Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807064628/ww2110sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807064628/ww2110Isup2.hkl |
CCDC reference: 674497
Key indicators
- Single-crystal X-ray study
- T = 294 K
- Mean (C-C)= 0.003 Å
- R factor = 0.047
- wR factor = 0.150
- Data-to-parameter ratio = 14.1
checkCIF/PLATON results
No syntax errors found No errors found in this datablock
2-Benzoylpyridine semicarbazone (H2Bz4PS) was prepared by adding portion-wise an aqueous solution containing equimolar amounts (2 mmol) of semicarbazide hydrochloride and sodium acetate to 2-Benzoylpyridine (2 mmol) in ethanol at room temperature. The reaction mixture was kept under stirring for 20 h. The resulting solid was filtered off and washed with distilled water and ether and then dried. H2Bz4PS: Yield: 69.4%. Melting point: 181.5–182.7 °C. Anal. Calc: C, 64.99; H, 5.03; N, 23.32%. Found: C, 64.02; H, 4.95; N, 23.05%.
The model was refined by full-matrix least squares on F2 with SHELXL97 (Sheldrick, 1997). All the hydrogen atoms were stereochemically positioned and refined with the riding model. Hydrogen atoms of the CH, NH and NH2 groups were set isotropic with a thermal parameter 20% greater than the equivalent isotropic displacement parameter of the atom to which each one was bonded.
Semicarbazones present a wide range of biological applications as antitumoral, anticonvulsant, anti-trypanosomal, herbicidal and biocidal agents (Beraldo & Gambino, 2004; Beraldo et al., 2002; Teixeira et al., 2003). In some cases complexation to metal ions can improve properties of these ligands, such as lipophilicity and pharmacological activity. Moreover, mechanisms of action of bioactive compounds can involve coordination to metal-containing enzymes (Farrell, 2002). As part of our research aiming to understand the molecular and biological properties of semicarbazones we previously prepared 2-Benzoylpyridine semicarbazone (H2Bz4PS) and its Cu(II) and Zn(II) complexes (Pérez-Rebolledo et al., 2006). Here we describe the synthesis and crystal structure of H2Bz4PS (Fig. 1).
The molecular conformation can be described using three planar groups, the phenyl ring, the pyridyl ring and the semicarbazone group. The dihedral angles between the least-square planes through the semicarbazone group and the pyridyl ring are 22.70° and 27.26°, for molecule I and II respectively. The angle between the least-square planes through the semicarbazone group and phenyl ring are almost the same, 32.96° and 32.49°, for molecule I and II respectively. The dihedral angles between the phenyl and the pyridyl rings are 53.12° and 53.99° for molecule I and II respectively. The molecular conformation is fixed by an intramolecular interactions of the N—H···N type, N12—H12···N14 for molecule I and N22—H22···N24 for molecule II. The crystal packing is stabilized by N—H···O intermolecular interactions that form centrosymmetric dimers (Fig. 2). Another N—H···O hydrogen bond gives rise to the formation of infinite chains along the b axis.
For related literature, see: Beraldo & Gambino (2004); Beraldo et al. (2002); Teixeira et al. (2003); Farrell (2002); Pérez-Rebolledo et al. (2006).
