Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536812020211/zq2166sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536812020211/zq2166Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S1600536812020211/zq2166Isup3.cml |
CCDC reference: 852749
Key indicators
- Single-crystal X-ray study
- T = 292 K
- Mean (C-C) = 0.002 Å
- R factor = 0.031
- wR factor = 0.093
- Data-to-parameter ratio = 19.2
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 38
Alert level G PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 2 PLAT005_ALERT_5_G No _iucr_refine_instructions_details in CIF .... ? PLAT007_ALERT_5_G Note: Number of Unrefined D-H Atoms ............ 1 PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 1
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 1 ALERT level C = Check. Ensure it is not caused by an omission or oversight 4 ALERT level G = General information/check it is not something unexpected 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 2 ALERT type 5 Informative message, check
Commercially availbale hydroxylamine hydrochloride with p-dimethyl amino benzaldehyde was taken in equimolar ratio, were dissolved in double ethanol and stirred to yield a homogeneous mixture. The solution was allowed to evaporate at room temperature which yielded a brown crystalline salt. Single crystals were grown by slow evaporation from DMF.
Atom H1N was located from a difference Fourier map and refined with a distance restraint of 0.89 (2) Å. The remaining H atoms were positioned geometrically and were treated as riding on their parent C and O atoms, with C—H = 0.93 Å and Uiso = 1.2Ueq(C) for aromatic H atoms, with C—H = 0.96 Å and Uiso = 1.5Ueq(C) for methyl H atoms, and with O—H = 0.82 Å and Uiso = 1.2Ueq(O).
Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
C9H13N2O+·Cl− | F(000) = 424 |
Mr = 200.66 | Dx = 1.312 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 7257 reflections |
a = 11.2696 (10) Å | θ = 2.3–26.6° |
b = 11.7093 (10) Å | µ = 0.34 mm−1 |
c = 7.6961 (7) Å | T = 292 K |
β = 90.108 (2)° | Needle, brown |
V = 1015.57 (16) Å3 | 0.24 × 0.20 × 0.19 mm |
Z = 4 |
Bruker SMART APEX CCD area-detector diffractometer | 2240 reflections with I > 2σigma(I) |
Radiation source: fine-focus sealed tube | Rint = 0.025 |
Graphite monochromator | θmax = 28.0°, θmin = 1.8° |
ω scans | h = −14→14 |
11453 measured reflections | k = −15→15 |
2405 independent reflections | l = −9→10 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.093 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0536P)2 + 0.1829P] where P = (Fo2 + 2Fc2)/3 |
2405 reflections | (Δ/σ)max < 0.001 |
125 parameters | Δρmax = 0.23 e Å−3 |
1 restraint | Δρmin = −0.20 e Å−3 |
C9H13N2O+·Cl− | V = 1015.57 (16) Å3 |
Mr = 200.66 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.2696 (10) Å | µ = 0.34 mm−1 |
