data reports
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The title complex, [Cu(C8H18NO5)Cl] or [Cu(H4bis-tris)Cl], was obtained starting from the previously reported [Cu(H5bis-tris)Cl]Cl compound. The deprotonation of the aminopolyol ligand H5bis-tris {[bis(2-hydroxyethyl)amino]tris(hydroxymethyl)methane, C8H19NO5} promotes the formation of a very strong O—HO intermolecular hydrogen bond, characterized by an HO separation of 1.553 (19) Å and an O—HO angle of 178 (4)°. The remaining hydroxy groups are also engaged in hydrogen bonds, forming R22(8), R44(16), R44(20) and R44(22) ring motifs, which stabilize the triperiodic supramolecular network.
Keywords: crystal structure; coordination compound; bis-tris; supramolecular structure; very strong hydrogen bonds.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2414314624004395/wm4213sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2414314624004395/wm4213Isup2.hkl |
CCDC reference: 2355145
Key indicators
Structure: I- Single-crystal X-ray study
- T = 109 K
- Mean (C-C) = 0.004 Å
- R factor = 0.048
- wR factor = 0.130
- Data-to-parameter ratio = 16.4
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT410_ALERT_2_B Short Intra H...H Contact H4A ..H7A . 1.89 Ang. x,y,z = 1_555 Check
Alert level C PLAT112_ALERT_2_C ADDSYM Detects New (Pseudo) Symm. Elem B 87 %Fit PLAT213_ALERT_2_C Atom O2 has ADP max/min Ratio ..... 3.3 prolat PLAT975_ALERT_2_C Check Calcd Resid. Dens. 0.79Ang From O3 . 0.57 eA-3 PLAT975_ALERT_2_C Check Calcd Resid. Dens. 0.80Ang From O3 . 0.47 eA-3 PLAT975_ALERT_2_C Check Calcd Resid. Dens. 1.06Ang From O1 . 0.43 eA-3 PLAT975_ALERT_2_C Check Calcd Resid. Dens. 0.75Ang From O4 . 0.41 eA-3 PLAT976_ALERT_2_C Check Calcd Resid. Dens. 1.08Ang From O2 . -0.59 eA-3 PLAT977_ALERT_2_C Check Negative Difference Density on H2 . -0.34 eA-3
Alert level G PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 8 Note PLAT066_ALERT_1_G Predicted and Reported Tmin&Tmax Range Identical ? Check PLAT172_ALERT_4_G The CIF-Embedded .res File Contains DFIX Records 1 Report PLAT480_ALERT_4_G Long H...A H-Bond Reported H4B ..CL1 . 2.97 Ang. PLAT480_ALERT_4_G Long H...A H-Bond Reported H5A ..CL1 . 2.97 Ang. PLAT480_ALERT_4_G Long H...A H-Bond Reported H7B ..CL1 . 2.85 Ang. PLAT480_ALERT_4_G Long H...A H-Bond Reported H8B ..O1 . 2.65 Ang. PLAT484_ALERT_4_G Round D-H..A Angle Rep for C4 ..CL1 . 157 Degree PLAT484_ALERT_4_G Round D-H..A Angle Rep for C5 ..CL1 . 155 Degree PLAT484_ALERT_4_G Round D-H..A Angle Rep for C7 ..CL1 . 