The synthesis and crystal structures of 1,3-diethyl-5-{(2E,4E)-6-[(E)-1,3,3-trimethylindolin-2-ylidene]hexa-2,4-dien-1-ylidene}pyrimidine-2,4,6(1H,3H,5H)-trione or TMI, C25H29N3O3, and 1,3-diethyl-2-sulfanylidene-5-[2-(1,3,3-trimethylindolin-2-ylidene)ethylidene]dihydropyrimidine-4,6(1H,5H)-dione or DTB, C21H25N3O2S, are described. These compounds contain the same indole derivative donor group and differ in their acceptor groups (in TMI it contains oxygen in the para position, and in DTB sulfur) and the length of the π-bridge.
Supporting information
CCDC references: 1946233; 1946232
Key indicators
Structure: TMI
- Single-crystal X-ray study
- T = 100 K
- Mean
(C-C) = 0.002 Å
- R factor = 0.048
- wR factor = 0.117
- Data-to-parameter ratio = 24.7
Structure: DTB
- Single-crystal X-ray study
- T = 100 K
- Mean
(C-C) = 0.001 Å
- R factor = 0.046
- wR factor = 0.141
- Data-to-parameter ratio = 49.6
checkCIF/PLATON results
No syntax errors found
Datablock: TMI
Alert level C
PLAT480_ALERT_4_C Long H...A H-Bond Reported H3 ..O2 . 2.61 Ang.
Alert level G
PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 32 Note
PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 18 Info
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
1 ALERT level C = Check. Ensure it is not caused by an omission or oversight
2 ALERT level G = General information/check it is not something unexpected
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Datablock: DTB
Alert level C
PLAT480_ALERT_4_C Long H...A H-Bond Reported H21A ..S1 . 2.98 Ang.
PLAT905_ALERT_3_C Negative K value in the Analysis of Variance ... -0.962 Report
Alert level G
PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 24 Note
PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 15 Info
0 ALERT level A = Most likely a serious problem - resolve or explain
0 ALERT level B = A potentially serious problem, consider carefully
2 ALERT level C = Check. Ensure it is not caused by an omission or oversight
2 ALERT level G = General information/check it is not something unexpected
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
For both structures, data collection: APEX3 (Bruker, 2016); cell refinement: SAINT (Bruker, 2016); data reduction: SAINT (Bruker, 2016); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).
1,3-Diethyl-5-{(2
E,4
E)-6-[(
E)-1,3,3-trimethylindolin-2-ylidene]hexa-2,4-dien-1-ylidene}pyrimidine-2,4,6(1
H,3
H,5
H)-trione (TMI)
top
Crystal data top
C25H29N3O3 | F(000) = 896 |
Mr = 419.51 | Dx = 1.262 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 11.7624 (9) Å | Cell parameters from 8868 reflections |
b = 22.9546 (19) Å | θ = 2.5–28.2° |
c = 8.1934 (7) Å | µ = 0.08 mm−1 |
β = 93.717 (2)° | T = 100 K |
V = 2207.6 (3) Å3 | Plate, metallic light blue |
Z = 4 | 0.3 × 0.25 × 0.11 mm |
Data collection top
Bruker APEXII CCD diffractometer | 4810 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.085 |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | θmax = 31.1°, θmin = 1.7° |
