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Three new 2,6-disubstituted thio­semicarbazone derivatives of pyridine, namely, 2-{amino­[6-(pyrrolidin-1-yl)pyridin-2-yl]methyl­idene}-N,N-di­methyl­hydrazine-1-carbo­thio­amide, C13H20N6S, 2-{amino­[6-(piperidin-1-yl)pyridin-2-yl]methyl­idene}-N,N-di­methyl­hydrazine-1-carbo­thio­amide, C14H22N6S, and 2-[amino­(6-phen­oxy­pyridin-2-yl)methyl­idene]-N,N-di­methyl­hydrazine-1-carbo­thio­amide monohydrate, C15H17N5OS·H2O, have been synthesized and characterized by NMR spectroscopy and low-temperature single-crystal X-ray diffraction. In addition, their anti­bacterial and anti-yeast activities have been determined. The ability of the tested com­pounds to inhibit bacterial growth was com­parable to vancomycin as a reference drug. Compared to isoniazid (MIC 0.125 and 8 µg ml−1), the com­pounds showed the ability to inhibit the growth of Mycobacterium tuberculosis to a moderate degree for the standard strain and at the same level or higher (MIC 4–8 µg ml−1) for the resistant strain. All three com­pounds adopt the zwitterionic form in the crystal structure regardless of the presence or absence of solvent mol­ecules.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229623005521/vp3029sup1.cif
Contains datablocks 4, 5, 6, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229623005521/vp30294sup2.hkl
Contains datablock 4

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229623005521/vp30295sup3.hkl
Contains datablock 5

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229623005521/vp30296sup4.hkl
Contains datablock 6

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229623005521/vp30294sup5.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229623005521/vp30295sup6.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229623005521/vp30296sup7.cml
Supplementary material

CCDC references: 2256902; 2256914; 2256903

Computing details top

For all structures, data collection: CrysAlis PRO (Rigaku OD, 2022); cell refinement: CrysAlis PRO (Rigaku OD, 2022); data reduction: CrysAlis PRO (Rigaku OD, 2022); program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009), ShelXle (Hübschle et al., 2011) and Mercury program (Macrae et al., 2020); software used to prepare material for publication: publCIF (Westrip, 2010) and OLEX2 (Dolomanov et al., 2009).

2-{Amino[6-(pyrrolidin-1-yl)pyridin-2-yl]methylidene}-N,N-dimethylhydrazine-1-carbothioamide (4) top
Crystal data top
C13H20N6SF(000) = 624
Mr = 292.41Dx = 1.332 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 9.1032 (2) ÅCell parameters from 19769 reflections
b = 10.9034 (1) Åθ = 5.0–78.4°
c = 15.3748 (2) ŵ = 1.97 mm1
β = 107.202 (2)°T = 100 K
V = 1457.78 (4) Å3Plate, clear light brown
Z = 40.66 × 0.53 × 0.07 mm
Data collection top
XtaLAB Synergy, Dualflex, Pilatus 300K
diffractometer
2926 independent reflections
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source2716 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.077
Detector resolution: 5.8140 pixels mm-1θmax = 78.5°, θmin = 5.1°
ω scansh = 1011
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2022)
k = 1313
Tmin = 0.463, Tmax = 1.000l = 1819
27991 measured reflections
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.037 w = 1/[σ2(Fo2) + (0.0553P)2 + 0.602P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.106(Δ/σ)max = 0.001
S = 1.10Δρmax = 0.53 e Å3
2926 reflectionsΔρmin = 0.37 e Å3
196 parametersExtinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0015 (4)
Primary atom site location: dual
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Diffraction measurements were performed using an XtaLAB Synergy Dualflex diffractometer, (Rigaku Oxford Diffraction, Poland–Japan–UK), with a Pilatus 300K detector at low temperature [100.0 (2) K] using Cu Kα radiation (1.54184 Å). Diffraction data were processed using CrysAlis PRO software (Rigaku Oxford Diffraction. CrysAlis PRO; Rigaku Oxford Diffraction Ltd, Yarnton, Oxfordshire, England). Solving and refinement of the crystal structure was performed with SHELX (Shedrick, 2008, 2015) using full-matrix least-squares minimization on F2. All H atoms (except those of NH2 and –NH– groups which could potentially be engaged in hydrogen bonds) were geometrically optimized and allowed for as riding atoms, with C—H = 0.95 Å for aromatic CH groups and 0.99 Å for secondary CH2 groups, with Uiso(H) = 1.2Ueq(C). In all the studied structures, the methyl H atoms were refined with C—H = 0.98 Å and Uiso(H) = 1.5Ueq(C). ShelXle software (Hübschle et al., 2011) was used to visualize the molecular structure. Graphical representation of the crystal structures was performed using the Mercury program (Macrae et al., 2020). PublCIF (Westrip, 2010) and OLEX2 programs (Dolomanov et al., 2009) were used for data preparation.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S10.04534 (4)0.75908 (3)0.37551 (2)0.01890 (14)
N10.18255 (14)0.65105 (12)0.24490 (9)0.0230 (3)
N20.04897 (14)0.55753 (11)0.27110 (8)0.0201 (3)
N30.20290 (14)0.56162 (12)0.31890 (8)0.0181 (3)
N40.24591 (17)0.39043 (12)0.24336 (9)0.0219 (3)
N220.50248 (14)0.59473 (11)0.40280 (8)0.0181 (3)
N310.68835 (14)0.71376 (12)0.50042 (9)0.0215 (3)
C10.03178 (16)0.64798 (13)0.29379 (10)0.0177 (3)
C40.29823 (17)0.48042 (13)0.30400 (9)0.0182 (3)
C110.29400 (18)0.73250 (15)0.26571 (12)0.0239 (3)
H11A0.3238150.7964360.2189820.036*
H11B0.2482210.7705780.3253310.036*
H11C0.3851100.6854090.2668400.036*
C120.2454 (2)0.56785 (16)0.16875 (13)0.0331 (4)
