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The title compound, C19H30O9, was prepared by substitution at the C6 position in 1,2;3,4-di-O-isopropyl­idene-6-O-trifluoro­methane­sulfonyl-D-galactose using sodium eth­oxy­malonate in dimethyl­formamide. The conformation is skew-boat 0S2, slightly distorted towards boat B2,5. The inflexible pyran­ose structure makes the title compound a suitable inter­mediate for further synthetic work by keeping stereogenic carbon atoms safe from inversion. Several short intra­molecular C—H... O contacts may stabilize the conformation of the mol­ecule. Inter­molecular C—H...O inter­actions also occur.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536810046921/zl2327sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536810046921/zl2327Isup2.hkl
Contains datablock I

CCDC reference: 803216

Key indicators

  • Single-crystal X-ray study
  • T = 292 K
  • Mean [sigma](C-C) = 0.003 Å
  • R factor = 0.040
  • wR factor = 0.096
  • Data-to-parameter ratio = 13.6

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for O5 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C9 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C17 PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 5 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.595 4
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 66.49 From the CIF: _reflns_number_total 3745 Count of symmetry unique reflns 2184 Completeness (_total/calc) 171.47% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1561 Fraction of Friedel pairs measured 0.715 Are heavy atom types Z>Si present no PLAT916_ALERT_2_G Hooft y and Flack x Parameter values differ by . 0.15 PLAT791_ALERT_4_G Note: The Model has Chirality at C1 (Verify) R PLAT791_ALERT_4_G Note: The Model has Chirality at C2 (Verify) R PLAT791_ALERT_4_G Note: The Model has Chirality at C3 (Verify) S PLAT791_ALERT_4_G Note: The Model has Chirality at C4 (Verify) S PLAT791_ALERT_4_G Note: The Model has Chirality at C5 (Verify) R
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 5 ALERT level C = Check and explain 7 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 4 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 6 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Comment top

The title compound is an intermediate for the synthesis of a wide range of chain-extended galactopyranoses, which in turn are considered as precursors of chiral α-hydroxycarboxylic acids. The stereogenic atom C5 is retained in the target compounds. Knowledge of exact geometry of the intermediate is helpful for better understanding of upcoming steps in this ongoing synthetic project.

To realise these objectives we (BD & PRS) have prepared the title compound by substitution at the C6 position in 1,2;3,4-di-O-isopropylidene-6-O-trifluoromethanesulfonyl-D-galactose using sodium ethoxymalonate. Substitutions at this atom in diisopropylidene-galactose are rather difficult and require prolonged reaction times and/or elevated temperatures (Tipson, 1953, Honeyman & Stening, 1958, Sugihara et al., 1963, Bouhlal et al., 2001). Howeever, by using the best available leaving group, a trifluoromethanesulfonate, smooth nucleophilic substitution can been accomplished in less than 10 min (Doboszewski et al., 1987).

The absolute structure of 6-deoxy-6-(diethylmalonyl)-1,2;3,4-di-O -isopropylidene-D-galactopyranose is certain from the synthetic route which does not affect asymmetric atoms of the starting compound. Nevertheless, we preferred to receive a direct experimental confirmation using X-ray diffractometry data. Because there are no heavy atoms in a chiral molecule of title compound, Cu Kα radiation was necessary for determination of the absolute structure.

In the crystal structure of title compound (Fig.1), all bond lengths and bond angles have standard dimensions.