Tmin = 0.601, Tmax = 0.746 | h = −16→17 |
69450 measured reflections | k = −33→33 |
7037 independent reflections | l = −11→11 |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.117 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0433P)2 + 0.7306P] where P = (Fo2 + 2Fc2)/3 |
7037 reflections | (Δ/σ)max < 0.001 |
285 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.57141 (8) | 0.28544 (4) | 0.06369 (11) | 0.0250 (2) | |
C14 | 0.45141 (11) | 0.39420 (5) | 0.74941 (16) | 0.0210 (3) | |
H14 | 0.486034 | 0.431317 | 0.765679 | 0.025* | |
O3 | 0.84399 (9) | 0.40063 (4) | −0.13659 (12) | 0.0300 (2) | |
O2 | 0.68018 (9) | 0.46420 (4) | 0.31743 (12) | 0.0314 (2) | |
N1 | 0.28095 (9) | 0.42110 (4) | 1.26866 (12) | 0.0195 (2) | |
N2 | 0.70066 (9) | 0.34541 (5) | −0.04349 (13) | 0.0203 (2) | |
N3 | 0.75975 (9) | 0.43289 (4) | 0.08893 (13) | 0.0201 (2) | |
C7 | 0.29334 (10) | 0.38885 (5) | 1.13030 (15) | 0.0172 (2) | |
C8 | 0.21355 (10) | 0.33601 (5) | 1.13327 (15) | 0.0174 (2) | |
C5 | 0.15411 (11) | 0.34692 (5) | 1.28882 (15) | 0.0187 (2) | |
C12 | 0.36413 (11) | 0.40500 (5) | 1.01155 (15) | 0.0196 (2) | |
H12 | 0.404050 | 0.440701 | 1.028219 | 0.023* | |
C4 | 0.19733 (11) | 0.39734 (5) | 1.36456 (15) | 0.0195 (2) | |
C13 | 0.38377 (11) | 0.37410 (5) | 0.86730 (15) | 0.0201 (2) | |
H13 | 0.348086 | 0.337243 | 0.850912 | 0.024* | |
C20 | 0.62694 (11) | 0.33057 (5) | 0.07785 (15) | 0.0195 (2) | |
C17 | 0.55933 (10) | 0.35433 (5) | 0.34446 (15) | 0.0201 (2) | |
H17 | 0.523420 | 0.317338 | 0.333554 | 0.024* | |
C21 | 0.77321 (11) | 0.39312 (6) | −0.03588 (15) | 0.0212 (3) | |
C15 | 0.47303 (11) | 0.36355 (6) | 0.60582 (16) | 0.0209 (3) | |
H15 | 0.439083 | 0.326297 | 0.589055 | 0.025* | |
C18 | 0.62303 (10) | 0.37085 (5) | 0.21547 (15) | 0.0188 (2) | |
C19 | 0.68610 (11) | 0.42537 (5) | 0.21503 (15) | 0.0206 (3) | |
C16 | 0.54072 (11) | 0.38470 (6) | 0.48855 (16) | 0.0214 (3) | |
H16 | 0.576385 | 0.421508 | 0.506047 | 0.026* | |
C22 | 0.83708 (11) | 0.48360 (5) | 0.09856 (16) | 0.0225 (3) | |
H22A | 0.797739 | 0.517098 | 0.146023 | 0.027* | |
H22B | 0.856797 | 0.494552 | −0.013005 | 0.027* | |
C9 | 0.12617 (11) | 0.33600 (6) | 0.98519 (15) | 0.0218 (3) | |
H9A | 0.069422 | 0.305443 | 0.999149 | 0.033* | |
H9B | 0.165282 | 0.328573 | 0.885221 | 0.033* | |
H9C | 0.088140 | 0.373965 | 0.976858 | 0.033* | |
C6 | 0.06730 (11) | 0.31656 (6) | 1.35644 (16) | 0.0229 (3) | |
H6 | 0.037084 | 0.282200 | 1.305626 | 0.028* | |
C3 | 0.15744 (12) | 0.41847 (6) | 1.50894 (16) | 0.0243 (3) | |
H3 | 0.188713 | 0.452496 | 1.560313 | 0.029* | |
C10 | 0.28018 (11) | 0.27818 (5) | 1.14518 (17) | 0.0230 (3) | |
H10A | 0.226542 | 0.245599 | 1.148562 | 0.034* | |
H10B | 0.330873 | 0.278119 | 1.244935 | 0.034* | |
H10C | 0.325495 | 0.274050 | 1.049600 | 0.034* | |
C24 | 0.70962 (12) | 0.30531 (6) | −0.18308 (15) | 0.0235 (3) | |
H24A | 0.730561 | 0.327686 | −0.279980 | 0.028* | |
H24B | 0.634697 | 0.286813 | −0.209861 | 0.028* | |