148 Degree PLAT484_ALERT_4_G Round D-H..A Angle Rep for C8 ..O1 . 157 Degree PLAT794_ALERT_5_G Tentative Bond Valency for Cu1 (II) . 2.18 Info PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 4 Note PLAT910_ALERT_3_G Missing # of FCF Reflection(s) Below Theta(Min). 4 Note -1 0 1, 1 0 1, 0 1 1, 0 0 2, PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 478 Note PLAT941_ALERT_3_G Average HKL Measurement Multiplicity ........... 2.1 Low PLAT952_ALERT_5_G Calculated (ThMax) and CIF-Reported Lmax Differ. 2 Units PLAT958_ALERT_1_G Calculated (ThMax) and Actual (FCF) Lmax Differ. 2 Units PLAT969_ALERT_5_G The 'Henn et al.' R-Factor-gap value ........... 1.95 Note Predicted wR2: Based on SigI 2 6.65 or SHELX Weight 12.82 PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 0 Info
0 ALERT level A = Most likely a serious problem - resolve or explain 1 ALERT level B = A potentially serious problem, consider carefully 8 ALERT level C = Check. Ensure it is not caused by an omission or oversight 20 ALERT level G = General information/check it is not something unexpected 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 11 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 10 ALERT type 4 Improvement, methodology, query or suggestion 3 ALERT type 5 Informative message, check
Computing details top
Chlorido(2-{(2-hydroxyethyl)[tris(hydroxymethyl)methyl]amino}ethanolato-κ5N,O,O',O'',O''')copper(II) top
Crystal data top
[Cu(C8H18NO5)Cl] | Dx = 1.844 Mg m−3 |
Mr = 307.22 | Melting point: 435 K |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 7.2605 (9) Å | Cell parameters from 1395 reflections |
b = 10.4221 (14) Å | θ = 3.4–29.6° |
c = 14.668 (2) Å | µ = 2.22 mm−1 |
β = 94.366 (12)° | T = 109 K |
V = 1106.7 (3) Å3 | Prism, blue |
Z = 4 | 0.17 × 0.06 × 0.04 mm |
F(000) = 636 |
Data collection top
Xcalibur, Atlas, Gemini diffractometer | 2582 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 2002 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
Detector resolution: 10.4685 pixels mm-1 | θmax = 29.6°, θmin = 3.4° |
ω scans | h = −9→10 |
Absorption correction: analytical (CrysAlisPro; Rigaku OD, 2022) | k = −14→13 |
Tmin = 0.848, Tmax = 0.917 | l = −18→18 |
5523 measured reflections |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: mixed |
wR(F2) = 0.130 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0646P)2] where P = (Fo2 + 2Fc2)/3 |
2582 reflections | (Δ/σ)max = 0.001 |
157 parameters | Δρmax = 1.18 e Å−3 |
4 restraints | Δρmin = −1.17 e Å−3 |
0 constraints |
Special details top
