



Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536808016164/xu2416sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S1600536808016164/xu2416Isup2.hkl |
CCDC reference: 696487
Key indicators
- Single-crystal X-ray study
- T = 93 K
- Mean
(C-C) = 0.001 Å
- Disorder in main residue
- R factor = 0.039
- wR factor = 0.121
- Data-to-parameter ratio = 31.7
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT301_ALERT_3_B Main Residue Disorder ......................... 29.00 Perc.
Alert level C PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.40 Ratio
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
To a solution of cyclododecylamine (8.18 mmol) and triethylamine (14.39 mmol) in THF (50 ml), dansylchloride (9.63 mmol) in THF (50 ml) was added dropwise and refluxed for 2 h. After evaporation of the solvent under reduced pressure, the residue was dissolved in water/chloroform (100 ml of each). The organic extract was dried (Na2SO4) and the solvent distilled off. Recrystallization from n-hexane/dichloromethane (1:1) yielded light yellow crystals. (34%). Anal. Calcd. for C24H36N2O2S: C, 69.19; H, 8.71; N, 6.72; Found: C, 69.21; H, 8.83; N, 7.00%.
The cyclododecyl ring is disordered over two positions and refinement of occupancies converged to 0.8623:1377. H atoms of the major component of the disordered cyclododecyl were located in a difference Fourier map and refined isotropically. Imino H atom was also located in a difference Fourier map and refined isotropically. Other H atoms were positioned geometrically and allowed to ride on their parent atoms, with C–H = 0.95 - 0.99 Å, and refined in a riding mode with Uiso(H) = 1.2 or 1.5Ueq(C).
Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
![]() | Fig. 1. Molecular structure of the title compound with 30% probability displacement ellipsoids. |
C24H36N2O2S | F(000) = 904 |
Mr = 416.62 | Dx = 1.227 Mg m−3 |
Monoclinic, P21/c | Melting point: 437 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 10.3564 (3) Å | Cell parameters from 9249 reflections |
b = 13.5117 (4) Å | θ = 2.5–39.0° |
c = 16.2076 (4) Å | µ = 0.17 mm−1 |
β = 95.814 (1)° | T = 93 K |
V = 2256.30 (11) Å3 | Plate, light yellow |
Z = 4 | 0.54 × 0.42 × 0.29 mm |
Bruker Kappa APEXII CCD diffractometer | 14866 independent reflections |
Radiation source: fine-focus sealed tube | 10604 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.034 |
ϕ and ω scans | θmax = 41.0°, θmin = 2.0° |
Absorption correction: multi scan (SADABS; Sheldrick, 2002) | h = −18→19 |
Tmin = 0.826, Tmax = 0.954 | k = −24→24 |
71103 measured reflections | l = −29→29 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0655P)2 + 0.1633P] where P = (Fo2 + 2Fc2)/3 |
14866 reflections | (Δ/σ)max < 0.001 |
469 parameters | Δρmax = 0.46 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C24H36N2O2S | V = 2256.30 (11) Å3 |
Mr = 416.62 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.3564 (3) Å | µ = 0.17 mm−1 |
b = 13.5117 (4) Å | T = 93 K |
c = 16.2076 (4) Å | 0.54 × 0.42 × 0.29 mm |
β = 95.814 (1)° |
Bruker Kappa APEXII CCD diffractometer | 14866 independent reflections |
Absorption correction: multi scan (SADABS; Sheldrick, 2002) | 10604 reflections with I > 2σ(I) |
Tmin = 0.826, Tmax = 0.954 | Rint = 0.034 |