Data collection: COLLECT (Enraf–Nonius, 2000); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
C13H12N4O | F(000) = 2016 |
Mr = 240.27 | Dx = 1.309 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 23344 reflections |
a = 22.9281 (7) Å | θ = 2.9–25.7° |
b = 9.1868 (2) Å | µ = 0.09 mm−1 |
c = 23.1869 (7) Å | T = 294 K |
β = 93.049 (1)° | Prism, colourless |
V = 4877.1 (2) Å3 | 0.18 × 0.14 × 0.04 mm |
Z = 16 |
KappaCCD diffractometer | Rint = 0.066 |
φ scans and ω scans with κ offsets | θmax = 25.7°, θmin = 3.5° |
16551 measured reflections | h = −27→27 |
4588 independent reflections | k = −10→11 |
3011 reflections with I > 2σ(I) | l = −28→28 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.047 | w = 1/[σ2(Fo2) + (0.0842P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.150 | (Δ/σ)max < 0.001 |
S = 1.07 | Δρmax = 0.27 e Å−3 |
4588 reflections | Δρmin = −0.22 e Å−3 |
325 parameters |
C13H12N4O | V = 4877.1 (2) Å3 |
Mr = 240.27 | Z = 16 |
Monoclinic, C2/c | Mo Kα radiation |
a = 22.9281 (7) Å | µ = 0.09 mm−1 |
b = 9.1868 (2) Å | T = 294 K |
c = 23.1869 (7) Å | 0.18 × 0.14 × 0.04 mm |
β = 93.049 (1)° |
KappaCCD diffractometer | 3011 reflections with I > 2σ(I) |
16551 measured reflections | Rint = 0.066 |
4588 independent reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.150 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.27 e Å−3 |
4588 reflections | Δρmin = −0.22 e Å−3 |
325 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.32552 (5) | 0.15282 (12) | 0.00628 (6) | 0.0579 (4) | |
N11 | 0.30310 (7) | 0.38523 (15) | 0.02708 (7) | 0.0638 (5) | |
H11A | 0.2668 | 0.3735 | 0.0168 | 0.077* | |
H11B | 0.3154 | 0.4685 | 0.0396 | 0.077* | |
N12 | 0.39721 (7) | 0.30226 (14) | 0.03898 (7) | 0.0560 (4) | |
H12 | 0.4234 | 0.2373 | 0.0338 | 0.067* | |
N13 | 0.41230 (6) | 0.43452 (15) | 0.06270 (6) | 0.0518 (4) | |
N14 | 0.50663 (7) | 0.22107 (17) | 0.07080 (8) | 0.0646 (5) | |
C11 | 0.33995 (8) | 0.27542 (18) | 0.02374 (8) | 0.0472 (4) | |
C12 | 0.46602 (8) | 0.46234 (18) | 0.07889 (7) | 0.0503 (4) | |
C13 | 0.47417 (8) | 0.60980 (18) | 0.10515 (8) | 0.0507 (5) | |
C14 | 0.43912 (9) | 0.7256 (2) | 0.08574 (9) | 0.0615 (5) | |
H14 | 0.4120 | 0.7117 | 0.0550 | 0.074* | |
C15 | 0.44422 (10) | 0.8602 (2) | 0.11153 (11) | 0.0717 (6) | |
H15 | 0.4210 | 0.9369 | 0.0977 | 0.086* | |
C16 | 0.48359 (10) | 0.8818 (2) | 0.15773 (11) | 0.0752 (6) | |
H16 | 0.4864 | 0.9723 | 0.1756 | 0.090* | |
C17 | 0.51862 (10) | 0.7691 (2) | 0.17715 (10) | 0.0728 (6) | |