Fig. 2 shows that the pyranose ring adopts a skew-boat with atoms C1, C3, C4, and C5 being within 0.03–0.08 Å from their mean plane, and O1 and C2 atoms being at 0.633 (2) and -0.557 (2) Å, respectively. Such conformation is named OS2 in the IUPAC notation (Schwarz, 1973). A quantitative analysis of the ring conformations in the titlw compound was performed using the method of Cremer and Pople (Cremer & Pople, 1975, Boeyens, 1978) for the calculation of parameters of puckering. The polar parameters for the pyranose ring are Q = 0.639 (2) Å, Φ = 325.1 (2)°, and θ = 80.3 (2)°. These suggest the conformation as skew-boat 0S2 (Φ = 330°, θ = 90°), slightly distorted towards boat B2,5, (Φ = 300°, θ = 90°); the same conformation is designated as a twist-boat OT2 when using the Boeyenes nomenclature. This conformation is similar to many other known galactopyranoses with two substituent isopropylidene rings (see, for example, POCSUV (Krajewski et al., 1994): Q = 0.632 (5) Å, θ = 82.8 (5)°,Φ = 327.4 (4)°; JERJIUL (Krajewski et al., 1990): Q = 0.631 (5) Å, θ = 79.7 (5)°, Φ = 324.9 (5)°; ICALED (Coutrot et al., 2001): Q = 0.646 (4) Å, θ = 83.9 (4)°, Φ = 334.2 (3)°; BIHZUO (Weaver et al., 2004): Q = 0.661 (2) Å, θ = 81.3 (2)°, Φ = 327.1 (2)°; ADXPOP (Boeyens, Rathbone & Woolard,1978): Q = 0.65 Å, Φ = 329°, θ = 81°). All conformations of substituted compounds are radically different from the chair conformation of unsubstituted α -D-galactopyranose. This is caused by the presence of the two isopropylidene substituents that make the geometry of the pyranose ring more rigid and less sensitive towards any effects of substituents at the remaining C5 position. A detailed discussion of terminology and different puckering coordinates being used to describe six-membered non-aromatic cycles can be found in Hill & Reilly (2007) and Köll et al. (1994).

The same approach yielded the parameters of puckering Q(2) = 0.279 (2) Å, Φ = 283.3 (4)° and Q(2) = 0.234 (2) Å, Φ = 177.1 (7)° for the 1,2- and 3,4- isopropylidene rings. These values correspond to the envelope conformations 4E (Φ = 288°) and E1 (Φ = 180°) with atoms O3 and O4 being out of their corresponding planes by 0.426 (2) and 0.357 (2) Å correspondingly (Fig. 3 and 4). All other atoms in both five-membered rings are located within 0.01 Å from their mean planes.

No classic hydrogen bonds are possible for the title compound. However, several short C—H··· O contacts were detected that possibly stabilize the existing conformation of the molecule (Table 1).

The inflexible pyranose structure makes the title compound a suitable intermediate for further synthetic work by keeping the stereogenic carbon atoms C1—C5 safe from inversion. For the same reason, it is very probable that in solution this molecule will keep almost the same geometry as in the molecular crystal.

Related literature top

For syntheses of this and similar compounds, see: Bouhlal et al. (2001); Doboszewski et al. (1987); Honeyman & Stening (1958); Sugihara et al. (1963); Tipson (1953); Cipolla et al. (1996). For the structures of diisopropylidene-galactopyranose and related compounds, see: Krajewski et al. (1990, 1994); Coutrot et al. (2001); Weaver et al. (2004, 2006); Boeyens et al. (1978); Berces et al. (2001). For conformations of small rings, see: Schwarz (1973); Cremer & Pople (1975); Boeyens (1978); Hill & Reilly (2007); Köll et al. (1994). For analysis of absolute structure, see: Flack (1983); Hooft et al. (2008).

Experimental top

Synthesis of the title compound was accomplished similar to previuosly published fluorination reaction (Doboszewski et al., 1987). We treated 1,2;3,4-di-O-isopropylidene-6-O-trifluoromethanesulfonyl-D- galactose with sodium ethoxymalonate in dimethylformamide at 333 K; the title compound was isolated in 80% yield (Figure 5). The compound is identical to previously obtained via a free-radical process in low yield (Cipolla et al., 1996). Spontaneous crystallization from a hexane-ethyl acetate system yielded colourless crystals suitable for single-crystal diffractometry (m.p. 331–334 K).

Refinement top

The chirality of the title compound was known from the synthetic route; it was also examined using anomalous scattering. Analysis of the absolute structure using likelihood methods (Hooft et al., 2008) was performed using PLATON (Spek, 2003); 1570 Bijvoet pairs were employed. The results confirmed that the absolute structure had been correctly assigned: the probability that the structure is inverted is smaller than 10-9 with probability of racemic twinning at 0.002. Because no atom heavier than O is present, the standard deviation of the Flack parameter is relatively high. All H atoms were positioned geometrically and refined using a riding model, with C–H = 0.99–1.03 Å and Uiso(H) = 1.2 or 1.5 Ueq(C). The rotating group model was applied for the methyl groups.

Structure description top

The title compound is an intermediate for the synthesis of a wide range of chain-extended galactopyranoses, which in turn are considered as precursors of chiral α-hydroxycarboxylic acids. The stereogenic atom C5 is retained in the target compounds. Knowledge of exact geometry of the intermediate is helpful for better understanding of upcoming steps in this ongoing synthetic project.