71103 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.46 e Å−3 |
14866 reflections | Δρmin = −0.26 e Å−3 |
469 parameters |
Experimental. 1H NMR (400 MHz, CDCl3, δ, p.p.m.): 0.95 (4H, m, CH2, 1.09 (4H, m, CH2), 1.20 (12H, m, CH2), 1.41 (2H, m, CH2), 2.88 (6H, s, N(CH3)2), 3.20 (1H, m, CHNH), 4.57 (1H, s, CHNH), 7.17 (1H, d, ArH), 7.53 (2H, d, ArH), 8.32 (2H, m, ArH), 8.52 (1H, d, ArH). 13C NMR (100 MHz, CDCl3, δ, p.p.m.): 21.09, 23.06, 23.17, 23.24, 23.52, 31.13 (CH2), 45.36 (N(CH3)2), 50.53 (CHNH), 115.03 (6-ArC), 119.00, 123.09 (2-, 8-ArC), 128.21, 129.61, 129.76, 129.84, 130.24 (3-,4-,4a-,7-,8a-ArC), 135.57 (1-ArC), 151.89 (5-ArC). IR (KBr): 3290 (N—H); 3076, 3051 (C—Har); 2937, 2862 (C—Halk); 2787 (N—CH3); 1620, 1592, 1574 (C?C); 1474; 1453; 1413; 1356; 1313; 1231; 1206; 1164; 1150; 1092; 1074; 1060; 1028; 946; 882; 792; 689; 632; 578. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.039201 (15) | 0.332136 (11) | 0.456193 (9) | 0.01773 (4) | |
O1 | −0.06052 (5) | 0.36676 (4) | 0.50517 (3) | 0.02297 (10) | |
O2 | 0.11146 (5) | 0.24527 (4) | 0.48235 (3) | 0.02405 (10) | |
N1 | −0.23380 (5) | 0.42906 (4) | 0.08519 (3) | 0.01851 (9) | |
N2 | 0.14083 (5) | 0.42236 (4) | 0.45239 (3) | 0.01769 (9) | |
H2' | 0.1060 (11) | 0.4782 (9) | 0.4485 (7) | 0.034 (3)* | |
C1 | −0.21013 (5) | 0.44354 (4) | 0.17181 (4) | 0.01559 (9) | |
C2 | −0.25882 (6) | 0.52375 (5) | 0.21154 (4) | 0.01812 (10) | |
H2 | −0.3110 | 0.5712 | 0.1804 | 0.022* | |
C3 | −0.23173 (7) | 0.53578 (5) | 0.29785 (4) | 0.01954 (11) | |
H3 | −0.2671 | 0.5909 | 0.3242 | 0.023* | |
C4 | −0.15557 (6) | 0.46971 (5) | 0.34466 (4) | 0.01791 (10) | |
H4 | −0.1360 | 0.4807 | 0.4025 | 0.021* | |
C5 | −0.10584 (6) | 0.38498 (4) | 0.30710 (4) | 0.01552 (9) | |
C6 | −0.02721 (6) | 0.31162 (4) | 0.35209 (4) | 0.01712 (10) | |
C7 | 0.01112 (7) | 0.22697 (5) | 0.31416 (4) | 0.02077 (11) | |
H7 | 0.0636 | 0.1796 | 0.3452 | 0.025* | |
C8 | −0.02742 (7) | 0.21044 (5) | 0.22930 (5) | 0.02228 (12) | |
H8 | −0.0040 | 0.1506 | 0.2039 | 0.027* | |
C9 | −0.09844 (6) | 0.28033 (5) | 0.18340 (4) | 0.01948 (10) | |
H9 | −0.1227 | 0.2687 | 0.1261 | 0.023* | |
C10 | −0.13641 (5) | 0.36992 (4) | 0.21999 (4) | 0.01529 (9) | |
C11 | −0.11742 (7) | 0.43858 (6) | 0.04101 (4) | 0.02615 (13) | |
H11A | −0.0945 | 0.5087 | 0.0370 | 0.039* | |
H11B | −0.1349 | 0.4107 | −0.0148 | 0.039* | |
H11C | −0.0453 | 0.4027 | 0.0714 | 0.039* | |
C12 | −0.33772 (7) | 0.48886 (6) | 0.04336 (4) | 0.02499 (13) | |
H12A | −0.4145 | 0.4848 | 0.0739 | 0.037* | |
H12B | −0.3593 | 0.4641 | −0.0132 | 0.037* | |
H12C | −0.3092 | 0.5579 | 0.0413 | 0.037* | |
C13 | 0.26599 (10) | 0.40723 (8) | 0.41631 (6) | 0.01599 (15) | 0.8623 (12) |
H13 | 0.2564 (11) | 0.3489 (8) | 0.3830 (7) | 0.015 (2)* | 0.8623 (12) |
C14 | 0.29031 (8) | 0.49533 (6) | 0.36018 (5) | 0.01951 (13) | 0.8623 (12) |
H14A | 0.3902 (12) | 0.5005 (9) | 0.3563 (7) | 0.026 (3)* | 0.8623 (12) |
H14B | 0.2651 (13) | 0.5557 (10) | 0.3868 (8) | 0.031 (3)* | 0.8623 (12) |
C15 | 0.21831 (8) | 0.48964 (6) | 0.27273 (5) | 0.02269 (15) | 0.8623 (12) |
H15A | 0.1238 (12) | 0.4829 (9) | 0.2768 (7) | 0.025 (3)* | 0.8623 (12) |
H15B | 0.2324 (13) | 0.5552 (10) | 0.2449 (8) | 0.031 (3)* | 0.8623 (12) |
C16 | 0.25964 (11) | 0.40350 (9) | 0.21972 (7) | 0.02426 (19) | 0.8623 (12) |