H12A0.3179170.6124070.1188900.050*
H12B0.2988710.5001770.1884340.050*
H12C0.1615590.5350290.1477340.050*
C210.46085 (17)0.48744 (13)0.35892 (9)0.0177 (3)
C230.64784 (16)0.60524 (14)0.45664 (10)0.0186 (3)
C240.75565 (17)0.50775 (15)0.46824 (10)0.0211 (3)
H240.8579930.5169590.5067610.025*
C250.70829 (18)0.40031 (15)0.42252 (10)0.0242 (3)
H250.7782450.3338090.4294670.029*
C260.55768 (18)0.38779 (15)0.36568 (10)0.0223 (3)
H260.5232920.3140570.3330960.027*
C320.58185 (17)0.81708 (14)0.48718 (11)0.0230 (3)
H32A0.4833890.7922700.4970550.028*
H32B0.5609850.8520350.4252810.028*
C330.66818 (19)0.90798 (16)0.55941 (12)0.0312 (4)
H33A0.6404060.9934670.5395700.037*
H33B0.6457870.8936610.6178000.037*
C340.8362 (2)0.88260 (16)0.56860 (13)0.0327 (4)
H34A0.9031500.9094180.6288100.039*
H34B0.8683870.9252250.5203770.039*
C350.84309 (18)0.74405 (14)0.55830 (11)0.0225 (3)
H35A0.9219690.7206860.5287420.027*
H35B0.8658810.7025340.6180850.027*
H4A0.311 (3)0.3524 (19)0.2181 (15)0.037 (5)*
H4B0.155 (3)0.3930 (18)0.2153 (14)0.030 (5)*
H30.235 (2)0.6166 (18)0.3602 (13)0.025 (5)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S10.0172 (2)0.0238 (2)0.0160 (2)0.00164 (12)0.00537 (16)0.00062 (12)
N10.0141 (6)0.0244 (7)0.0291 (7)0.0009 (5)0.0046 (5)0.0028 (5)
N20.0133 (6)0.0250 (6)0.0208 (6)0.0009 (5)0.0032 (5)0.0007 (5)
N30.0140 (6)0.0226 (6)0.0169 (6)0.0011 (5)0.0035 (5)0.0019 (5)
N40.0169 (7)0.0275 (7)0.0200 (6)0.0024 (5)0.0036 (6)0.0039 (5)
N220.0141 (6)0.0238 (6)0.0174 (6)0.0018 (5)0.0060 (5)0.0009 (5)
N310.0110 (6)0.0274 (7)0.0237 (7)0.0029 (5)0.0013 (5)0.0023 (5)
C10.0156 (7)0.0210 (7)0.0178 (7)0.0009 (5)0.0069 (6)0.0034 (5)
C40.0186 (8)0.0234 (7)0.0142 (7)0.0014 (6)0.0071 (6)0.0023 (5)
C110.0148 (8)0.0317 (8)0.0266 (8)0.0040 (6)0.0085 (6)0.0038 (6)
C120.0195 (8)0.0312 (9)0.0421 (10)0.0014 (6)0.0011 (7)0.0102 (7)
C210.0172 (7)0.0244 (7)0.0129 (7)0.0021 (6)0.0068 (6)0.0016 (5)
C230.0154 (7)0.0272 (7)0.0147 (7)0.0020 (6)0.0070 (6)0.0020 (6)
C240.0149 (7)0.0334 (8)0.0147 (7)0.0060 (6)0.0040 (6)0.0025 (6)
C250.0222 (8)0.0328 (8)0.0172 (7)0.0121 (6)0.0049 (6)0.0005 (6)
C260.0234 (8)0.0274 (8)0.0152 (7)0.0060 (6)0.0045 (6)0.0027 (6)
C320.0146 (8)0.0264 (8)0.0254 (8)0.0024 (6)0.0020 (6)0.0021 (6)
C330.0211 (8)0.0323 (9)0.0348 (9)0.0013 (7)0.0001 (7)0.0102 (7)
C340.0213 (9)0.0363 (9)0.0358 (10)0.0020 (7)0.0014 (7)0.0026 (7)
C350.0121 (8)0.0315 (8)0.0223 (8)0.0011 (6)0.0027 (6)0.0005 (6)
Geometric parameters (Å, º) top
S1—C11.7370 (15)C12—H12B0.9800
N1—C11.356 (2)C12—H12C0.9800
N1—C111.4534 (19)C21—C261.383 (2)
N1—C121.458 (2)C23—C241.422 (2)
N2—N31.3771 (17)C24—H240.9500
N2—C11.3366 (19)C24—C251.369 (2)
N3—C41.3065 (19)C25—H250.9500
N3—H30.86 (2)C25—C261.398 (2)
N4—C41.340 (2)C26—H260.9500
N4—H4A0.90 (2)C32—H32A0.9900
N4—H4B0.82 (2)C32—H32B0.9900
N22—C211.3477 (19)C32—C331.522 (2)
N22—C231.3422 (19)C33—H33A0.9900
N31—C231.357 (2)C33—H33B0.9900
N31—C321.4608 (19)C33—C341.519 (2)
N31—C351.464 (2)C34—H34A0.9900
C4—C211.473 (2)C34—H34B0.9900
C11—H11A0.9800C34—C351.522 (2)
C11—H11B0.9800C35—H35A0.9900
C11—H11C0.9800C35—H35B0.9900
C12—H12A0.9800
C1—N1—C11123.43 (13)N22—C23—C24122.11 (14)
C1—N1—C12121.48 (13)N31—C23—C24120.88 (14)
C11—N1—C12115.05 (13)C23—C24—H24120.8
C1—N2—N3112.84 (12)C25—C24—C23118.34 (14)
N2—N3—H3119.4 (13)C25—C24—H24120.8
C4—N3—N2120.55 (13)C24—C25—H25119.8
C4—N3—H3120.0 (13)C24—C25—C26120.43 (14)
C4—N4—H4A119.8 (14)C26—C25—H25119.8
C4—N4—H4B116.1 (14)C21—C26—C25117.11 (14)
H4A—N4—H4B118.9 (19)C21—C26—H26121.4
C23—N22—C21117.57 (12)C25—C26—H26121.4
C23—N31—C32122.10 (13)N31—C32—H32A111.2
C23—N31—C35124.72 (12)N31—C32—H32B111.2
C32—N31—C35112.97 (12)N31—C32—C33102.85 (12)
N1—C1—S1120.66 (11)H32A—C32—H32B109.1
N2—C1—S1124.58 (11)C33—C32—H32A111.2
N2—C1—N1114.71 (13)C33—C32—H32B111.2
N3—C4—N4120.02 (14)C32—C33—H33A111.0
N3—C4—C21118.11 (13)C32—C33—H33B111.0
N4—C4—C21121.79 (13)H33A—C33—H33B109.0
N1—C11—H11A109.5C34—C33—C32103.75 (13)
N1—C11—H11B109.5C34—C33—H33A111.0
N1—C11—H11C109.5C34—C33—H33B111.0
H11A—C11—H11B109.5C33—C34—H34A111.0
H11A—C11—H11C109.5C33—C34—H34B111.0
H11B—C11—H11C109.5C33—C34—C35104.03 (13)
N1—C12—H12A109.5H34A—C34—H34B109.0
N1—C12—H12B109.5C35—C34—H34A111.0
N1—C12—H12C109.5C35—C34—H34B111.0
H12A—C12—H12B109.5N31—C35—C34103.03 (12)
H12A—C12—H12C109.5N31—C35—H35A111.2
H12B—C12—H12C109.5N31—C35—H35B111.2
N22—C21—C4114.72 (12)C34—C35—H35A111.2
N22—C21—C26124.44 (14)C34—C35—H35B111.2
C26—C21—C4120.81 (13)H35A—C35—H35B109.1
N22—C23—N31117.00 (13)
N2—N3—C4—N41.6 (2)C12—N1—C1—N25.1 (2)
N2—N3—C4—C21178.40 (12)C21—N22—C23—N31179.97 (12)
N3—N2—C1—S10.74 (17)C21—N22—C23—C240.26 (19)
N3—N2—C1—N1176.74 (11)C23—N22—C21—C4177.63 (11)
N3—C4—C21—N2216.04 (18)C23—N22—C21—C260.0 (2)
N3—C4—C21—C26161.68 (13)C23—N31—C32—C33171.67 (14)
N4—C4—C21—N22167.22 (13)C23—N31—C35—C34165.39 (14)
N4—C4—C21—C2615.1 (2)C23—C24—C25—C260.3 (2)
N22—C21—C26—C250.4 (2)C24—C25—C26—C210.5 (2)
N22—C23—C24—C250.1 (2)C32—N31—C23—N222.6 (2)
N31—C23—C24—C25179.88 (14)C32—N31—C23—C24177.65 (13)
N31—C32—C33—C3430.65 (17)C32—N31—C35—C349.43 (17)
C1—N2—N3—C4179.19 (12)C32—C33—C34—C3537.12 (18)
C4—C21—C26—C25177.10 (13)C33—C34—C35—N3128.44 (17)
C11—N1—C1—S19.92 (19)C35—N31—C23—N22176.96 (13)
C11—N1—C1—N2172.49 (13)C35—N31—C23—C243.3 (2)
C12—N1—C1—S1172.51 (12)C35—N31—C32—C3313.35 (17)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C11—H11B···S10.982.563.0646 (17)112
C35—H35A···S1i0.992.923.7915 (16)147
N4—H4A···S1ii0.90 (2)2.44 (2)3.3250 (14)170.1 (19)
N3—H3···S10.86 (2)2.388 (19)2.8616 (13)115.2 (15)
Symmetry codes: (i) x+1, y, z; (ii) x+1/2, y1/2, z+1/2.
