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In the crystal of the title compound, mol­ecules are linked to each other and solvent di­methyl­formamide mol­ecules by N—H...S, N—H...O, C—H...O and C—H...S hydrogen bonds, forming a three dimensional network.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2056989023007946/yz2041sup1.cif
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2056989023007946/yz2041Isup2.hkl
Contains datablock I

CCDC reference: 2294475

Key indicators

Structure: I
  • Single-crystal X-ray study
  • T = 100 K
  • Mean [sigma](C-C) = 0.004 Å
  • Disorder in main residue
  • R factor = 0.032
  • wR factor = 0.088
  • Data-to-parameter ratio = 8.8

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT089_ALERT_3_C Poor Data / Parameter Ratio (Zmax < 18) ........ 6.81 Note
Alert level G PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 22 Note PLAT003_ALERT_2_G Number of Uiso or Uij Restrained non-H Atoms ... 12 Report PLAT143_ALERT_4_G s.u. on c - Axis Small or Missing .............. 0.00010 Ang. PLAT175_ALERT_4_G The CIF-Embedded .res File Contains SAME Records 1 Report PLAT176_ALERT_4_G The CIF-Embedded .res File Contains SADI Records 1 Report PLAT177_ALERT_4_G The CIF-Embedded .res File Contains DELU Records 1 Report PLAT178_ALERT_4_G The CIF-Embedded .res File Contains SIMU Records 1 Report PLAT188_ALERT_3_G A Non-default SIMU Restraint Value has been used 0.0200 Report PLAT301_ALERT_3_G Main Residue Disorder ..............(Resd 1 ) 29% Note PLAT480_ALERT_4_G Long H...A H-Bond Reported H21B ..S9 . 2.98 Ang. PLAT850_ALERT_4_G Check Flack Parameter Exact Value 0.00 with s.u. 0.02 Check PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 377 Note PLAT883_ALERT_1_G No Info/Value for _atom_sites_solution_primary . Please Do ! PLAT899_ALERT_4_G SHELXL2018 is Deprecated and Succeeded by SHELXL 2019/3 Note PLAT912_ALERT_4_G Missing # of FCF Reflections Above STh/L= 0.600 16 Note PLAT915_ALERT_3_G No Flack x Check Done: Low Friedel Pair Coverage 29 % PLAT961_ALERT_5_G Dataset Contains no Negative Intensities ....... Please Check PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 2 Info
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 1 ALERT level C = Check. Ensure it is not caused by an omission or oversight 18 ALERT level G = General information/check it is not something unexpected 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 5 ALERT type 3 Indicator that the structure quality may be low 9 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check

Computing details top

Data collection: CrysAlis PRO 1.171.42.91a (Rigaku OD, 2023); cell refinement: CrysAlis PRO 1.171.42.91a (Rigaku OD, 2023); data reduction: CrysAlis PRO 1.171.42.91a (Rigaku OD, 2023); program(s) used to solve structure: SHELXT2019/1 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2019/1 (Sheldrick, 2015b); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2020).

