Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810049536/xu5097sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536810049536/xu5097Isup2.hkl |
CCDC reference: 803331
Key indicators
- Single-crystal X-ray study
- T = 291 K
- Mean (C-C) = 0.004 Å
- R factor = 0.039
- wR factor = 0.112
- Data-to-parameter ratio = 14.1
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.98 PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 1 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.597 44 PLAT913_ALERT_3_C Missing # of Very Strong Reflections in FCF .... 4 PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 1 C13 H9 Br N2
Alert level G PLAT371_ALERT_2_G Long C(sp2)-C(sp1) Bond C11 - C12 ... 1.44 Ang. PLAT371_ALERT_2_G Long C(sp2)-C(sp1) Bond C11 - C13 ... 1.44 Ang. PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 1 C9 -C11 -C13 -N1 13.00 0.00 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 2 C12 -C11 -C13 -N1 5.00 0.00 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 17 C9 -C11 -C12 -N2 -6.00 10.00 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_G Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 18 C13 -C11 -C12 -N2 175.00 10.00 1.555 1.555 1.555 1.555
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 5 ALERT level C = Check and explain 6 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 4 ALERT type 3 Indicator that the structure quality may be low 5 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
2-(Propan-2-ylidene)malononitrile (0.212 g, 2 mmol) and 2-bromobenzaldehyde (0.366 g, 2 mmol) were dissolved in 2-propanol (2 ml). To the solution was added piperidine (0.017 g, 0.2 mmol), the solution was stirred for 24 h at 343 K. Then the reaction was cooled to room temperature, and the solution was filtered to obtain a yellow solid. Recrystallization from hot ethanol afforded the pure compound. Single crystals of (I) suitable for X-ray analysis were obtained by slow evaporation ethyl acetate solution.
H atoms were placed in calculated positions with C—H = 0.93–0.96 Å, and refined using a riding model with Uiso(H) = 1.5Ueq(C) for methyl H atoms and Uiso(H) = 1.2Ueq(C) for the others.
Malononitrile derivatives have broad application for the preparation of heterocyclic ring compounds. The chemistry of ylidene malononitrile have been studied extensively, From the ring closure reactions, the comounds containing newly formed five or six-membered rings, such as indans (Zhang et al., 2003), naphthalenes (Liu et al., 2002), benzenes (Sepiol et al., 1985) were obtained. Some crystal structures involving ylidene malononitrile groups have been published, including a recent report from our labratory Chen, et al., 2010). As a part of our interest in the synthsis of some complex ring systems, we investigated the title compound (I), which is a diene reagent in Diels-Alder reaction. We report herein the crystal structure of the title compound.
The molecular structure of (I) is shown in Fig. 1. Bond lengths and angles in (I) are normal. The molecule skeleton display an approximately planar structure except for the methyl group.
For the use of malononitrile-containing compounds as building blocks in syntheses, see: Liu et al. (2002); Sepiol & Milart (1985); Zhang et al. (2003). For a related structure, see: Chen & Kang (2010).