2-{Amino[6-(piperidin-1-yl)pyridin-2-yl]methylidene}-N,N-dimethylhydrazine-1-carbothioamide (5) top
Crystal data top
C14H22N6SF(000) = 1312
Mr = 306.44Dx = 1.290 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 9.3148 (2) ÅCell parameters from 46055 reflections
b = 9.3860 (1) Åθ = 4.8–78.7°
c = 36.2261 (5) ŵ = 1.85 mm1
β = 94.812 (1)°T = 100 K
V = 3156.04 (9) Å3Plate, clear light brown
Z = 80.38 × 0.28 × 0.06 mm
Data collection top
XtaLAB Synergy, Dualflex, Pilatus 300K
diffractometer
15028 measured reflections
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source15028 independent reflections
Mirror monochromator13699 reflections with I > 2σ(I)
Detector resolution: 5.8140 pixels mm-1θmax = 79.0°, θmin = 4.8°
ω scansh = 1011
Absorption correction: analytical
(CrysAlis PRO; Rigaku OD, 2022)
k = 1111
Tmin = 0.624, Tmax = 0.901l = 4345
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.049 w = 1/[σ2(Fo2) + (0.0853P)2 + 1.9565P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.147(Δ/σ)max = 0.001
S = 1.05Δρmax = 0.33 e Å3
15028 reflectionsΔρmin = 0.30 e Å3
409 parametersExtinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0006 (2)
Primary atom site location: dual
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refined as a 2-component twin.

Diffraction measurements were performed using an XtaLAB Synergy, Dualflex diffractometer, (Rigaku Oxford Diffraction, Poland–Japan–UK), with a Pilatus 300K detector at low temperature [100.0 (2) K] using Cu Kα radiation (1.54184 Å). Diffraction data were processed using CrysAlis PRO software (Rigaku Oxford Diffraction. CrysAlis PRO; Rigaku Oxford Diffraction Ltd, Yarnton, Oxfordshire, England). Solving and refinement of the crystal structure was performed with SHELX (Shedrick, 2008, 2015) using full-matrix least-squares minimization on F2. All H atoms (except those of NH2 and –NH– groups which could potentially be engaged in hydrogen bonds) were geometrically optimized and allowed for as riding atoms, with C—H = 0.95 Å for aromatic CH groups and 0.99 Å for secondary CH2 groups, with Uiso(H) = 1.2Ueq(C). In all the studied structures, the methyl H atoms were refined with C—H = 0.98 Å and Uiso(H) = 1.5Ueq(C). ShelXle software (Hübschle et al., 2011) was used to visualize the molecular structure. Graphical representation of the crystal structures was performed using the Mercury program (Macrae et al., 2020). PublCIF (Westrip, 2010) and OLEX2 programs (Dolomanov et al., 2009) were used for data preparation.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S1B0.58601 (6)0.15564 (6)0.54552 (2)0.02414 (16)
N1B0.8010 (2)0.1871 (2)0.50101 (5)0.0234 (4)
N2B0.7084 (2)0.3960 (2)0.51947 (5)0.0201 (4)
N3B0.6122 (2)0.4567 (2)0.54158 (5)0.0190 (4)
H3B0.566 (3)0.402 (3)0.5560 (9)0.036 (8)*
N4B0.6525 (2)0.6779 (2)0.51724 (6)0.0242 (4)
H4BA0.607 (3)0.756 (4)0.5081 (9)0.037 (8)*
H4BB0.706 (3)0.632 (3)0.5017 (9)0.033 (8)*
N22B0.4059 (2)0.54291 (19)0.58107 (5)0.0183 (4)
N31B0.2400 (2)0.4708 (2)0.62157 (5)0.0203 (4)
C1B0.7030 (2)0.2533 (2)0.52092 (6)0.0201 (4)
C4B0.5833 (2)0.5924 (2)0.53985 (6)0.0189 (4)
C11B0.7996 (3)0.0333 (3)0.49630 (7)0.0291 (5)
H11A0.8681480.0064260.4784120.044*
H11B0.7026270.0023130.4871610.044*
H11C0.8271600.0125370.5201560.044*
C12B0.9026 (3)0.2723 (3)0.48186 (7)0.0278 (5)
H12A0.9642400.2091340.4685260.042*
H12B0.9624480.3287550.4999630.042*
H12C0.8494680.3361710.4642110.042*
C21B0.4774 (2)0.6470 (2)0.56449 (6)0.0188 (4)
C23B0.3074 (2)0.5798 (2)0.60401 (6)0.0190 (4)
C24B0.2797 (3)0.7255 (2)0.61160 (6)0.0233 (5)
H24B0.2102800.7509660.6282090.028*
C25B0.3550 (3)0.8285 (2)0.59451 (7)0.0251 (5)
H25B0.3377650.9262000.5993810.030*
C26B0.4570 (2)0.7908 (2)0.56996 (6)0.0222 (5)
H26B0.5094080.8607240.5577010.027*
C32B0.2685 (2)0.3227 (2)0.61108 (6)0.0212 (4)
H32A0.2568710.2592570.6324580.025*
H32B0.3691250.3143670.6044690.025*
C33B0.1660 (3)0.2757 (3)0.57831 (6)0.0260 (5)
H33A0.1850430.3320560.5561420.031*
H33B0.1830010.1740550.5728570.031*
C34B0.0097 (3)0.2963 (3)0.58672 (7)0.0267 (5)