C2 | 0.06930 (12) | 0.38748 (6) | 1.57531 (16) | 0.0267 (3) | |
H2 | 0.039178 | 0.400960 | 1.673280 | 0.032* | |
C1 | 0.02468 (12) | 0.33723 (6) | 1.50078 (17) | 0.0272 (3) | |
H1 | −0.035165 | 0.316835 | 1.548404 | 0.033* | |
C11 | 0.34104 (12) | 0.47513 (6) | 1.30867 (17) | 0.0255 (3) | |
H11A | 0.331476 | 0.485237 | 1.423182 | 0.038* | |
H11B | 0.309903 | 0.506406 | 1.237660 | 0.038* | |
H11C | 0.422246 | 0.470163 | 1.292140 | 0.038* | |
C25 | 0.79828 (12) | 0.25841 (6) | −0.14451 (18) | 0.0289 (3) | |
H25A | 0.805058 | 0.233709 | −0.240946 | 0.043* | |
H25B | 0.775041 | 0.234562 | −0.053227 | 0.043* | |
H25C | 0.871977 | 0.276688 | −0.114467 | 0.043* | |
C23 | 0.94519 (12) | 0.47040 (6) | 0.20246 (19) | 0.0297 (3) | |
H23A | 0.994861 | 0.504712 | 0.206046 | 0.045* | |
H23B | 0.984717 | 0.437534 | 0.154931 | 0.045* | |
H23C | 0.925955 | 0.460408 | 0.313647 | 0.045* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0246 (5) | 0.0215 (5) | 0.0289 (5) | −0.0026 (4) | 0.0012 (4) | −0.0021 (4) |
C14 | 0.0197 (6) | 0.0193 (6) | 0.0243 (6) | −0.0012 (5) | 0.0032 (5) | 0.0022 (5) |
O3 | 0.0326 (6) | 0.0326 (5) | 0.0261 (5) | −0.0046 (4) | 0.0110 (4) | −0.0023 (4) |
O2 | 0.0397 (6) | 0.0235 (5) | 0.0325 (5) | −0.0086 (4) | 0.0153 (5) | −0.0079 (4) |
N1 | 0.0213 (5) | 0.0172 (5) | 0.0200 (5) | −0.0035 (4) | 0.0015 (4) | −0.0014 (4) |
N2 | 0.0204 (5) | 0.0212 (5) | 0.0193 (5) | 0.0011 (4) | 0.0011 (4) | −0.0016 (4) |
N3 | 0.0208 (5) | 0.0184 (5) | 0.0214 (5) | −0.0011 (4) | 0.0047 (4) | 0.0003 (4) |
C7 | 0.0171 (6) | 0.0148 (5) | 0.0193 (5) | 0.0003 (4) | −0.0010 (4) | 0.0008 (4) |
C8 | 0.0171 (6) | 0.0151 (5) | 0.0200 (5) | −0.0011 (4) | 0.0018 (4) | −0.0005 (4) |
C5 | 0.0190 (6) | 0.0182 (5) | 0.0186 (5) | 0.0007 (5) | −0.0001 (4) | 0.0017 (4) |
C12 | 0.0184 (6) | 0.0169 (5) | 0.0234 (6) | −0.0015 (5) | 0.0014 (5) | 0.0013 (5) |
C4 | 0.0197 (6) | 0.0202 (6) | 0.0183 (5) | −0.0003 (5) | −0.0006 (5) | 0.0019 (4) |
C13 | 0.0170 (6) | 0.0184 (6) | 0.0248 (6) | 0.0005 (5) | 0.0014 (5) | 0.0023 (5) |
C20 | 0.0170 (6) | 0.0204 (6) | 0.0210 (6) | 0.0037 (5) | 0.0001 (5) | 0.0014 (5) |
C17 | 0.0155 (6) | 0.0197 (6) | 0.0250 (6) | 0.0000 (5) | 0.0009 (5) | 0.0006 (5) |
C21 | 0.0210 (6) | 0.0222 (6) | 0.0203 (6) | 0.0019 (5) | 0.0012 (5) | 0.0006 (5) |
C15 | 0.0174 (6) | 0.0199 (6) | 0.0256 (6) | −0.0002 (5) | 0.0025 (5) | 0.0021 (5) |
C18 | 0.0167 (6) | 0.0185 (6) | 0.0211 (6) | 0.0008 (4) | 0.0011 (4) | 0.0001 (5) |
C19 | 0.0202 (6) | 0.0202 (6) | 0.0217 (6) | 0.0014 (5) | 0.0033 (5) | 0.0009 (5) |
C16 | 0.0181 (6) | 0.0212 (6) | 0.0250 (6) | −0.0006 (5) | 0.0024 (5) | 0.0011 (5) |
C22 | 0.0247 (7) | 0.0182 (6) | 0.0253 (6) | −0.0026 (5) | 0.0060 (5) | 0.0020 (5) |
C9 | 0.0205 (6) | 0.0243 (6) | 0.0204 (6) | −0.0008 (5) | −0.0006 (5) | −0.0031 (5) |
C6 | 0.0234 (7) | 0.0216 (6) | 0.0239 (6) | −0.0028 (5) | 0.0025 (5) | 0.0013 (5) |
C3 | 0.0287 (7) | 0.0246 (6) | 0.0194 (6) | −0.0008 (5) | −0.0007 (5) | −0.0015 (5) |
