0.9900 |
O2—C1 | 1.261 (3) | C9—C10 | 1.497 (3) |
O3—C9 | 1.235 (3) | C10—C11 | 1.378 (3) |
O4—C19 | 1.236 (3) | C11—C12 | 1.385 (4) |
N1—C9 | 1.342 (3) | C11—H11 | 0.9500 |
N1—C8 | 1.455 (3) | C12—C13 | 1.378 (4) |
N1—H1 | 0.8794 | C12—H12 | 0.9500 |
N2—C14 | 1.333 (3) | C13—C14 | 1.390 (3) |
N2—C10 | 1.346 (3) | C13—H13 | 0.9500 |
N3—C16 | 1.333 (3) | C14—C15 | 1.502 (3) |
N3—C15 | 1.446 (3) | C15—H15A | 0.9900 |
N3—H3 | 0.8789 | C15—H15B | 0.9900 |
N4—C16 | 1.320 (3) | C17—C18 | 1.515 (4) |
N4—H4A | 0.8796 | C17—H17A | 0.9900 |
N4—H4B | 0.8804 | C17—H17B | 0.9900 |
N5—C16 | 1.327 (3) | C18—C19 | 1.517 (3) |
N5—C17 | 1.447 (3) | C18—H18A | 0.9900 |
N5—H5 | 0.8796 | C18—H18B | 0.9900 |
N6—C19 | 1.329 (3) | C20—C21 | 1.513 (4) |
N6—C20 | 1.459 (3) | C20—H20A | 0.9900 |
N6—H6 | 0.8797 | C20—H20B | 0.9900 |
C1—C2 | 1.517 (3) | C21—C26 | 1.387 (4) |
C2—C7 | 1.389 (3) | C21—C22 | 1.396 (4) |
C2—C3 | 1.390 (3) | C22—C23 | 1.389 (5) |
C3—C4 | 1.391 (3) | C22—H22 | 0.9500 |
C3—H3A | 0.9500 | C23—C24 | 1.380 (5) |
C4—C5 | 1.387 (3) | C23—H23 | 0.9500 |
C4—H4 | 0.9500 | C24—C25 | 1.382 (4) |
C5—C6 | 1.388 (3) | C24—H24 | 0.9500 |
C5—C8 | 1.514 (3) | C25—C26 | 1.377 (4) |
C6—C7 | 1.389 (3) | C25—H25 | 0.9500 |
C6—H6A | 0.9500 | C26—H26 | 0.9500 |
C7—H7 | 0.9500 | O1W—H1W | 0.8601 |
C8—H8A | 0.9900 | O1W—H2W | 0.8536 |
C9—N1—C8 | 120.9 (2) | C12—C13—C14 | 118.8 (2) |
C9—N1—H1 | 119.5 | C12—C13—H13 | 120.6 |
C8—N1—H1 | 119.6 | C14—C13—H13 | 120.6 |
C14—N2—C10 | 117.9 (2) | N2—C14—C13 | 122.7 (2) |
C16—N3—C15 | 124.6 (2) | N2—C14—C15 | 117.1 (2) |
C16—N3—H3 | 117.7 | C13—C14—C15 | 120.1 (2) |
C15—N3—H3 | 117.7 | N3—C15—C14 | 109.7 (2) |
C16—N4—H4A | 120.0 | N3—C15—H15A | 109.7 |
C16—N4—H4B | 119.9 | C14—C15—H15A | 109.7 |
H4A—N4—H4B | 120.1 | N3—C15—H15B | 109.7 |
C16—N5—C17 | 127.1 (2) | C14—C15—H15B | 109.7 |
C16—N5—H5 | 116.5 | H15A—C15—H15B | 108.2 |
C17—N5—H5 | 116.4 | N4—C16—N5 | 123.1 (2) |
C19—N6—C20 | 120.8 (2) | N4—C16—N3 | 120.1 (2) |
C19—N6—H6 | 119.6 | N5—C16—N3 | 116.8 (2) |
C20—N6—H6 | 119.5 | N5—C17—C18 | 111.0 (2) |
O1—C1—O2 | 125.7 (2) | N5—C17—H17A | 109.4 |
O1—C1—C2 | 117.9 (2) | C18—C17—H17A | 109.4 |
O2—C1—C2 | 116.4 (2) | N5—C17—H17B | 109.4 |
C7—C2—C3 | 119.0 (2) | C18—C17—H17B | 109.4 |
C7—C2—C1 | 119.7 (2) | H17A—C17—H17B | 108.0 |
C3—C2—C1 | 121.2 (2) | C17—C18—C19 | 111.5 (2) |
C2—C3—C4 | 120.4 (2) | C17—C18—H18A | 109.3 |
C2—C3—H3A | 119.8 | C19—C18—H18A | 109.3 |
C4—C3—H3A | 119.8 | C17—C18—H18B | 109.3 |
C5—C4—C3 | 120.5 (2) | C19—C18—H18B | 109.3 |
C5—C4—H4 | 119.7 | H18A—C18—H18B | 108.0 |
C3—C4—H4 | 119.7 | O4—C19—N6 | 122.9 (2) |
C4—C5—C6 | 119.0 (2) | O4—C19—C18 | 120.1 (2) |
C4—C5—C8 | 123.2 (2) | N6—C19—C18 | 116.9 (2) |
C6—C5—C8 | 117.7 (2) | N6—C20—C21 | 114.5 (2) |
C5—C6—C7 | 120.6 (2) | N6—C20—H20A | 108.6 |
C5—C6—H6A | 119.7 | C21—C20—H20A | 108.6 |
C7—C6—H6A | 119.7 | N6—C20—H20B | 108.6 |