Data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell refinement: CrysAlis RED (Oxford Diffraction, 2008); data reduction: CrysAlis RED(Oxford Diffraction, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
Fig. 1. The molecular structure of (I) with 30% probability displacement ellipsoids (arbitrary spheres for H atoms). |
C13H9BrN2 | Z = 2 |
Mr = 273.13 | F(000) = 272 |
Triclinic, P1 | Dx = 1.540 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54184 Å |
a = 7.0353 (7) Å | Cell parameters from 3664 reflections |
b = 7.0765 (5) Å | θ = 6.8–71.9° |
c = 13.3229 (8) Å | µ = 4.52 mm−1 |
α = 82.192 (6)° | T = 291 K |
β = 76.628 (8)° | Block, yellow |
γ = 66.038 (9)° | 0.36 × 0.32 × 0.24 mm |
V = 589.03 (8) Å3 |
Oxford Diffraction Xcalibur Sapphire3 Gemini ultra diffractometer | 2062 independent reflections |
Radiation source: Enhance Ultra (Cu) X-ray Source | 1923 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.024 |
Detector resolution: 7.9575 pixels mm-1 | θmax = 67.0°, θmin = 6.8° |
ω scans | h = −8→6 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −8→8 |
Tmin = 0.293, Tmax = 0.410 | l = −15→15 |
4500 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0759P)2 + 0.0933P] where P = (Fo2 + 2Fc2)/3 |
2062 reflections | (Δ/σ)max < 0.001 |
146 parameters | Δρmax = 0.59 e Å−3 |
0 restraints | Δρmin = −0.55 e Å−3 |
C13H9BrN2 | γ = 66.038 (9)° |
Mr = 273.13 | V = 589.03 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.0353 (7) Å | Cu Kα radiation |
b = 7.0765 (5) Å | µ = 4.52 mm−1 |
c = 13.3229 (8) Å | T = 291 K |
α = 82.192 (6)° | 0.36 × 0.32 × 0.24 mm |
β = 76.628 (8)° |
Oxford Diffraction Xcalibur Sapphire3 Gemini ultra diffractometer | 2062 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 1923 reflections with I > 2σ(I) |
Tmin = 0.293, Tmax = 0.410 | Rint = 0.024 |
4500 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.59 e Å−3 |
2062 reflections | Δρmin = −0.55 e Å−3 |
146 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.67339 (5) | 0.15902 (4) | 0.54256 (2) | 0.06643 (19) | |
C8 | 0.8775 (4) | −0.3609 (4) | 0.7789 (2) | 0.0493 (6) | |
H8 | 0.8557 | −0.3515 | 0.8499 | 0.059* | |
N2 | 1.2571 (5) | −1.0939 (4) | 0.7188 (2) | 0.0735 (8) | |
C11 | 1.0519 (4) | −0.7373 (4) | 0.7984 (2) | 0.0455 (5) | |
C4 | 0.5298 (5) | 0.2647 (5) | 0.8955 (2) | 0.0598 (7) | |
H4 | 0.4994 | 0.2887 | 0.9655 | 0.072* | |
C13 | 1.0087 (4) | −0.7342 (4) | 0.9092 (2) | 0.0527 (6) | |
C5 | 0.6402 (5) | 0.0655 (4) | 0.8620 (2) | 0.0563 (6) | |
H5 | 0.6835 | −0.0433 | 0.9103 | 0.068* | |
C9 | 0.9905 (4) | −0.5636 (4) | 0.7362 (2) | 0.0461 (5) | |
C7 | 0.8037 (4) | −0.1879 (4) | 0.7217 (2) | 0.0516 (6) | |
H7 | 0.8277 | −0.2024 | 0.6510 | 0.062* | |
C2 | 0.5107 (4) | 0.3937 (4) | 0.7208 (3) | 0.0563 (7) | |
H2 | 0.4684 | 0.5041 | 0.6732 | 0.068* | |
C10 | 1.0389 (5) | −0.5797 (5) | 0.6211 (2) | 0.0584 (7) | |
H10A | 1.1160 | −0.7222 | 0.6044 | 0.088* | |