Refinement. Methylene H atoms were refined using a riding model (C—H: 0.99 Å); hydroxy H atoms (H1, H2, H3, H4) were located from electron-difference maps and were refined freely, with the O—H bond lengths restrained to 0.85 (2) Å. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.22842 (5) | 0.75373 (4) | 0.75931 (3) | 0.00775 (16) | |
Cl1 | 0.31899 (12) | 0.76196 (8) | 0.61387 (6) | 0.0145 (2) | |
O1 | 0.2269 (3) | 0.8024 (2) | 1.09572 (16) | 0.0130 (5) | |
H1 | 0.116 (3) | 0.790 (4) | 1.103 (3) | 0.019* | |
O2 | 0.3908 (3) | 0.6168 (2) | 0.80600 (16) | 0.0096 (5) | |
H2 | 0.407 (5) | 0.539 (2) | 0.790 (3) | 0.014* | |
O3 | 0.4592 (3) | 0.8730 (2) | 0.84389 (17) | 0.0143 (5) | |
H3 | 0.462 (5) | 0.9507 (19) | 0.836 (3) | 0.022* | |
O4 | −0.0338 (3) | 0.6104 (2) | 0.72784 (16) | 0.0104 (5) | |
H4 | −0.113 (4) | 0.641 (4) | 0.692 (2) | 0.016* | |
O5 | 0.0620 (3) | 0.8995 (2) | 0.74310 (16) | 0.0111 (5) | |
N1 | 0.1319 (4) | 0.7390 (2) | 0.8869 (2) | 0.0075 (6) | |
C1 | 0.3128 (5) | 0.7294 (3) | 0.9443 (2) | 0.0080 (7) | |
C2 | 0.2964 (5) | 0.6976 (3) | 1.0446 (2) | 0.0121 (7) | |
H2A | 0.213089 | 0.622927 | 1.048817 | 0.015* | |
H2B | 0.419525 | 0.672641 | 1.072706 | 0.015* | |
C3 | 0.4235 (4) | 0.6194 (3) | 0.9021 (2) | 0.0109 (7) | |
H3A | 0.557130 | 0.631837 | 0.918562 | 0.013* | |
H3B | 0.386836 | 0.536144 | 0.927768 | 0.013* | |
C4 | 0.4244 (4) | 0.8542 (3) | 0.9372 (2) | 0.0104 (7) | |
H4A | 0.353726 | 0.927666 | 0.959330 | 0.012* | |
H4B | 0.542532 | 0.847779 | 0.975361 | 0.012* | |
C5 | 0.0232 (4) | 0.6181 (3) | 0.8917 (2) | 0.0096 (7) | |
H5A | −0.039617 | 0.617991 | 0.949336 | 0.012* | |
H5B | 0.109414 | 0.544400 | 0.893907 | 0.012* | |
C6 | −0.1206 (4) | 0.5993 (3) | 0.8123 (2) | 0.0118 (7) | |
H6A | −0.178021 | 0.513531 | 0.816363 | 0.014* | |
H6B | −0.218735 | 0.664857 | 0.814672 | 0.014* | |
C7 | 0.0172 (4) | 0.8544 (3) | 0.9019 (2) | 0.0094 (7) | |
H7A | 0.095096 | 0.922177 | 0.932473 | 0.011* | |
H7B | −0.081487 | 0.832157 | 0.942142 | 0.011* | |
C8 | −0.0692 (4) | 0.9044 (3) | 0.8101 (2) | 0.0114 (7) | |
H8A | −0.177933 | 0.851406 | 0.789966 | 0.014* | |
H8B | −0.111298 | 0.993927 | 0.817219 | 0.014* |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0099 (3) | 0.0069 (2) | 0.0065 (2) | 0.00093 (15) | 0.00096 (17) | 0.00036 (15) |
Cl1 | 0.0135 (4) | 0.0219 (5) | 0.0084 (4) | 0.0024 (3) | 0.0025 (3) | 0.0011 (3) |
O1 | 0.0108 (11) | 0.0173 (13) | 0.0108 (13) | −0.0005 (11) | 0.0007 (9) | −0.0040 (11) |
O2 | 0.0163 (11) | 0.0046 (11) | 0.0080 (12) | 0.0047 (10) | 0.0018 (9) | −0.0025 (10) |