H17 | 0.5458 | 0.7840 | 0.2078 | 0.087* | |
C18 | 0.51390 (9) | 0.6347 (2) | 0.15160 (9) | 0.0612 (5) | |
H18 | 0.5376 | 0.5590 | 0.1655 | 0.073* | |
C19 | 0.51699 (8) | 0.36475 (18) | 0.07344 (8) | 0.0526 (5) | |
C110 | 0.57304 (9) | 0.4197 (2) | 0.07022 (8) | 0.0625 (5) | |
H110 | 0.5795 | 0.5196 | 0.0709 | 0.075* | |
C111 | 0.61896 (9) | 0.3247 (3) | 0.06597 (10) | 0.0745 (6) | |
H111 | 0.6568 | 0.3601 | 0.0642 | 0.089* | |
C112 | 0.60892 (10) | 0.1782 (3) | 0.06428 (10) | 0.0746 (6) | |
H112 | 0.6395 | 0.1124 | 0.0620 | 0.090* | |
C113 | 0.55268 (10) | 0.1312 (2) | 0.06610 (10) | 0.0732 (6) | |
H113 | 0.5456 | 0.0316 | 0.0640 | 0.088* | |
O2 | 0.24288 (6) | 0.15322 (12) | 0.42544 (5) | 0.0583 (4) | |
N21 | 0.21621 (7) | 0.38036 (15) | 0.44999 (7) | 0.0600 (4) | |
H21A | 0.2252 | 0.3660 | 0.4860 | 0.072* | |
H21B | 0.2025 | 0.4632 | 0.4386 | 0.072* | |
N22 | 0.20957 (7) | 0.30602 (15) | 0.35554 (6) | 0.0568 (4) | |
H22 | 0.2161 | 0.2435 | 0.3291 | 0.068* | |
N23 | 0.18510 (7) | 0.43784 (15) | 0.34154 (6) | 0.0529 (4) | |
N24 | 0.17683 (8) | 0.22916 (17) | 0.24561 (7) | 0.0621 (4) | |
C21 | 0.22340 (8) | 0.27519 (17) | 0.41217 (7) | 0.0468 (4) | |
C22 | 0.17017 (8) | 0.46887 (18) | 0.28832 (7) | 0.0507 (4) | |
C23 | 0.14314 (8) | 0.61504 (18) | 0.28004 (8) | 0.0517 (5) | |
C24 | 0.16044 (9) | 0.7306 (2) | 0.31577 (9) | 0.0618 (5) | |
H24 | 0.1901 | 0.7173 | 0.3442 | 0.074* | |
C25 | 0.13392 (11) | 0.8647 (2) | 0.30944 (9) | 0.0726 (6) | |
H25 | 0.1458 | 0.9412 | 0.3336 | 0.087* | |
C26 | 0.09007 (11) | 0.8860 (2) | 0.26773 (10) | 0.0758 (7) | |
H26 | 0.0722 | 0.9765 | 0.2637 | 0.091* | |
C27 | 0.07268 (10) | 0.7732 (2) | 0.23192 (10) | 0.0720 (6) | |
H27 | 0.0430 | 0.7876 | 0.2035 | 0.086* | |
C28 | 0.09885 (9) | 0.6396 (2) | 0.23788 (9) | 0.0620 (5) | |
H28 | 0.0868 | 0.5641 | 0.2133 | 0.074* | |
C29 | 0.17786 (8) | 0.37337 (19) | 0.23733 (8) | 0.0532 (5) | |
C210 | 0.18628 (9) | 0.4333 (2) | 0.18346 (8) | 0.0666 (6) | |
H210 | 0.1890 | 0.5336 | 0.1790 | 0.080* | |
C211 | 0.19057 (11) | 0.3423 (3) | 0.13692 (10) | 0.0781 (6) | |
H211 | 0.1953 | 0.3808 | 0.1004 | 0.094* | |
C212 | 0.18792 (10) | 0.1954 (3) | 0.14452 (10) | 0.0742 (6) | |
H212 | 0.1901 | 0.1324 | 0.1133 | 0.089* | |
C213 | 0.18198 (10) | 0.1423 (2) | 0.19957 (10) | 0.0717 (6) | |
H213 | 0.1815 | 0.0420 | 0.2050 | 0.086* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0576 (8) | 0.0475 (7) | 0.0680 (9) | −0.0063 (6) | −0.0032 (6) | −0.0060 (6) |
N11 | 0.0486 (10) | 0.0495 (9) | 0.0915 (13) | 0.0005 (7) | −0.0132 (9) | −0.0110 (8) |