C10 | 0.0223 (6) | 0.0166 (6) | 0.0302 (7) | 0.0004 (5) | 0.0036 (5) | 0.0015 (5) |
C24 | 0.0254 (7) | 0.0263 (6) | 0.0187 (6) | 0.0022 (5) | −0.0001 (5) | −0.0041 (5) |
C2 | 0.0313 (7) | 0.0303 (7) | 0.0190 (6) | 0.0013 (6) | 0.0044 (5) | 0.0014 (5) |
C1 | 0.0269 (7) | 0.0307 (7) | 0.0245 (6) | −0.0037 (6) | 0.0060 (5) | 0.0041 (5) |
C11 | 0.0294 (7) | 0.0184 (6) | 0.0283 (7) | −0.0063 (5) | −0.0013 (6) | −0.0032 (5) |
C25 | 0.0254 (7) | 0.0301 (7) | 0.0308 (7) | 0.0060 (6) | −0.0025 (6) | −0.0096 (6) |
C23 | 0.0219 (7) | 0.0270 (7) | 0.0402 (8) | −0.0001 (5) | 0.0020 (6) | −0.0045 (6) |
Geometric parameters (Å, º) top
O1—C20 | 1.2261 (15) | C15—C16 | 1.3756 (18) |
C14—H14 | 0.9500 | C18—C19 | 1.4550 (17) |
C14—C13 | 1.3706 (18) | C16—H16 | 0.9500 |
C14—C15 | 1.4080 (18) | C22—H22A | 0.9900 |
O3—C21 | 1.2218 (16) | C22—H22B | 0.9900 |
O2—C19 | 1.2291 (15) | C22—C23 | 1.5144 (19) |
N1—C7 | 1.3696 (15) | C9—H9A | 0.9800 |
N1—C4 | 1.4080 (16) | C9—H9B | 0.9800 |
N1—C11 | 1.4544 (16) | C9—H9C | 0.9800 |
N2—C20 | 1.4029 (16) | C6—H6 | 0.9500 |
N2—C21 | 1.3873 (16) | C6—C1 | 1.3971 (19) |
N2—C24 | 1.4772 (16) | C3—H3 | 0.9500 |
N3—C21 | 1.3876 (16) | C3—C2 | 1.3964 (19) |
N3—C19 | 1.4014 (16) | C10—H10A | 0.9800 |
N3—C22 | 1.4760 (16) | C10—H10B | 0.9800 |
C7—C8 | 1.5347 (16) | C10—H10C | 0.9800 |
C7—C12 | 1.3721 (17) | C24—H24A | 0.9900 |
C8—C5 | 1.5137 (17) | C24—H24B | 0.9900 |
C8—C9 | 1.5385 (17) | C24—C25 | 1.5177 (19) |
C8—C10 | 1.5414 (17) | C2—H2 | 0.9500 |
C5—C4 | 1.3936 (17) | C2—C1 | 1.392 (2) |
C5—C6 | 1.3816 (18) | C1—H1 | 0.9500 |
C12—H12 | 0.9500 | C11—H11A | 0.9800 |
C12—C13 | 1.4102 (18) | C11—H11B | 0.9800 |
C4—C3 | 1.3881 (18) | C11—H11C | 0.9800 |
C13—H13 | 0.9500 | C25—H25A | 0.9800 |
C20—C18 | 1.4614 (17) | C25—H25B | 0.9800 |
C17—H17 | 0.9500 | C25—H25C | 0.9800 |
C17—C18 | 1.3874 (17) | C23—H23A | 0.9800 |
C17—C16 | 1.4004 (18) | C23—H23B | 0.9800 |
C15—H15 | 0.9500 | C23—H23C | 0.9800 |
| | | |
C13—C14—H14 | 117.8 | N3—C22—H22A | 109.4 |
C13—C14—C15 | 124.41 (12) | N3—C22—H22B | 109.4 |
C15—C14—H14 | 117.8 | N3—C22—C23 | 111.37 (11) |
C7—N1—C4 | 111.60 (10) | H22A—C22—H22B | 108.0 |
C7—N1—C11 | 124.84 (11) | C23—C22—H22A | 109.4 |
C4—N1—C11 | 123.46 (11) | C23—C22—H22B | 109.4 |
C20—N2—C24 | 118.41 (10) | C8—C9—H9A | 109.5 |
C21—N2—C20 | 124.51 (11) | C8—C9—H9B | 109.5 |
C21—N2—C24 | 116.88 (11) | C8—C9—H9C | 109.5 |
C21—N3—C19 | 124.60 (11) | H9A—C9—H9B | 109.5 |
C21—N3—C22 | 117.31 (10) | H9A—C9—H9C | 109.5 |
C19—N3—C22 | 117.77 (10) | H9B—C9—H9C | 109.5 |
N1—C7—C8 | 108.43 (10) | C5—C6—H6 | 120.6 |
N1—C7—C12 | 122.88 (11) | C5—C6—C1 | 118.90 (12) |
C12—C7—C8 | 128.65 (11) | C1—C6—H6 | 120.6 |
C7—C8—C9 | 111.44 (10) | C4—C3—H3 | 121.5 |
C7—C8—C10 | 111.88 (10) | C4—C3—C2 | 117.03 (12) |
C5—C8—C7 | 101.47 (9) | C2—C3—H3 | 121.5 |
C5—C8—C9 | 110.04 (10) | C8—C10—H10A | 109.5 |
C5—C8—C10 | 110.48 (10) | C8—C10—H10B | 109.5 |
C9—C8—C10 | 111.14 (10) | C8—C10—H10C | 109.5 |
C4—C5—C8 | 109.71 (11) | H10A—C10—H10B | 109.5 |