H34A0.0134950.2289830.6063950.032*
H34B0.0546540.2750810.5642460.032*
C35B0.0164 (3)0.4486 (3)0.59929 (7)0.0275 (5)
H35A0.1155870.4570600.6069680.033*
H35B0.0067820.5150310.5784100.033*
C36B0.0918 (3)0.4889 (3)0.63171 (7)0.0257 (5)
H36A0.0764880.5892750.6387900.031*
H36B0.0762580.4280130.6533310.031*
S1A0.90680 (6)0.50105 (5)0.84052 (2)0.01902 (15)
N1A1.1219 (2)0.3200 (2)0.86330 (5)0.0231 (4)
N2A1.03330 (19)0.28720 (19)0.80376 (5)0.0177 (4)
N3A0.9331 (2)0.33287 (19)0.77620 (5)0.0173 (4)
H3A0.865 (3)0.397 (3)0.7821 (8)0.027 (7)*
N4A1.0357 (2)0.1930 (2)0.73370 (5)0.0202 (4)
H4AA1.038 (3)0.154 (3)0.7114 (9)0.031 (8)*
H4AB1.095 (3)0.164 (3)0.7521 (9)0.032 (8)*
N22A0.73244 (19)0.43459 (18)0.72953 (5)0.0167 (4)
N31A0.5292 (2)0.57841 (19)0.72471 (5)0.0191 (4)
C1A1.0267 (2)0.3627 (2)0.83484 (6)0.0183 (4)
C4A0.9362 (2)0.2861 (2)0.74221 (6)0.0165 (4)
C11A1.1456 (3)0.4007 (3)0.89752 (7)0.0338 (6)
H11D1.1748860.3358040.9179690.051*
H11E1.0563030.4493490.9026470.051*
H11F1.2215970.4714250.8950270.051*
C12A1.2325 (3)0.2156 (3)0.85599 (7)0.0275 (5)
H12D1.2787030.1802800.8795300.041*
H12E1.3050110.2606000.8417180.041*
H12F1.1880040.1357810.8418170.041*
C21A0.8204 (2)0.3394 (2)0.71496 (6)0.0164 (4)
C23A0.6154 (2)0.4800 (2)0.70881 (6)0.0172 (4)
C24A0.5843 (2)0.4290 (2)0.67205 (6)0.0197 (4)
H24A0.5000970.4596570.6576280.024*
C25A0.6774 (2)0.3350 (2)0.65769 (6)0.0201 (4)
H25A0.6587210.3018370.6329710.024*
C26A0.8001 (2)0.2873 (2)0.67925 (6)0.0191 (4)
H26A0.8660670.2223260.6697510.023*
C32A0.5440 (2)0.5933 (2)0.76539 (6)0.0203 (4)
H32C0.5061820.6871330.7724320.024*
H32D0.6471060.5884040.7745270.024*
C33A0.4613 (3)0.4750 (2)0.78312 (6)0.0231 (5)
H33C0.4662960.4897590.8102560.028*
H33D0.5063890.3819630.7784030.028*
C34A0.3039 (3)0.4727 (3)0.76757 (7)0.0259 (5)
H34C0.2535400.5553950.7774980.031*
H34D0.2577300.3851290.7761470.031*
C35A0.2857 (2)0.4776 (2)0.72523 (7)0.0239 (5)
H35C0.3134670.3844310.7151590.029*
H35D0.1832180.4950440.7169260.029*
C36A0.3784 (2)0.5948 (2)0.71028 (6)0.0209 (4)
H36C0.3713960.5904960.6828790.025*
H36D0.3424380.6890490.7176150.025*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S1B0.0245 (3)0.0185 (3)0.0294 (3)0.0004 (2)0.0025 (2)0.0053 (2)
N1B0.0244 (10)0.0218 (9)0.0237 (10)0.0020 (7)0.0012 (8)0.0015 (7)
N2B0.0194 (9)0.0206 (9)0.0202 (9)0.0001 (7)0.0015 (7)0.0003 (7)
N3B0.0175 (9)0.0196 (9)0.0200 (9)0.0007 (7)0.0016 (7)0.0018 (7)
N4B0.0246 (11)0.0208 (10)0.0273 (10)0.0007 (8)0.0035 (8)0.0055 (8)
N22B0.0181 (9)0.0178 (8)0.0185 (9)0.0002 (7)0.0009 (7)0.0007 (7)
N31B0.0211 (10)0.0191 (9)0.0209 (9)0.0003 (7)0.0031 (7)0.0018 (7)
C1B0.0205 (11)0.0205 (10)0.0185 (10)0.0008 (8)0.0038 (8)0.0013 (8)
C4B0.0168 (11)0.0183 (10)0.0207 (10)0.0025 (8)0.0030 (8)0.0016 (8)
C11B0.0301 (13)0.0232 (12)0.0337 (13)0.0059 (10)0.0002 (10)0.0025 (10)
C12B0.0269 (13)0.0309 (12)0.0260 (12)0.0038 (10)0.0053 (9)0.0015 (10)
C21B0.0177 (11)0.0180 (10)0.0199 (10)0.0007 (8)0.0036 (8)0.0008 (8)
C23B0.0184 (11)0.0195 (10)0.0182 (10)0.0001 (8)0.0032 (8)0.0004 (8)
C24B0.0244 (12)0.0221 (11)0.0232 (11)0.0038 (9)0.0011 (9)0.0025 (9)
C25B0.0299 (13)0.0163 (10)0.0281 (12)0.0033 (9)0.0035 (9)0.0011 (9)
C26B0.0221 (11)0.0173 (10)0.0265 (11)0.0016 (8)0.0025 (9)0.0018 (8)
C32B0.0224 (11)0.0178 (10)0.0234 (11)0.0014 (8)0.0019 (8)0.0014 (8)
C33B0.0299 (13)0.0257 (11)0.0224 (11)0.0039 (9)0.0027 (9)0.0036 (9)
C34B0.0246 (12)0.0328 (12)0.0217 (11)0.0058 (10)0.0036 (9)0.0017 (9)
C35B0.0211 (12)0.0325 (13)0.0288 (12)0.0005 (9)0.0021 (9)0.0073 (10)
C36B0.0245 (12)0.0276 (12)0.0258 (12)0.0000 (9)0.0068 (9)0.0024 (9)
S1A0.0237 (3)0.0162 (3)0.0174 (3)0.00157 (19)0.00336 (19)0.00003 (18)
N1A0.0265 (10)0.0230 (9)0.0187 (9)0.0043 (8)0.0040 (7)0.0025 (7)
N2A0.0159 (9)0.0194 (9)0.0175 (9)0.0012 (7)0.0011 (7)0.0003 (7)
N3A0.0175 (9)0.0174 (8)0.0167 (9)0.0016 (7)0.0007 (7)0.0007 (7)
N4A0.0193 (10)0.0217 (9)0.0192 (9)0.0033 (7)0.0006 (7)0.0033 (7)
N22A0.0156 (9)0.0155 (8)0.0191 (9)0.0013 (6)0.0012 (7)0.0000 (7)
N31A0.0184 (9)0.0172 (8)0.0212 (9)0.0013 (7)0.0009 (7)0.0004 (7)
C1A0.0199 (11)0.0172 (9)0.0178 (10)0.0037 (8)0.0010 (8)0.0014 (8)