H16A | 0.2467 (12) | 0.3403 (9) | 0.2514 (8) | 0.020 (3)* | 0.8623 (12) |
H16B | 0.2029 (13) | 0.4015 (10) | 0.1665 (8) | 0.032 (3)* | 0.8623 (12) |
C17 | 0.39987 (9) | 0.40970 (6) | 0.19824 (5) | 0.02443 (15) | 0.8623 (12) |
H17A | 0.4599 (12) | 0.4308 (9) | 0.2472 (8) | 0.026 (3)* | 0.8623 (12) |
H17B | 0.4033 (14) | 0.4678 (11) | 0.1564 (9) | 0.041 (4)* | 0.8623 (12) |
C18 | 0.45099 (12) | 0.31286 (7) | 0.16479 (6) | 0.02798 (18) | 0.8623 (12) |
H18A | 0.5359 (15) | 0.3266 (11) | 0.1369 (9) | 0.040 (4)* | 0.8623 (12) |
H18B | 0.3903 (16) | 0.2865 (13) | 0.1204 (10) | 0.051 (4)* | 0.8623 (12) |
C19 | 0.47808 (14) | 0.23333 (9) | 0.23171 (8) | 0.0257 (2) | 0.8623 (12) |
H19A | 0.4022 (12) | 0.2275 (9) | 0.2587 (8) | 0.027 (3)* | 0.8623 (12) |
H19B | 0.4843 (15) | 0.1656 (11) | 0.2067 (9) | 0.042 (4)* | 0.8623 (12) |
C20 | 0.59746 (8) | 0.25578 (6) | 0.29262 (6) | 0.02371 (15) | 0.8623 (12) |
H20A | 0.6066 (13) | 0.3314 (9) | 0.2995 (8) | 0.027 (3)* | 0.8623 (12) |
H20B | 0.6733 (13) | 0.2330 (10) | 0.2690 (8) | 0.033 (3)* | 0.8623 (12) |
C21 | 0.59636 (9) | 0.20577 (6) | 0.37710 (6) | 0.02530 (16) | 0.8623 (12) |
H21A | 0.5887 (13) | 0.1346 (10) | 0.3676 (8) | 0.032 (3)* | 0.8623 (12) |
H21B | 0.6813 (12) | 0.2197 (9) | 0.4102 (8) | 0.025 (3)* | 0.8623 (12) |
C22 | 0.48776 (10) | 0.24042 (7) | 0.42801 (6) | 0.02177 (15) | 0.8623 (12) |
H22A | 0.4013 (12) | 0.2295 (9) | 0.3935 (7) | 0.024 (3)* | 0.8623 (12) |
H22B | 0.4854 (13) | 0.1965 (10) | 0.4788 (8) | 0.030 (3)* | 0.8623 (12) |
C23 | 0.50024 (8) | 0.34853 (6) | 0.45558 (5) | 0.02195 (14) | 0.8623 (12) |
H23A | 0.5261 (11) | 0.3903 (9) | 0.4092 (7) | 0.022 (3)* | 0.8623 (12) |
H23B | 0.5757 (12) | 0.3529 (9) | 0.4994 (8) | 0.027 (3)* | 0.8623 (12) |
C24 | 0.37593 (8) | 0.39027 (6) | 0.48608 (5) | 0.01908 (13) | 0.8623 (12) |
H24A | 0.3437 (12) | 0.3419 (8) | 0.5269 (8) | 0.021 (3)* | 0.8623 (12) |
H24B | 0.3937 (12) | 0.4520 (9) | 0.5149 (8) | 0.026 (3)* | 0.8623 (12) |
C13A | 0.2423 (7) | 0.4184 (5) | 0.3938 (4) | 0.0194 (11) | 0.1377 (12) |
H13A | 0.2460 | 0.3492 | 0.3722 | 0.023* | 0.1377 (12) |
C14A | 0.2135 (5) | 0.4874 (4) | 0.3205 (3) | 0.0217 (9) | 0.1377 (12) |
H14C | 0.2274 | 0.5566 | 0.3396 | 0.026* | 0.1377 (12) |
H14D | 0.1211 | 0.4805 | 0.2989 | 0.026* | 0.1377 (12) |
C15A | 0.2983 (6) | 0.4673 (4) | 0.2497 (4) | 0.0269 (10) | 0.1377 (12) |
H15C | 0.2839 | 0.5208 | 0.2081 | 0.032* | 0.1377 (12) |
H15D | 0.3907 | 0.4697 | 0.2724 | 0.032* | 0.1377 (12) |
C16A | 0.2720 (8) | 0.3687 (6) | 0.2067 (5) | 0.0289 (13) | 0.1377 (12) |
H16C | 0.1888 | 0.3727 | 0.1710 | 0.035* | 0.1377 (12) |
H16D | 0.2629 | 0.3171 | 0.2491 | 0.035* | 0.1377 (12) |
C17A | 0.3806 (6) | 0.3380 (5) | 0.1532 (4) | 0.0292 (11) | 0.1377 (12) |
H17C | 0.3500 | 0.2805 | 0.1186 | 0.035* | 0.1377 (12) |
H17D | 0.3959 | 0.3932 | 0.1152 | 0.035* | 0.1377 (12) |
C18A | 0.5089 (6) | 0.3109 (4) | 0.2021 (4) | 0.0262 (10) | 0.1377 (12) |
H18C | 0.5739 | 0.3006 | 0.1621 | 0.031* | 0.1377 (12) |
H18D | 0.5380 | 0.3684 | 0.2370 | 0.031* | 0.1377 (12) |
C19A | 0.5103 (9) | 0.2219 (7) | 0.2568 (5) | 0.0290 (14) | 0.1377 (12) |
H19C | 0.5224 | 0.1629 | 0.2222 | 0.035* | 0.1377 (12) |
H19D | 0.4235 | 0.2160 | 0.2770 | 0.035* | 0.1377 (12) |
C20A | 0.6097 (5) | 0.2175 (4) | 0.3309 (3) | 0.0226 (9) | 0.1377 (12) |