H10B | 1.1228 | −0.5013 | 0.5895 | 0.088* | |
H10C | 0.9087 | −0.5260 | 0.5958 | 0.088* | |
C6 | 0.6889 (4) | 0.0226 (4) | 0.7573 (2) | 0.0478 (6) | |
N1 | 0.9737 (5) | −0.7329 (5) | 0.9974 (2) | 0.0749 (8) | |
C3 | 0.4644 (4) | 0.4289 (4) | 0.8242 (3) | 0.0604 (7) | |
H3 | 0.3891 | 0.5629 | 0.8466 | 0.072* | |
C12 | 1.1667 (4) | −0.9376 (4) | 0.7555 (2) | 0.0532 (6) | |
C1 | 0.6206 (4) | 0.1936 (4) | 0.6873 (2) | 0.0496 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0880 (3) | 0.0444 (2) | 0.0549 (3) | −0.01383 (17) | −0.01666 (17) | 0.00310 (15) |
C8 | 0.0616 (14) | 0.0331 (13) | 0.0509 (14) | −0.0141 (11) | −0.0134 (11) | −0.0042 (10) |
N2 | 0.0868 (17) | 0.0364 (14) | 0.0813 (19) | −0.0086 (12) | −0.0094 (14) | −0.0120 (13) |
C11 | 0.0542 (12) | 0.0334 (12) | 0.0467 (13) | −0.0140 (10) | −0.0109 (10) | −0.0024 (10) |
C4 | 0.0712 (16) | 0.0478 (15) | 0.0555 (16) | −0.0208 (13) | −0.0032 (13) | −0.0105 (12) |
C13 | 0.0673 (15) | 0.0354 (13) | 0.0519 (17) | −0.0138 (11) | −0.0196 (12) | 0.0028 (11) |
C5 | 0.0706 (16) | 0.0384 (14) | 0.0559 (16) | −0.0179 (12) | −0.0128 (12) | 0.0009 (12) |
C9 | 0.0549 (12) | 0.0336 (12) | 0.0481 (14) | −0.0145 (10) | −0.0117 (10) | −0.0024 (10) |
C7 | 0.0654 (14) | 0.0336 (13) | 0.0522 (15) | −0.0145 (11) | −0.0141 (11) | −0.0015 (11) |
C2 | 0.0583 (14) | 0.0329 (13) | 0.0699 (19) | −0.0105 (11) | −0.0140 (13) | 0.0022 (12) |
C10 | 0.0780 (17) | 0.0425 (15) | 0.0469 (15) | −0.0169 (13) | −0.0093 (13) | −0.0031 (11) |
C6 | 0.0539 (13) | 0.0318 (12) | 0.0551 (15) | −0.0140 (10) | −0.0119 (11) | 0.0003 (10) |
N1 | 0.105 (2) | 0.0617 (17) | 0.0521 (17) | −0.0232 (15) | −0.0236 (14) | 0.0012 (12) |
C3 | 0.0602 (15) | 0.0371 (14) | 0.076 (2) | −0.0120 (11) | −0.0060 (13) | −0.0109 (13) |
C12 | 0.0629 (15) | 0.0354 (14) | 0.0566 (16) | −0.0150 (12) | −0.0122 (12) | 0.0011 (12) |
C1 | 0.0508 (12) | 0.0359 (13) | 0.0575 (15) | −0.0125 (10) | −0.0116 (11) | 0.0009 (11) |
Br1—C1 | 1.908 (3) | C5—H5 | 0.9300 |
C8—C7 | 1.327 (4) | C9—C10 | 1.502 (4) |
C8—C9 | 1.449 (4) | C7—C6 | 1.461 (4) |
C8—H8 | 0.9300 | C7—H7 | 0.9300 |
N2—C12 | 1.140 (4) | C2—C3 | 1.373 (5) |
C11—C9 | 1.358 (4) | C2—C1 | 1.387 (4) |
C11—C12 | 1.437 (4) | C2—H2 | 0.9300 |
C11—C13 | 1.438 (4) | C10—H10A | 0.9600 |
C4—C5 | 1.383 (4) | C10—H10B | 0.9600 |
C4—C3 | 1.390 (5) | C10—H10C | 0.9600 |
C4—H4 | 0.9300 | C6—C1 | 1.412 (4) |
C13—N1 | 1.144 (4) | C3—H3 | 0.9300 |
C5—C6 | 1.401 (4) | ||
C7—C8—C9 | 123.3 (3) | C3—C2—C1 | 120.0 (3) |
C7—C8—H8 | 118.4 | C3—C2—H2 | 120.0 |
C9—C8—H8 | 118.4 | C1—C2—H2 | 120.0 |
C9—C11—C12 | 120.8 (2) | C9—C10—H10A | 109.5 |
C9—C11—C13 | 123.1 (2) | C9—C10—H10B | 109.5 |
C12—C11—C13 | 116.1 (2) | H10A—C10—H10B | 109.5 |
C5—C4—C3 | 119.7 (3) | C9—C10—H10C | 109.5 |
C5—C4—H4 | 120.2 | H10A—C10—H10C | 109.5 |
C3—C4—H4 | 120.2 | H10B—C10—H10C | 109.5 |
N1—C13—C11 | 179.5 (3) | C5—C6—C1 | 116.6 (2) |
C4—C5—C6 | 121.9 (3) | C5—C6—C7 | 122.1 (2) |