\ (2Z,2'E)-2,2'-(3-Methoxy-3-phenylpropane-1,2-diylidene)\ bis(2-methylhydrazine-1-carbothioamide) dimethylformamide monosolvate top
Crystal data top
C12H16N6OS2·C3H7NOF(000) = 840
Mr = 397.52Dx = 1.295 Mg m3
Monoclinic, CcCu Kα radiation, λ = 1.54184 Å
a = 8.4573 (1) ÅCell parameters from 9940 reflections
b = 23.5853 (3) Åθ = 3.7–77.6°
c = 11.0072 (1) ŵ = 2.57 mm1
β = 111.749 (2)°T = 100 K
V = 2039.29 (5) Å3Plate, colourless
Z = 40.32 × 0.12 × 0.02 mm
Data collection top
XtaLAB Synergy, Dualflex, HyPix
diffractometer
2776 independent reflections
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source2751 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.030
ω scansθmax = 77.8°, θmin = 3.8°
Absorption correction: gaussian
(CrysAlisPro; Rigaku OD, 2023)
h = 1010
Tmin = 0.658, Tmax = 1.000k = 2929
11141 measured reflectionsl = 913
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.032 w = 1/[σ2(Fo2) + (0.0653P)2 + 0.7217P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.088(Δ/σ)max < 0.001
S = 1.07Δρmax = 0.30 e Å3
2776 reflectionsΔρmin = 0.27 e Å3
317 parametersAbsolute structure: Classical Flack method preferred over Parsons because s.u. lower
377 restraintsAbsolute structure parameter: 0.000 (16)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
S20.28482 (9)0.88049 (2)0.35678 (8)0.02715 (16)
S90.62361 (9)0.43859 (2)0.67836 (8)0.02788 (17)
O180.3029 (2)0.69867 (7)0.22627 (17)0.0208 (4)
N10.3182 (3)0.82853 (9)0.5810 (2)0.0250 (4)
H1A0.321 (5)0.7946 (11)0.623 (4)0.035 (10)*
H1B0.277 (5)0.8600 (14)0.609 (4)0.050 (12)*
N30.3551 (3)0.77463 (9)0.4201 (2)0.0193 (4)
H30.338 (4)0.7707 (16)0.335 (2)0.030 (9)*
N40.3832 (3)0.72789 (9)0.4985 (2)0.0194 (4)
N70.5105 (3)0.58678 (9)0.5112 (2)0.0206 (4)
N80.5322 (3)0.54302 (9)0.5966 (2)0.0237 (4)
H80.494 (4)0.5441 (15)0.660 (3)0.025 (8)*
N100.6502 (3)0.49254 (10)0.4741 (3)0.0304 (5)
H10A0.637 (4)0.5197 (13)0.412 (3)0.028 (8)*
H10B0.689 (5)0.4610 (13)0.447 (4)0.042 (10)*
C20.3196 (3)0.82596 (10)0.4617 (3)0.0196 (5)
C50.4275 (3)0.68202 (10)0.4549 (2)0.0178 (5)
C60.4552 (3)0.63348 (11)0.5415 (3)0.0211 (5)
H60.4328450.6361400.6197430.025*
C90.6017 (3)0.49391 (11)0.5749 (3)0.0245 (5)
C110.4518 (3)0.67600 (10)0.3245 (2)0.0180 (4)
H110.4628140.6349480.3063110.022*
C120.6115 (14)0.7087 (7)0.3235 (18)0.017 (2)0.57 (4)
C130.7717 (16)0.6857 (6)0.3961 (17)0.019 (2)0.57 (4)
H130.7810400.6504780.4400530.023*0.57 (4)
C140.9181 (14)0.7156 (8)0.4026 (14)0.025 (2)0.57 (4)
H141.0277770.7007270.4513500.030*0.57 (4)
C150.9025 (17)0.7670 (7)0.3378 (13)0.024 (2)0.57 (4)
H151.0016900.7876160.3439770.029*0.57 (4)