C6—C5—C8 | 130.38 (11) | H10A—C10—H10C | 109.5 |
C6—C5—C4 | 119.88 (12) | H10B—C10—H10C | 109.5 |
C7—C12—H12 | 116.6 | N2—C24—H24A | 109.4 |
C7—C12—C13 | 126.75 (12) | N2—C24—H24B | 109.4 |
C13—C12—H12 | 116.6 | N2—C24—C25 | 111.31 (10) |
C5—C4—N1 | 108.73 (11) | H24A—C24—H24B | 108.0 |
C3—C4—N1 | 128.85 (12) | C25—C24—H24A | 109.4 |
C3—C4—C5 | 122.41 (12) | C25—C24—H24B | 109.4 |
C14—C13—C12 | 123.73 (12) | C3—C2—H2 | 119.3 |
C14—C13—H13 | 118.1 | C1—C2—C3 | 121.31 (13) |
C12—C13—H13 | 118.1 | C1—C2—H2 | 119.3 |
O1—C20—N2 | 119.21 (11) | C6—C1—H1 | 119.8 |
O1—C20—C18 | 124.36 (12) | C2—C1—C6 | 120.47 (13) |
N2—C20—C18 | 116.42 (11) | C2—C1—H1 | 119.8 |
C18—C17—H17 | 115.6 | N1—C11—H11A | 109.5 |
C18—C17—C16 | 128.88 (12) | N1—C11—H11B | 109.5 |
C16—C17—H17 | 115.6 | N1—C11—H11C | 109.5 |
O3—C21—N2 | 121.68 (12) | H11A—C11—H11B | 109.5 |
O3—C21—N3 | 121.35 (12) | H11A—C11—H11C | 109.5 |
N2—C21—N3 | 116.95 (11) | H11B—C11—H11C | 109.5 |
C14—C15—H15 | 118.3 | C24—C25—H25A | 109.5 |
C16—C15—C14 | 123.46 (12) | C24—C25—H25B | 109.5 |
C16—C15—H15 | 118.3 | C24—C25—H25C | 109.5 |
C17—C18—C20 | 117.41 (11) | H25A—C25—H25B | 109.5 |
C17—C18—C19 | 122.52 (11) | H25A—C25—H25C | 109.5 |
C19—C18—C20 | 120.05 (11) | H25B—C25—H25C | 109.5 |
O2—C19—N3 | 118.62 (12) | C22—C23—H23A | 109.5 |
O2—C19—C18 | 124.79 (12) | C22—C23—H23B | 109.5 |
N3—C19—C18 | 116.58 (11) | C22—C23—H23C | 109.5 |
C17—C16—H16 | 118.6 | H23A—C23—H23B | 109.5 |
C15—C16—C17 | 122.84 (12) | H23A—C23—H23C | 109.5 |
C15—C16—H16 | 118.6 | H23B—C23—H23C | 109.5 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···O2i | 0.95 | 2.61 | 3.5458 (17) | 167 |
C24—H24B···O1ii | 0.99 | 2.56 | 3.2939 (16) | 131 |
C11—H11A···O2i | 0.98 | 2.43 | 3.3891 (17) | 165 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x, −y+1/2, z−1/2. |
1,3-Diethyl-2-sulfanylidene-5-[2-(1,3,3-trimethylindolin-2-ylidene)ethylidene]dihydropyrimidine-4,6(1
H,5
H)-dione (DTB)
top
Crystal data top
C21H25N3O2S | F(000) = 816 |
Mr = 383.50 | Dx = 1.311 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 16.1504 (6) Å | Cell parameters from 9983 reflections |
b = 8.1264 (3) Å | θ = 2.6–37.3° |
c = 15.6487 (6) Å | µ = 0.19 mm−1 |
β = 108.849 (1)° | T = 100 K |
V = 1943.67 (13) Å3 | Block, clear light red |
Z = 4 | 0.3 × 0.26 × 0.24 mm |
Data collection top
Bruker APEXII CCD diffractometer | 8903 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.045 |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | θmax = 40.4°, θmin = 1.3° |
Tmin = 0.678, Tmax = 0.748 | h = −29→29 |
92854 measured reflections | k = −14→14 |
12354 independent reflections | l = −28→28 |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0645P)2 + 0.5305P] where P = (Fo2 + 2Fc2)/3 |
12354 reflections | (Δ/σ)max = 0.002 |
249 parameters | Δρmax = 0.64 e Å−3 |
0 restraints | Δρmin = −0.46 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.96141 (2) | 0.35712 (4) | 0.80259 (2) | 0.03286 (7) | |
O1 | 0.66676 (4) | 0.20400 (9) | 0.60288 (4) | 0.02461 (12) | |