N12 | 0.0465 (10) | 0.0483 (9) | 0.0721 (11) | 0.0010 (6) | −0.0058 (8) | −0.0077 (7) |
N13 | 0.0498 (10) | 0.0488 (8) | 0.0559 (10) | −0.0047 (6) | −0.0052 (7) | 0.0005 (6) |
N14 | 0.0537 (11) | 0.0583 (10) | 0.0818 (13) | 0.0034 (8) | 0.0039 (9) | 0.0122 (8) |
C11 | 0.0461 (11) | 0.0498 (10) | 0.0451 (10) | −0.0030 (8) | −0.0023 (8) | −0.0002 (8) |
C12 | 0.0466 (11) | 0.0546 (11) | 0.0489 (11) | −0.0046 (8) | −0.0059 (8) | 0.0086 (8) |
C13 | 0.0464 (11) | 0.0526 (10) | 0.0524 (11) | −0.0071 (8) | −0.0034 (8) | 0.0037 (8) |
C14 | 0.0532 (12) | 0.0604 (12) | 0.0695 (14) | −0.0044 (9) | −0.0093 (10) | −0.0010 (9) |
C15 | 0.0604 (14) | 0.0597 (12) | 0.0945 (18) | 0.0003 (9) | 0.0013 (12) | −0.0048 (11) |
C16 | 0.0682 (16) | 0.0723 (14) | 0.0859 (17) | −0.0156 (11) | 0.0104 (12) | −0.0246 (12) |
C17 | 0.0649 (15) | 0.0865 (15) | 0.0660 (14) | −0.0142 (12) | −0.0055 (11) | −0.0133 (11) |
C18 | 0.0572 (13) | 0.0693 (13) | 0.0558 (12) | −0.0072 (9) | −0.0076 (10) | −0.0003 (9) |
C19 | 0.0492 (12) | 0.0595 (11) | 0.0486 (11) | −0.0013 (8) | −0.0026 (8) | 0.0096 (8) |
C110 | 0.0531 (13) | 0.0725 (12) | 0.0616 (13) | −0.0041 (10) | 0.0008 (9) | 0.0043 (10) |
C111 | 0.0470 (13) | 0.0974 (17) | 0.0794 (16) | 0.0036 (11) | 0.0073 (11) | 0.0075 (12) |
C112 | 0.0556 (14) | 0.0909 (17) | 0.0780 (16) | 0.0163 (11) | 0.0093 (11) | 0.0196 (12) |
C113 | 0.0645 (15) | 0.0662 (13) | 0.0893 (17) | 0.0127 (10) | 0.0092 (12) | 0.0157 (11) |
O2 | 0.0712 (10) | 0.0462 (7) | 0.0562 (8) | 0.0068 (6) | −0.0069 (7) | 0.0044 (6) |
N21 | 0.0811 (12) | 0.0497 (9) | 0.0476 (9) | 0.0128 (7) | −0.0106 (8) | 0.0001 (7) |
N22 | 0.0737 (11) | 0.0499 (9) | 0.0458 (9) | 0.0109 (7) | −0.0049 (8) | 0.0016 (6) |
N23 | 0.0589 (10) | 0.0485 (9) | 0.0504 (9) | 0.0032 (7) | −0.0049 (7) | 0.0065 (7) |
N24 | 0.0722 (12) | 0.0599 (10) | 0.0539 (10) | −0.0070 (8) | 0.0013 (8) | −0.0043 (7) |
C21 | 0.0481 (11) | 0.0459 (10) | 0.0456 (11) | −0.0006 (8) | −0.0034 (8) | 0.0045 (8) |
C22 | 0.0531 (11) | 0.0530 (10) | 0.0454 (11) | −0.0011 (8) | −0.0022 (8) | 0.0062 (8) |
C23 | 0.0523 (12) | 0.0555 (11) | 0.0469 (11) | 0.0013 (8) | −0.0012 (9) | 0.0085 (8) |
C24 | 0.0688 (14) | 0.0627 (12) | 0.0528 (12) | 0.0030 (10) | −0.0063 (10) | 0.0011 (9) |
C25 | 0.0964 (18) | 0.0580 (13) | 0.0632 (14) | 0.0093 (11) | 0.0034 (12) | −0.0002 (9) |
C26 | 0.0908 (18) | 0.0693 (14) | 0.0678 (15) | 0.0263 (12) | 0.0102 (12) | 0.0162 (11) |
C27 | 0.0681 (15) | 0.0846 (15) | 0.0623 (14) | 0.0175 (11) | −0.0046 (11) | 0.0153 (11) |