C4—C5—H5 | 119.0 | C1—C6—C7 | 121.3 (3) |
C6—C5—H5 | 119.0 | C2—C3—C4 | 120.2 (3) |
C11—C9—C8 | 121.1 (2) | C2—C3—H3 | 119.9 |
C11—C9—C10 | 120.0 (2) | C4—C3—H3 | 119.9 |
C8—C9—C10 | 119.0 (2) | N2—C12—C11 | 178.1 (3) |
C8—C7—C6 | 127.4 (3) | C2—C1—C6 | 121.5 (3) |
C8—C7—H7 | 116.3 | C2—C1—Br1 | 117.1 (2) |
C6—C7—H7 | 116.3 | C6—C1—Br1 | 121.4 (2) |
C9—C11—C13—N1 | 131 (44) | C8—C7—C6—C5 | −0.8 (5) |
C12—C11—C13—N1 | −49 (45) | C8—C7—C6—C1 | 179.5 (3) |
C3—C4—C5—C6 | −0.1 (5) | C1—C2—C3—C4 | 0.9 (4) |
C12—C11—C9—C8 | −179.0 (2) | C5—C4—C3—C2 | −0.5 (5) |
C13—C11—C9—C8 | 0.7 (4) | C9—C11—C12—N2 | −6 (10) |
C12—C11—C9—C10 | 1.1 (4) | C13—C11—C12—N2 | 175 (10) |
C13—C11—C9—C10 | −179.1 (3) | C3—C2—C1—C6 | −0.6 (4) |
C7—C8—C9—C11 | −176.0 (3) | C3—C2—C1—Br1 | 178.9 (2) |
C7—C8—C9—C10 | 3.8 (4) | C5—C6—C1—C2 | 0.0 (4) |
C9—C8—C7—C6 | −179.9 (3) | C7—C6—C1—C2 | 179.7 (3) |
C4—C5—C6—C1 | 0.4 (4) | C5—C6—C1—Br1 | −179.5 (2) |
C4—C5—C6—C7 | −179.4 (3) | C7—C6—C1—Br1 | 0.2 (3) |
Experimental details
Crystal data | |
Chemical formula | C13H9BrN2 |
Mr | 273.13 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 291 |
a, b, c (Å) | 7.0353 (7), 7.0765 (5), 13.3229 (8) |
α, β, γ (°) | 82.192 (6), 76.628 (8), 66.038 (9) |
V (Å3) | 589.03 (8) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 4.52 |
Crystal size (mm) | 0.36 × 0.32 × 0.24 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Sapphire3 Gemini ultra |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.293, 0.410 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4500, 2062, 1923 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.597 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.112, 1.06 |
No. of reflections | 2062 |
No. of parameters | 146 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.59, −0.55 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2008), CrysAlis RED (Oxford Diffraction, 2008), CrysAlis RED(Oxford Diffraction, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997).
Malononitrile derivatives have broad application for the preparation of heterocyclic ring compounds. The chemistry of ylidene malononitrile have been studied extensively, From the ring closure reactions, the comounds containing newly formed five or six-membered rings, such as indans (Zhang et al., 2003), naphthalenes (Liu et al., 2002), benzenes (Sepiol et al., 1985) were obtained. Some crystal structures involving ylidene malononitrile groups have been published, including a recent report from our labratory Chen, et al., 2010). As a part of our interest in the synthsis of some complex ring systems, we investigated the title compound (I), which is a diene reagent in Diels-Alder reaction. We report herein the crystal structure of the title compound.
The molecular structure of (I) is shown in Fig. 1. Bond lengths and angles in (I) are normal. The molecule skeleton display an approximately planar structure except for the methyl group.