H20C | 0.6965 | 0.2290 | 0.3121 | 0.027* | 0.1377 (12) |
H20D | 0.6094 | 0.1500 | 0.3546 | 0.027* | 0.1377 (12) |
C21A | 0.5887 (5) | 0.2918 (4) | 0.3989 (3) | 0.0226 (9) | 0.1377 (12) |
H21C | 0.6677 | 0.2934 | 0.4388 | 0.027* | 0.1377 (12) |
H21D | 0.5779 | 0.3584 | 0.3736 | 0.027* | 0.1377 (12) |
C22A | 0.4735 (6) | 0.2708 (5) | 0.4459 (4) | 0.0227 (10) | 0.1377 (12) |
H22C | 0.4006 | 0.2494 | 0.4056 | 0.027* | 0.1377 (12) |
H22D | 0.4958 | 0.2145 | 0.4837 | 0.027* | 0.1377 (12) |
C23A | 0.4269 (5) | 0.3538 (4) | 0.4958 (3) | 0.0227 (9) | 0.1377 (12) |
H23C | 0.5009 | 0.3787 | 0.5335 | 0.027* | 0.1377 (12) |
H23D | 0.3614 | 0.3277 | 0.5305 | 0.027* | 0.1377 (12) |
C24A | 0.3680 (5) | 0.4397 (4) | 0.4452 (3) | 0.0220 (9) | 0.1377 (12) |
H24C | 0.3535 | 0.4948 | 0.4835 | 0.026* | 0.1377 (12) |
H24D | 0.4317 | 0.4628 | 0.4078 | 0.026* | 0.1377 (12) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01813 (7) | 0.01768 (7) | 0.01798 (6) | 0.00164 (5) | 0.00484 (5) | 0.00483 (5) |
O1 | 0.0224 (2) | 0.0277 (2) | 0.0202 (2) | 0.00305 (18) | 0.00882 (17) | 0.00475 (17) |
O2 | 0.0248 (2) | 0.0197 (2) | 0.0278 (2) | 0.00326 (17) | 0.00366 (18) | 0.00930 (18) |
N1 | 0.0155 (2) | 0.0247 (2) | 0.01568 (19) | 0.00039 (17) | 0.00316 (16) | −0.00216 (17) |
N2 | 0.0186 (2) | 0.0165 (2) | 0.0185 (2) | 0.00146 (17) | 0.00489 (17) | 0.00115 (16) |
C1 | 0.0131 (2) | 0.0173 (2) | 0.0167 (2) | −0.00111 (17) | 0.00304 (17) | −0.00180 (17) |
C2 | 0.0187 (2) | 0.0171 (2) | 0.0185 (2) | 0.00267 (19) | 0.00184 (19) | −0.00127 (19) |
C3 | 0.0226 (3) | 0.0173 (2) | 0.0189 (2) | 0.0045 (2) | 0.0028 (2) | −0.00262 (19) |
C4 | 0.0204 (2) | 0.0166 (2) | 0.0170 (2) | 0.00290 (19) | 0.00259 (19) | −0.00208 (18) |
C5 | 0.0148 (2) | 0.0140 (2) | 0.0182 (2) | −0.00004 (17) | 0.00383 (17) | −0.00080 (17) |
C6 | 0.0167 (2) | 0.0147 (2) | 0.0205 (2) | 0.00090 (18) | 0.00426 (18) | 0.00131 (18) |
C7 | 0.0205 (3) | 0.0149 (2) | 0.0275 (3) | 0.00235 (19) | 0.0049 (2) | 0.0006 (2) |
C8 | 0.0221 (3) | 0.0164 (2) | 0.0290 (3) | 0.0023 (2) | 0.0058 (2) | −0.0049 (2) |
C9 | 0.0182 (2) | 0.0176 (2) | 0.0231 (3) | −0.00017 (19) | 0.0049 (2) | −0.0059 (2) |
C10 | 0.0136 (2) | 0.0147 (2) | 0.0181 (2) | −0.00075 (16) | 0.00396 (17) | −0.00231 (17) |
C11 | 0.0223 (3) | 0.0366 (4) | 0.0209 (3) | 0.0001 (3) | 0.0090 (2) | −0.0012 (3) |
C12 | 0.0225 (3) | 0.0328 (3) | 0.0192 (3) | 0.0043 (2) | −0.0004 (2) | −0.0007 (2) |
C13 | 0.0180 (4) | 0.0155 (3) | 0.0149 (4) | 0.0001 (3) | 0.0041 (3) | −0.0004 (3) |
C14 | 0.0211 (3) | 0.0178 (3) | 0.0202 (3) | −0.0010 (2) | 0.0051 (2) | 0.0013 (2) |
C15 | 0.0194 (3) | 0.0273 (4) | 0.0217 (3) | 0.0012 (3) | 0.0042 (2) | 0.0074 (3) |
C16 | 0.0239 (4) | 0.0321 (5) | 0.0170 (4) | −0.0055 (4) | 0.0032 (3) | 0.0019 (4) |
C17 | 0.0291 (4) | 0.0230 (3) | 0.0230 (3) | −0.0026 (3) | 0.0113 (3) | 0.0045 (3) |
C18 | 0.0400 (6) | 0.0270 (4) | 0.0185 (3) | −0.0025 (4) | 0.0104 (4) | −0.0012 (3) |
C19 | 0.0334 (6) | 0.0189 (4) | 0.0258 (5) | −0.0070 (4) | 0.0072 (4) | −0.0033 (4) |
C20 | 0.0234 (3) | 0.0205 (3) | 0.0289 (4) | −0.0014 (3) | 0.0111 (3) | −0.0005 (3) |
C21 | 0.0275 (4) | 0.0203 (3) | 0.0292 (4) | 0.0075 (3) | 0.0080 (3) | 0.0018 (3) |
C22 | 0.0267 (4) | 0.0159 (3) | 0.0237 (4) | 0.0017 (3) | 0.0076 (3) | 0.0011 (3) |
C23 | 0.0187 (3) | 0.0197 (3) | 0.0271 (3) | 0.0014 (2) | 0.0011 (3) | −0.0044 (3) |