C28 | 0.0623 (13) | 0.0638 (12) | 0.0587 (13) | 0.0021 (9) | −0.0074 (10) | 0.0078 (9) |
C29 | 0.0502 (12) | 0.0589 (12) | 0.0500 (11) | −0.0016 (8) | −0.0030 (8) | 0.0028 (8) |
C210 | 0.0732 (15) | 0.0745 (13) | 0.0524 (13) | 0.0056 (10) | 0.0058 (10) | 0.0077 (10) |
C211 | 0.0852 (18) | 0.0993 (18) | 0.0504 (13) | 0.0141 (13) | 0.0088 (11) | 0.0019 (11) |
C212 | 0.0694 (15) | 0.0977 (18) | 0.0557 (14) | 0.0032 (12) | 0.0037 (11) | −0.0171 (11) |
C213 | 0.0772 (16) | 0.0686 (13) | 0.0690 (15) | −0.0080 (10) | 0.0019 (12) | −0.0112 (11) |
O1—C11 | 1.2360 (19) | O2—C21 | 1.2390 (19) |
N11—C11 | 1.321 (2) | N21—C21 | 1.321 (2) |
N11—H11A | 0.8600 | N21—H21A | 0.8600 |
N11—H11B | 0.8600 | N21—H21B | 0.8600 |
N12—C11 | 1.364 (2) | N22—C21 | 1.364 (2) |
N12—N13 | 1.3705 (19) | N22—N23 | 1.3665 (18) |
N12—H12 | 0.8600 | N22—H22 | 0.8600 |
N13—C12 | 1.294 (2) | N23—C22 | 1.295 (2) |
N14—C19 | 1.342 (2) | N24—C29 | 1.339 (2) |
N14—C113 | 1.349 (3) | N24—C213 | 1.343 (3) |
C12—C19 | 1.484 (2) | C22—C23 | 1.487 (2) |
C12—C13 | 1.493 (2) | C22—C29 | 1.490 (2) |
C13—C18 | 1.392 (2) | C23—C28 | 1.390 (2) |
C13—C14 | 1.393 (3) | C23—C24 | 1.392 (3) |
C14—C15 | 1.376 (3) | C24—C25 | 1.378 (3) |
C14—H14 | 0.9300 | C24—H24 | 0.9300 |
C15—C16 | 1.378 (3) | C25—C26 | 1.371 (3) |
C15—H15 | 0.9300 | C25—H25 | 0.9300 |
C16—C17 | 1.371 (3) | C26—C27 | 1.374 (3) |
C16—H16 | 0.9300 | C26—H26 | 0.9300 |
C17—C18 | 1.371 (3) | C27—C28 | 1.370 (3) |
C17—H17 | 0.9300 | C27—H27 | 0.9300 |
C18—H18 | 0.9300 | C28—H28 | 0.9300 |
C19—C110 | 1.386 (3) | C29—C210 | 1.388 (3) |
C110—C111 | 1.375 (3) | C210—C211 | 1.372 (3) |
C110—H110 | 0.9300 | C210—H210 | 0.9300 |
C111—C112 | 1.366 (3) | C211—C212 | 1.363 (3) |
C111—H111 | 0.9300 | C211—H211 | 0.9300 |
C112—C113 | 1.362 (3) | C212—C213 | 1.380 (3) |
C112—H112 | 0.9300 | C212—H212 | 0.9300 |
C113—H113 | 0.9300 | C213—H213 | 0.9300 |
C11—N11—H11A | 120.0 | C21—N21—H21A | 120.0 |
C11—N11—H11B | 120.0 | C21—N21—H21B | 120.0 |
H11A—N11—H11B | 120.0 | H21A—N21—H21B | 120.0 |
C11—N12—N13 | 118.90 (14) | C21—N22—N23 | 118.96 (14) |
C11—N12—H12 | 120.6 | C21—N22—H22 | 120.5 |
N13—N12—H12 | 120.6 | N23—N22—H22 | 120.5 |
C12—N13—N12 | 120.51 (15) | C22—N23—N22 | 120.40 (14) |
C19—N14—C113 | 117.91 (17) | C29—N24—C213 | 118.09 (17) |
O1—C11—N11 | 123.66 (17) | O2—C21—N21 | 123.56 (16) |
O1—C11—N12 | 119.14 (15) | O2—C21—N22 | 119.28 (15) |
N11—C11—N12 | 117.18 (15) | N21—C21—N22 | 117.14 (14) |
