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The absolute structure for the title compound, which has five chiral centres has been determined in this analysis. The supra­molecular architecture comprises parallel zigzag chains formed through N—H...N and C—H...O hydrogen bonds, as well as intra­molecular C—H...O, C—H...N and C—H...π inter­actions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2056989016010872/zs2365sup1.cif
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2056989016010872/zs2365Isup2.hkl
Contains datablock I

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2056989016010872/zs2365Isup3.cml
Supplementary material

CCDC reference: 1490701

Key indicators

  • Single-crystal X-ray study
  • T = 293 K
  • Mean [sigma](C-C) = 0.010 Å
  • R factor = 0.053
  • wR factor = 0.135
  • Data-to-parameter ratio = 15.9

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT242_ALERT_2_C Low 'MainMol' Ueq as Compared to Neighbors of C20 Check PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds ............... 0.01 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported Hn1 .. O1 .. 2.66 Ang. PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 3 Report PLAT915_ALERT_3_C No Flack x Check Done: Low Friedel Pair Coverage 86 %
Alert level G PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 2 Note PLAT007_ALERT_5_G Number of Unrefined Donor-H Atoms .............. 1 Report PLAT172_ALERT_4_G The CIF-Embedded .res File Contains DFIX Records 1 Report PLAT180_ALERT_4_G Check Cell Rounding: # of Values Ending with 0 = 3 Note PLAT199_ALERT_1_G Reported _cell_measurement_temperature ..... (K) 293 Check PLAT200_ALERT_1_G Reported _diffrn_ambient_temperature ..... (K) 293 Check PLAT380_ALERT_4_G Incorrectly? Oriented X(sp2)-Methyl Moiety ..... C24 Check PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 1 Note PLAT791_ALERT_4_G The Model has Chirality at C10 (Chiral SPGR) R Verify PLAT791_ALERT_4_G The Model has Chirality at C12 (Chiral SPGR) S Verify PLAT791_ALERT_4_G The Model has Chirality at C14 (Chiral SPGR) S Verify PLAT791_ALERT_4_G The Model has Chirality at C16 (Chiral SPGR) R Verify PLAT791_ALERT_4_G The Model has Chirality at C19 (Chiral SPGR) S Verify PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 2 Note PLAT910_ALERT_3_G Missing # of FCF Reflection(s) Below Theta(Min) 3 Note PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density 1 Note
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 5 ALERT level C = Check. Ensure it is not caused by an omission or oversight 16 ALERT level G = General information/check it is not something unexpected 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 5 ALERT type 3 Indicator that the structure quality may be low 10 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
checkCIF publication errors
Alert level A PUBL024_ALERT_1_A The number of authors is greater than 5. Please specify the role of each of the co-authors for your paper.
1 ALERT level A = Data missing that is essential or data in wrong format 0 ALERT level G = General alerts. Data that may be required is missing

Computing details top

Data collection: CrysAlis PRO (Agilent, 2013); cell refinement: CrysAlis PRO (Agilent, 2013); data reduction: CrysAlis PRO (Agilent, 2013); program(s) used to solve structure: SIR2011 (Burla et al., 2012); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: ORTEPIII (Burnett & Johnson, 1996) and ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).