C4A0.0171 (10)0.0145 (9)0.0178 (10)0.0016 (7)0.0012 (8)0.0010 (7)
C11A0.0456 (16)0.0332 (13)0.0205 (12)0.0057 (11)0.0093 (10)0.0053 (10)
C12A0.0264 (13)0.0295 (12)0.0258 (12)0.0070 (10)0.0036 (9)0.0013 (9)
C21A0.0150 (10)0.0152 (9)0.0190 (10)0.0024 (7)0.0022 (8)0.0010 (7)
C23A0.0166 (10)0.0146 (9)0.0203 (10)0.0023 (8)0.0017 (8)0.0017 (8)
C24A0.0170 (11)0.0203 (10)0.0211 (10)0.0010 (8)0.0021 (8)0.0018 (8)
C25A0.0207 (11)0.0222 (10)0.0170 (10)0.0034 (8)0.0003 (8)0.0000 (8)
C26A0.0197 (11)0.0190 (10)0.0188 (10)0.0000 (8)0.0029 (8)0.0001 (8)
C32A0.0196 (11)0.0185 (10)0.0226 (11)0.0020 (8)0.0006 (8)0.0038 (8)
C33A0.0287 (12)0.0194 (10)0.0215 (11)0.0030 (9)0.0041 (9)0.0003 (8)
C34A0.0239 (12)0.0221 (11)0.0328 (13)0.0003 (9)0.0085 (9)0.0000 (9)
C35A0.0179 (11)0.0204 (11)0.0331 (13)0.0001 (8)0.0005 (9)0.0032 (9)
C36A0.0177 (11)0.0188 (10)0.0259 (11)0.0036 (8)0.0002 (8)0.0002 (8)
Geometric parameters (Å, º) top
S1B—C1B1.727 (2)S1A—C1A1.736 (2)
N1B—C1B1.360 (3)N1A—C1A1.362 (3)
N1B—C11B1.454 (3)N1A—C11A1.454 (3)
N1B—C12B1.458 (3)N1A—C12A1.463 (3)
N2B—N3B1.375 (3)N2A—N3A1.377 (2)
N2B—C1B1.341 (3)N2A—C1A1.336 (3)
N3B—H3B0.87 (3)N3A—H3A0.91 (3)
N3B—C4B1.303 (3)N3A—C4A1.310 (3)
N4B—H4BA0.90 (3)N4A—H4AA0.89 (3)
N4B—H4BB0.89 (3)N4A—H4AB0.87 (3)
N4B—C4B1.349 (3)N4A—C4A1.329 (3)
N22B—C21B1.352 (3)N22A—C21A1.349 (3)
N22B—C23B1.335 (3)N22A—C23A1.341 (3)
N31B—C23B1.383 (3)N31A—C23A1.380 (3)
N31B—C32B1.471 (3)N31A—C32A1.475 (3)
N31B—C36B1.467 (3)N31A—C36A1.465 (3)
C4B—C21B1.476 (3)C4A—C21A1.486 (3)
C11B—H11A0.9800C11A—H11D0.9800
C11B—H11B0.9800C11A—H11E0.9800
C11B—H11C0.9800C11A—H11F0.9800
C12B—H12A0.9800C12A—H12D0.9800
C12B—H12B0.9800C12A—H12E0.9800
C12B—H12C0.9800C12A—H12F0.9800
C21B—C26B1.380 (3)C21A—C26A1.381 (3)
C23B—C24B1.422 (3)C23A—C24A1.422 (3)
C24B—H24B0.9500C24A—H24A0.9500
C24B—C25B1.372 (3)C24A—C25A1.370 (3)
C25B—H25B0.9500C25A—H25A0.9500
C25B—C26B1.400 (3)C25A—C26A1.403 (3)
C26B—H26B0.9500C26A—H26A0.9500
C32B—H32A0.9900C32A—H32C0.9900
C32B—H32B0.9900C32A—H32D0.9900
C32B—C33B1.525 (3)C32A—C33A1.524 (3)
C33B—H33A0.9900C33A—H33C0.9900
C33B—H33B0.9900C33A—H33D0.9900
C33B—C34B1.524 (3)C33A—C34A1.526 (3)
C34B—H34A0.9900C34A—H34C0.9900
C34B—H34B0.9900C34A—H34D0.9900
C34B—C35B1.526 (4)C34A—C35A1.530 (3)
C35B—H35A0.9900C35A—H35C0.9900
C35B—H35B0.9900C35A—H35D0.9900
C35B—C36B1.530 (3)C35A—C36A1.526 (3)
C36B—H36A0.9900C36A—H36C0.9900
C36B—H36B0.9900C36A—H36D0.9900
C1B—N1B—C11B121.1 (2)C1A—N1A—C11A122.3 (2)
C1B—N1B—C12B119.57 (19)C1A—N1A—C12A118.93 (19)
C11B—N1B—C12B119.2 (2)C11A—N1A—C12A116.40 (19)
C1B—N2B—N3B111.25 (18)C1A—N2A—N3A111.69 (18)
N2B—N3B—H3B119 (2)N2A—N3A—H3A118.5 (18)
C4B—N3B—N2B121.32 (19)C4A—N3A—N2A120.72 (18)
C4B—N3B—H3B120 (2)C4A—N3A—H3A120.7 (18)
H4BA—N4B—H4BB116 (3)H4AA—N4A—H4AB120 (3)
C4B—N4B—H4BA118 (2)C4A—N4A—H4AA123.5 (19)
C4B—N4B—H4BB114 (2)C4A—N4A—H4AB116 (2)
C23B—N22B—C21B118.65 (19)C23A—N22A—C21A118.94 (18)
C23B—N31B—C32B118.79 (18)C23A—N31A—C32A118.13 (17)
C23B—N31B—C36B120.13 (19)C23A—N31A—C36A119.65 (18)
C36B—N31B—C32B111.61 (18)C36A—N31A—C32A110.66 (17)
N1B—C1B—S1B120.79 (17)N1A—C1A—S1A120.96 (16)
N2B—C1B—S1B125.27 (18)N2A—C1A—S1A124.91 (17)
N2B—C1B—N1B113.9 (2)N2A—C1A—N1A114.1 (2)
N3B—C4B—N4B120.2 (2)N3A—C4A—N4A120.6 (2)
N3B—C4B—C21B117.16 (19)N3A—C4A—C21A116.10 (19)
N4B—C4B—C21B122.6 (2)N4A—C4A—C21A123.28 (19)
N1B—C11B—H11A109.5N1A—C11A—H11D109.5
N1B—C11B—H11B109.5N1A—C11A—H11E109.5
N1B—C11B—H11C109.5N1A—C11A—H11F109.5
H11A—C11B—H11B109.5H11D—C11A—H11E109.5
H11A—C11B—H11C109.5H11D—C11A—H11F109.5
H11B—C11B—H11C109.5H11E—C11A—H11F109.5
N1B—C12B—H12A109.5N1A—C12A—H12D109.5
N1B—C12B—H12B109.5N1A—C12A—H12E109.5
N1B—C12B—H12C109.5N1A—C12A—H12F109.5
H12A—C12B—H12B109.5H12D—C12A—H12E109.5
H12A—C12B—H12C109.5H12D—C12A—H12F109.5
H12B—C12B—H12C109.5H12E—C12A—H12F109.5
N22B—C21B—C4B113.37 (18)N22A—C21A—C4A113.19 (18)
N22B—C21B—C26B124.4 (2)N22A—C21A—C26A124.12 (19)
C26B—C21B—C4B122.3 (2)C26A—C21A—C4A122.51 (19)
N22B—C23B—N31B117.19 (19)N22A—C23A—N31A116.94 (19)
N22B—C23B—C24B121.0 (2)N22A—C23A—C24A120.60 (19)
N31B—C23B—C24B121.7 (2)N31A—C23A—C24A122.45 (19)