N1 | 0.35986 (4) | 0.35270 (9) | 0.51788 (4) | 0.01788 (11) | |
O2 | 0.69412 (5) | 0.64835 (10) | 0.80519 (6) | 0.0389 (2) | |
N2 | 0.80016 (4) | 0.28754 (10) | 0.69633 (4) | 0.02129 (12) | |
N3 | 0.81446 (5) | 0.51652 (10) | 0.79244 (5) | 0.02353 (13) | |
C7 | 0.38323 (5) | 0.56295 (9) | 0.62627 (5) | 0.01636 (11) | |
C5 | 0.27705 (5) | 0.42249 (10) | 0.50767 (5) | 0.01701 (11) | |
C8 | 0.42390 (5) | 0.42923 (10) | 0.58292 (5) | 0.01659 (11) | |
C4 | 0.28730 (5) | 0.54688 (9) | 0.57129 (5) | 0.01715 (11) | |
C12 | 0.51201 (5) | 0.38347 (10) | 0.60429 (5) | 0.01905 (12) | |
H12 | 0.526462 | 0.294068 | 0.572630 | 0.023* | |
C14 | 0.66935 (5) | 0.43462 (10) | 0.69647 (5) | 0.01941 (12) | |
C13 | 0.57882 (5) | 0.46339 (10) | 0.66971 (5) | 0.01924 (12) | |
H13 | 0.560884 | 0.549633 | 0.700776 | 0.023* | |
C16 | 0.70815 (5) | 0.30405 (11) | 0.66025 (5) | 0.01949 (13) | |
C10 | 0.41564 (5) | 0.73819 (10) | 0.61661 (5) | 0.01950 (12) | |
H10A | 0.477565 | 0.747867 | 0.652692 | 0.029* | |
H10B | 0.381410 | 0.818280 | 0.637982 | 0.029* | |
H10C | 0.408539 | 0.759843 | 0.553031 | 0.029* | |
C3 | 0.21469 (5) | 0.63327 (11) | 0.57521 (6) | 0.02240 (14) | |
H3 | 0.220551 | 0.718222 | 0.618475 | 0.027* | |
C6 | 0.19664 (5) | 0.38216 (11) | 0.44549 (5) | 0.02134 (13) | |
H6 | 0.191296 | 0.298193 | 0.401796 | 0.026* | |
C11 | 0.39728 (5) | 0.52071 (11) | 0.72630 (5) | 0.02033 (13) | |
H11A | 0.377983 | 0.407614 | 0.730697 | 0.030* | |
H11B | 0.363251 | 0.596715 | 0.750444 | 0.030* | |
H11C | 0.459504 | 0.531035 | 0.761164 | 0.030* | |
C1 | 0.12383 (5) | 0.47033 (12) | 0.44987 (6) | 0.02465 (15) | |
H1 | 0.067688 | 0.446104 | 0.408353 | 0.030* | |
C15 | 0.72309 (5) | 0.54097 (11) | 0.76693 (6) | 0.02409 (15) | |
C9 | 0.37009 (6) | 0.20956 (12) | 0.46596 (6) | 0.02593 (16) | |
H9A | 0.345701 | 0.112329 | 0.486189 | 0.039* | |
H9B | 0.432365 | 0.191579 | 0.475090 | 0.039* | |
H9C | 0.339086 | 0.228611 | 0.401702 | 0.039* | |
C2 | 0.13236 (5) | 0.59308 (12) | 0.51416 (7) | 0.02590 (16) | |
H2 | 0.081895 | 0.650225 | 0.516706 | 0.031* | |
C17 | 0.85370 (5) | 0.38883 (12) | 0.76148 (5) | 0.02227 (14) | |
C18 | 0.83775 (5) | 0.14263 (14) | 0.66450 (6) | 0.02812 (18) | |
H18B | 0.898124 | 0.168077 | 0.665894 | 0.034* | |
H18A | 0.802474 | 0.117384 | 0.601326 | 0.034* | |
C19 | 0.83898 (6) | −0.00613 (13) | 0.72371 (7) | 0.02925 (18) | |
H19B | 0.865022 | −0.099926 | 0.702348 | 0.044* | |
H19C | 0.779012 | −0.033514 | 0.720698 | 0.044* | |
H19A | 0.873715 | 0.019095 | 0.786277 | 0.044* | |
C20 | 0.86824 (6) | 0.62716 (12) | 0.86467 (8) | 0.0319 (2) | |
H20A | 0.839194 | 0.735725 | 0.859387 | 0.038* | |
H20B | 0.926070 | 0.643783 | 0.856798 | 0.038* | |
C21 | 0.88084 (7) | 0.55668 (14) | 0.95736 (7) | 0.0341 (2) | |
H21A | 0.909420 | 0.449030 | 0.962662 | 0.051* | |
H21B | 0.823795 | 0.544084 | 0.966166 | 0.051* | |
H21C | 0.917496 | 0.631204 | 1.003387 | 0.051* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.01270 (8) | 0.04879 (16) | 0.03404 (12) | −0.00224 (8) | 0.00332 (7) | −0.00092 (10) |