To realise these objectives we (BD & PRS) have prepared the title compound by substitution at the C6 position in 1,2;3,4-di-O-isopropylidene-6-O-trifluoromethanesulfonyl-D-galactose using sodium ethoxymalonate. Substitutions at this atom in diisopropylidene-galactose are rather difficult and require prolonged reaction times and/or elevated temperatures (Tipson, 1953, Honeyman & Stening, 1958, Sugihara et al., 1963, Bouhlal et al., 2001). Howeever, by using the best available leaving group, a trifluoromethanesulfonate, smooth nucleophilic substitution can been accomplished in less than 10 min (Doboszewski et al., 1987).

The absolute structure of 6-deoxy-6-(diethylmalonyl)-1,2;3,4-di-O -isopropylidene-D-galactopyranose is certain from the synthetic route which does not affect asymmetric atoms of the starting compound. Nevertheless, we preferred to receive a direct experimental confirmation using X-ray diffractometry data. Because there are no heavy atoms in a chiral molecule of title compound, Cu Kα radiation was necessary for determination of the absolute structure.

In the crystal structure of title compound (Fig.1), all bond lengths and bond angles have standard dimensions.

Fig. 2 shows that the pyranose ring adopts a skew-boat with atoms C1, C3, C4, and C5 being within 0.03–0.08 Å from their mean plane, and O1 and C2 atoms being at 0.633 (2) and -0.557 (2) Å, respectively. Such conformation is named OS2 in the IUPAC notation (Schwarz, 1973). A quantitative analysis of the ring conformations in the titlw compound was performed using the method of Cremer and Pople (Cremer & Pople, 1975, Boeyens, 1978) for the calculation of parameters of puckering. The polar parameters for the pyranose ring are Q = 0.639 (2) Å, Φ = 325.1 (2)°, and θ = 80.3 (2)°. These suggest the conformation as skew-boat 0S2 (Φ = 330°, θ = 90°), slightly distorted towards boat B2,5, (Φ = 300°, θ = 90°); the same conformation is designated as a twist-boat OT2 when using the Boeyenes nomenclature. This conformation is similar to many other known galactopyranoses with two substituent isopropylidene rings (see, for example, POCSUV (Krajewski et al., 1994): Q = 0.632 (5) Å, θ = 82.8 (5)°,Φ = 327.4 (4)°; JERJIUL (Krajewski et al., 1990): Q = 0.631 (5) Å, θ = 79.7 (5)°, Φ = 324.9 (5)°; ICALED (Coutrot et al., 2001): Q = 0.646 (4) Å, θ = 83.9 (4)°, Φ = 334.2 (3)°; BIHZUO (Weaver et al., 2004): Q = 0.661 (2) Å, θ = 81.3 (2)°, Φ = 327.1 (2)°; ADXPOP (Boeyens, Rathbone & Woolard,1978): Q = 0.65 Å, Φ = 329°, θ = 81°). All conformations of substituted compounds are radically different from the chair conformation of unsubstituted α -D-galactopyranose. This is caused by the presence of the two isopropylidene substituents that make the geometry of the pyranose ring more rigid and less sensitive towards any effects of substituents at the remaining C5 position. A detailed discussion of terminology and different puckering coordinates being used to describe six-membered non-aromatic cycles can be found in Hill & Reilly (2007) and Köll et al. (1994).

The same approach yielded the parameters of puckering Q(2) = 0.279 (2) Å, Φ = 283.3 (4)° and Q(2) = 0.234 (2) Å, Φ = 177.1 (7)° for the 1,2- and 3,4- isopropylidene rings. These values correspond to the envelope conformations 4E (Φ = 288°) and E1 (Φ = 180°) with atoms O3 and O4 being out of their corresponding planes by 0.426 (2) and 0.357 (2) Å correspondingly (Fig. 3 and 4). All other atoms in both five-membered rings are located within 0.01 Å from their mean planes.

No classic hydrogen bonds are possible for the title compound. However, several short C—H··· O contacts were detected that possibly stabilize the existing conformation of the molecule (Table 1).

The inflexible pyranose structure makes the title compound a suitable intermediate for further synthetic work by keeping the stereogenic carbon atoms C1—C5 safe from inversion. For the same reason, it is very probable that in solution this molecule will keep almost the same geometry as in the molecular crystal.