C160.7452 (17)0.7882 (6)0.2650 (14)0.0204 (19)0.57 (4)
H160.7363840.8225360.2178430.025*0.57 (4)
C170.5977 (16)0.7599 (7)0.2590 (16)0.0155 (19)0.57 (4)
H170.4889280.7756720.2112650.019*0.57 (4)
C12A0.618 (2)0.7024 (9)0.339 (2)0.017 (3)0.43 (4)
C13A0.771 (2)0.6743 (9)0.411 (2)0.022 (3)0.43 (4)
H13A0.7697800.6391610.4529010.026*0.43 (4)
C14A0.9259 (19)0.6998 (9)0.4195 (19)0.023 (2)0.43 (4)
H14A1.0303130.6813090.4673940.027*0.43 (4)
C15A0.9282 (19)0.7516 (9)0.3588 (17)0.020 (2)0.43 (4)
H15A1.0337080.7679840.3652630.025*0.43 (4)
C16A0.780 (2)0.7788 (8)0.290 (2)0.023 (3)0.43 (4)
H16A0.7813560.8146710.2515210.028*0.43 (4)
C17A0.625 (2)0.7534 (9)0.277 (2)0.021 (3)0.43 (4)
H17A0.5212000.7714770.2254990.025*0.43 (4)
C190.2808 (3)0.67848 (12)0.0984 (3)0.0257 (5)
H19A0.1913390.7005240.0327150.039*
H19B0.2480380.6383910.0910070.039*
H19C0.3877900.6826810.0840460.039*
O240.2984 (3)0.43619 (10)0.2226 (3)0.0449 (6)
N200.1627 (4)0.49731 (13)0.3120 (3)0.0405 (6)
C210.0784 (5)0.50587 (19)0.4044 (5)0.0551 (10)
H21A0.0757160.4699850.4484880.083*
H21B0.0382640.5191220.3574180.083*
H21C0.1409920.5342510.4694630.083*
C220.1605 (5)0.54375 (17)0.2284 (4)0.0503 (9)
H22A0.2590760.5411760.2021530.075*
H22B0.1652690.5794670.2750690.075*
H22C0.0555710.5424990.1503770.075*
C230.2273 (5)0.44708 (17)0.3000 (4)0.0456 (8)
H230.2181150.4172830.3550740.055*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S20.0435 (3)0.0159 (3)0.0262 (3)0.0076 (2)0.0178 (3)0.0043 (2)
S90.0488 (3)0.0145 (3)0.0281 (3)0.0061 (2)0.0234 (3)0.0048 (2)
O180.0219 (7)0.0219 (8)0.0180 (9)0.0023 (7)0.0067 (6)0.0003 (7)
N10.0383 (11)0.0165 (9)0.0250 (11)0.0039 (8)0.0172 (9)0.0016 (9)
N30.0264 (9)0.0145 (9)0.0198 (10)0.0028 (7)0.0117 (8)0.0030 (8)
N40.0233 (8)0.0140 (9)0.0230 (10)0.0021 (7)0.0112 (8)0.0016 (8)
N70.0298 (9)0.0144 (9)0.0200 (10)0.0022 (8)0.0120 (8)0.0017 (8)
N80.0390 (11)0.0148 (10)0.0236 (11)0.0044 (9)0.0191 (9)0.0029 (9)
N100.0538 (14)0.0157 (10)0.0324 (13)0.0092 (10)0.0287 (11)0.0052 (9)
C20.0205 (9)0.0158 (11)0.0232 (12)0.0015 (8)0.0090 (9)0.0009 (9)
C50.0221 (10)0.0135 (10)0.0192 (11)0.0007 (8)0.0093 (9)0.0007 (8)
C60.0307 (11)0.0158 (11)0.0208 (11)0.0010 (9)0.0141 (9)0.0012 (10)
C90.0345 (12)0.0169 (12)0.0248 (12)0.0016 (9)0.0141 (10)0.0011 (10)
C110.0199 (9)0.0165 (10)0.0186 (11)0.0023 (8)0.0081 (8)0.0007 (9)
C120.014 (3)0.023 (5)0.013 (4)0.002 (3)0.005 (2)0.002 (3)
C130.028 (3)0.015 (4)0.017 (4)0.001 (2)0.011 (2)0.007 (3)
C140.020 (2)0.031 (5)0.023 (4)0.004 (3)0.007 (2)0.004 (4)
C150.025 (4)0.025 (5)0.024 (4)0.000 (3)0.011 (3)0.003 (3)
C160.025 (4)0.021 (4)0.017 (4)0.002 (3)0.009 (3)0.002 (3)
C170.019 (3)0.016 (4)0.013 (4)0.000 (3)0.008 (3)0.004 (2)
C12A0.033 (5)0.013 (4)0.011 (5)0.004 (3)0.014 (3)0.000 (3)
C13A0.019 (3)0.028 (6)0.020 (5)0.004 (3)0.008 (3)0.005 (4)