C24 | 0.0201 (3) | 0.0196 (3) | 0.0172 (3) | 0.0015 (3) | 0.0002 (2) | −0.0037 (2) |
C13A | 0.018 (3) | 0.020 (2) | 0.020 (3) | 0.0042 (18) | 0.002 (2) | 0.002 (2) |
C14A | 0.027 (2) | 0.0186 (19) | 0.020 (2) | 0.0021 (16) | 0.0067 (16) | 0.0068 (15) |
C15A | 0.029 (2) | 0.023 (2) | 0.031 (2) | 0.0003 (18) | 0.012 (2) | 0.0089 (18) |
C16A | 0.023 (3) | 0.036 (4) | 0.028 (3) | −0.007 (3) | 0.002 (2) | 0.001 (3) |
C17A | 0.029 (3) | 0.040 (3) | 0.020 (2) | −0.002 (2) | 0.0107 (19) | 0.007 (2) |
C18A | 0.030 (3) | 0.026 (2) | 0.024 (2) | −0.0026 (19) | 0.012 (2) | 0.0017 (18) |
C19A | 0.033 (4) | 0.028 (3) | 0.027 (3) | −0.007 (3) | 0.011 (3) | −0.006 (3) |
C20A | 0.027 (2) | 0.0194 (19) | 0.022 (2) | 0.0026 (16) | 0.0073 (17) | 0.0040 (17) |
C21A | 0.0190 (19) | 0.024 (2) | 0.025 (2) | 0.0020 (16) | 0.0036 (16) | −0.0023 (17) |
C22A | 0.024 (2) | 0.021 (2) | 0.023 (2) | 0.0085 (19) | 0.0006 (18) | 0.0006 (19) |
C23A | 0.0167 (19) | 0.026 (2) | 0.024 (2) | 0.0079 (17) | −0.0056 (15) | −0.0060 (17) |
C24A | 0.0172 (18) | 0.0193 (19) | 0.029 (2) | 0.0022 (15) | −0.0011 (16) | −0.0050 (17) |
S1—O2 | 1.4328 (5) | C19—H19A | 0.941 (13) |
S1—O1 | 1.4428 (5) | C19—H19B | 1.006 (15) |
S1—N2 | 1.6157 (6) | C20—C21 | 1.5280 (13) |
S1—C6 | 1.7781 (7) | C20—H20A | 1.031 (12) |
N1—C1 | 1.4140 (8) | C20—H20B | 0.959 (14) |
N1—C12 | 1.4570 (9) | C21—C22 | 1.5340 (13) |
N1—C11 | 1.4687 (8) | C21—H21A | 0.975 (13) |
N2—C13A | 1.487 (7) | C21—H21B | 1.001 (12) |
N2—C13 | 1.4891 (12) | C22—C23 | 1.5292 (13) |
N2—H2' | 0.835 (12) | C22—H22A | 1.017 (12) |
C1—C2 | 1.3818 (8) | C22—H22B | 1.017 (13) |
C1—C10 | 1.4357 (9) | C23—C24 | 1.5326 (11) |
C2—C3 | 1.4080 (9) | C23—H23A | 0.997 (12) |
C2—H2 | 0.9500 | C23—H23B | 1.003 (13) |
C3—C4 | 1.3686 (9) | C24—H24A | 1.011 (12) |
C3—H3 | 0.9500 | C24—H24B | 0.965 (13) |
C4—C5 | 1.4178 (8) | C13A—C24A | 1.501 (8) |
C4—H4 | 0.9500 | C13A—C14A | 1.516 (8) |
C5—C10 | 1.4298 (8) | C13A—H13 | 0.968 (13) |
C5—C6 | 1.4341 (8) | C13A—H13A | 1.0000 |
C6—C7 | 1.3760 (9) | C14A—C15A | 1.538 (7) |
C7—C8 | 1.4105 (10) | C14A—H14C | 0.9900 |
C7—H7 | 0.9500 | C14A—H14D | 0.9900 |
C8—C9 | 1.3694 (10) | C15A—C16A | 1.516 (10) |
C8—H8 | 0.9500 | C15A—H15C | 0.9900 |
C9—C10 | 1.4209 (8) | C15A—H15D | 0.9900 |
C9—H9 | 0.9500 | C16A—C17A | 1.545 (10) |
C11—H11A | 0.9800 | C16A—H16C | 0.9900 |
C11—H11B | 0.9800 | C16A—H16D | 0.9900 |
C11—H11C | 0.9800 | C17A—C18A | 1.521 (9) |
C12—H12A | 0.9800 | C17A—H17C | 0.9900 |
C12—H12B | 0.9800 | C17A—H17D | 0.9900 |
C12—H12C | 0.9800 | C18A—C19A | 1.494 (10) |
C13—C14 | 1.5344 (12) | C18A—H18C | 0.9900 |
C13—C24 | 1.5384 (13) | C18A—H18D | 0.9900 |
C13—H13 | 0.954 (11) | C19A—C20A | 1.501 (10) |
C14—C15 | 1.5352 (12) | C19A—H19C | 0.9900 |
C14—H14A | 1.045 (12) | C19A—H19D | 0.9900 |
C14—H14B | 0.970 (13) | C20A—C21A | 1.523 (7) |
C15—C16 | 1.5331 (15) | C20A—H20C | 0.9900 |
C15—H15A | 0.991 (12) | C20A—H20D | 0.9900 |
C15—H15B | 1.012 (13) | C21A—C22A | 1.507 (8) |
C16—C17 | 1.5296 (14) | C21A—H21C | 0.9900 |
C16—H16A | 1.012 (12) | C21A—H21D | 0.9900 |
C16—H16B | 0.994 (13) | C22A—C23A | 1.490 (8) |
C17—C18 | 1.5312 (13) | C22A—H22C | 0.9900 |
C17—H17A | 0.998 (13) | C22A—H22D | 0.9900 |
C17—H17B | 1.040 (15) | C23A—C24A | 1.513 (7) |