For syntheses of this and similar compounds, see: Bouhlal et al. (2001); Doboszewski et al. (1987); Honeyman & Stening (1958); Sugihara et al. (1963); Tipson (1953); Cipolla et al. (1996). For the structures of diisopropylidene-galactopyranose and related compounds, see: Krajewski et al. (1990, 1994); Coutrot et al. (2001); Weaver et al. (2004, 2006); Boeyens et al. (1978); Berces et al. (2001). For conformations of small rings, see: Schwarz (1973); Cremer & Pople (1975); Boeyens (1978); Hill & Reilly (2007); Köll et al. (1994). For analysis of absolute structure, see: Flack (1983); Hooft et al. (2008).

Computing details top

Data collection: CrystalClear-SM Expert (Rigaku, 2009); cell refinement: HKL-2000 (Otwinowski & Minor, 1997); data reduction: CrystalClear-SM Expert (Rigaku, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999); software used to prepare material for publication: PLATON (Spek, 2009).

Figures top
[Figure 1] Fig. 1. The title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as spheres of arbitary radius.
[Figure 2] Fig. 2. Conformation of the six-membered ring: mean plane drawn through C1—C3—C4—C5.
[Figure 3] Fig. 3. Conformation of the five-membered isopropylidene ring: plane through C1 C2 C6 O2.
[Figure 4] Fig. 4. Conformation of the five-membered isopropylidene ring: plane through C3 C9 O5 C4.
[Figure 5] Fig. 5. Synthetic route towards the title compound.
6-[Bis(ethoxycarbonyl)methyl]-6-deoxy-1,2;3,4-di-O-isopropylidene- D-galactopyranose top
Crystal data top
C19H30O9Dx = 1.240 Mg m3
Mr = 402.43Melting point: 322 K
Orthorhombic, P212121Cu Kα radiation, λ = 1.54187 Å
Hall symbol: P 2ac 2abCell parameters from 9579 reflections
a = 8.3287 (4) Åθ = 6.7–68.2°
b = 10.8895 (4) ŵ = 0.83 mm1
c = 23.7706 (16) ÅT = 292 K
V = 2155.9 (2) Å3Prism, colourless
Z = 40.38 × 0.26 × 0.21 mm
F(000) = 864
Data collection top
Rigaku R-AXIS RAPID II imaging plate
diffractometer
3745 independent reflections
Radiation source: fine-focus sealed tube2824 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.075
Detector resolution: 10 pixels mm-1θmax = 66.5°, θmin = 6.7°
ω scansh = 69
Absorption correction: multi-scan
(ABSCOR; Higashi,1995)
k = 1210
Tmin = 0.822, Tmax = 0.840l = 2819
9353 measured reflections
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.040 w = 1/[σ2(Fo2) + (0.0285P)2]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.096(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.19 e Å3
3745 reflectionsΔρmin = 0.15 e Å3
275 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0057 (5)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1607 Friedel pairs
Secondary atom site location: difference Fourier mapAbsolute structure parameter: 0.06 (18)
Crystal data top
C19H30O9V = 2155.9 (2) Å3
Mr = 402.43Z = 4
Orthorhombic, P212121Cu Kα radiation
a = 8.3287 (4) ŵ = 0.83 mm1
b = 10.8895 (4) ÅT = 292 K
c = 23.7706 (16) Å0.38 × 0.26 × 0.21 mm
Data collection top
Rigaku R-AXIS RAPID II imaging plate
diffractometer
3745 independent reflections
Absorption correction: multi-scan
(ABSCOR; Higashi,1995)
2824 reflections with I > 2σ(I)
