The crystal structure of new polymorph is reported in which an N—H
O hydrogen bond links molecules into chains with antiparallel (centrosymmetric) packing.
Supporting information
CCDC reference: 1916098
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.002 Å
- R factor = 0.040
- wR factor = 0.110
- Data-to-parameter ratio = 13.9
checkCIF/PLATON results
No syntax errors found
Datablock: I
Alert level C
PLAT420_ALERT_2_C D-H Without Acceptor N1 --H1A . Please Check
Alert level G
PLAT793_ALERT_4_G Model has Chirality at C7 (Centro SPGR) R Verify
PLAT802_ALERT_4_G CIF Input Record(s) with more than 80 Characters 2 Info
PLAT961_ALERT_5_G Dataset Contains no Negative Intensities ....... Please Check
PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 12 Info
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
1 ALERT level C = Check. Ensure it is not caused by an omission or oversight
4 ALERT level G = General information/check it is not something unexpected
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
2 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
1 ALERT type 5 Informative message, check
Data collection: SAINT (Bruker, 2004); cell refinement: APEX2 (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).
Crystal data top
C10H13NO | F(000) = 352 |
Mr = 163.21 | Dx = 1.227 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 8.575 (2) Å | Cell parameters from 3598 reflections |
b = 10.746 (3) Å | θ = 2.4–30.1° |
c = 9.798 (3) Å | µ = 0.08 mm−1 |
β = 101.811 (3)° | T = 100 K |
V = 883.8 (4) Å3 | Block, colourless |
Z = 4 | 0.15 × 0.1 × 0.1 mm |
Data collection top
Bruker APEXII CCD diffractometer | 1914 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.038 |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | θmax = 28.5°, θmin = 2.4° |
Tmin = 0.674, Tmax = 0.746 | h = −11→10 |
9961 measured reflections | k = −14→14 |
2240 independent reflections | l = −13→13 |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | All H-atom parameters refined |
wR(F2) = 0.110 | w = 1/[σ2(Fo2) + (0.0614P)2 + 0.1474P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
2240 reflections | Δρmax = 0.31 e Å−3 |
161 parameters | Δρmin = −0.27 e Å−3 |
0 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.32919 (9) | 0.23775 (7) | 0.06137 (7) | 0.0216 (2) | |
N1 | 0.27946 (11) | 0.17768 (8) | 0.26886 (9) | 0.0192 (2) | |
H1A | 0.2469 (17) | 0.1033 (15) | 0.2342 (15) | 0.031 (4)* | |
H1B | 0.2895 (17) | 0.1927 (14) | 0.3601 (15) | 0.028 (3)* | |