C2—C7—C6 | 120.5 (2) | C21—C20—H20B | 108.6 |
C2—C7—H7 | 119.8 | H20A—C20—H20B | 107.6 |
C6—C7—H7 | 119.8 | C26—C21—C22 | 118.3 (3) |
N1—C8—C5 | 116.3 (2) | C26—C21—C20 | 123.8 (2) |
N1—C8—H8A | 108.2 | C22—C21—C20 | 118.0 (3) |
C5—C8—H8A | 108.2 | C23—C22—C21 | 119.9 (3) |
N1—C8—H8B | 108.2 | C23—C22—H22 | 120.1 |
C5—C8—H8B | 108.2 | C21—C22—H22 | 120.1 |
H8A—C8—H8B | 107.4 | C24—C23—C22 | 121.1 (3) |
O3—C9—N1 | 123.2 (2) | C24—C23—H23 | 119.5 |
O3—C9—C10 | 120.3 (2) | C22—C23—H23 | 119.5 |
N1—C9—C10 | 116.4 (2) | C23—C24—C25 | 119.1 (3) |
N2—C10—C11 | 122.9 (2) | C23—C24—H24 | 120.4 |
N2—C10—C9 | 117.3 (2) | C25—C24—H24 | 120.4 |
C11—C10—C9 | 119.6 (2) | C26—C25—C24 | 120.2 (3) |
C10—C11—C12 | 118.7 (2) | C26—C25—H25 | 119.9 |
C10—C11—H11 | 120.6 | C24—C25—H25 | 119.9 |
C12—C11—H11 | 120.6 | C25—C26—C21 | 121.5 (3) |
C13—C12—C11 | 118.9 (2) | C25—C26—H26 | 119.2 |
C13—C12—H12 | 120.5 | C21—C26—H26 | 119.2 |
C11—C12—H12 | 120.5 | H1W—O1W—H2W | 105.4 |
O1—C1—C2—C7 | 7.8 (3) | C10—N2—C14—C13 | −0.2 (3) |
O2—C1—C2—C7 | −173.8 (2) | C10—N2—C14—C15 | −180.0 (2) |
O1—C1—C2—C3 | −171.7 (2) | C12—C13—C14—N2 | 0.2 (4) |
O2—C1—C2—C3 | 6.7 (3) | C12—C13—C14—C15 | 179.9 (2) |
C7—C2—C3—C4 | −0.6 (4) | C16—N3—C15—C14 | −175.2 (2) |
C1—C2—C3—C4 | 178.9 (2) | N2—C14—C15—N3 | 11.4 (3) |
C2—C3—C4—C5 | 0.4 (4) | C13—C14—C15—N3 | −168.4 (2) |
C3—C4—C5—C6 | 0.4 (4) | C17—N5—C16—N4 | −1.5 (4) |
C3—C4—C5—C8 | 177.0 (2) | C17—N5—C16—N3 | 179.7 (2) |
C4—C5—C6—C7 | −0.9 (4) | C15—N3—C16—N4 | −7.1 (4) |
C8—C5—C6—C7 | −177.7 (2) | C15—N3—C16—N5 | 171.8 (2) |
C3—C2—C7—C6 | 0.1 (4) | C16—N5—C17—C18 | −113.2 (3) |
C1—C2—C7—C6 | −179.4 (2) | N5—C17—C18—C19 | 62.8 (3) |
C5—C6—C7—C2 | 0.6 (4) | C20—N6—C19—O4 | 0.0 (4) |
C9—N1—C8—C5 | −89.2 (3) | C20—N6—C19—C18 | −177.8 (2) |
C4—C5—C8—N1 | 23.5 (4) | C17—C18—C19—O4 | 39.2 (3) |
C6—C5—C8—N1 | −159.8 (2) | C17—C18—C19—N6 | −143.0 (2) |
C8—N1—C9—O3 | 11.3 (4) | C19—N6—C20—C21 | 69.6 (3) |
C8—N1—C9—C10 | −166.2 (2) | N6—C20—C21—C26 | 12.2 (4) |
C14—N2—C10—C11 | 0.0 (3) | N6—C20—C21—C22 | −169.2 (2) |
C14—N2—C10—C9 | 175.6 (2) | C26—C21—C22—C23 | 0.2 (4) |
O3—C9—C10—N2 | −177.6 (2) | C20—C21—C22—C23 | −178.5 (3) |
N1—C9—C10—N2 | −0.1 (3) | C21—C22—C23—C24 | 0.3 (5) |
O3—C9—C10—C11 | −1.8 (4) | C22—C23—C24—C25 | −0.2 (5) |
N1—C9—C10—C11 | 175.7 (2) | C23—C24—C25—C26 | −0.3 (5) |
N2—C10—C11—C12 | 0.4 (4) | C24—C25—C26—C21 | 0.7 (4) |
C9—C10—C11—C12 | −175.1 (2) | C22—C21—C26—C25 | −0.7 (4) |
C10—C11—C12—C13 | −0.4 (4) | C20—C21—C26—C25 | 178.0 (3) |
C11—C12—C13—C14 | 0.2 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.88 | 2.32 | 3.084 (3) | 145 |
N3—H3···O1i | 0.88 | 2.46 | 3.180 (3) | 139 |
N4—H4A···O3ii | 0.88 | 2.03 | 2.847 (3) | 154 |
N4—H4B···O4iii | 0.88 | 2.04 | 2.856 (3) | 154 |
N5—H5···O1i | 0.88 | 1.91 | 2.770 (3) | 167 |
N6—H6···O1W | 0.88 | 2.03 | 2.884 (3) | 163 |