Tmin = 0.822, Tmax = 0.840Rint = 0.075
9353 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.096Δρmax = 0.19 e Å3
S = 1.02Δρmin = 0.15 e Å3
3745 reflectionsAbsolute structure: Flack (1983), 1607 Friedel pairs
275 parametersAbsolute structure parameter: 0.06 (18)
0 restraints
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.30842 (18)0.05824 (11)0.37716 (6)0.0531 (4)
O20.2263 (2)0.25329 (12)0.35151 (6)0.0653 (5)
O30.2044 (2)0.30221 (12)0.44385 (6)0.0646 (5)
O40.0989 (2)0.00622 (15)0.48415 (7)0.0747 (5)
O50.3563 (2)0.07330 (14)0.48515 (7)0.0817 (6)
O60.6685 (2)0.16820 (13)0.27264 (7)0.0718 (5)
O70.7237 (2)0.22413 (15)0.36113 (7)0.0852 (6)
O80.7062 (2)0.17738 (13)0.31233 (6)0.0666 (5)
O90.8976 (2)0.03812 (18)0.32008 (11)0.1155 (9)
C10.1819 (3)0.14252 (17)0.37891 (9)0.0523 (6)
H1A0.088 (2)0.1070 (8)0.3597 (4)0.063*
C20.1329 (3)0.18443 (17)0.43770 (9)0.0573 (6)
H2A0.012 (3)0.1918 (2)0.43999 (11)0.069*
C30.1939 (3)0.10213 (19)0.48485 (10)0.0600 (6)
H3A0.1836 (4)0.1456 (10)0.5227 (8)0.072*
C40.3665 (3)0.0557 (2)0.47632 (9)0.0566 (6)
H4A0.4367 (16)0.0921 (8)0.5044 (6)0.068*
C50.4315 (3)0.0817 (2)0.41783 (9)0.0490 (5)
H5A0.4630 (7)0.1708 (18)0.41554 (10)0.059*
C60.2124 (3)0.35512 (18)0.38911 (9)0.0580 (6)
C70.3592 (3)0.4335 (2)0.38497 (12)0.0860 (10)
H7A0.3572 (11)0.4945 (14)0.4142 (7)0.129*
H7B0.3615 (12)0.4733 (15)0.3489 (6)0.129*
H7C0.4532 (15)0.3831 (8)0.3892 (8)0.129*
C80.0607 (3)0.4254 (2)0.37542 (11)0.0742 (8)
H8A0.0457 (11)0.4951 (13)0.4040 (6)0.111*
H8B0.0360 (13)0.3671 (8)0.3773 (7)0.111*
H8C0.0694 (9)0.4617 (14)0.3357 (6)0.111*
C90.1971 (3)0.1063 (2)0.49989 (10)0.0657 (7)
C100.1486 (5)0.2177 (2)0.46606 (14)0.1124 (13)
H10A0.034 (2)0.2405 (13)0.4754 (7)0.169*
H10B0.222 (2)0.2886 (14)0.4756 (8)0.169*
H10C0.157 (3)0.1985 (8)0.4246 (7)0.169*
C110.1883 (4)0.1306 (3)0.56235 (11)0.0901 (10)
H11A0.0735 (17)0.1545 (17)0.5730 (2)0.135*
H11B0.221 (2)0.0531 (13)0.5838 (3)0.135*
H11C0.265 (2)0.2007 (15)0.5725 (2)0.135*
C120.5762 (3)0.00309 (19)0.40257 (9)0.0557 (6)
H12A0.5494 (4)0.0868 (13)0.40954 (15)0.067*
H12B0.6699 (14)0.0260 (3)0.4279 (4)0.067*
C130.6261 (3)0.01977 (16)0.34089 (9)0.0510 (6)
H13A0.535 (2)0.0017 (4)0.3179 (5)0.061*
C140.6788 (3)0.1493 (2)0.32781 (11)0.0585 (6)
C150.7163 (4)0.2883 (2)0.25156 (13)0.0870 (10)
H15A0.826 (2)0.3111 (5)0.2665 (3)0.104*
H15B0.6368 (15)0.3532 (13)0.2641 (3)0.104*
C160.7196 (4)0.2807 (2)0.18966 (12)0.0887 (10)
H16A0.799 (2)0.2184 (16)0.1779 (2)0.133*
H16B0.750 (2)0.3614 (13)0.1739 (3)0.133*
H16C0.6122 (18)0.2572 (17)0.1757 (3)0.133*
C170.7604 (3)0.0665 (2)0.32388 (10)0.0608 (6)
C180.8256 (3)0.2666 (2)0.29360 (12)0.0725 (8)
H18A0.9058 (14)0.2830 (3)0.3248 (5)0.087*
H18B0.8859 (11)0.2336 (6)0.2598 (5)0.087*
C190.7401 (4)0.3825 (2)0.27835 (11)0.0828 (10)
H19A0.6860 (18)0.4159 (10)0.3119 (5)0.124*
H19B0.8182 (11)0.4430 (10)0.2641 (7)0.124*
H19C0.6597 (18)0.3651 (4)0.2490 (6)0.124*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0620 (10)0.0461 (7)0.0511 (9)0.0023 (8)0.0101 (7)0.0076 (7)
O20.0976 (13)0.0470 (8)0.0515 (9)0.0008 (8)0.0044 (9)0.0014 (6)
O30.0955 (13)0.0472 (8)0.0510 (9)0.0018 (9)0.0093 (9)0.0041 (7)