b = 11.7093 (10) Å | T = 292 K |
c = 7.6961 (7) Å | 0.24 × 0.20 × 0.19 mm |
β = 90.108 (2)° |
Bruker SMART APEX CCD area-detector diffractometer | 2240 reflections with I > 2σigma(I) |
11453 measured reflections | Rint = 0.025 |
2405 independent reflections |
R[F2 > 2σ(F2)] = 0.031 | 1 restraint |
wR(F2) = 0.093 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.23 e Å−3 |
2405 reflections | Δρmin = −0.20 e Å−3 |
125 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.16123 (3) | 0.02780 (2) | 0.86101 (4) | 0.04216 (12) | |
O1 | 0.81494 (8) | 0.28038 (8) | 0.48301 (14) | 0.0490 (2) | |
H1 | 0.8321 | 0.3407 | 0.5309 | 0.073* | |
N1 | 0.17646 (8) | 0.07318 (8) | 0.24932 (13) | 0.0370 (2) | |
H1N | 0.1744 (14) | 0.0531 (13) | 0.1354 (18) | 0.050 (4)* | |
N2 | 0.69124 (9) | 0.27159 (9) | 0.46814 (14) | 0.0405 (2) | |
C1 | 0.30082 (10) | 0.10295 (10) | 0.29034 (14) | 0.0354 (2) | |
C2 | 0.32816 (11) | 0.20083 (11) | 0.38181 (18) | 0.0472 (3) | |
H2 | 0.2683 | 0.2494 | 0.4197 | 0.057* | |
C3 | 0.44580 (11) | 0.22569 (11) | 0.41636 (18) | 0.0471 (3) | |
H3 | 0.4647 | 0.2913 | 0.4787 | 0.057* | |
C4 | 0.53633 (10) | 0.15418 (9) | 0.35930 (14) | 0.0351 (2) | |
C5 | 0.50650 (11) | 0.05628 (10) | 0.26681 (16) | 0.0395 (3) | |
H5 | 0.5661 | 0.0076 | 0.2283 | 0.047* | |
C6 | 0.38908 (11) | 0.03048 (9) | 0.23151 (16) | 0.0400 (3) | |
H6 | 0.3697 | −0.0349 | 0.1689 | 0.048* | |
C7 | 0.66167 (10) | 0.18062 (10) | 0.38936 (15) | 0.0370 (2) | |
H7 | 0.7199 | 0.1305 | 0.3506 | 0.044* | |
C8 | 0.08882 (12) | 0.16749 (13) | 0.2724 (2) | 0.0568 (4) | |
H8A | 0.0145 | 0.1459 | 0.2209 | 0.085* | |
H8B | 0.1179 | 0.2354 | 0.2172 | 0.085* | |
H8C | 0.0776 | 0.1818 | 0.3941 | 0.085* | |
C9 | 0.13654 (13) | −0.03099 (11) | 0.34631 (19) | 0.0494 (3) | |
H9A | 0.1896 | −0.0931 | 0.3223 | 0.074* | |
H9B | 0.0577 | −0.0512 | 0.3100 | 0.074* | |
H9C | 0.1367 | −0.0154 | 0.4688 | 0.074* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.04579 (19) | 0.03872 (18) | 0.04194 (19) | 0.00255 (10) | −0.00722 (12) | −0.00218 (10) |
O1 | 0.0383 (5) | 0.0437 (5) | 0.0649 (6) | −0.0055 (3) | −0.0106 (4) | −0.0029 (4) |
N1 | 0.0367 (5) | 0.0376 (5) | 0.0367 (5) | −0.0020 (4) | −0.0068 (4) | −0.0022 (4) |
N2 | 0.0368 (5) | 0.0381 (5) | 0.0467 (5) | −0.0010 (4) | −0.0075 (4) | 0.0001 (4) |
C1 | 0.0351 (5) | 0.0366 (5) | 0.0344 (5) | −0.0020 (4) | −0.0050 (4) | −0.0021 (4) |
C2 | 0.0380 (6) | 0.0472 (7) | 0.0564 (7) | 0.0046 (5) | −0.0034 (5) | −0.0200 (6) |
C3 | 0.0412 (6) | 0.0445 (6) | 0.0555 (7) | 0.0002 (5) | −0.0067 (5) | −0.0213 (6) |
C4 | 0.0376 (5) | 0.0343 (5) | 0.0334 (5) | 0.0002 (4) | −0.0050 (4) | −0.0008 (4) |
C5 | 0.0393 (6) | 0.0339 (5) | 0.0453 (6) | 0.0036 (4) | −0.0021 (5) | −0.0059 (5) |
C6 | 0.0425 (6) | 0.0324 (5) | 0.0450 (6) | −0.0012 (4) | −0.0047 (5) | −0.0089 (4) |