N13—C12—C19 | 126.72 (16) | N23—C22—C23 | 114.15 (15) |
N13—C12—C13 | 113.21 (15) | N23—C22—C29 | 126.16 (15) |
C19—C12—C13 | 120.07 (15) | C23—C22—C29 | 119.68 (15) |
C18—C13—C14 | 117.82 (16) | C28—C23—C24 | 117.99 (16) |
C18—C13—C12 | 121.83 (16) | C28—C23—C22 | 121.42 (16) |
C14—C13—C12 | 120.23 (16) | C24—C23—C22 | 120.56 (16) |
C15—C14—C13 | 120.76 (19) | C25—C24—C23 | 120.56 (19) |
C15—C14—H14 | 119.6 | C25—C24—H24 | 119.7 |
C13—C14—H14 | 119.6 | C23—C24—H24 | 119.7 |
C14—C15—C16 | 120.3 (2) | C26—C25—C24 | 120.4 (2) |
C14—C15—H15 | 119.8 | C26—C25—H25 | 119.8 |
C16—C15—H15 | 119.8 | C24—C25—H25 | 119.8 |
C17—C16—C15 | 119.63 (19) | C25—C26—C27 | 119.81 (19) |
C17—C16—H16 | 120.2 | C25—C26—H26 | 120.1 |
C15—C16—H16 | 120.2 | C27—C26—H26 | 120.1 |
C16—C17—C18 | 120.4 (2) | C28—C27—C26 | 120.2 (2) |
C16—C17—H17 | 119.8 | C28—C27—H27 | 119.9 |
C18—C17—H17 | 119.8 | C26—C27—H27 | 119.9 |
C17—C18—C13 | 121.05 (19) | C27—C28—C23 | 121.07 (19) |
C17—C18—H18 | 119.5 | C27—C28—H28 | 119.5 |
C13—C18—H18 | 119.5 | C23—C28—H28 | 119.5 |
N14—C19—C110 | 121.19 (17) | N24—C29—C210 | 121.71 (17) |
N14—C19—C12 | 117.39 (16) | N24—C29—C22 | 117.71 (16) |
C110—C19—C12 | 121.42 (16) | C210—C29—C22 | 120.57 (17) |
C111—C110—C19 | 119.2 (2) | C211—C210—C29 | 119.1 (2) |
C111—C110—H110 | 120.4 | C211—C210—H210 | 120.5 |
C19—C110—H110 | 120.4 | C29—C210—H210 | 120.5 |
C112—C111—C110 | 119.9 (2) | C212—C211—C210 | 119.7 (2) |
C112—C111—H111 | 120.0 | C212—C211—H211 | 120.1 |
C110—C111—H111 | 120.0 | C210—C211—H211 | 120.1 |
C113—C112—C111 | 118.0 (2) | C211—C212—C213 | 118.48 (19) |
C113—C112—H112 | 121.0 | C211—C212—H212 | 120.8 |
C111—C112—H112 | 121.0 | C213—C212—H212 | 120.8 |
N14—C113—C112 | 123.7 (2) | N24—C213—C212 | 122.8 (2) |
N14—C113—H113 | 118.1 | N24—C213—H213 | 118.6 |
C112—C113—H113 | 118.1 | C212—C213—H213 | 118.6 |
C11—N12—N13—C12 | 178.38 (16) | C21—N22—N23—C22 | −178.29 (16) |
N13—N12—C11—O1 | −174.77 (15) | N23—N22—C21—O2 | 176.43 (15) |
N13—N12—C11—N11 | 7.2 (2) | N23—N22—C21—N21 | −5.0 (2) |
N12—N13—C12—C19 | 1.8 (3) | N22—N23—C22—C23 | 178.90 (15) |
N12—N13—C12—C13 | −178.45 (15) | N22—N23—C22—C29 | −1.2 (3) |
N13—C12—C13—C18 | 142.89 (18) | N23—C22—C23—C28 | −145.14 (19) |
C19—C12—C13—C18 | −37.3 (3) | C29—C22—C23—C28 | 34.9 (3) |
N13—C12—C13—C14 | −33.1 (2) | N23—C22—C23—C24 | 32.8 (3) |
C19—C12—C13—C14 | 146.70 (18) | C29—C22—C23—C24 | −147.07 (18) |
C18—C13—C14—C15 | 0.6 (3) | C28—C23—C24—C25 | 0.4 (3) |
C12—C13—C14—C15 | 176.71 (19) | C22—C23—C24—C25 | −177.65 (18) |