O40.0744 (13)0.0687 (10)0.0811 (13)0.0030 (10)0.0129 (9)0.0232 (9)
O50.0809 (13)0.0615 (9)0.1028 (14)0.0083 (10)0.0273 (11)0.0349 (9)
O60.0982 (15)0.0526 (8)0.0645 (11)0.0142 (9)0.0074 (10)0.0135 (8)
O70.1065 (16)0.0676 (10)0.0814 (13)0.0359 (11)0.0086 (12)0.0092 (9)
O80.0630 (11)0.0515 (8)0.0854 (12)0.0037 (9)0.0082 (10)0.0091 (8)
O90.0547 (12)0.0826 (12)0.209 (3)0.0130 (11)0.0071 (14)0.0325 (14)
C10.0597 (15)0.0464 (11)0.0508 (13)0.0018 (12)0.0106 (12)0.0010 (9)
C20.0730 (18)0.0486 (12)0.0504 (14)0.0037 (12)0.0039 (12)0.0024 (10)
C30.0764 (18)0.0570 (12)0.0466 (14)0.0017 (14)0.0079 (13)0.0032 (10)
C40.0679 (17)0.0551 (12)0.0467 (13)0.0024 (13)0.0017 (12)0.0068 (11)
C50.0588 (15)0.0430 (10)0.0452 (13)0.0078 (11)0.0057 (11)0.0016 (9)
C60.0759 (18)0.0446 (11)0.0534 (14)0.0025 (13)0.0021 (13)0.0002 (10)
C70.087 (2)0.0612 (15)0.110 (2)0.0130 (16)0.0115 (17)0.0115 (15)
C80.0827 (19)0.0598 (14)0.0800 (19)0.0081 (15)0.0057 (14)0.0083 (13)
C90.0756 (19)0.0581 (13)0.0635 (16)0.0010 (14)0.0195 (15)0.0125 (11)
C100.146 (4)0.0824 (19)0.108 (3)0.020 (2)0.013 (2)0.0156 (18)
C110.109 (2)0.0972 (19)0.0644 (17)0.015 (2)0.0238 (17)0.0259 (15)
C120.0600 (15)0.0517 (11)0.0555 (15)0.0035 (13)0.0012 (12)0.0091 (10)
C130.0539 (14)0.0458 (11)0.0534 (14)0.0058 (11)0.0009 (11)0.0032 (10)
C140.0595 (17)0.0515 (12)0.0645 (16)0.0050 (12)0.0059 (13)0.0027 (11)
C150.113 (3)0.0524 (13)0.096 (2)0.0125 (16)0.026 (2)0.0189 (14)
C160.091 (2)0.0784 (17)0.096 (2)0.0061 (17)0.0249 (19)0.0356 (16)
C170.0568 (17)0.0571 (13)0.0684 (16)0.0068 (13)0.0037 (13)0.0003 (12)
C180.0680 (19)0.0702 (15)0.0794 (18)0.0135 (16)0.0072 (15)0.0077 (13)
C190.109 (3)0.0585 (14)0.0807 (19)0.0077 (16)0.0041 (17)0.0091 (13)
Geometric parameters (Å, º) top
O1—C11.398 (2)C7—H7C0.9614
O1—C51.432 (2)C8—H8A1.0264
O2—C11.420 (2)C8—H8B1.0264
O2—C61.429 (2)C8—H8C1.0264
O3—C21.422 (2)C9—C111.510 (3)
O3—C61.425 (2)C9—C101.511 (4)
O4—C91.413 (3)C10—H10A1.0094
O4—C31.421 (2)C10—H10B1.0094
O5—C91.418 (3)C10—H10C1.0094
O5—C41.423 (3)C11—H11A1.0229
O6—C141.330 (3)C11—H11B1.0229
O6—C151.456 (2)C11—H11C1.0229
O7—C141.196 (3)C12—C131.535 (3)
O8—C171.317 (3)C12—H12A1.0171
O8—C181.460 (3)C12—H12B1.0171
O9—C171.187 (3)C13—C141.509 (3)
C1—C21.526 (3)C13—C171.515 (3)
C1—H1A0.9878C13—H13A0.9571
C2—C31.523 (3)C15—C161.474 (4)
C2—H2A1.0091C15—H15A1.0130
C3—C41.537 (3)C15—H15B1.0130
C3—H3A1.0200C16—H16A0.9879
C4—C51.518 (3)C16—H16B0.9879
C4—H4A0.9713C16—H16C0.9879
C5—C121.522 (3)C18—C191.494 (3)
C5—H5A1.0065C18—H18A1.0133
C6—C71.494 (3)C18—H18B1.0133
C6—C81.513 (3)C19—H19A0.9857
C7—H7A0.9614C19—H19B0.9857
C7—H7B0.9614C19—H19C0.9857
C1—O1—C5113.72 (15)O4—C9—C10108.9 (2)
C1—O2—C6110.56 (16)O5—C9—C10108.8 (2)
C2—O3—C6106.90 (15)C11—C9—C10111.7 (2)
C9—O4—C3108.33 (17)C9—C10—H10A109.5
C9—O5—C4110.03 (18)C9—C10—H10B109.5
C14—O6—C15117.44 (19)H10A—C10—H10B109.5
C17—O8—C18116.12 (19)C9—C10—H10C109.5
O1—C1—O2110.33 (18)H10A—C10—H10C109.5
O1—C1—C2115.16 (18)H10B—C10—H10C109.5
O2—C1—C2103.64 (15)C9—C11—H11A109.5
O1—C1—H1A109.2C9—C11—H11B109.5
O2—C1—H1A109.2H11A—C11—H11B109.5
C2—C1—H1A109.2C9—C11—H11C109.5