C18—C19 | 1.5324 (16) | C23A—H23C | 0.9900 |
C18—H18A | 1.045 (15) | C23A—H23D | 0.9900 |
C18—H18B | 0.974 (17) | C24A—H24C | 0.9900 |
C19—C20 | 1.5323 (16) | C24A—H24D | 0.9900 |
O2—S1—O1 | 118.96 (3) | C22—C21—H21B | 107.9 (7) |
O2—S1—N2 | 107.86 (3) | H21A—C21—H21B | 108.9 (11) |
O1—S1—N2 | 106.36 (3) | C23—C22—C21 | 113.82 (7) |
O2—S1—C6 | 107.06 (3) | C23—C22—H22A | 110.1 (7) |
O1—S1—C6 | 110.06 (3) | C21—C22—H22A | 108.2 (7) |
N2—S1—C6 | 105.80 (3) | C23—C22—H22B | 109.2 (7) |
C1—N1—C12 | 115.52 (5) | C21—C22—H22B | 109.6 (8) |
C1—N1—C11 | 113.81 (5) | H22A—C22—H22B | 105.6 (10) |
C12—N1—C11 | 109.18 (6) | C22—C23—C24 | 113.38 (7) |
C13A—N2—S1 | 120.1 (3) | C22—C23—H23A | 110.0 (7) |
C13—N2—S1 | 120.51 (5) | C24—C23—H23A | 109.5 (7) |
C13A—N2—H2' | 108.1 (8) | C22—C23—H23B | 107.4 (7) |
C13—N2—H2' | 118.7 (8) | C24—C23—H23B | 111.7 (7) |
S1—N2—H2' | 114.0 (8) | H23A—C23—H23B | 104.5 (10) |
C2—C1—N1 | 122.44 (6) | C23—C24—C13 | 113.65 (7) |
C2—C1—C10 | 119.27 (5) | C23—C24—H24A | 108.5 (7) |
N1—C1—C10 | 118.25 (5) | C13—C24—H24A | 108.0 (7) |
C1—C2—C3 | 120.54 (6) | C23—C24—H24B | 110.5 (7) |
C1—C2—H2 | 119.7 | C13—C24—H24B | 108.5 (7) |
C3—C2—H2 | 119.7 | H24A—C24—H24B | 107.6 (10) |
C4—C3—C2 | 121.40 (6) | N2—C13A—C24A | 105.5 (5) |
C4—C3—H3 | 119.3 | N2—C13A—C14A | 112.5 (5) |
C2—C3—H3 | 119.3 | C24A—C13A—C14A | 114.0 (6) |
C3—C4—C5 | 120.18 (6) | C24A—C13A—H13 | 98.5 (9) |
C3—C4—H4 | 119.9 | N2—C13A—H13A | 108.2 |
C5—C4—H4 | 119.9 | C13A—C14A—C15A | 113.2 (5) |
C4—C5—C10 | 119.02 (5) | C13A—C14A—H14C | 108.9 |
C4—C5—C6 | 123.51 (5) | C15A—C14A—H14C | 108.9 |
C10—C5—C6 | 117.47 (5) | H15A—C14A—H14C | 109.7 |
C7—C6—C5 | 121.47 (6) | C13A—C14A—H14D | 108.9 |
C7—C6—S1 | 116.88 (5) | C15A—C14A—H14D | 108.9 |
C5—C6—S1 | 121.32 (4) | H14C—C14A—H14D | 107.8 |
C6—C7—C8 | 120.09 (6) | C16A—C15A—C14A | 114.1 (5) |
C6—C7—H7 | 120.0 | C16A—C15A—H15C | 108.7 |
C8—C7—H7 | 120.0 | C14A—C15A—H15C | 108.7 |
C9—C8—C7 | 120.25 (6) | C16A—C15A—H15D | 108.7 |
C9—C8—H8 | 119.9 | C14A—C15A—H15D | 108.7 |
C7—C8—H8 | 119.9 | H15C—C15A—H15D | 107.6 |
C8—C9—C10 | 121.13 (6) | C15A—C16A—C17A | 112.8 (6) |
C8—C9—H9 | 119.4 | C15A—C16A—H16C | 109.0 |
C10—C9—H9 | 119.4 | C17A—C16A—H16C | 109.0 |
C9—C10—C5 | 119.36 (6) | C15A—C16A—H16D | 109.0 |
C9—C10—C1 | 121.17 (5) | C17A—C16A—H16D | 109.0 |
C5—C10—C1 | 119.40 (5) | H16C—C16A—H16D | 107.8 |
N2—C13—C14 | 109.15 (7) | C18A—C17A—C16A | 114.7 (5) |
N2—C13—C24 | 109.92 (7) | C18A—C17A—H17C | 108.6 |
C14—C13—C24 | 113.43 (8) | C16A—C17A—H17C | 108.6 |
N2—C13—H13 | 106.9 (7) | C18A—C17A—H17D | 108.6 |
C14—C13—H13 | 108.6 (7) | C16A—C17A—H17D | 108.6 |
C24—C13—H13 | 108.6 (7) | H17C—C17A—H17D | 107.6 |
C13—C14—C15 | 114.52 (7) | C19A—C18A—H18C | 108.0 |
C13—C14—H14A | 108.1 (7) | C17A—C18A—H18C | 108.0 |
C15—C14—H14A | 109.8 (7) | C19A—C18A—H18D | 108.0 |
C13—C14—H14B | 108.7 (8) | C17A—C18A—H18D | 108.0 |
C15—C14—H14B | 109.0 (8) | H18C—C18A—H18D | 107.2 |
H14A—C14—H14B | 106.4 (10) | C18A—C19A—C20A | 118.1 (7) |
C16—C15—C14 | 114.73 (7) | C18A—C19A—H19C | 107.8 |
C16—C15—H15A | 107.5 (7) | C20A—C19A—H19C | 107.8 |
C14—C15—H15A | 109.5 (7) | C18A—C19A—H19D | 107.8 |
C16—C15—H15B | 110.7 (7) | C20A—C19A—H19D | 107.8 |
C14—C15—H15B | 106.8 (7) | H19C—C19A—H19D | 107.1 |
H15A—C15—H15B | 107.3 (10) | C19A—C20A—C21A | 114.6 (5) |