C1 | 0.68011 (12) | 0.34374 (9) | 0.20614 (10) | 0.0179 (2) | |
H1 | 0.6296 (16) | 0.3276 (12) | 0.1099 (14) | 0.021 (3)* | |
C2 | 0.84492 (13) | 0.33963 (10) | 0.24848 (11) | 0.0206 (2) | |
H2 | 0.9097 (17) | 0.3192 (13) | 0.1809 (14) | 0.027 (3)* | |
C3 | 0.91672 (13) | 0.36033 (10) | 0.38704 (11) | 0.0217 (2) | |
H3 | 1.0322 (19) | 0.3568 (14) | 0.4177 (15) | 0.035 (4)* | |
C4 | 0.82161 (13) | 0.38440 (10) | 0.48320 (11) | 0.0219 (2) | |
H4 | 0.8698 (17) | 0.3979 (13) | 0.5822 (15) | 0.027 (3)* | |
C5 | 0.65680 (13) | 0.38737 (9) | 0.44137 (10) | 0.0184 (2) | |
H5 | 0.5908 (15) | 0.4038 (12) | 0.5099 (13) | 0.017 (3)* | |
C6 | 0.58384 (12) | 0.36770 (8) | 0.30233 (10) | 0.0151 (2) | |
C7 | 0.40388 (12) | 0.37876 (9) | 0.25694 (10) | 0.0150 (2) | |
H7 | 0.3586 (15) | 0.3913 (12) | 0.3424 (13) | 0.019 (3)* | |
C8 | 0.35882 (12) | 0.49138 (9) | 0.16087 (11) | 0.0189 (2) | |
H8A | 0.4084 (18) | 0.5661 (13) | 0.2142 (15) | 0.030 (4)* | |
H8B | 0.4098 (16) | 0.4803 (12) | 0.0771 (14) | 0.024 (3)* | |
C9 | 0.18019 (13) | 0.50974 (11) | 0.11476 (12) | 0.0226 (2) | |
H9A | 0.1318 (18) | 0.4394 (14) | 0.0522 (15) | 0.033 (4)* | |
H9B | 0.1575 (19) | 0.5862 (15) | 0.0573 (16) | 0.039 (4)* | |
H9C | 0.1253 (18) | 0.5153 (14) | 0.1957 (16) | 0.034 (4)* | |
C10 | 0.33405 (11) | 0.25883 (9) | 0.18573 (10) | 0.0148 (2) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0261 (4) | 0.0250 (4) | 0.0141 (4) | −0.0021 (3) | 0.0046 (3) | −0.0035 (3) |
N1 | 0.0241 (5) | 0.0158 (4) | 0.0184 (4) | −0.0028 (3) | 0.0060 (3) | −0.0006 (3) |
C1 | 0.0198 (5) | 0.0181 (5) | 0.0155 (4) | −0.0020 (4) | 0.0026 (4) | −0.0003 (3) |
C2 | 0.0202 (5) | 0.0185 (5) | 0.0244 (5) | −0.0016 (4) | 0.0073 (4) | −0.0004 (4) |
C3 | 0.0168 (5) | 0.0182 (5) | 0.0279 (5) | −0.0025 (4) | −0.0004 (4) | 0.0011 (4) |
C4 | 0.0259 (6) | 0.0191 (5) | 0.0177 (5) | −0.0025 (4) | −0.0025 (4) | −0.0003 (4) |
C5 | 0.0227 (5) | 0.0160 (5) | 0.0162 (5) | −0.0006 (4) | 0.0034 (4) | −0.0003 (3) |
C6 | 0.0167 (5) | 0.0118 (4) | 0.0163 (4) | −0.0012 (3) | 0.0022 (3) | 0.0010 (3) |
C7 | 0.0163 (5) | 0.0159 (5) | 0.0129 (4) | −0.0007 (3) | 0.0035 (3) | −0.0002 (3) |
C8 | 0.0187 (5) | 0.0176 (5) | 0.0202 (5) | −0.0003 (4) | 0.0036 (4) | 0.0036 (4) |
C9 | 0.0196 (5) | 0.0231 (5) | 0.0244 (5) | 0.0031 (4) | 0.0028 (4) | 0.0036 (4) |
C10 | 0.0131 (4) | 0.0158 (4) | 0.0150 (4) | 0.0012 (3) | 0.0020 (3) | −0.0003 (3) |
Geometric parameters (Å, º) top
O1—C10 | 1.2316 (12) | C5—H5 | 0.979 (12) |
N1—H1A | 0.890 (16) | C5—C6 | 1.3940 (14) |
N1—H1B | 0.895 (15) | C6—C7 | 1.5206 (14) |