O3—C2—C3108.38 (19)H11A—C11—H11C109.5
O3—C2—C1104.60 (18)H11B—C11—H11C109.5
C3—C2—C1114.14 (18)C5—C12—C13112.06 (17)
O3—C2—H2A109.8C5—C12—H12A109.2
C3—C2—H2A109.8C13—C12—H12A109.2
C1—C2—H2A109.8C5—C12—H12B109.2
O4—C3—C2107.09 (19)C13—C12—H12B109.2
O4—C3—C4104.26 (18)H12A—C12—H12B107.9
C2—C3—C4114.1 (2)C14—C13—C17108.06 (19)
O4—C3—H3A110.4C14—C13—C12112.71 (17)
C2—C3—H3A110.4C17—C13—C12112.42 (17)
C4—C3—H3A110.4C14—C13—H13A107.8
O5—C4—C5109.92 (18)C17—C13—H13A107.8
O5—C4—C3104.44 (18)C12—C13—H13A107.8
C5—C4—C3113.11 (19)O7—C14—O6124.5 (2)
O5—C4—H4A109.7O7—C14—C13126.2 (2)
C5—C4—H4A109.7O6—C14—C13109.2 (2)
C3—C4—H4A109.7O6—C15—C16107.3 (2)
O1—C5—C4109.26 (18)O6—C15—H15A110.2
O1—C5—C12107.79 (17)C16—C15—H15A110.2
C4—C5—C12113.28 (17)O6—C15—H15B110.2
O1—C5—H5A108.8C16—C15—H15B110.2
C4—C5—H5A108.8H15A—C15—H15B108.5
C12—C5—H5A108.8C15—C16—H16A109.5
O3—C6—O2105.14 (15)C15—C16—H16B109.5
O3—C6—C7109.3 (2)H16A—C16—H16B109.5
O2—C6—C7109.6 (2)C15—C16—H16C109.5
O3—C6—C8111.2 (2)H16A—C16—H16C109.5
O2—C6—C8109.00 (19)H16B—C16—H16C109.5
C7—C6—C8112.36 (18)O9—C17—O8123.5 (2)
C6—C7—H7A109.5O9—C17—C13124.7 (2)
C6—C7—H7B109.5O8—C17—C13111.8 (2)
H7A—C7—H7B109.5O8—C18—C19108.2 (2)
C6—C7—H7C109.5O8—C18—H18A110.1
H7A—C7—H7C109.5C19—C18—H18A110.1
H7B—C7—H7C109.5O8—C18—H18B110.1
C6—C8—H8A109.5C19—C18—H18B110.1
C6—C8—H8B109.5H18A—C18—H18B108.4
H8A—C8—H8B109.5C18—C19—H19A109.5
C6—C8—H8C109.5C18—C19—H19B109.5
H8A—C8—H8C109.5H19A—C19—H19B109.5
H8B—C8—H8C109.5C18—C19—H19C109.5
O4—C9—O5106.31 (17)H19A—C19—H19C109.5
O4—C9—C11111.6 (2)H19B—C19—H19C109.5
O5—C9—C11109.4 (2)
C5—O1—C1—O278.7 (2)C2—O3—C6—C7146.7 (2)
C5—O1—C1—C238.2 (2)C2—O3—C6—C888.7 (2)
C6—O2—C1—O1122.13 (19)C1—O2—C6—O316.5 (3)
C6—O2—C1—C21.7 (3)C1—O2—C6—C7133.8 (2)
C6—O3—C2—C3152.18 (19)C1—O2—C6—C8102.8 (2)
C6—O3—C2—C130.0 (2)C3—O4—C9—O526.3 (2)
O1—C1—C2—O3101.3 (2)C3—O4—C9—C1193.0 (3)
O2—C1—C2—O319.2 (2)C3—O4—C9—C10143.3 (2)
O1—C1—C2—C316.9 (3)C4—O5—C9—O417.1 (3)
O2—C1—C2—C3137.5 (2)C4—O5—C9—C11103.5 (2)
C9—O4—C3—C2145.74 (19)C4—O5—C9—C10134.2 (2)
C9—O4—C3—C424.4 (2)O1—C5—C12—C1351.9 (2)
O3—C2—C3—O4169.21 (18)C4—C5—C12—C13172.91 (19)
C1—C2—C3—O474.7 (3)C5—C12—C13—C1462.8 (2)
O3—C2—C3—C476.0 (2)C5—C12—C13—C17174.81 (18)
C1—C2—C3—C440.2 (3)C15—O6—C14—O70.4 (4)
C9—O5—C4—C5123.7 (2)C15—O6—C14—C13179.3 (2)
C9—O5—C4—C32.1 (3)C17—C13—C14—O7104.0 (3)
O4—C3—C4—O513.5 (2)C12—C13—C14—O720.9 (4)
C2—C3—C4—O5129.97 (19)C17—C13—C14—O675.7 (3)
O4—C3—C4—C5106.0 (2)C12—C13—C14—O6159.4 (2)
C2—C3—C4—C510.5 (3)C14—O6—C15—C16171.0 (2)
C1—O1—C5—C469.3 (2)C18—O8—C17—O90.5 (4)
C1—O1—C5—C12167.25 (15)C18—O8—C17—C13177.98 (19)
O5—C4—C5—O174.9 (2)C14—C13—C17—O923.8 (3)
C3—C4—C5—O141.4 (2)C12—C13—C17—O9101.2 (3)
O5—C4—C5—C1245.3 (3)C14—C13—C17—O8154.6 (2)
C3—C4—C5—C12161.60 (18)C12—C13—C17—O880.4 (2)
C2—O3—C6—O229.2 (3)C17—O8—C18—C19175.6 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C1—H1A···O9i0.982.433.381 (3)163
C5—H5A···O71.012.593.185 (3)117
C8—H8B···O7i1.032.563.577 (3)169
C12—H12A···O51.022.422.811 (3)102
C13—H13A···O10.962.432.814 (3)103
C16—H16B···O1ii0.992.513.422 (3)153
Symmetry codes: (i) x1, y, z; (ii) x+1, y+1/2, z+1/2.