O1W—H1W···O2i | 0.86 | 1.88 | 2.734 (3) | 169 |
O1W—H2W···O2iv | 0.85 | 2.00 | 2.844 (3) | 170 |
Symmetry codes: (i) −x−1, −y, −z; (ii) x+1, y, z; (iii) −x+1, −y+1, −z+1; (iv) x+1, y+1, z. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C23H23N5O3 | C26H28N6O4·H2O |
Mr | 417.46 | 506.56 |
Crystal system, space group | Monoclinic, P21/n | Triclinic, P1 |
Temperature (K) | 120 | 120 |
a, b, c (Å) | 8.1826 (3), 18.1530 (7), 13.4723 (4) | 11.0848 (9), 11.5591 (7), 11.9676 (11) |
α, β, γ (°) | 90, 92.601 (2), 90 | 99.956 (5), 98.908 (3), 117.818 (4) |
V (Å3) | 1999.10 (12) | 1286.03 (18) |
Z | 4 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.09 |
Crystal size (mm) | 0.15 × 0.1 × 0.1 | 0.2 × 0.17 × 0.06 |
Data collection | ||
Diffractometer | Bruker–Nonius KappaCCD diffractometer | Bruker–Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.986, 0.991 | 0.982, 0.994 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16252, 3519, 2719 | 20604, 5835, 4304 |
Rint | 0.078 | 0.049 |
(sin θ/λ)max (Å−1) | 0.595 | 0.649 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.132, 1.08 | 0.077, 0.145, 1.12 |
No. of reflections | 3519 | 5835 |
No. of parameters | 280 | 334 |
No. of restraints | 0 | 3 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.28 | 0.31, −0.24 |
Computer programs: , DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), CrystalMaker (CrystalMaker, 2005), WinGX (Farrugia, 1999) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H91···O1i | 0.89 | 2.17 | 2.904 (3) | 139.5 |
N3—H93···O3ii | 0.89 | 1.92 | 2.762 (3) | 157.8 |
N4—H94A···O2iii | 0.97 | 1.92 | 2.894 (3) | 176.5 |
N4—H94B···O2i | 0.90 | 2.06 | 2.934 (3) | 166.5 |
N5—H95···O1iii | 0.86 | 2.03 | 2.863 (3) | 161.5 |
Symmetry codes: (i) x−1, y, z; (ii) x−1/2, −y+1/2, z+1/2; (iii) −x+2, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.88 | 2.32 | 3.084 (3) | 145.0 |
N3—H3···O1i | 0.88 | 2.46 | 3.180 (3) | 139.1 |
N4—H4A···O3ii | 0.88 | 2.03 | 2.847 (3) | 154.3 |
N4—H4B···O4iii | 0.88 | 2.04 | 2.856 (3) | 153.9 |
N5—H5···O1i | 0.88 | 1.91 | 2.770 (3) | 167.3 |
N6—H6···O1W | 0.88 | 2.03 | 2.884 (3) | 162.8 |
O1W—H1W···O2i | 0.86 | 1.88 | 2.734 (3) | 168.9 |
O1W—H2W···O2iv | 0.85 | 2.00 | 2.844 (3) | 169.5 |
Symmetry codes: (i) −x−1, −y, −z; (ii) x+1, y, z; (iii) −x+1, −y+1, −z+1; (iv) x+1, y+1, z. |
Guanidnium salts have been widely employed as motifs for carboxylate binding (Blondeau et al., 2007; Fitzmaurice et al., 2002) owing to a structural complementarity that results in well aligned hydrogen-bond donor and acceptor groups and favourable electrostatic interaction in the ion pair. We have recently reported a pyridylguanidinium receptor in which two additional, cooperative (amide) hydrogen-bond donors for binding carboxylate are incorporated, and in which the pyridine lone pair participates in intramolecular hydrogen bonding for preorganization