Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2056989023007223/vm2289sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2056989023007223/vm2289Isup2.hkl |
CCDC reference: 2289098
Key indicators
Structure: I- Single-crystal X-ray study
- T = 90 K
- Mean (C-C) = 0.002 Å
- R factor = 0.021
- wR factor = 0.063
- Data-to-parameter ratio = 17.0
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT911_ALERT_3_C Missing FCF Refl Between Thmin & STh/L= 0.600 13 Report PLAT913_ALERT_3_C Missing # of Very Strong Reflections in FCF .... 5 Note
Alert level G PLAT480_ALERT_4_G Long H...A H-Bond Reported H5 ..CL1 . 2.98 Ang. PLAT480_ALERT_4_G Long H...A H-Bond Reported H8B ..O1 . 2.64 Ang. PLAT480_ALERT_4_G Long H...A H-Bond Reported H8C ..CL1 . 2.87 Ang. PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 5 Note PLAT790_ALERT_4_G Centre of Gravity not Within Unit Cell: Resd. # 4 Note H2 O PLAT802_ALERT_4_G CIF Input Record(s) with more than 80 Characters 1 Info PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 1 Note PLAT954_ALERT_1_G Reported (CIF) and Actual (FCF) Kmax Differ by . 1 Units PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 6 Info
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 2 ALERT level C = Check. Ensure it is not caused by an omission or oversight 9 ALERT level G = General information/check it is not something unexpected 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 7 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Data collection: APEX3 (Bruker, 2016); cell refinement: APEX3 (Bruker, 2016); data reduction: APEX3 (Bruker, 2016); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2019/2 (Sheldrick, 2015b); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELX (Sheldrick, 2008) and publCIF (Westrip, 2010).
C8H14N2O2+·2Cl−·H2O | F(000) = 512 |
Mr = 243.13 | Dx = 1.374 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 9.6493 (7) Å | Cell parameters from 9459 reflections |
b = 13.0873 (8) Å | θ = 2.4–27.5° |
c = 10.4634 (7) Å | µ = 0.53 mm−1 |
β = 117.188 (2)° | T = 90 K |
V = 1175.36 (14) Å3 | Irregular block, colourless |
Z = 4 | 0.32 × 0.30 × 0.22 mm |
Bruker D8 Venture dual source diffractometer | 2693 independent reflections |
Radiation source: microsource | 2505 reflections with I > 2σ(I) |
Detector resolution: 7.41 pixels mm-1 | Rint = 0.032 |
φ and ω scans | θmax = 27.5°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Krause et al., 2015) | h = −12→12 |
Tmin = 0.888, Tmax = 0.971 | k = −16→17 |
36719 measured reflections | l = −13→13 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.021 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.063 | w = 1/[σ2(Fo2) + (0.034P)2 + 0.2669P] where P = (Fo2 + 2Fc2)/3 |
S = 1.13 | (Δ/σ)max = 0.001 |
2693 reflections | Δρmax = 0.34 e Å−3 |
158 parameters | Δρmin = −0.22 e Å−3 |
0 restraints | Extinction correction: SHELXL-2019/2 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.008 (2) |