(1S,2S,2'R,3a'S,5R)-2'-[(5-Bromo-1H-indol-3-yl)methyl]-2-isopropyl-5,5'-dimethyldihydro-2'H-spiro[cyclohexane-1,6'-imidazo[1,5-b]isoxazol]-4'(5'H)-one top
Crystal data top
C24H32BrN3O2F(000) = 496
Mr = 474.43Dx = 1.328 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 10.2640 (5) ÅCell parameters from 8154 reflections
b = 9.6480 (5) Åθ = 1.0–27.9°
c = 12.0480 (5) ŵ = 1.76 mm1
β = 96.204 (5)°T = 293 K
V = 1186.09 (10) Å3Plate, colorless
Z = 20.46 × 0.39 × 0.11 mm
Data collection top
Oxford Diffraction Xcalibur Atlas Gemini Ultra CCD
diffractometer
4337 independent reflections
Radiation source: Enhance (Mo) X-ray source)2924 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.104
ω/2θ scansθmax = 26.0°, θmin = 2.7°
Absorption correction: multi-scan
(SCALEPACK; Otwinowski et al., 1997)
h = 1212
Tmin = 0.455, Tmax = 0.802k = 1111
10653 measured reflectionsl = 1314
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.053 w = 1/[σ2(Fo2) + (0.0631P)2]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.135(Δ/σ)max < 0.001
S = 0.97Δρmax = 0.31 e Å3
4337 reflectionsΔρmin = 0.51 e Å3
272 parametersAbsolute structure: Flack x determined using 1005 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
2 restraintsAbsolute structure parameter: 0.013 (13)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Br0.17985 (7)0.23216 (8)0.27079 (6)0.0716 (3)
O10.4307 (4)0.4046 (5)0.6482 (4)0.0455 (11)
N30.3297 (6)0.6276 (6)0.8208 (5)0.0559 (16)
O20.5063 (6)0.6393 (6)0.9554 (4)0.0728 (16)
N20.3578 (5)0.4065 (6)0.7471 (4)0.0419 (12)
N10.6516 (6)0.6022 (6)0.3324 (5)0.0521 (15)
C140.2644 (7)0.5267 (7)0.7427 (5)0.0447 (15)
C60.4147 (7)0.3475 (8)0.3841 (6)0.0472 (16)
H60.40070.28710.44180.057*
C90.6468 (6)0.4016 (8)0.5952 (5)0.0478 (16)
H9A0.73750.41530.62480.057*
H9B0.63170.30250.58850.057*
C10.3301 (7)0.3486 (8)0.2869 (6)0.0523 (18)
C110.5918 (7)0.4126 (9)0.7977 (6)0.0513 (18)
H11A0.61960.31640.80130.062*
H11B0.65940.46980.83720.062*
C100.5591 (6)0.4605 (7)0.6774 (5)0.0426 (15)
H100.55720.56190.67340.051*
C80.6248 (6)0.4659 (7)0.4806 (5)0.0439 (15)
C130.4388 (7)0.5769 (8)0.8831 (6)0.0523 (18)
C190.1319 (7)0.4750 (8)0.7834 (5)0.0485 (17)
H190.07740.55820.78540.058*
C50.5213 (6)0.4378 (7)0.3948 (5)0.0428 (15)
C120.4609 (6)0.4315 (8)0.8439 (5)0.0471 (16)
H120.45180.36480.90390.057*
C160.1585 (6)0.4977 (7)0.5389 (5)0.0472 (16)
H160.21120.41530.52750.057*
C150.2358 (7)0.5914 (7)0.6262 (6)0.0500 (17)
H15A0.31840.61590.59920.060*
H15B0.18670.67640.63280.060*
C70.6991 (6)0.5668 (8)0.4386 (6)0.0503 (17)
H70.77300.60640.47760.060*
C40.5407 (7)0.5268 (7)0.3039 (6)0.0459 (16)
C180.0585 (7)0.3816 (8)0.6964 (6)0.0544 (18)
H18A0.02410.35410.72200.065*
H18B0.10960.29830.68840.065*
C30.4561 (8)0.5248 (8)0.2046 (6)0.056 (2)
H30.47050.58280.14550.068*
C170.0316 (6)0.4521 (9)0.5829 (6)0.0574 (19)
H17A0.01460.38830.53020.069*
H17B0.02410.53220.58960.069*
C210.1702 (8)0.2603 (9)0.9120 (6)0.071 (2)