of the binding motif (Fitzmaurice et al., 2007). Entropy-driven binding of acetate has been achieved in this system in competitive solution-phase media, and we have now prepared analogous systems, (I) and (II), extended in structure to incorporate a tethered carboxylate terminus. We aim to develop a simple supramolecular model based on dimerization of zwitterions (I) and (II), in which the energetic contribution of individual intermolecular binding interactions to the overall self-assembly, driven primarily by the guanidinium–carboxylate binding, can be determined. The present study of dimeric self-association of (I) and (II) was undertaken in order to investigate the ion-pair interaction and other contributing intramolecular interactions in the context of the overall assembly, and to inform monomer design.
The structure of (I) (Fig. 1) comprises an anionic benzoate group linked through a methylene group to a pyridinecarboxylic acid amide; this is in turn linked via another methylene group to a guanidinium cationic group terminated by a methylene-linked benzene ring. These four groups are individually essentially planar, with the three methylene groups acting as hinges, allowing the molecule to adopt a twisted conformation driven by steric and hydrogen-bonding influences. This can be described using the least-squares planes through the groups; the defined planes, the r.m.s. deviation from planarity and the atom with the maximum deviation from the plane are as follows: O1/O2/C1–C7, 0.097, O1 = 0.184 (2) Å; N1/N2/O3/C9–C14, 0.053, O3 = 0.095 (2) Å; N3/N4/N5/C16, 0.001, C16 = 0.001 (2) Å; and C18–C23, 0.032, C18 = 0.05 (2) Å. The angles between adjacent planes are 77.33 (6), 87.22 (8) and 81.97 (9)°, respectively, and infer that the groups are mutually perpendicular.
With the exception of a water of crystallization the molecular structure of (II) (Fig. 2) differs from (I) solely in the insertion of a methylpropionamide group before the terminal benzene ring. This additional group has a dramatic effect on the overall structure and geometry of the molecule. The least-squares planes, including the additional methylpropionamide group, are defined as previously as follows: O1/O2/C1–C7, 0.057, O1 =-0.111 (2) Å; N1/N2/O3/C9–C14, 0.036, C10 = -0.059 (2) Å; N3/N4/N5/C16, 0.004, C16 = 0.006 (2) Å; C18/C19/N6/O4, 0.007, C19 = -0.012 (2) Å; and C21–C26, 0.002, C26 = -0.004 (2) Å; these planes make angles of 67.43 (5), 4.11 (12), 73.16 (13) and 75.76 (10)°. It can be seen from these angles that the twist at the methylene connecting the pyridinecarboxylic acid amide and the guanidinium group is now much smaller [dihedral angle = 4.11 (12)°], making the combined group essentially flat. The remaining two hinges revert to rotations approaching 90° [73.16 (13) and 75.76 (10)°], continuing the corkscrew-like twist of the molecule.