O1 | 0.0176 (2) | 0.0376 (4) | 0.0168 (2) | 0.0010 (2) | 0.00299 (18) | −0.0047 (2) |
N1 | 0.0150 (2) | 0.0200 (3) | 0.0174 (2) | −0.0009 (2) | 0.00355 (18) | −0.00432 (19) |
O2 | 0.0243 (3) | 0.0270 (3) | 0.0515 (5) | 0.0064 (3) | −0.0069 (3) | −0.0139 (3) |
N2 | 0.0135 (2) | 0.0331 (4) | 0.0167 (2) | −0.0002 (2) | 0.00410 (18) | 0.0020 (2) |
N3 | 0.0161 (3) | 0.0216 (3) | 0.0269 (3) | −0.0032 (2) | −0.0013 (2) | 0.0042 (2) |
C7 | 0.0150 (2) | 0.0183 (3) | 0.0143 (2) | −0.0008 (2) | 0.00274 (19) | −0.0018 (2) |
C5 | 0.0142 (2) | 0.0190 (3) | 0.0167 (2) | −0.0017 (2) | 0.00338 (19) | −0.0013 (2) |
C8 | 0.0144 (2) | 0.0196 (3) | 0.0145 (2) | −0.0008 (2) | 0.00288 (19) | −0.0009 (2) |
C4 | 0.0147 (2) | 0.0187 (3) | 0.0169 (3) | −0.0005 (2) | 0.00356 (19) | −0.0012 (2) |
C12 | 0.0141 (3) | 0.0240 (3) | 0.0176 (3) | 0.0006 (2) | 0.0031 (2) | 0.0000 (2) |
C14 | 0.0143 (3) | 0.0221 (3) | 0.0186 (3) | −0.0005 (2) | 0.0009 (2) | 0.0033 (2) |
C13 | 0.0152 (3) | 0.0216 (3) | 0.0185 (3) | 0.0005 (2) | 0.0020 (2) | 0.0021 (2) |
C16 | 0.0141 (2) | 0.0290 (4) | 0.0146 (2) | −0.0001 (2) | 0.00368 (19) | 0.0033 (2) |
C10 | 0.0197 (3) | 0.0189 (3) | 0.0181 (3) | −0.0024 (2) | 0.0035 (2) | −0.0010 (2) |
C3 | 0.0179 (3) | 0.0238 (3) | 0.0248 (3) | 0.0023 (3) | 0.0059 (2) | −0.0021 (3) |
C6 | 0.0165 (3) | 0.0234 (3) | 0.0209 (3) | −0.0043 (2) | 0.0016 (2) | −0.0020 (2) |
C11 | 0.0228 (3) | 0.0225 (3) | 0.0153 (3) | −0.0004 (3) | 0.0056 (2) | −0.0004 (2) |
C1 | 0.0149 (3) | 0.0276 (4) | 0.0277 (4) | −0.0029 (3) | 0.0016 (2) | 0.0017 (3) |
C15 | 0.0176 (3) | 0.0191 (3) | 0.0286 (4) | 0.0006 (2) | −0.0023 (2) | 0.0022 (3) |
C9 | 0.0231 (3) | 0.0254 (4) | 0.0280 (4) | −0.0003 (3) | 0.0065 (3) | −0.0112 (3) |
C2 | 0.0158 (3) | 0.0275 (4) | 0.0327 (4) | 0.0022 (3) | 0.0054 (3) | 0.0008 (3) |
C17 | 0.0144 (3) | 0.0302 (4) | 0.0207 (3) | −0.0028 (3) | 0.0037 (2) | 0.0056 (3) |
C18 | 0.0166 (3) | 0.0485 (6) | 0.0202 (3) | 0.0036 (3) | 0.0072 (2) | −0.0065 (3) |
C19 | 0.0206 (3) | 0.0327 (4) | 0.0337 (4) | 0.0031 (3) | 0.0078 (3) | −0.0107 (3) |
C20 | 0.0221 (4) | 0.0202 (4) | 0.0415 (5) | −0.0045 (3) | −0.0061 (3) | −0.0001 (3) |
C21 | 0.0306 (4) | 0.0283 (4) | 0.0324 (4) | 0.0041 (3) | −0.0048 (3) | −0.0082 (3) |
Geometric parameters (Å, º) top
S1—C17 | 1.6683 (8) | C10—H10B | 0.9800 |
O1—C16 | 1.2354 (10) | C10—H10C | 0.9800 |
N1—C5 | 1.4135 (10) | C3—H3 | 0.9500 |
N1—C8 | 1.3462 (9) | C3—C2 | 1.4024 (12) |
N1—C9 | 1.4585 (11) | C6—H6 | 0.9500 |
O2—C15 | 1.2329 (12) | C6—C1 | 1.3974 (12) |
N2—C16 | 1.4152 (10) | C11—H11A | 0.9800 |
N2—C17 | 1.3766 (11) | C11—H11B | 0.9800 |
N2—C18 | 1.4829 (12) | C11—H11C | 0.9800 |
N3—C15 | 1.4128 (11) | C1—H1 | 0.9500 |
N3—C17 | 1.3825 (13) | C1—C2 | 1.3915 (14) |
N3—C20 | 1.4852 (12) | C9—H9A | 0.9800 |
C7—C8 | 1.5362 (10) | C9—H9B | 0.9800 |
C7—C4 | 1.5154 (10) | C9—H9C | 0.9800 |
C7—C10 | 1.5414 (11) | C2—H2 | 0.9500 |
C7—C11 | 1.5460 (10) | C18—H18B | 0.9900 |