O3 | 0.0218 (12) | 0.0108 (11) | 0.0110 (13) | −0.0061 (11) | 0.0049 (10) | 0.0006 (11) |
O4 | 0.0128 (11) | 0.0111 (12) | 0.0073 (12) | −0.0009 (10) | −0.0007 (9) | 0.0000 (10) |
O5 | 0.0154 (11) | 0.0085 (11) | 0.0100 (12) | 0.0031 (10) | 0.0037 (9) | 0.0011 (10) |
N1 | 0.0095 (13) | 0.0039 (13) | 0.0088 (14) | 0.0006 (10) | −0.0011 (11) | −0.0011 (11) |
C1 | 0.0085 (15) | 0.0082 (15) | 0.0070 (16) | −0.0009 (13) | −0.0022 (12) | −0.0015 (13) |
C2 | 0.0128 (16) | 0.0119 (16) | 0.0114 (18) | 0.0007 (14) | −0.0012 (13) | −0.0009 (15) |
C3 | 0.0114 (15) | 0.0090 (16) | 0.0121 (18) | 0.0007 (14) | −0.0011 (12) | 0.0020 (14) |
C4 | 0.0120 (15) | 0.0078 (16) | 0.0112 (18) | −0.0019 (14) | 0.0001 (12) | −0.0028 (13) |
C5 | 0.0119 (15) | 0.0090 (15) | 0.0075 (16) | −0.0004 (14) | −0.0013 (12) | 0.0018 (14) |
C6 | 0.0137 (15) | 0.0113 (16) | 0.0101 (17) | −0.0055 (14) | −0.0015 (12) | 0.0021 (14) |
C7 | 0.0102 (15) | 0.0105 (16) | 0.0076 (17) | 0.0038 (13) | 0.0010 (12) | 0.0011 (13) |
C8 | 0.0124 (15) | 0.0115 (16) | 0.0102 (17) | 0.0004 (14) | 0.0012 (12) | 0.0014 (14) |
Geometric parameters (Å, º) top
Cu1—O2 | 1.943 (2) | C1—C4 | 1.540 (4) |
Cu1—O5 | 1.944 (2) | C1—C3 | 1.556 (5) |
Cu1—N1 | 2.054 (3) | C2—H2A | 0.9900 |
Cu1—Cl1 | 2.2812 (10) | C2—H2B | 0.9900 |
Cu1—O3 | 2.361 (3) | C3—H3A | 0.9900 |
Cu1—O4 | 2.436 (2) | C3—H3B | 0.9900 |
O1—C2 | 1.438 (4) | C4—H4A | 0.9900 |
O1—H1 | 0.833 (19) | C4—H4B | 0.9900 |
O2—C3 | 1.412 (4) | C5—C6 | 1.516 (4) |
O2—H2 | 0.856 (19) | C5—H5A | 0.9900 |
O3—C4 | 1.425 (4) | C5—H5B | 0.9900 |
O3—H3 | 0.818 (19) | C6—H6A | 0.9900 |
O4—C6 | 1.437 (4) | C6—H6B | 0.9900 |
O4—H4 | 0.819 (18) | C7—C8 | 1.534 (5) |
O5—C8 | 1.420 (4) | C7—H7A | 0.9900 |
N1—C7 | 1.489 (4) | C7—H7B | 0.9900 |
N1—C5 | 1.491 (4) | C8—H8A | 0.9900 |
N1—C1 | 1.509 (4) | C8—H8B | 0.9900 |
C1—C2 | 1.522 (5) | ||
O2—Cu1—O5 | 166.42 (10) | C1—C2—H2A | 108.9 |
O2—Cu1—N1 | 82.17 (10) | O1—C2—H2B | 108.9 |
O5—Cu1—N1 | 85.29 (10) | C1—C2—H2B | 108.9 |
O2—Cu1—Cl1 | 98.45 (7) | H2A—C2—H2B | 107.7 |
O5—Cu1—Cl1 | 94.41 (7) | O2—C3—C1 | 111.0 (3) |
N1—Cu1—Cl1 | 176.13 (8) | O2—C3—H3A | 109.4 |
O2—Cu1—O3 | 79.29 (9) | C1—C3—H3A | 109.4 |
O5—Cu1—O3 | 93.57 (9) | O2—C3—H3B | 109.4 |
N1—Cu1—O3 | 80.70 (10) | C1—C3—H3B | 109.4 |
Cl1—Cu1—O3 | 103.18 (7) | H3A—C3—H3B | 108.0 |
O2—Cu1—O4 | 93.48 (9) | O3—C4—C1 | 108.3 (3) |
O5—Cu1—O4 | 89.25 (9) | O3—C4—H4A | 110.0 |
N1—Cu1—O4 | 79.10 (10) | C1—C4—H4A | 110.0 |
Cl1—Cu1—O4 | 97.04 (6) | O3—C4—H4B | 110.0 |
O3—Cu1—O4 | 159.29 (9) | C1—C4—H4B | 110.0 |