C17—C16—C15 | 114.29 (9) | C19A—C20A—H20C | 108.6 |
C17—C16—H16A | 109.8 (7) | C21A—C20A—H20C | 108.6 |
C15—C16—H16A | 107.3 (7) | C19A—C20A—H20D | 108.6 |
C17—C16—H16B | 107.1 (8) | C21A—C20A—H20D | 108.6 |
C15—C16—H16B | 109.5 (8) | H20C—C20A—H20D | 107.6 |
H16A—C16—H16B | 108.7 (10) | C22A—C21A—C20A | 114.9 (5) |
C16—C17—C18 | 113.83 (8) | C22A—C21A—H21C | 108.6 |
C16—C17—H17A | 111.3 (7) | C20A—C21A—H21C | 108.6 |
C18—C17—H17A | 108.4 (7) | C22A—C21A—H21D | 108.6 |
C16—C17—H17B | 106.6 (8) | C20A—C21A—H21D | 108.6 |
C18—C17—H17B | 112.2 (8) | H21C—C21A—H21D | 107.5 |
H17A—C17—H17B | 104.0 (11) | C23A—C22A—C21A | 116.7 (5) |
C17—C18—C19 | 113.18 (8) | C23A—C22A—H22B | 115.8 (9) |
C17—C18—H18A | 109.7 (8) | C21A—C22A—H22B | 110.4 (9) |
C19—C18—H18A | 109.2 (8) | C23A—C22A—H22C | 108.1 |
C17—C18—H18B | 110.7 (10) | C21A—C22A—H22C | 108.1 |
C19—C18—H18B | 108.9 (10) | C23A—C22A—H22D | 108.1 |
H18A—C18—H18B | 104.8 (13) | C21A—C22A—H22D | 108.1 |
C20—C19—C18 | 113.27 (9) | H22C—C22A—H22D | 107.3 |
C20—C19—H19A | 112.0 (8) | C24A—C23A—H23B | 112.0 (6) |
C18—C19—H19A | 106.7 (8) | C24A—C23A—H24A | 94.1 (8) |
C20—C19—H19B | 111.1 (9) | C24A—C23A—H24B | 45.9 (5) |
C18—C19—H19B | 111.6 (9) | C22A—C23A—H23C | 108.6 |
H19A—C19—H19B | 101.6 (11) | C24A—C23A—H23C | 108.6 |
C21—C20—C19 | 114.27 (8) | C22A—C23A—H23D | 108.6 |
C21—C20—H20A | 110.5 (7) | C24A—C23A—H23D | 108.6 |
C19—C20—H20A | 109.0 (7) | H23C—C23A—H23D | 107.6 |
C21—C20—H20B | 107.2 (8) | C13A—C24A—C23A | 115.7 (5) |
C19—C20—H20B | 108.6 (8) | C13A—C24A—H24C | 108.4 |
H20A—C20—H20B | 107.0 (11) | C23A—C24A—H24C | 108.4 |
C20—C21—C22 | 114.80 (7) | C13A—C24A—H24D | 108.4 |
C20—C21—H21A | 107.6 (8) | C23A—C24A—H24D | 108.4 |
C22—C21—H21A | 109.4 (8) | H24C—C24A—H24D | 107.4 |
C20—C21—H21B | 108.1 (7) | ||
O2—S1—N2—C13A | 62.8 (3) | C2—C1—C10—C5 | −5.06 (8) |
O1—S1—N2—C13A | −168.5 (3) | N1—C1—C10—C5 | 177.07 (5) |
C6—S1—N2—C13A | −51.5 (3) | C13A—N2—C13—C14 | 42.4 (10) |
O2—S1—N2—C13 | 42.85 (6) | S1—N2—C13—C14 | 136.27 (6) |
O1—S1—N2—C13 | 171.52 (6) | C13A—N2—C13—C24 | 167.4 (11) |
C6—S1—N2—C13 | −71.44 (6) | S1—N2—C13—C24 | −98.73 (7) |
C12—N1—C1—C2 | −14.76 (9) | N2—C13—C14—C15 | −81.47 (9) |
C11—N1—C1—C2 | 112.73 (7) | C24—C13—C14—C15 | 155.60 (7) |
C12—N1—C1—C10 | 163.04 (6) | C13—C14—C15—C16 | −64.30 (10) |
C11—N1—C1—C10 | −69.47 (7) | C14—C15—C16—C17 | −65.13 (10) |
N1—C1—C2—C3 | −179.36 (6) | C15—C16—C17—C18 | 165.48 (8) |
C10—C1—C2—C3 | 2.87 (9) | C16—C17—C18—C19 | −72.80 (12) |
C1—C2—C3—C4 | 0.86 (10) | C17—C18—C19—C20 | −71.53 (13) |
C2—C3—C4—C5 | −2.33 (10) | C18—C19—C20—C21 | 155.92 (8) |
C3—C4—C5—C10 | 0.04 (9) | C19—C20—C21—C22 | −64.74 (11) |
C3—C4—C5—C6 | −178.96 (6) | C20—C21—C22—C23 | −65.97 (11) |
C4—C5—C6—C7 | 175.23 (6) | C21—C22—C23—C24 | 165.03 (7) |
C10—C5—C6—C7 | −3.79 (9) | C22—C23—C24—C13 | −71.56 (10) |
C4—C5—C6—S1 | −11.56 (8) | N2—C13—C24—C23 | 165.44 (7) |
C10—C5—C6—S1 | 169.42 (4) | C14—C13—C24—C23 | −72.05 (9) |
O2—S1—C6—C7 | −6.61 (6) | C13—N2—C13A—C24A | −32.4 (8) |
O1—S1—C6—C7 | −137.25 (5) | S1—N2—C13A—C24A | −128.7 (4) |
N2—S1—C6—C7 | 108.23 (5) | C13—N2—C13A—C14A | −157.3 (15) |
O2—S1—C6—C5 | 179.88 (5) | S1—N2—C13A—C14A | 106.4 (5) |
O1—S1—C6—C5 | 49.24 (6) | N2—C13A—C14A—C15A | −166.6 (5) |
N2—S1—C6—C5 | −65.28 (5) | C24A—C13A—C14A—C15A | 73.3 (7) |