C14A0.023 (3)0.025 (6)0.021 (5)0.003 (4)0.008 (3)0.004 (4)
C15A0.018 (3)0.022 (6)0.020 (5)0.002 (4)0.006 (3)0.004 (4)
C16A0.030 (5)0.021 (5)0.018 (5)0.004 (4)0.009 (4)0.003 (4)
C17A0.022 (4)0.020 (5)0.019 (6)0.008 (4)0.006 (4)0.001 (4)
C190.0297 (11)0.0270 (13)0.0184 (12)0.0000 (10)0.0065 (10)0.0003 (10)
O240.0539 (13)0.0453 (14)0.0487 (15)0.0031 (11)0.0343 (12)0.0024 (11)
N200.0429 (13)0.0399 (15)0.0428 (16)0.0030 (11)0.0206 (12)0.0034 (13)
C210.056 (2)0.060 (2)0.060 (3)0.0086 (19)0.0335 (19)0.013 (2)
C220.0547 (19)0.0407 (18)0.059 (2)0.0030 (16)0.0248 (17)0.0019 (18)
C230.0524 (18)0.0432 (18)0.050 (2)0.0031 (15)0.0299 (17)0.0010 (16)
Geometric parameters (Å, º) top
S2—C21.680 (3)C15—C161.368 (9)
S9—C91.697 (3)C15—H150.9500
O18—C111.426 (3)C16—C171.394 (9)
O18—C191.430 (3)C16—H160.9500
N1—C21.319 (4)C17—H170.9500
N1—H1A0.92 (2)C12A—C17A1.390 (14)
N1—H1B0.92 (2)C12A—C13A1.407 (13)
N3—N41.365 (3)C13A—C14A1.413 (13)
N3—C21.366 (3)C13A—H13A0.9500
N3—H30.90 (2)C14A—C15A1.398 (12)
N4—C51.294 (3)C14A—H14A0.9500
N7—C61.288 (3)C15A—C16A1.361 (12)
N7—N81.362 (3)C15A—H15A0.9500
N8—C91.360 (3)C16A—C17A1.401 (13)
N8—H80.88 (2)C16A—H16A0.9500
N10—C91.318 (4)C17A—H17A0.9500
N10—H10A0.91 (2)C19—H19A0.9800
N10—H10B0.90 (2)C19—H19B0.9800
C5—C61.452 (3)C19—H19C0.9800
C5—C111.530 (3)O24—C231.238 (4)
C6—H60.9500N20—C231.332 (5)
C11—C12A1.492 (19)N20—C221.426 (5)
C11—C121.558 (13)N20—C211.456 (5)
C11—H111.0000C21—H21A0.9800
C12—C171.384 (10)C21—H21B0.9800
C12—C131.402 (10)C21—H21C0.9800
C13—C141.404 (10)C22—H22A0.9800
C13—H130.9500C22—H22B0.9800
C14—C151.387 (9)C22—H22C0.9800
C14—H140.9500C23—H230.9500
C11—O18—C19112.21 (18)C15—C16—H16119.6
C2—N1—H1A117 (3)C17—C16—H16119.6
C2—N1—H1B121 (3)C12—C17—C16119.3 (8)
H1A—N1—H1B119 (4)C12—C17—H17120.3
N4—N3—C2120.8 (2)C16—C17—H17120.3
N4—N3—H3120 (2)C17A—C12A—C13A119.3 (13)
C2—N3—H3118 (2)C17A—C12A—C11121.0 (13)
C5—N4—N3116.6 (2)C13A—C12A—C11119.7 (13)
C6—N7—N8116.0 (2)C12A—C13A—C14A118.2 (12)
C9—N8—N7118.7 (2)C12A—C13A—H13A120.9
C9—N8—H8119 (2)C14A—C13A—H13A120.9
N7—N8—H8123 (2)C15A—C14A—C13A121.2 (10)
C9—N10—H10A128 (2)C15A—C14A—H14A119.4
C9—N10—H10B124 (3)C13A—C14A—H14A119.4
H10A—N10—H10B107 (4)C16A—C15A—C14A120.2 (10)
N1—C2—N3117.3 (2)C16A—C15A—H15A119.9
N1—C2—S2125.8 (2)C14A—C15A—H15A119.9
N3—C2—S2116.9 (2)C15A—C16A—C17A119.5 (11)
N4—C5—C6114.5 (2)C15A—C16A—H16A120.3
N4—C5—C11125.7 (2)C17A—C16A—H16A120.3
C6—C5—C11119.8 (2)C12A—C17A—C16A121.7 (12)
N7—C6—C5119.3 (2)C12A—C17A—H17A119.2
N7—C6—H6120.3C16A—C17A—H17A119.2
C5—C6—H6120.3O18—C19—H19A109.5
N10—C9—N8117.3 (2)O18—C19—H19B109.5
N10—C9—S9123.8 (2)H19A—C19—H19B109.5
N8—C9—S9118.9 (2)O18—C19—H19C109.5
O18—C11—C12A117.2 (9)H19A—C19—H19C109.5
O18—C11—C5106.77 (19)H19B—C19—H19C109.5
C12A—C11—C5108.1 (10)C23—N20—C22121.8 (3)
O18—C11—C12109.5 (6)C23—N20—C21121.2 (3)