Experimental. The crystal was mounted using polyisobutene oil on the tip of a fine glass fibre, which was fastened in a copper mounting pin with electrical solder. It was placed directly into the cold gas stream of a liquid-nitrogen based cryostat (Hope, 1994; Parkin & Hope, 1998). Diffraction data were collected with the crystal at 90K, which is standard practice in this laboratory for the majority of flash-cooled crystals. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement progress was checked using Platon (Spek, 2020) and by an R-tensor (Parkin, 2000). The final model was further checked with the IUCr utility checkCIF. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.75930 (11) | 0.61398 (6) | 0.87704 (9) | 0.01338 (18) | |
H1N1 | 0.7194 (15) | 0.6712 (11) | 0.8938 (14) | 0.022 (3)* | |
H2N1 | 0.7151 (15) | 0.5598 (11) | 0.8907 (13) | 0.023 (3)* | |
H3N1 | 0.858 (2) | 0.6134 (10) | 0.9459 (17) | 0.028 (4)* | |
C1 | 0.74643 (11) | 0.61590 (6) | 0.73284 (10) | 0.01215 (19) | |
O1 | 0.47817 (9) | 0.62201 (5) | 0.65346 (8) | 0.01714 (17) | |
H1O | 0.392 (2) | 0.6321 (11) | 0.5805 (18) | 0.037 (4)* | |
Cl1 | 0.15713 (2) | 0.66738 (2) | 0.42367 (2) | 0.01449 (9) | |
C2 | 0.59693 (11) | 0.62072 (7) | 0.61890 (11) | 0.0128 (2) | |
N2 | 0.68764 (10) | 0.62236 (6) | 0.30958 (9) | 0.01355 (18) | |
H2N | 0.5849 (17) | 0.6154 (9) | 0.2501 (15) | 0.021 (3)* | |
Cl2 | 0.35654 (3) | 0.59763 (2) | 0.06980 (2) | 0.01665 (9) | |
C3 | 0.57844 (11) | 0.62244 (7) | 0.47882 (11) | 0.0132 (2) | |
H3 | 0.477593 | 0.625003 | 0.399057 | 0.016* | |
C4 | 0.71073 (12) | 0.62031 (7) | 0.45870 (11) | 0.0123 (2) | |
C5 | 0.85995 (11) | 0.61711 (7) | 0.57131 (11) | 0.0137 (2) | |
H5 | 0.948406 | 0.616984 | 0.554007 | 0.016* | |
C6 | 0.87688 (11) | 0.61406 (7) | 0.71058 (11) | 0.0136 (2) | |
H6 | 0.977827 | 0.610731 | 0.790114 | 0.016* | |
C7 | 0.73470 (12) | 0.72278 (8) | 0.27212 (11) | 0.0172 (2) | |
H7A | 0.699595 | 0.725867 | 0.168286 | 0.026* | |
H7B | 0.848358 | 0.729470 | 0.323059 | 0.026* | |
H7C | 0.686888 | 0.778611 | 0.300525 | 0.026* | |
C8 | 0.76558 (12) | 0.53561 (8) | 0.27443 (11) | 0.0184 (2) | |
H8A | 0.725765 | 0.531196 | 0.170044 | 0.028* | |
H8B | 0.743641 | 0.471597 | 0.310319 | 0.028* | |
H8C | 0.878337 | 0.547275 | 0.319913 | 0.028* | |
O1W | 1.05118 (10) | 0.61432 (6) | 1.09862 (9) | 0.0249 (2) | |
H1W1 | 1.075 (2) | 0.6295 (12) | 1.180 (2) | 0.041 (5)* | |
H2W1 | 1.137 (2) | 0.6187 (10) | 1.0942 (18) | 0.035 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0133 (4) | 0.0154 (4) | 0.0105 (4) | 0.0000 (3) | 0.0046 (4) | 0.0005 (3) |
C1 | 0.0142 (5) | 0.0115 (4) | 0.0107 (4) | −0.0004 (3) | 0.0056 (4) | 0.0000 (3) |
O1 | 0.0104 (4) | 0.0288 (4) | 0.0127 (4) | 0.0019 (3) | 0.0057 (3) | 0.0013 (3) |
Cl1 | 0.01198 (13) | 0.01708 (14) | 0.01299 (13) | −0.00068 (8) | 0.00449 (10) | 0.00011 (8) |
C2 | 0.0121 (5) | 0.0132 (4) | 0.0136 (5) | 0.0002 (3) | 0.0063 (4) | 0.0000 (3) |
N2 | 0.0119 (4) | 0.0173 (4) | 0.0112 (4) | −0.0011 (3) | 0.0050 (3) | −0.0009 (3) |
Cl2 | 0.01496 (14) | 0.01780 (14) | 0.01421 (14) | −0.00158 (8) | 0.00409 (10) | 0.00050 (8) |
C3 | 0.0113 (4) | 0.0146 (5) | 0.0121 (5) | 0.0002 (3) | 0.0038 (4) | −0.0006 (3) |
C4 | 0.0149 (5) | 0.0116 (4) | 0.0108 (4) | −0.0004 (3) | 0.0061 (4) | −0.0003 (3) |
C5 | 0.0113 (5) | 0.0157 (5) | 0.0145 (5) | −0.0002 (3) | 0.0062 (4) | 0.0003 (3) |
C6 | 0.0108 (5) | 0.0147 (5) | 0.0128 (5) | −0.0002 (3) | 0.0031 (4) | 0.0002 (3) |
C7 | 0.0190 (5) | 0.0174 (5) | 0.0157 (5) | 0.0015 (4) | 0.0084 (4) | 0.0044 (4) |