C7 | 0.0371 (6) | 0.0359 (5) | 0.0379 (5) | 0.0022 (4) | −0.0046 (4) | −0.0004 (4) |
C8 | 0.0409 (7) | 0.0507 (7) | 0.0786 (10) | 0.0058 (6) | −0.0136 (6) | −0.0133 (7) |
C9 | 0.0463 (7) | 0.0514 (8) | 0.0506 (7) | −0.0096 (5) | −0.0054 (6) | 0.0100 (5) |
O1—N2 | 1.4023 (13) | C4—C5 | 1.3903 (16) |
O1—H1 | 0.8200 | C4—C7 | 1.4640 (15) |
N1—C1 | 1.4777 (14) | C5—C6 | 1.3838 (17) |
N1—C8 | 1.4924 (17) | C5—H5 | 0.9300 |
N1—C9 | 1.4995 (16) | C6—H6 | 0.9300 |
N1—H1N | 0.908 (13) | C7—H7 | 0.9300 |
N2—C7 | 1.2698 (15) | C8—H8A | 0.9600 |
C1—C2 | 1.3796 (16) | C8—H8B | 0.9600 |
C1—C6 | 1.3842 (16) | C8—H8C | 0.9600 |
C2—C3 | 1.3827 (18) | C9—H9A | 0.9600 |
C2—H2 | 0.9300 | C9—H9B | 0.9600 |
C3—C4 | 1.3916 (17) | C9—H9C | 0.9600 |
C3—H3 | 0.9300 | ||
N2—O1—H1 | 109.5 | C6—C5—H5 | 119.6 |
C1—N1—C8 | 115.32 (9) | C4—C5—H5 | 119.6 |
C1—N1—C9 | 111.77 (9) | C5—C6—C1 | 119.30 (10) |
C8—N1—C9 | 110.08 (11) | C5—C6—H6 | 120.4 |
C1—N1—H1N | 106.8 (10) | C1—C6—H6 | 120.4 |
C8—N1—H1N | 106.9 (10) | N2—C7—C4 | 120.34 (11) |
C9—N1—H1N | 105.3 (10) | N2—C7—H7 | 119.8 |
C7—N2—O1 | 111.13 (10) | C4—C7—H7 | 119.8 |
C2—C1—C6 | 121.09 (11) | N1—C8—H8A | 109.5 |
C2—C1—N1 | 121.05 (10) | N1—C8—H8B | 109.5 |
C6—C1—N1 | 117.86 (10) | H8A—C8—H8B | 109.5 |
C1—C2—C3 | 119.09 (11) | N1—C8—H8C | 109.5 |
C1—C2—H2 | 120.5 | H8A—C8—H8C | 109.5 |
C3—C2—H2 | 120.5 | H8B—C8—H8C | 109.5 |
C2—C3—C4 | 121.06 (11) | N1—C9—H9A | 109.5 |
C2—C3—H3 | 119.5 | N1—C9—H9B | 109.5 |
C4—C3—H3 | 119.5 | H9A—C9—H9B | 109.5 |
C5—C4—C3 | 118.75 (11) | N1—C9—H9C | 109.5 |
C5—C4—C7 | 119.18 (10) | H9A—C9—H9C | 109.5 |
C3—C4—C7 | 122.05 (10) | H9B—C9—H9C | 109.5 |
C6—C5—C4 | 120.72 (11) | ||
C8—N1—C1—C2 | 14.77 (17) | C3—C4—C5—C6 | 0.22 (18) |
C9—N1—C1—C2 | −111.95 (13) | C7—C4—C5—C6 | −178.05 (11) |
C8—N1—C1—C6 | −164.17 (12) | C4—C5—C6—C1 | −0.43 (19) |
C9—N1—C1—C6 | 69.11 (14) | C2—C1—C6—C5 | 0.67 (19) |
C6—C1—C2—C3 | −0.7 (2) | N1—C1—C6—C5 | 179.61 (11) |
N1—C1—C2—C3 | −179.60 (12) | O1—N2—C7—C4 | −179.96 (10) |
C1—C2—C3—C4 | 0.5 (2) | C5—C4—C7—N2 | 177.52 (11) |
C2—C3—C4—C5 | −0.2 (2) | C3—C4—C7—N2 | −0.69 (18) |
C2—C3—C4—C7 | 177.96 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···Cl1i | 0.82 | 2.34 | 3.147 (1) | 167 |
N1—H1N···Cl1ii | 0.91 (1) | 2.14 (1) | 3.040 (1) | 173 (1) |
C6—H6···N2iii | 0.93 | 2.59 | 3.516 (2) | 173 |
C7—H7···Cl1iv | 0.93 | 2.81 | 3.697 (1) | 160 |
C9—H9B···Cl1v | 0.96 | 2.81 | 3.713 (2) | 158 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) x, y, z−1; (iii) −x+1, y−1/2, −z+1/2; (iv) −x+1, −y, −z+1; (v) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C9H13N2O+·Cl− |
Mr | 200.66 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 292 |
a, b, c (Å) | 11.2696 (10), 11.7093 (10), 7.6961 (7) |
β (°) | 90.108 (2) |