H21A0.24740.23880.87700.107*
H21B0.18330.23400.98920.107*
H21C0.09680.21050.87540.107*
C20.3522 (8)0.4357 (8)0.1965 (6)0.061 (2)
H20.29540.43240.13090.073*
C200.1432 (7)0.4168 (9)0.9030 (6)0.0554 (18)
H200.21680.46410.94570.066*
C230.1317 (8)0.5741 (9)0.4278 (6)0.068 (2)
H23A0.21330.60150.40220.102*
H23B0.08540.51390.37360.102*
H23C0.07960.65490.43760.102*
C220.0205 (10)0.4502 (13)0.9589 (8)0.097 (3)
H22A0.00320.54790.95350.145*
H22B0.05270.40010.92220.145*
H22C0.03380.42361.03610.145*
C240.2777 (9)0.7638 (8)0.8427 (8)0.081 (3)
H24A0.20150.78150.79120.121*
H24B0.25420.76680.91770.121*
H24C0.34310.83290.83380.121*
HN10.67580.66990.28850.07 (2)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Br0.0695 (5)0.0753 (5)0.0667 (5)0.0179 (5)0.0081 (3)0.0009 (5)
O10.042 (3)0.058 (3)0.036 (3)0.003 (2)0.0033 (19)0.000 (2)
N30.066 (4)0.049 (4)0.052 (4)0.006 (3)0.004 (3)0.008 (3)
O20.078 (4)0.092 (4)0.047 (3)0.029 (3)0.001 (3)0.015 (3)
N20.042 (3)0.053 (3)0.031 (3)0.002 (3)0.002 (2)0.001 (2)
N10.059 (4)0.049 (4)0.049 (4)0.007 (3)0.012 (3)0.004 (3)
C140.051 (4)0.046 (4)0.037 (4)0.000 (3)0.002 (3)0.003 (3)
C60.058 (4)0.048 (4)0.037 (4)0.004 (3)0.009 (3)0.005 (3)
C90.043 (4)0.056 (4)0.045 (4)0.012 (3)0.006 (3)0.011 (3)
C10.067 (5)0.047 (4)0.042 (4)0.001 (4)0.001 (3)0.007 (3)
C110.045 (4)0.070 (5)0.037 (4)0.003 (4)0.002 (3)0.007 (4)
C100.040 (3)0.049 (4)0.038 (4)0.006 (3)0.003 (3)0.000 (3)
C80.042 (3)0.049 (4)0.041 (4)0.000 (3)0.009 (3)0.001 (3)
C130.058 (4)0.062 (5)0.038 (4)0.013 (4)0.008 (3)0.001 (3)
C190.048 (4)0.052 (4)0.046 (4)0.009 (3)0.006 (3)0.002 (3)
C50.048 (4)0.043 (4)0.038 (4)0.004 (3)0.008 (3)0.003 (3)
C120.046 (4)0.060 (5)0.034 (3)0.009 (3)0.003 (3)0.003 (3)
C160.051 (4)0.044 (4)0.045 (4)0.006 (3)0.003 (3)0.004 (3)
C150.058 (4)0.037 (4)0.054 (5)0.008 (3)0.003 (3)0.008 (3)
C70.047 (4)0.054 (4)0.051 (4)0.005 (4)0.009 (3)0.004 (3)
C40.057 (4)0.038 (4)0.043 (4)0.001 (3)0.011 (3)0.003 (3)
C180.044 (4)0.067 (5)0.050 (4)0.002 (3)0.000 (3)0.003 (4)
C30.075 (5)0.055 (5)0.039 (4)0.003 (4)0.009 (4)0.003 (3)
C170.048 (4)0.069 (5)0.052 (4)0.003 (4)0.007 (3)0.001 (4)
C210.073 (5)0.085 (7)0.057 (5)0.006 (5)0.015 (4)0.015 (4)
C20.082 (5)0.061 (5)0.036 (4)0.007 (4)0.008 (3)0.000 (4)
C200.051 (4)0.072 (5)0.045 (4)0.002 (4)0.012 (3)0.002 (4)
C230.090 (6)0.065 (5)0.045 (4)0.011 (5)0.011 (4)0.006 (4)
C220.087 (6)0.139 (9)0.071 (6)0.021 (7)0.037 (5)0.009 (6)
C240.104 (6)0.063 (7)0.075 (6)0.002 (5)0.009 (5)0.021 (5)
Geometric parameters (Å, º) top
Br—C11.901 (7)C5—C41.423 (9)
O1—C101.432 (7)C12—H120.9800
O1—N21.475 (6)C16—C171.523 (10)
N3—C131.369 (10)C16—C231.526 (10)
N3—C241.453 (10)C16—C151.540 (10)
N3—C141.465 (9)C16—H160.9800
O2—C131.212 (9)C15—H15A0.9700
N2—C141.502 (9)C15—H15B0.9700
N2—C121.507 (8)C7—H70.9300
N1—C71.362 (9)C4—C31.401 (11)
N1—C41.362 (9)C18—C171.526 (10)
N1—HN10.8929C18—H18A0.9700
C14—C151.535 (9)C18—H18B0.9700
C14—C191.576 (10)C3—C21.365 (11)