Experimental details

Crystal data
Chemical formulaC19H30O9
Mr402.43
Crystal system, space groupOrthorhombic, P212121
Temperature (K)292
a, b, c (Å)8.3287 (4), 10.8895 (4), 23.7706 (16)
V3)2155.9 (2)
Z4
Radiation typeCu Kα
µ (mm1)0.83
Crystal size (mm)0.38 × 0.26 × 0.21
Data collection
DiffractometerRigaku R-AXIS RAPID II imaging plate
Absorption correctionMulti-scan
(ABSCOR; Higashi,1995)
Tmin, Tmax0.822, 0.840
No. of measured, independent and
observed [I > 2σ(I)] reflections
9353, 3745, 2824
Rint0.075
(sin θ/λ)max1)0.595
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.040, 0.096, 1.02
No. of reflections3745
No. of parameters275
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.19, 0.15
Absolute structureFlack (1983), 1607 Friedel pairs
Absolute structure parameter0.06 (18)

Computer programs: CrystalClear-SM Expert (Rigaku, 2009), HKL-2000 (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1999), PLATON (Spek, 2009).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C1—H1A···O9i0.982.433.381 (3)163
C5—H5A···O71.012.593.185 (3)117
C8—H8B···O7i1.032.563.577 (3)169
C12—H12A···O51.022.422.811 (3)102
C13—H13A···O10.962.432.814 (3)103
C16—H16B···O1ii0.992.513.422 (3)153
Symmetry codes: (i) x1, y, z; (ii) x+1, y+1/2, z+1/2.
 

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