C8 | 0.0227 (5) | 0.0180 (5) | 0.0192 (5) | −0.0004 (4) | 0.0135 (4) | −0.0039 (4) |
O1W | 0.0160 (4) | 0.0415 (5) | 0.0139 (4) | −0.0006 (3) | 0.0039 (3) | −0.0056 (3) |
N1—C1 | 1.4565 (12) | C3—H3 | 0.9500 |
N1—H1N1 | 0.895 (14) | C4—C5 | 1.3831 (14) |
N1—H2N1 | 0.873 (14) | C5—C6 | 1.3908 (14) |
N1—H3N1 | 0.893 (17) | C5—H5 | 0.9500 |
C1—C6 | 1.3810 (14) | C6—H6 | 0.9500 |
C1—C2 | 1.3909 (14) | C7—H7A | 0.9800 |
O1—C2 | 1.3502 (12) | C7—H7B | 0.9800 |
O1—H1O | 0.843 (18) | C7—H7C | 0.9800 |
C2—C3 | 1.3934 (14) | C8—H8A | 0.9800 |
N2—C4 | 1.4721 (12) | C8—H8B | 0.9800 |
N2—C8 | 1.4976 (12) | C8—H8C | 0.9800 |
N2—C7 | 1.4998 (12) | O1W—H1W1 | 0.802 (19) |
N2—H2N | 0.903 (15) | O1W—H2W1 | 0.857 (18) |
C3—C4 | 1.3857 (14) | ||
C1—N1—H1N1 | 110.3 (8) | C5—C4—C3 | 122.95 (9) |
C1—N1—H2N1 | 111.5 (8) | C5—C4—N2 | 119.86 (9) |
H1N1—N1—H2N1 | 111.2 (13) | C3—C4—N2 | 117.19 (9) |
C1—N1—H3N1 | 113 (1) | C4—C5—C6 | 118.14 (9) |
H1N1—N1—H3N1 | 104.1 (12) | C4—C5—H5 | 120.9 |
H2N1—N1—H3N1 | 106.3 (12) | C6—C5—H5 | 120.9 |
C6—C1—C2 | 121.64 (9) | C1—C6—C5 | 119.76 (9) |
C6—C1—N1 | 121.44 (9) | C1—C6—H6 | 120.1 |
C2—C1—N1 | 116.93 (9) | C5—C6—H6 | 120.1 |
C2—O1—H1O | 111.4 (11) | N2—C7—H7A | 109.5 |
O1—C2—C1 | 116.47 (9) | N2—C7—H7B | 109.5 |
O1—C2—C3 | 124.41 (9) | H7A—C7—H7B | 109.5 |
C1—C2—C3 | 119.11 (9) | N2—C7—H7C | 109.5 |
C4—N2—C8 | 113.37 (8) | H7A—C7—H7C | 109.5 |
C4—N2—C7 | 112.07 (7) | H7B—C7—H7C | 109.5 |
C8—N2—C7 | 110.74 (8) | N2—C8—H8A | 109.5 |
C4—N2—H2N | 108.4 (9) | N2—C8—H8B | 109.5 |
C8—N2—H2N | 105.7 (8) | H8A—C8—H8B | 109.5 |
C7—N2—H2N | 106.1 (8) | N2—C8—H8C | 109.5 |
C4—C3—C2 | 118.39 (9) | H8A—C8—H8C | 109.5 |
C4—C3—H3 | 120.8 | H8B—C8—H8C | 109.5 |
C2—C3—H3 | 120.8 | H1W1—O1W—H2W1 | 103.4 (16) |
C6—C1—C2—O1 | 179.93 (8) | C7—N2—C4—C5 | −71.16 (11) |
N1—C1—C2—O1 | −0.70 (12) | C8—N2—C4—C3 | −125.32 (9) |
C6—C1—C2—C3 | 0.81 (13) | C7—N2—C4—C3 | 108.41 (9) |
N1—C1—C2—C3 | −179.82 (8) | C3—C4—C5—C6 | 1.17 (13) |
O1—C2—C3—C4 | −179.70 (8) | N2—C4—C5—C6 | −179.27 (8) |
C1—C2—C3—C4 | −0.65 (13) | C2—C1—C6—C5 | 0.03 (13) |
C2—C3—C4—C5 | −0.34 (13) | N1—C1—C6—C5 | −179.31 (8) |
C2—C3—C4—N2 | −179.91 (8) | C4—C5—C6—C1 | −0.99 (13) |
C8—N2—C4—C5 | 55.10 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H2N1···Cl2i | 0.873 (14) | 2.270 (14) | 3.1299 (9) | 168.5 (12) |
N1—H1N1···Cl1ii | 0.895 (14) | 2.257 (14) | 3.1364 (9) | 167.4 (12) |
N1—H3N1···O1W | 0.893 (17) | 1.819 (17) | 2.7093 (12) | 174.4 (14) |
O1—H1O···Cl1 | 0.843 (18) | 2.156 (18) | 2.9873 (8) | 168.9 (15) |
N2—H2N···Cl2 | 0.903 (15) | 2.161 (15) | 3.0467 (9) | 166.7 (12) |
C5—H5···Cl1iii | 0.95 | 2.98 | 3.8846 (10) | 160 |
C7—H7A···Cl1iv | 0.98 | 2.78 | 3.6641 (10) | 151 |
C7—H7B···Cl1iii | 0.98 | 2.79 | 3.7079 (11) | 156 |
C8—H8A···Cl2v | 0.98 | 2.82 | 3.6774 (10) | 147 |
C8—H8B···O1i | 0.98 | 2.64 | 3.4610 (13) | 142 |
C8—H8C···Cl1iii | 0.98 | 2.87 | 3.7809 (11) | 156 |
O1W—H2W1···Cl2vi | 0.857 (18) | 2.259 (18) | 3.1036 (9) | 168.7 (13) |
O1W—H1W1···Cl1vi | 0.802 (19) | 2.348 (19) | 3.1493 (9) | 176.4 (16) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x+1/2, −y+3/2, z+1/2; (iii) x+1, y, z; (iv) x+1/2, −y+3/2, z−1/2; (v) −x+1, −y+1, −z; (vi) x+1, y, z+1. |