C13—C14—C15—C16 | −1.1 (3) | C23—C24—C25—C26 | 0.0 (3) |
C14—C15—C16—C17 | 1.4 (3) | C24—C25—C26—C27 | −0.3 (3) |
C15—C16—C17—C18 | −1.2 (3) | C25—C26—C27—C28 | 0.2 (3) |
C16—C17—C18—C13 | 0.8 (3) | C26—C27—C28—C23 | 0.2 (3) |
C14—C13—C18—C17 | −0.4 (3) | C24—C23—C28—C27 | −0.5 (3) |
C12—C13—C18—C17 | −176.51 (18) | C22—C23—C28—C27 | 177.56 (19) |
C113—N14—C19—C110 | 1.3 (3) | C213—N24—C29—C210 | −2.5 (3) |
C113—N14—C19—C12 | −179.70 (17) | C213—N24—C29—C22 | 178.06 (18) |
N13—C12—C19—N14 | −24.8 (3) | N23—C22—C29—N24 | 29.3 (3) |
C13—C12—C19—N14 | 155.40 (16) | C23—C22—C29—N24 | −150.77 (17) |
N13—C12—C19—C110 | 154.13 (19) | N23—C22—C29—C210 | −150.11 (19) |
C13—C12—C19—C110 | −25.6 (3) | C23—C22—C29—C210 | 29.8 (3) |
N14—C19—C110—C111 | −1.9 (3) | N24—C29—C210—C211 | 3.5 (3) |
C12—C19—C110—C111 | 179.14 (18) | C22—C29—C210—C211 | −177.08 (19) |
C19—C110—C111—C112 | 0.8 (3) | C29—C210—C211—C212 | −1.6 (3) |
C110—C111—C112—C113 | 0.9 (3) | C210—C211—C212—C213 | −1.2 (3) |
C19—N14—C113—C112 | 0.4 (3) | C29—N24—C213—C212 | −0.4 (3) |
C111—C112—C113—N14 | −1.6 (3) | C211—C212—C213—N24 | 2.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11A···O1i | 0.86 | 2.17 | 3.029 (2) | 178 |
N11—H11B···O2ii | 0.86 | 2.33 | 2.917 (2) | 126 |
N21—H21B···O1ii | 0.86 | 2.27 | 2.883 (2) | 128 |
N21—H21A···O2iii | 0.86 | 2.15 | 3.005 (2) | 173 |
N12—H12···N14 | 0.86 | 2.06 | 2.683 (2) | 129 |
N22—H22···N24 | 0.86 | 2.10 | 2.712 (2) | 128 |
Symmetry codes: (i) −x+1/2, −y+1/2, −z; (ii) −x+1/2, y+1/2, −z+1/2; (iii) −x+1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C13H12N4O |
Mr | 240.27 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 294 |
a, b, c (Å) | 22.9281 (7), 9.1868 (2), 23.1869 (7) |
β (°) | 93.049 (1) |
V (Å3) | 4877.1 (2) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.18 × 0.14 × 0.04 |
Data collection | |
Diffractometer | KappaCCD |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16551, 4588, 3011 |
Rint | 0.066 |
(sin θ/λ)max (Å−1) | 0.610 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.150, 1.07 |
No. of reflections | 4588 |
No. of parameters | 325 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.22 |
Computer programs: COLLECT (Enraf–Nonius, 2000), DENZO and SCALEPACK (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
O1—C11 | 1.2360 (19) | O2—C21 | 1.2390 (19) |
N11—C11 | 1.321 (2) | N21—C21 | 1.321 (2) |
N12—C11 | 1.364 (2) | N22—C21 | 1.364 (2) |
N12—N13 | 1.3705 (19) | N22—N23 | 1.3665 (18) |
N13—C12 | 1.294 (2) | N23—C22 | 1.295 (2) |