V (Å3) | 1015.57 (16) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.34 |
Crystal size (mm) | 0.24 × 0.20 × 0.19 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σigma(I)] reflections | 11453, 2405, 2240 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.660 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.093, 1.07 |
No. of reflections | 2405 |
No. of parameters | 125 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.23, −0.20 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···Cl1i | 0.82 | 2.34 | 3.147 (1) | 167 |
N1—H1N···Cl1ii | 0.91 (1) | 2.14 (1) | 3.040 (1) | 173 (1) |
C6—H6···N2iii | 0.93 | 2.59 | 3.516 (2) | 173 |
C7—H7···Cl1iv | 0.93 | 2.81 | 3.697 (1) | 160 |
C9—H9B···Cl1v | 0.96 | 2.81 | 3.713 (2) | 158 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) x, y, z−1; (iii) −x+1, y−1/2, −z+1/2; (iv) −x+1, −y, −z+1; (v) −x, −y, −z+1. |
Hydroxylamine derivatives possess anti-inflammatory and anti-allergic activities (Kataoka et al., 2002). The novel hydroxylamine derivative NG-094 suppresses polyglutamine protein toxicity in Caenorhabditis elegans (Haldimann et al., 2011). The benzaldehyde-modified starches and starch components have significantly higher water solubility than their native counterparts (Johnston et al., 2011). Benzaldehyde derivatives possess antibacterial (Zhang et al., 2011) and antitrypanasomal (Haraguchi et al., 2011) activities. In continuation of our work, we have undertaken the crystal structure determination of the present complex, and the results are presented here.
The X-ray study confirmed the molecular structure of the title compound as illustrated in Fig. 1. Atom H1N was located from a difference Fourier map and refined freely. The protonation on the N1 site of the cation is also confirmed from the C1—N1 bond distance of 1.4777 (14) Å in comparison with the C—N bond distance of 1.380 (4) Å observed in the crystal structure of the neutral α-p-dimethylaminobenzaldoxime (Bachechi & Zambonelli, 1972). The bond distance N2—C7 of 1.267 (2) Å confirms the double bond character. The cation is almost planar with a maximum deviation of -0.040 (1) Å for atom C3 and the two methyl carbon atoms C8 and C9 deviate by 0.389 (2) and -1.247 (1) Å, respectively, from this plane.
Cations and anions associate through intermolecular C—H···Cl hydrogen bonds. These two hydrogen bonds are run in opposite direction of the ab plane forming a helical shape arrangement (Fig. 2 and Table 1). Intermolecular O—H···Cl, N—H···Cl and C—H···N interactions are also observed in the crystal structure (Fig. 3). In addition, the molecules are also connected by C—H···π interactions, the H3 atom (bound to C3) is at 2.87 Å from the centroid Cg1i of the phenyl ring (symmetry code i = x, 1/2 - y, 1/2 + z), with a C3—H3···Cg1i angle of 135° and a C3···Cg1 distance of 3.589 (2) Å.