C5—C6—C7—C8 | −0.35 (10) | C13A—C14A—C15A—C16A | 66.8 (7) |
S1—C6—C7—C8 | −173.85 (5) | C14A—C15A—C16A—C17A | −164.6 (5) |
C6—C7—C8—C9 | 2.78 (10) | C15A—C16A—C17A—C18A | 69.2 (8) |
C7—C8—C9—C10 | −0.90 (10) | C16A—C17A—C18A—C19A | 64.7 (8) |
C8—C9—C10—C5 | −3.35 (9) | C17A—C18A—C19A—C20A | −153.6 (6) |
C8—C9—C10—C1 | 179.58 (6) | C18A—C19A—C20A—C21A | 68.7 (8) |
C4—C5—C10—C9 | −173.51 (6) | C19A—C20A—C21A—C22A | 70.4 (7) |
C6—C5—C10—C9 | 5.55 (8) | C20A—C21A—C22A—C23A | −163.5 (5) |
C4—C5—C10—C1 | 3.62 (8) | C21A—C22A—C23A—C24A | 67.6 (6) |
C6—C5—C10—C1 | −177.32 (5) | N2—C13A—C24A—C23A | 79.3 (6) |
C2—C1—C10—C9 | 172.01 (6) | C14A—C13A—C24A—C23A | −156.7 (5) |
N1—C1—C10—C9 | −5.86 (8) | C22A—C23A—C24A—C13A | 67.2 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.84 (1) | 2.28 (1) | 3.065 (1) | 154 (1) |
C4—H4···O1 | 0.95 | 2.34 | 3.026 (1) | 128 |
C20—H20A···CgAii | 1.031 (12) | 2.88 (1) | 3.595 (1) | 126 (1) |
C20—H20B···CgBii | 0.959 (14) | 2.84 (1) | 3.613 (1) | 140 (1) |
C20A—H20D···CgBii | 0.99 | 2.81 | 3.792 (1) | 170 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C24H36N2O2S |
Mr | 416.62 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 93 |
a, b, c (Å) | 10.3564 (3), 13.5117 (4), 16.2076 (4) |
β (°) | 95.814 (1) |
V (Å3) | 2256.30 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.17 |
Crystal size (mm) | 0.54 × 0.42 × 0.29 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD diffractometer |
Absorption correction | Multi scan (SADABS; Sheldrick, 2002) |
Tmin, Tmax | 0.826, 0.954 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 71103, 14866, 10604 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.924 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.120, 1.02 |
No. of reflections | 14866 |
No. of parameters | 469 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.46, −0.26 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.835 (12) | 2.28 (1) | 3.065 (1) | 154 (1) |
C4—H4···O1 | 0.95 | 2.34 | 3.026 (1) | 128 |
C20—H20A···CgAii | 1.031 (12) | 2.88 (1) | 3.595 (1) | 126 (1) |
C20—H20B···CgBii | 0.959 (14) | 2.84 (1) | 3.613 (1) | 140 (1) |
C20A—H20D···CgBii | 0.99 | 2.81 | 3.792 (1) | 170 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x+1, y, z. |
The title compound (I) was prepared as part of our studies concerning fluorogenic receptor molecules with possible analytical applications (Weber et al., 2004; Schönefeld et al., 2005; Gruber et al., 2008).
The molecular geometry of the molecule (figure 1) is best described by an angular conformation, whereas the cyclododecyl ring is disordered over two positions giving rise to an entirely filled cavity. The torsion angle are 71.44 (6)° (C6—S1—N2—C13) and 51.5 (3)° (C6—S1—N2—C13A), respectively, while the mean planes of the cyclododecylamine and the naphthalene include an angle of 20.1°. Weak C—H···π contacts (Nishio, 2004) involving one methylene group of the cycloalkyl ring and the two aromatic rings, and a C—H···O interaction between H4 and O1 stabilize the crystal packing. Furthermore, N—H···O hydrogen bonding leads to dimerization similar to carboxylic acids. The equatorial arrangement and conformation of the cyclododecyl moiety correspond to reported data (Dunitz & Shearer, 1960; Rudert et al., 1994; Feiler et al., 1995).