C23B—C24B—H24B120.6C23A—C24A—H24A120.4
C25B—C24B—C23B118.8 (2)C25A—C24A—C23A119.2 (2)
C25B—C24B—H24B120.6C25A—C24A—H24A120.4
C24B—C25B—H25B119.7C24A—C25A—H25A119.8
C24B—C25B—C26B120.6 (2)C24A—C25A—C26A120.4 (2)
C26B—C25B—H25B119.7C26A—C25A—H25A119.8
C21B—C26B—C25B116.6 (2)C21A—C26A—C25A116.7 (2)
C21B—C26B—H26B121.7C21A—C26A—H26A121.6
C25B—C26B—H26B121.7C25A—C26A—H26A121.6
N31B—C32B—H32A109.4N31A—C32A—H32C109.6
N31B—C32B—H32B109.4N31A—C32A—H32D109.6
N31B—C32B—C33B111.07 (19)N31A—C32A—C33A110.10 (18)
H32A—C32B—H32B108.0H32C—C32A—H32D108.2
C33B—C32B—H32A109.4C33A—C32A—H32C109.6
C33B—C32B—H32B109.4C33A—C32A—H32D109.6
C32B—C33B—H33A109.5C32A—C33A—H33C109.4
C32B—C33B—H33B109.5C32A—C33A—H33D109.4
H33A—C33B—H33B108.1C32A—C33A—C34A111.02 (19)
C34B—C33B—C32B110.73 (19)H33C—C33A—H33D108.0
C34B—C33B—H33A109.5C34A—C33A—H33C109.4
C34B—C33B—H33B109.5C34A—C33A—H33D109.4
C33B—C34B—H34A109.5C33A—C34A—H34C109.0
C33B—C34B—H34B109.5C33A—C34A—H34D109.0
C33B—C34B—C35B110.9 (2)C33A—C34A—C35A113.10 (19)
H34A—C34B—H34B108.0H34C—C34A—H34D107.8
C35B—C34B—H34A109.5C35A—C34A—H34C109.0
C35B—C34B—H34B109.5C35A—C34A—H34D109.0
C34B—C35B—H35A109.6C34A—C35A—H35C109.4
C34B—C35B—H35B109.6C34A—C35A—H35D109.4
C34B—C35B—C36B110.4 (2)H35C—C35A—H35D108.0
H35A—C35B—H35B108.1C36A—C35A—C34A111.02 (19)
C36B—C35B—H35A109.6C36A—C35A—H35C109.4
C36B—C35B—H35B109.6C36A—C35A—H35D109.4
N31B—C36B—C35B110.62 (19)N31A—C36A—C35A110.60 (18)
N31B—C36B—H36A109.5N31A—C36A—H36C109.5
N31B—C36B—H36B109.5N31A—C36A—H36D109.5
C35B—C36B—H36A109.5C35A—C36A—H36C109.5
C35B—C36B—H36B109.5C35A—C36A—H36D109.5
H36A—C36B—H36B108.1H36C—C36A—H36D108.1
N2B—N3B—C4B—N4B2.9 (3)N2A—N3A—C4A—N4A0.3 (3)
N2B—N3B—C4B—C21B179.44 (18)N2A—N3A—C4A—C21A178.33 (18)
N3B—N2B—C1B—S1B2.6 (3)N3A—N2A—C1A—S1A0.4 (3)
N3B—N2B—C1B—N1B176.89 (17)N3A—N2A—C1A—N1A178.79 (18)
N3B—C4B—C21B—N22B10.9 (3)N3A—C4A—C21A—N22A2.9 (3)
N3B—C4B—C21B—C26B168.3 (2)N3A—C4A—C21A—C26A172.49 (19)
N4B—C4B—C21B—N22B171.5 (2)N4A—C4A—C21A—N22A179.20 (19)
N4B—C4B—C21B—C26B9.3 (3)N4A—C4A—C21A—C26A5.4 (3)
N22B—C21B—C26B—C25B0.1 (3)N22A—C21A—C26A—C25A1.8 (3)
N22B—C23B—C24B—C25B0.8 (3)N22A—C23A—C24A—C25A1.5 (3)
N31B—C23B—C24B—C25B177.0 (2)N31A—C23A—C24A—C25A177.8 (2)
N31B—C32B—C33B—C34B55.5 (3)N31A—C32A—C33A—C34A55.2 (2)
C1B—N2B—N3B—C4B169.0 (2)C1A—N2A—N3A—C4A170.24 (19)
C4B—C21B—C26B—C25B178.95 (19)C4A—C21A—C26A—C25A172.99 (19)
C11B—N1B—C1B—S1B7.2 (3)C11A—N1A—C1A—S1A10.4 (3)
C11B—N1B—C1B—N2B173.3 (2)C11A—N1A—C1A—N2A171.1 (2)
C12B—N1B—C1B—S1B177.29 (17)C12A—N1A—C1A—S1A172.44 (17)
C12B—N1B—C1B—N2B2.3 (3)C12A—N1A—C1A—N2A9.1 (3)
C21B—N22B—C23B—N31B177.67 (18)C21A—N22A—C23A—N31A179.39 (18)
C21B—N22B—C23B—C24B1.3 (3)C21A—N22A—C23A—C24A0.1 (3)
C23B—N22B—C21B—C4B179.99 (18)C23A—N22A—C21A—C4A173.47 (18)
C23B—N22B—C21B—C26B0.8 (3)C23A—N22A—C21A—C26A1.8 (3)
C23B—N31B—C32B—C33B87.3 (2)C23A—N31A—C32A—C33A80.2 (2)
C23B—N31B—C36B—C35B86.3 (2)C23A—N31A—C36A—C35A79.9 (2)
C23B—C24B—C25B—C26B0.2 (3)C23A—C24A—C25A—C26A1.4 (3)
C24B—C25B—C26B—C21B0.6 (3)C24A—C25A—C26A—C21A0.2 (3)
C32B—N31B—C23B—N22B6.5 (3)C32A—N31A—C23A—N22A18.4 (3)
C32B—N31B—C23B—C24B177.1 (2)C32A—N31A—C23A—C24A162.33 (19)
C32B—N31B—C36B—C35B59.6 (2)C32A—N31A—C36A—C35A62.7 (2)
C32B—C33B—C34B—C35B53.1 (3)C32A—C33A—C34A—C35A48.6 (3)
C33B—C34B—C35B—C36B53.6 (3)C33A—C34A—C35A—C36A48.0 (3)
C34B—C35B—C36B—N31B56.6 (3)C34A—C35A—C36A—N31A54.3 (2)
C36B—N31B—C23B—N22B150.1 (2)C36A—N31A—C23A—N22A158.24 (19)
C36B—N31B—C23B—C24B33.5 (3)C36A—N31A—C23A—C24A22.5 (3)
C36B—N31B—C32B—C33B59.2 (2)C36A—N31A—C32A—C33A63.1 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N3B—H3B···S1B0.87 (3)2.35 (3)2.841 (2)116 (2)
N4B—H4BA···S1Bi0.90 (3)2.66 (3)3.421 (2)143 (3)
C24B—H24B···S1Aii0.952.863.636 (2)139
C26B—H26B···S1Biii0.952.903.759 (2)151
N3A—H3A···S1A0.91 (3)2.34 (3)2.8420 (19)115 (2)
N4A—H4AA···S1Aiv0.89 (3)2.45 (3)3.317 (2)164 (3)
C24A—H24A···N31B0.952.663.578 (3)164
C26A—H26A···S1Aiv0.953.013.938 (2)166
C36A—H36C···N31B0.992.693.557 (3)146
Symmetry codes: (i) x+1, y+1, z+1; (ii) x+1, y+1/2, z+3/2; (iii) x, y+1, z; (iv) x+2, y1/2, z+3/2.