C5—C11—C12112.3 (8)C22—N20—C21116.8 (3)
O18—C11—H11109.4N20—C21—H21A109.5
C5—C11—H11109.4N20—C21—H21B109.5
C12—C11—H11109.4H21A—C21—H21B109.5
C17—C12—C13120.6 (9)N20—C21—H21C109.5
C17—C12—C11121.8 (9)H21A—C21—H21C109.5
C13—C12—C11117.5 (9)H21B—C21—H21C109.5
C12—C13—C14118.9 (8)N20—C22—H22A109.5
C12—C13—H13120.6N20—C22—H22B109.5
C14—C13—H13120.6H22A—C22—H22B109.5
C15—C14—C13119.9 (8)N20—C22—H22C109.5
C15—C14—H14120.1H22A—C22—H22C109.5
C13—C14—H14120.1H22B—C22—H22C109.5
C16—C15—C14120.5 (8)O24—C23—N20125.1 (4)
C16—C15—H15119.8O24—C23—H23117.5
C14—C15—H15119.8N20—C23—H23117.5
C15—C16—C17120.8 (8)
C2—N3—N4—C5175.4 (2)C5—C11—C12—C1373.3 (16)
C6—N7—N8—C9175.4 (2)C17—C12—C13—C140 (3)
N4—N3—C2—N11.7 (3)C11—C12—C13—C14176.8 (14)
N4—N3—C2—S2179.27 (16)C12—C13—C14—C150 (2)
N3—N4—C5—C6179.78 (19)C13—C14—C15—C161.5 (19)
N3—N4—C5—C110.4 (3)C14—C15—C16—C172.8 (19)
N8—N7—C6—C5179.5 (2)C13—C12—C17—C161 (3)
N4—C5—C6—N7175.5 (2)C11—C12—C17—C16178.0 (14)
C11—C5—C6—N74.3 (3)C15—C16—C17—C123 (2)
N7—N8—C9—N102.6 (4)O18—C11—C12A—C17A12 (2)
N7—N8—C9—S9178.22 (17)C5—C11—C12A—C17A109 (2)
C19—O18—C11—C12A79.2 (11)O18—C11—C12A—C13A165.2 (16)
C19—O18—C11—C5159.5 (2)C5—C11—C12A—C13A74 (2)
C19—O18—C11—C1278.8 (8)C17A—C12A—C13A—C14A1 (3)
N4—C5—C11—O1850.3 (3)C11—C12A—C13A—C14A178.2 (18)
C6—C5—C11—O18129.9 (2)C12A—C13A—C14A—C15A0 (3)
N4—C5—C11—C12A76.6 (9)C13A—C14A—C15A—C16A0 (2)
C6—C5—C11—C12A103.2 (9)C14A—C15A—C16A—C17A2 (2)
N4—C5—C11—C1269.6 (6)C13A—C12A—C17A—C16A3 (4)
C6—C5—C11—C12110.1 (6)C11—C12A—C17A—C16A179.8 (19)
O18—C11—C12—C1714.8 (19)C15A—C16A—C17A—C12A4 (3)
C5—C11—C12—C17103.6 (16)C22—N20—C23—O244.0 (6)
O18—C11—C12—C13168.3 (13)C21—N20—C23—O24178.9 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1A···N40.92 (3)2.27 (4)2.670 (3)106 (3)
N1—H1B···S9i0.92 (4)2.54 (4)3.450 (2)172 (4)
N3—H3···O180.90 (2)2.04 (3)2.694 (3)129 (3)
N8—H8···O24ii0.87 (3)2.07 (4)2.847 (4)149 (3)
N10—H10A···S9iii0.91 (3)2.72 (3)3.570 (3)156 (3)
N10—H10B···S2iv0.91 (4)2.42 (4)3.322 (3)175 (4)
C6—H6···O24ii0.952.543.224 (4)129
C11—H11···N71.002.422.853 (3)105
C11—H11···S9iii1.002.873.706 (2)141
C17—H17···O180.952.452.787 (16)101
C21—H21B···S9v0.982.983.951 (5)171
Symmetry codes: (i) x1/2, y+1/2, z; (ii) x, y+1, z+1/2; (iii) x, y+1, z1/2; (iv) x+1/2, y1/2, z; (v) x1, y+1, z1/2.
Summary of short interatomic contacts (Å) in the title compound top
ContactDistanceSymmetry operation
S2···H10B2.42-1/2 + x, 1/2 + y, z
H16···O242.731/2 + x, 1/2 + y, z
H19A···N32.71-1/2 + x, 3/2 - y, -1/2 + z
S9···H10A2.72x, 1 - y, 1/2 + z
S9···H21B2.981 + x, 1 - y, 1/2 + z
H6···H16A2.49-1/2 + x, 3/2 - y, 1/2 + z
N3···H15A2.56-1 + x, y, z
H8···O242.07x, 1 - y, 1/2 + z
H19B···H22A2.58x, y, z
H22C···H21A2.31x, 1 - y, -1/2 + z
 

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