N1—C10 | 1.3414 (13) | C7—H7 | 1.002 (12) |
C1—H1 | 0.970 (13) | C7—C8 | 1.5333 (14) |
C1—C2 | 1.3898 (15) | C7—C10 | 1.5282 (13) |
C1—C6 | 1.3982 (14) | C8—H8A | 1.004 (14) |
C2—H2 | 0.973 (14) | C8—H8B | 1.013 (13) |
C2—C3 | 1.3891 (15) | C8—C9 | 1.5187 (15) |
C3—H3 | 0.975 (16) | C9—H9A | 1.007 (15) |
C3—C4 | 1.3909 (16) | C9—H9B | 0.992 (16) |
C4—H4 | 0.984 (14) | C9—H9C | 1.004 (15) |
C4—C5 | 1.3890 (15) | | |
| | | |
H1A—N1—H1B | 120.1 (13) | C6—C7—H7 | 108.0 (7) |
C10—N1—H1A | 118.2 (9) | C6—C7—C8 | 110.76 (8) |
C10—N1—H1B | 121.0 (9) | C6—C7—C10 | 110.30 (8) |
C2—C1—H1 | 120.6 (8) | C8—C7—H7 | 108.4 (7) |
C2—C1—C6 | 120.62 (9) | C10—C7—H7 | 108.2 (7) |
C6—C1—H1 | 118.8 (8) | C10—C7—C8 | 111.06 (8) |
C1—C2—H2 | 119.4 (8) | C7—C8—H8A | 106.5 (8) |
C3—C2—C1 | 120.46 (10) | C7—C8—H8B | 107.9 (8) |
C3—C2—H2 | 120.1 (8) | H8A—C8—H8B | 108.0 (11) |
C2—C3—H3 | 120.9 (9) | C9—C8—C7 | 113.41 (8) |
C2—C3—C4 | 119.20 (10) | C9—C8—H8A | 110.2 (8) |
C4—C3—H3 | 119.9 (9) | C9—C8—H8B | 110.5 (8) |
C3—C4—H4 | 120.6 (8) | C8—C9—H9A | 110.4 (8) |
C5—C4—C3 | 120.45 (9) | C8—C9—H9B | 110.2 (9) |
C5—C4—H4 | 119.0 (8) | C8—C9—H9C | 112.4 (9) |
C4—C5—H5 | 119.9 (7) | H9A—C9—H9B | 105.6 (12) |
C4—C5—C6 | 120.73 (9) | H9A—C9—H9C | 108.9 (12) |
C6—C5—H5 | 119.4 (7) | H9B—C9—H9C | 109.2 (12) |
C1—C6—C7 | 121.41 (9) | O1—C10—N1 | 122.40 (9) |
C5—C6—C1 | 118.55 (9) | O1—C10—C7 | 122.52 (9) |
C5—C6—C7 | 119.98 (9) | N1—C10—C7 | 115.07 (8) |
| | | |
C1—C2—C3—C4 | 0.44 (16) | C5—C6—C7—C8 | 112.46 (10) |
C1—C6—C7—C8 | −64.48 (12) | C5—C6—C7—C10 | −124.17 (9) |
C1—C6—C7—C10 | 58.89 (11) | C6—C1—C2—C3 | −0.55 (16) |
C2—C1—C6—C5 | 0.03 (15) | C6—C7—C8—C9 | −178.47 (8) |
C2—C1—C6—C7 | 177.01 (9) | C6—C7—C10—O1 | −83.85 (11) |
C2—C3—C4—C5 | 0.18 (15) | C6—C7—C10—N1 | 95.67 (10) |
C3—C4—C5—C6 | −0.70 (15) | C8—C7—C10—O1 | 39.34 (13) |
C4—C5—C6—C1 | 0.59 (15) | C8—C7—C10—N1 | −141.14 (9) |
C4—C5—C6—C7 | −176.43 (9) | C10—C7—C8—C9 | 58.60 (11) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1B···O1i | 0.895 (15) | 2.071 (15) | 2.9533 (13) | 168.4 (13) |
Symmetry code: (i) x, −y+1/2, z+1/2. |
Crystal lattice energies (kJ mol-1) for racemic 2-phenylbutyramide polymorphs
computed using AA-CLP software topPolymorph | Eelectrostatic | Epolarization | Edispersion | Eexchange-repulsion | Etotal | Crystal density (g cm-3) |
rac-1 | -35.6a | -27.6a | -100.4a | 55.0a | -108.6a | 1.160b |
rac-2 | -33.9 | -28.3 | -107.9 | 53.8 | -116.3 | 1.227 |
Notes:
afrom Krivoshein et al. (2018);
bfrom Khrustalev et al. (2014). |