2-[Amino(6-phenoxypyridin-2-yl)methylidene]-N,N-dimethylhydrazine-1-carbothioamide monohydrate (6) top
Crystal data top
C15H17N5OS·H2OF(000) = 704
Mr = 333.41Dx = 1.382 Mg m3
Monoclinic, IaCu Kα radiation, λ = 1.54184 Å
a = 7.96887 (14) ÅCell parameters from 4154 reflections
b = 10.94707 (18) Åθ = 4.7–78.2°
c = 18.4759 (3) ŵ = 1.95 mm1
β = 96.2420 (16)°T = 100 K
V = 1602.20 (5) Å3Block, clear light yellow
Z = 40.89 × 0.15 × 0.11 mm
Data collection top
XtaLAB Synergy, Dualflex, Pilatus 300K
diffractometer
2248 independent reflections
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source2238 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.018
Detector resolution: 5.8140 pixels mm-1θmax = 78.4°, θmin = 4.7°
ω scansh = 810
Absorption correction: gaussian
(CrysAlis PRO; Rigaku OD, 2022)
k = 138
Tmin = 0.300, Tmax = 1.000l = 2320
4550 measured reflections
Refinement top
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
Least-squares matrix: full w = 1/[σ2(Fo2) + (0.0341P)2 + 0.5698P]
where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.022(Δ/σ)max < 0.001
wR(F2) = 0.058Δρmax = 0.21 e Å3
S = 1.05Δρmin = 0.13 e Å3
2248 reflectionsExtinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
231 parametersExtinction coefficient: 0.0037 (2)
2 restraintsAbsolute structure: Flack x determined using 690 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Hydrogen site location: mixedAbsolute structure parameter: 0.012 (11)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Diffraction measurements were performed using an XtaLAB Synergy, Dualflex diffractometer, (Rigaku Oxford Diffraction, Poland–Japan–UK), with a Pilatus 300K detector at low temperature [100.0 (2) K] using Cu Kα radiation (1.54184 Å). Diffraction data were processed using CrysAlis PRO software (Rigaku Oxford Diffraction. CrysAlis PRO; Rigaku Oxford Diffraction Ltd, Yarnton, Oxfordshire, England). Solving and refinement of the crystal structure was performed with SHELX (Shedrick, 2008, 2015) using full-matrix least-squares minimization on F2. All H atoms (except those of NH2 and –NH– groups which could potentially be engaged in hydrogen bonds) were geometrically optimized and allowed for as riding atoms, with C—H = 0.95 Å for aromatic CH groups and 0.99 Å for secondary CH2 groups, with Uiso(H) = 1.2Ueq(C). In all the studied structures, the methyl H atoms were refined with C—H = 0.98 Å and Uiso(H) = 1.5Ueq(C). ShelXle software (Hübschle et al., 2011) was used to visualize the molecular structure. Graphical representation of the crystal structures was performed using the Mercury program (Macrae et al., 2020). publCIF (Westrip, 2010) and OLEX2 programs (Dolomanov et al., 2009) were used for data preparation.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S10.44296 (5)0.13644 (4)0.44382 (3)0.01699 (14)
O230.8357 (2)0.39728 (14)0.66962 (9)0.0224 (3)
N10.2453 (2)0.20072 (15)0.32176 (10)0.0177 (4)
N20.3704 (2)0.35990 (15)0.38403 (10)0.0159 (4)
N30.4771 (2)0.39687 (15)0.44359 (10)0.0148 (4)
H30.531 (3)0.345 (2)0.4784 (16)0.016 (6)*
N40.4151 (2)0.59408 (17)0.41104 (11)0.0180 (4)
H4A0.420 (3)0.677 (3)0.4210 (15)0.027 (8)*
H4B0.346 (4)0.559 (3)0.3758 (18)0.030 (7)*
N220.6693 (2)0.45894 (16)0.56467 (10)0.0153 (4)
C10.3494 (3)0.23926 (18)0.38007 (11)0.0149 (4)
C40.4962 (2)0.51462 (18)0.45634 (11)0.0143 (4)
C110.1929 (3)0.0734 (2)0.31350 (13)0.0201 (5)
H11A0.1165770.0640460.2685380.030*
H11B0.1343140.0490860.3551970.030*
H11C0.2924410.0216320.3112170.030*
C120.1644 (3)0.29158 (19)0.27192 (12)0.0189 (4)
H12A0.2507300.3444010.2544090.028*
H12B0.0869060.3411440.2973730.028*
H12C0.1012670.2502910.2304680.028*
C210.6110 (2)0.55207 (18)0.52060 (12)0.0148 (4)
C230.7730 (2)0.4871 (2)0.62228 (11)0.0171 (4)
C240.8290 (3)0.6053 (2)0.64053 (12)0.0193 (4)
H240.9044170.6207660.6829940.023*
C250.7705 (3)0.6984 (2)0.59448 (12)0.0196 (4)
H250.8070240.7799340.6042880.024*
C260.6573 (3)0.67264 (19)0.53328 (12)0.0174 (4)
H260.6135160.7358270.5013930.021*
C310.7604 (3)0.28104 (19)0.66677 (12)0.0188 (4)
C320.7688 (3)0.2050 (2)0.60747 (13)0.0217 (5)
H320.8223910.2310090.5666410.026*
C330.6966 (3)0.0894 (2)0.60922 (14)0.0270 (5)
H330.7007380.0357070.5690640.032*
C340.6188 (3)0.0519 (2)0.66882 (15)0.0294 (5)
H340.5669890.0262280.6687770.035*
C350.6163 (3)0.1280 (2)0.72848 (15)0.0288 (6)
H350.5653930.1012550.7698630.035*
C360.6885 (3)0.2438 (2)0.72785 (14)0.0245 (5)
H360.6883170.2962910.7687660.029*
O1W0.3474 (2)0.84344 (15)0.42837 (10)0.0258 (4)
H1WA0.239 (6)0.849 (3)0.429 (2)0.053 (10)*
H1WB0.383 (5)0.918 (4)0.4279 (18)0.043 (9)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S10.0205 (2)0.0129 (2)0.0163 (2)0.00138 (18)0.00362 (17)0.0000 (2)
O230.0235 (8)0.0200 (8)0.0214 (8)0.0016 (6)0.0078 (6)0.0004 (6)
N10.0225 (10)0.0121 (8)0.0167 (9)0.0016 (7)0.0054 (7)0.0003 (7)
N20.0172 (9)0.0149 (9)0.0150 (9)0.0005 (6)0.0019 (7)0.0007 (7)
N30.0158 (9)0.0130 (8)0.0149 (8)0.0001 (6)0.0017 (7)0.0004 (7)
N40.0206 (9)0.0135 (9)0.0189 (9)0.0001 (7)0.0022 (7)0.0004 (8)
N220.0141 (8)0.0160 (8)0.0158 (9)0.0008 (6)0.0010 (7)0.0001 (7)
C10.0163 (9)0.0140 (9)0.0142 (10)0.0007 (7)0.0018 (8)0.0000 (7)