C12—C19 | 1.484 (2) | C22—C23 | 1.487 (2) |
C12—C13 | 1.493 (2) | C22—C29 | 1.490 (2) |
C11—N12—N13 | 118.90 (14) | C21—N22—N23 | 118.96 (14) |
C12—N13—N12 | 120.51 (15) | C22—N23—N22 | 120.40 (14) |
O1—C11—N11 | 123.66 (17) | O2—C21—N21 | 123.56 (16) |
O1—C11—N12 | 119.14 (15) | O2—C21—N22 | 119.28 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11A···O1i | 0.860 | 2.169 | 3.029 (2) | 178.0 |
N11—H11B···O2ii | 0.860 | 2.332 | 2.917 (2) | 125.5 |
N21—H21B···O1ii | 0.860 | 2.273 | 2.883 (2) | 128.0 |
N21—H21A···O2iii | 0.860 | 2.150 | 3.005 (2) | 172.9 |
N12—H12···N14 | 0.860 | 2.055 | 2.683 (2) | 129.2 |
N22—H22···N24 | 0.860 | 2.095 | 2.712 (2) | 128.2 |
Symmetry codes: (i) −x+1/2, −y+1/2, −z; (ii) −x+1/2, y+1/2, −z+1/2; (iii) −x+1/2, −y+1/2, −z+1. |
Semicarbazones present a wide range of biological applications as antitumoral, anticonvulsant, anti-trypanosomal, herbicidal and biocidal agents (Beraldo & Gambino, 2004; Beraldo et al., 2002; Teixeira et al., 2003). In some cases complexation to metal ions can improve properties of these ligands, such as lipophilicity and pharmacological activity. Moreover, mechanisms of action of bioactive compounds can involve coordination to metal-containing enzymes (Farrell, 2002). As part of our research aiming to understand the molecular and biological properties of semicarbazones we previously prepared 2-Benzoylpyridine semicarbazone (H2Bz4PS) and its Cu(II) and Zn(II) complexes (Pérez-Rebolledo et al., 2006). Here we describe the synthesis and crystal structure of H2Bz4PS (Fig. 1).
The molecular conformation can be described using three planar groups, the phenyl ring, the pyridyl ring and the semicarbazone group. The dihedral angles between the least-square planes through the semicarbazone group and the pyridyl ring are 22.70° and 27.26°, for molecule I and II respectively. The angle between the least-square planes through the semicarbazone group and phenyl ring are almost the same, 32.96° and 32.49°, for molecule I and II respectively. The dihedral angles between the phenyl and the pyridyl rings are 53.12° and 53.99° for molecule I and II respectively. The molecular conformation is fixed by an intramolecular interactions of the N—H···N type, N12—H12···N14 for molecule I and N22—H22···N24 for molecule II. The crystal packing is stabilized by N—H···O intermolecular interactions that form centrosymmetric dimers (Fig. 2). Another N—H···O hydrogen bond gives rise to the formation of infinite chains along the b axis.