C2—O1—H1 | 110 (3) | H4A—C4—H4B | 108.4 |
C3—O2—Cu1 | 112.91 (19) | N1—C5—C6 | 114.1 (3) |
C3—O2—H2 | 106 (3) | N1—C5—H5A | 108.7 |
Cu1—O2—H2 | 134 (3) | C6—C5—H5A | 108.7 |
C4—O3—Cu1 | 105.16 (18) | N1—C5—H5B | 108.7 |
C4—O3—H3 | 106 (3) | C6—C5—H5B | 108.7 |
Cu1—O3—H3 | 118 (3) | H5A—C5—H5B | 107.6 |
C6—O4—Cu1 | 105.88 (18) | O4—C6—C5 | 109.3 (3) |
C6—O4—H4 | 105 (3) | O4—C6—H6A | 109.8 |
Cu1—O4—H4 | 113 (3) | C5—C6—H6A | 109.8 |
C8—O5—Cu1 | 112.74 (19) | O4—C6—H6B | 109.8 |
C7—N1—C5 | 111.8 (3) | C5—C6—H6B | 109.8 |
C7—N1—C1 | 116.3 (3) | H6A—C6—H6B | 108.3 |
C5—N1—C1 | 111.1 (2) | N1—C7—C8 | 109.9 (3) |
C7—N1—Cu1 | 107.9 (2) | N1—C7—H7A | 109.7 |
C5—N1—Cu1 | 109.0 (2) | C8—C7—H7A | 109.7 |
C1—N1—Cu1 | 99.8 (2) | N1—C7—H7B | 109.7 |
N1—C1—C2 | 115.2 (3) | C8—C7—H7B | 109.7 |
N1—C1—C4 | 110.3 (3) | H7A—C7—H7B | 108.2 |
C2—C1—C4 | 109.3 (3) | O5—C8—C7 | 110.1 (3) |
N1—C1—C3 | 106.3 (3) | O5—C8—H8A | 109.6 |
C2—C1—C3 | 107.7 (3) | C7—C8—H8A | 109.6 |
C4—C1—C3 | 107.8 (3) | O5—C8—H8B | 109.6 |
O1—C2—C1 | 113.2 (3) | C7—C8—H8B | 109.6 |
O1—C2—H2A | 108.9 | H8A—C8—H8B | 108.1 |
C7—N1—C1—C2 | 72.7 (4) | C4—C1—C3—O2 | −82.8 (3) |
C5—N1—C1—C2 | −56.7 (4) | Cu1—O3—C4—C1 | 22.4 (3) |
Cu1—N1—C1—C2 | −171.5 (2) | N1—C1—C4—O3 | −60.1 (3) |
C7—N1—C1—C4 | −51.5 (4) | C2—C1—C4—O3 | 172.3 (3) |
C5—N1—C1—C4 | 179.1 (3) | C3—C1—C4—O3 | 55.5 (3) |
Cu1—N1—C1—C4 | 64.2 (3) | C7—N1—C5—C6 | 69.7 (4) |
C7—N1—C1—C3 | −168.1 (3) | C1—N1—C5—C6 | −158.5 (3) |
C5—N1—C1—C3 | 62.5 (3) | Cu1—N1—C5—C6 | −49.5 (3) |
Cu1—N1—C1—C3 | −52.3 (3) | Cu1—O4—C6—C5 | −28.5 (3) |
N1—C1—C2—O1 | −72.4 (3) | N1—C5—C6—O4 | 53.5 (4) |
C4—C1—C2—O1 | 52.4 (4) | C5—N1—C7—C8 | −91.3 (3) |
C3—C1—C2—O1 | 169.2 (2) | C1—N1—C7—C8 | 139.7 (3) |
Cu1—O2—C3—C1 | 2.2 (3) | Cu1—N1—C7—C8 | 28.6 (3) |
N1—C1—C3—O2 | 35.5 (3) | Cu1—O5—C8—C7 | 34.4 (3) |
C2—C1—C3—O2 | 159.4 (3) | N1—C7—C8—O5 | −41.6 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···Cl1i | 0.83 (2) | 2.24 (2) | 3.068 (2) | 174 (4) |
O2—H2···O5ii | 0.86 (2) | 1.55 (2) | 2.408 (3) | 178 (4) |
O3—H3···O4iii | 0.82 (2) | 2.00 (2) | 2.758 (3) | 154 (4) |
O4—H4···O1iv | 0.82 (2) | 1.85 (2) | 2.663 (3) | 171 (4) |
C4—H4B···Cl1v | 0.99 | 2.97 | 3.906 (3) | 157 |
C5—H5A···Cl1i | 0.99 | 2.97 | 3.887 (4) | 155 |
C7—H7B···Cl1i | 0.99 | 2.85 | 3.727 (3) | 148 |
C8—H8B···O1vi | 0.99 | 2.65 | 3.577 (4) | 157 |
Symmetry codes: (i) x−1/2, −y+3/2, z+1/2; (ii) −x+1/2, y−1/2, −z+3/2; (iii) −x+1/2, y+1/2, −z+3/2; (iv) x−1/2, −y+3/2, z−1/2; (v) x+1/2, −y+3/2, z+1/2; (vi) −x, −y+2, −z+2. |