C40.0130 (9)0.0144 (9)0.0160 (10)0.0001 (7)0.0044 (7)0.0012 (8)
C110.0245 (11)0.0150 (10)0.0195 (11)0.0046 (8)0.0029 (9)0.0017 (8)
C120.0215 (10)0.0174 (10)0.0169 (11)0.0017 (8)0.0022 (9)0.0017 (8)
C210.0138 (9)0.0158 (10)0.0156 (10)0.0010 (8)0.0050 (7)0.0016 (8)
C230.0147 (9)0.0203 (10)0.0166 (10)0.0001 (8)0.0024 (8)0.0013 (8)
C240.0165 (10)0.0246 (11)0.0167 (11)0.0053 (8)0.0017 (8)0.0043 (9)
C250.0220 (11)0.0175 (10)0.0200 (11)0.0066 (8)0.0047 (9)0.0046 (8)
C260.0183 (10)0.0168 (10)0.0177 (10)0.0021 (8)0.0042 (8)0.0002 (8)
C310.0145 (10)0.0189 (10)0.0215 (11)0.0015 (7)0.0047 (8)0.0030 (8)
C320.0222 (11)0.0222 (11)0.0198 (12)0.0034 (8)0.0014 (9)0.0032 (8)
C330.0325 (13)0.0191 (11)0.0261 (13)0.0030 (9)0.0111 (10)0.0007 (10)
C340.0262 (12)0.0227 (11)0.0361 (14)0.0012 (9)0.0105 (10)0.0123 (10)
C350.0217 (12)0.0344 (13)0.0300 (13)0.0044 (9)0.0017 (10)0.0160 (11)
C360.0235 (11)0.0284 (11)0.0207 (11)0.0080 (9)0.0010 (9)0.0041 (9)
O1W0.0262 (10)0.0151 (8)0.0360 (10)0.0018 (7)0.0035 (8)0.0029 (7)
Geometric parameters (Å, º) top
S1—C11.738 (2)C12—H12C0.9800
O23—C231.373 (3)C21—C261.384 (3)
O23—C311.405 (3)C23—C241.399 (3)
N1—C11.354 (3)C24—H240.9500
N1—C111.458 (3)C24—C251.376 (3)
N1—C121.457 (3)C25—H250.9500
N2—N31.376 (2)C25—C261.397 (3)
N2—C11.332 (3)C26—H260.9500
N3—H30.93 (3)C31—C321.383 (3)
N3—C41.316 (3)C31—C361.382 (3)
N4—H4A0.93 (3)C32—H320.9500
N4—H4B0.90 (3)C32—C331.392 (3)
N4—C41.325 (3)C33—H330.9500
N22—C211.355 (3)C33—C341.383 (4)
N22—C231.311 (3)C34—H340.9500
C4—C211.476 (3)C34—C351.383 (4)
C11—H11A0.9800C35—H350.9500
C11—H11B0.9800C35—C361.392 (4)
C11—H11C0.9800C36—H360.9500
C12—H12A0.9800O1W—H1WA0.87 (4)
C12—H12B0.9800O1W—H1WB0.86 (4)
C23—O23—C31120.02 (16)C26—C21—C4122.12 (19)
C1—N1—C11121.67 (17)O23—C23—C24115.13 (18)
C1—N1—C12118.74 (17)N22—C23—O23120.16 (18)
C12—N1—C11118.96 (17)N22—C23—C24124.7 (2)
C1—N2—N3113.48 (17)C23—C24—H24121.4
N2—N3—H3125.1 (16)C25—C24—C23117.3 (2)
C4—N3—N2118.72 (18)C25—C24—H24121.4
C4—N3—H3116.0 (16)C24—C25—H25120.1
H4A—N4—H4B125 (3)C24—C25—C26119.79 (19)
C4—N4—H4A120.9 (17)C26—C25—H25120.1
C4—N4—H4B113 (2)C21—C26—C25117.8 (2)
C23—N22—C21117.13 (17)C21—C26—H26121.1
N1—C1—S1121.21 (15)C25—C26—H26121.1
N2—C1—S1124.25 (16)C32—C31—O23121.2 (2)
N2—C1—N1114.53 (18)C36—C31—O23116.7 (2)
N3—C4—N4119.4 (2)C36—C31—C32122.0 (2)
N3—C4—C21117.75 (18)C31—C32—H32120.9
N4—C4—C21122.86 (18)C31—C32—C33118.2 (2)
N1—C11—H11A109.5C33—C32—H32120.9
N1—C11—H11B109.5C32—C33—H33119.7
N1—C11—H11C109.5C34—C33—C32120.7 (2)
H11A—C11—H11B109.5C34—C33—H33119.7
H11A—C11—H11C109.5C33—C34—H34119.9
H11B—C11—H11C109.5C33—C34—C35120.1 (2)
N1—C12—H12A109.5C35—C34—H34119.9
N1—C12—H12B109.5C34—C35—H35120.0
N1—C12—H12C109.5C34—C35—C36120.0 (2)
H12A—C12—H12B109.5C36—C35—H35120.0
H12A—C12—H12C109.5C31—C36—C35119.0 (2)
H12B—C12—H12C109.5C31—C36—H36120.5
N22—C21—C4114.62 (17)C35—C36—H36120.5
N22—C21—C26123.24 (19)H1WA—O1W—H1WB106 (3)
O23—C23—C24—C25179.61 (19)C12—N1—C1—N22.0 (3)
O23—C31—C32—C33177.85 (19)C21—N22—C23—O23179.39 (17)
O23—C31—C36—C35178.31 (19)C21—N22—C23—C241.1 (3)
N2—N3—C4—N41.2 (3)C23—O23—C31—C3267.2 (3)
N2—N3—C4—C21179.89 (17)C23—O23—C31—C36117.1 (2)
N3—N2—C1—S11.0 (3)C23—N22—C21—C4179.45 (18)
N3—N2—C1—N1179.79 (16)C23—N22—C21—C260.9 (3)
N3—C4—C21—N227.5 (3)C23—C24—C25—C261.2 (3)
N3—C4—C21—C26171.11 (19)C24—C25—C26—C211.4 (3)
N4—C4—C21—N22173.65 (19)C31—O23—C23—N2215.0 (3)
N4—C4—C21—C267.7 (3)C31—O23—C23—C24165.4 (2)
N22—C21—C26—C250.4 (3)C31—C32—C33—C340.1 (3)
N22—C23—C24—C250.0 (3)C32—C31—C36—C352.6 (3)
C1—N2—N3—C4174.43 (19)C32—C33—C34—C351.9 (4)
C4—C21—C26—C25178.14 (18)C33—C34—C35—C361.6 (3)
C11—N1—C1—S16.5 (3)C34—C35—C36—C310.6 (3)
C11—N1—C1—N2172.75 (19)C36—C31—C32—C332.3 (3)
C12—N1—C1—S1177.23 (15)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4A···O1W0.93 (3)1.92 (3)2.808 (2)160 (2)
O1W—H1WA···S1i0.87 (4)2.41 (4)3.2734 (19)173 (4)
O1W—H1WB···S1ii0.86 (4)2.45 (4)3.3018 (18)168 (3)
Symmetry codes: (i) x1/2, y+1, z; (ii) x, y+1, z.
In vitro tuberculostatic activity of compounds 46 and reference drugs (MIC in µg ml-1). top
CompoundH37RvSpec. 210
4164
584
6168
INH0.1258
Antimicrobial activity defined as minimal inhibitory concentration (MIC in mg l-1) of tested compounds and reference drugs. top
Microorganism456Reference drugs
Gram-positive bacteriaVan
Staphylococcus aureus ATCC 259230.490.491.950.98
Staphylococcus epidermidis ATCC 122280.490.240.980.98
Micrococcus luteus ATCC 102400.490.491.950.12
Bacillus subtilis ATCC 66330.980.240.980.24
Bacillus cereus ATCC 108767.80.983.90.98
Enterococcus faecalis ATCC 292127.83.97.81.95
Gram-negative bacteriaCip
Salmonella Typhimurium ATCC 14028>1000>1000>10000.061
Escherichia coli ATCC 25922>1000>100010000.015
Bordetella bronchiseptica ATCC 4617>1000>1000>10000.030
Klebsiella pneumoniae ATCC 13883>1000>100010000.122
Pseudomonas aeruginosa ATCC 9027>1000>10005000.488
YeastsNys
Candida glabrata ATCC 9003015.67.85000.24
Candida albicans ATCC 10223131.33.95000.48
Candida parapsilosis ATCC 2201931.37.831.30.24
Notes: Van is vancomycin, Cip is ciprofloxacin and Nys is nystatin.
 

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