C5—C4 | 1.3907 (10) | C18—H18A | 0.9900 |
C5—C6 | 1.3871 (10) | C18—C19 | 1.5194 (16) |
C8—C12 | 1.4027 (10) | C19—H19B | 0.9800 |
C4—C3 | 1.3850 (11) | C19—H19C | 0.9800 |
C12—H12 | 0.9500 | C19—H19A | 0.9800 |
C12—C13 | 1.3858 (11) | C20—H20A | 0.9900 |
C14—C13 | 1.4043 (10) | C20—H20B | 0.9900 |
C14—C16 | 1.4384 (12) | C20—C21 | 1.5109 (17) |
C14—C15 | 1.4483 (12) | C21—H21A | 0.9800 |
C13—H13 | 0.9500 | C21—H21B | 0.9800 |
C10—H10A | 0.9800 | C21—H21C | 0.9800 |
| | | |
C5—N1—C9 | 122.03 (6) | C7—C11—H11A | 109.5 |
C8—N1—C5 | 111.58 (6) | C7—C11—H11B | 109.5 |
C8—N1—C9 | 126.30 (7) | C7—C11—H11C | 109.5 |
C16—N2—C18 | 115.62 (7) | H11A—C11—H11B | 109.5 |
C17—N2—C16 | 124.48 (7) | H11A—C11—H11C | 109.5 |
C17—N2—C18 | 119.75 (7) | H11B—C11—H11C | 109.5 |
C15—N3—C20 | 115.50 (8) | C6—C1—H1 | 119.5 |
C17—N3—C15 | 124.17 (7) | C2—C1—C6 | 120.98 (7) |
C17—N3—C20 | 119.97 (7) | C2—C1—H1 | 119.5 |
C8—C7—C10 | 113.77 (6) | O2—C15—N3 | 119.20 (8) |
C8—C7—C11 | 110.25 (6) | O2—C15—C14 | 124.33 (8) |
C4—C7—C8 | 101.13 (6) | N3—C15—C14 | 116.46 (8) |
C4—C7—C10 | 109.95 (6) | N1—C9—H9A | 109.5 |
C4—C7—C11 | 110.14 (6) | N1—C9—H9B | 109.5 |
C10—C7—C11 | 111.16 (6) | N1—C9—H9C | 109.5 |
C4—C5—N1 | 108.74 (6) | H9A—C9—H9B | 109.5 |
C6—C5—N1 | 128.44 (7) | H9A—C9—H9C | 109.5 |
C6—C5—C4 | 122.81 (7) | H9B—C9—H9C | 109.5 |
N1—C8—C7 | 109.09 (6) | C3—C2—H2 | 119.7 |
N1—C8—C12 | 122.01 (7) | C1—C2—C3 | 120.67 (8) |
C12—C8—C7 | 128.89 (6) | C1—C2—H2 | 119.7 |
C5—C4—C7 | 109.42 (6) | N2—C17—S1 | 121.36 (7) |
C3—C4—C7 | 131.01 (7) | N2—C17—N3 | 117.32 (7) |
C3—C4—C5 | 119.57 (7) | N3—C17—S1 | 121.31 (6) |
C8—C12—H12 | 118.7 | N2—C18—H18B | 109.5 |
C13—C12—C8 | 122.66 (7) | N2—C18—H18A | 109.5 |
C13—C12—H12 | 118.7 | N2—C18—C19 | 110.68 (7) |
C13—C14—C16 | 123.32 (7) | H18B—C18—H18A | 108.1 |
C13—C14—C15 | 115.97 (8) | C19—C18—H18B | 109.5 |
C16—C14—C15 | 120.66 (7) | C19—C18—H18A | 109.5 |
C12—C13—C14 | 129.01 (8) | C18—C19—H19B | 109.5 |
C12—C13—H13 | 115.5 | C18—C19—H19C | 109.5 |
C14—C13—H13 | 115.5 | C18—C19—H19A | 109.5 |
O1—C16—N2 | 118.64 (8) | H19B—C19—H19C | 109.5 |
O1—C16—C14 | 124.72 (7) | H19B—C19—H19A | 109.5 |
N2—C16—C14 | 116.59 (7) | H19C—C19—H19A | 109.5 |
C7—C10—H10A | 109.5 | N3—C20—H20A | 109.3 |
C7—C10—H10B | 109.5 | N3—C20—H20B | 109.3 |
C7—C10—H10C | 109.5 | N3—C20—C21 | 111.43 (8) |
H10A—C10—H10B | 109.5 | H20A—C20—H20B | 108.0 |
H10A—C10—H10C | 109.5 | C21—C20—H20A | 109.3 |
H10B—C10—H10C | 109.5 | C21—C20—H20B | 109.3 |
C4—C3—H3 | 120.6 | C20—C21—H21A | 109.5 |
C4—C3—C2 | 118.80 (8) | C20—C21—H21B | 109.5 |
C2—C3—H3 | 120.6 | C20—C21—H21C | 109.5 |
C5—C6—H6 | 121.4 | H21A—C21—H21B | 109.5 |
C5—C6—C1 | 117.15 (8) | H21A—C21—H21C | 109.5 |
C1—C6—H6 | 121.4 | H21B—C21—H21C | 109.5 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12···O1 | 0.95 | 2.28 | 2.9000 (10) | 122 |
C19—H19B···S1i | 0.98 | 2.85 | 3.5573 (9) | 130 |
C21—H21A···S1 | 0.98 | 2.98 | 3.4965 (12) | 114 |
Symmetry code: (i) −x+2, y−1/2, −z+3/2. |