Both (I) and (II) exist as zwitterions with a formal negative charge associated with the carboxylate group and a formal positive charge with the guanidinium group. Analysis of the bond lengths shows the guanidinium to be in a resonance hybrid form and in both (I) and (II) the differences between the bonds are within 3 s.u. of their values. In (I) the carboxylate group is clearly in its resonance hybrid form [O1—C1 = 1.263 (3) Å and O2—C1 1.264 (3) Å]. A similar case exists for (II) although a possible asymmetrical lengthening in favour of the stronger hydrogen-bond environment can be seen [O1—C1 = 1.254 (3) Å and O2—C1 = 1.261 (3) Å].
With their plethora of potential hydrogen-bond donors and acceptors it is unsurprising that both (I) and (II) form three-dimensional networks, and it is the interaction between the carboxylate and guanidinium groups that is responsible for the formation of a basic supramolecular building block (Figs. 3 and 4).
In (I), the guanidinium group is in the trans configuration [atom H93 is on the opposite side to the NH2 group (N4)], so that it is an NH (N5) and an NH2 (N4) group that participate in the carboxylate hydrogen bonding [N4···O2iii and N5···O1iii; symmetry code: (iii) -x + 2,-y + 1, -z + 1], whereas in (II) the group is in the cis form [both H atoms (H3 and H5) are on the opposite side from the NH2 group (N4)] and both NH groups (N3 and N5) are oriented towards the carboxylate group [N3···O1i and N5..O1i; symmetry code: (i) -x - 1, -y, -z; see Tables 1 and 2 for details]. In (I) both carboxylate O atoms hydrogen bond to separate H atoms of the guanidinium group, but the interaction is not planar, with the amine twisting away below the plane of the carboxylate group (the angle between the least-squares planes through each group is 42.76°). The (inversion) symmetry-related interactions complete a dimer or 34-membered ring [N4 ···O2iii and N5···O1iii; symmetry code: (iii) -x + 2, -y + 1, -z + 1], as depicted in Fig. 3.
In (II), the approach of the carboxylate and quanidinium units is characterized by a single bifurcated hydrogen bond from O1i to N3 and N5. The hydrogen-bonding environment of the carboxylate unit is now very different from that in (I), with atom O1 acting as a receptor in three hydrogen bonds, two from the guanidinium unit (N3···O1i and N5···O1i) and one from the amide group of the pyridinecarboxylic acid amide group (N1···O1i), see Fig. 4.
Additionally, the benzoate rings are arranged parallel in (II) such that π–π interactions become relevant; the C2–C7 centroid to C2i–C7i centroid separation is 3.662 Å, with the perpendicular distance between the least-squares planes through each benzene ring being 3.372 Å, as depecited with a dashed line in Fig. 4. It is possible that the π–π interaction arises from the changed geometry of the guanidinium–carboxylate interaction compared to (I), but more likely provides a cooperative driving-force for this offset ion-pair interaction in combination with the hydrogen bonding from the propionamide group to the water molecule (N6···O1W) described below.
For the packing of (I), the dimer rings are stacked via other hydrogen bonds (N4···O2i and N1···O1) to form a one-dimensional molecular chain structure along the a axis. In the structure, guanidinium–carboxylate hydrogen-bonded pairs are connected via N4···O2i hydrogen bonds. A herringbone-like arrangement is also observed when the structure is viewed down the c axis. The supramolecular structure of (II) is punctuated by hydrogen-bonded rings formed around a centre of symmetry via two water molecules and two O atoms of two separate carboxylate groups [O1W···O2i and O1W···O2iv; symmetry code: (iv) x + 1, y + 1, z]. The water molecules also act as acceptors in hydrogen bonds to the methyl propionamide groups (N6···O1W) such that the rings connect four individual molecules.
As a general point hydrogen-bond interactions between a guanidinium and carboxylate group often form a subunit characterized by linear bidendate interactions. However, it is often observed that other competitive interactions can force a nonplanar geometry for this unit (e.g. Zafar et al., 2002). Preliminary searches of the Cambridge Structural Database (Allen, 2002) for such interactions show a wide range of geometries and will be the subject of a subsequent study.