C6—C11.381 (10)C3—H30.9300
C6—C51.394 (10)C17—H17A0.9700
C6—H60.9300C17—H17B0.9700
C9—C81.508 (9)C21—C201.537 (12)
C9—C101.519 (9)C21—H21A0.9600
C9—H9A0.9700C21—H21B0.9600
C9—H9B0.9700C21—H21C0.9600
C1—C21.413 (11)C2—H20.9300
C11—C121.519 (9)C20—C221.525 (10)
C11—C101.524 (9)C20—H200.9800
C11—H11A0.9700C23—H23A0.9600
C11—H11B0.9700C23—H23B0.9600
C10—H100.9800C23—H23C0.9600
C8—C71.368 (9)C22—H22A0.9600
C8—C51.426 (9)C22—H22B0.9600
C13—C121.506 (11)C22—H22C0.9600
C19—C181.519 (10)C24—H24A0.9600
C19—C201.540 (10)C24—H24B0.9600
C19—H190.9800C24—H24C0.9600
C10—O1—N2109.3 (4)C17—C16—H16108.6
C13—N3—C24121.2 (7)C23—C16—H16108.6
C13—N3—C14113.9 (6)C15—C16—H16108.6
C24—N3—C14124.5 (7)C14—C15—C16114.8 (5)
O1—N2—C14111.0 (5)C14—C15—H15A108.6
O1—N2—C12104.6 (4)C16—C15—H15A108.6
C14—N2—C12107.2 (5)C14—C15—H15B108.6
C7—N1—C4107.9 (6)C16—C15—H15B108.6
C7—N1—HN1130.2H15A—C15—H15B107.5
C4—N1—HN1121.3N1—C7—C8111.6 (6)
N3—C14—N2104.1 (5)N1—C7—H7124.2
N3—C14—C15110.2 (5)C8—C7—H7124.2
N2—C14—C15113.9 (5)N1—C4—C3130.3 (7)
N3—C14—C19111.1 (5)N1—C4—C5108.1 (6)
N2—C14—C19108.3 (5)C3—C4—C5121.6 (7)
C15—C14—C19109.1 (5)C19—C18—C17112.5 (6)
C1—C6—C5119.2 (6)C19—C18—H18A109.1
C1—C6—H6120.4C17—C18—H18A109.1
C5—C6—H6120.4C19—C18—H18B109.1
C8—C9—C10113.7 (5)C17—C18—H18B109.1
C8—C9—H9A108.8H18A—C18—H18B107.8
C10—C9—H9A108.8C2—C3—C4118.5 (7)
C8—C9—H9B108.8C2—C3—H3120.7
C10—C9—H9B108.8C4—C3—H3120.7
H9A—C9—H9B107.7C16—C17—C18111.2 (5)
C6—C1—C2121.4 (7)C16—C17—H17A109.4
C6—C1—Br120.7 (6)C18—C17—H17A109.4
C2—C1—Br117.9 (6)C16—C17—H17B109.4
C12—C11—C10101.5 (5)C18—C17—H17B109.4
C12—C11—H11A111.5H17A—C17—H17B108.0
C10—C11—H11A111.5C20—C21—H21A109.5
C12—C11—H11B111.5C20—C21—H21B109.5
C10—C11—H11B111.5H21A—C21—H21B109.5
H11A—C11—H11B109.3C20—C21—H21C109.5
O1—C10—C9107.0 (5)H21A—C21—H21C109.5
O1—C10—C11102.8 (5)H21B—C21—H21C109.5
C9—C10—C11114.9 (5)C3—C2—C1120.5 (7)
O1—C10—H10110.6C3—C2—H2119.7
C9—C10—H10110.6C1—C2—H2119.7
C11—C10—H10110.6C22—C20—C21109.1 (8)
C7—C8—C5105.6 (6)C22—C20—C19110.7 (7)
C7—C8—C9126.7 (6)C21—C20—C19114.7 (6)
C5—C8—C9127.7 (6)C22—C20—H20107.3
O2—C13—N3125.9 (8)C21—C20—H20107.3
O2—C13—C12126.4 (7)C19—C20—H20107.3
N3—C13—C12107.6 (6)C16—C23—H23A109.5
C18—C19—C20114.3 (6)C16—C23—H23B109.5
C18—C19—C14110.7 (6)H23A—C23—H23B109.5
C20—C19—C14115.3 (6)C16—C23—H23C109.5
C18—C19—H19105.2H23A—C23—H23C109.5
C20—C19—H19105.2H23B—C23—H23C109.5
C14—C19—H19105.2C20—C22—H22A109.5
C6—C5—C4118.7 (6)C20—C22—H22B109.5
C6—C5—C8134.6 (6)H22A—C22—H22B109.5
C4—C5—C8106.7 (6)C20—C22—H22C109.5
C13—C12—N2105.9 (6)H22A—C22—H22C109.5
C13—C12—C11113.3 (6)H22B—C22—H22C109.5
N2—C12—C11105.8 (5)N3—C24—H24A109.5
C13—C12—H12110.5N3—C24—H24B109.5
N2—C12—H12110.5H24A—C24—H24B109.5
C11—C12—H12110.5N3—C24—H24C109.5
C17—C16—C23111.4 (6)H24A—C24—H24C109.5
C17—C16—C15109.2 (6)H24B—C24—H24C109.5
C23—C16—C15110.3 (6)
C10—O1—N2—C1214.5 (6)C8—C5—C6—C1179.1 (7)
C10—O1—N2—C14100.9 (5)C4—C5—C8—C70.1 (7)
N2—O1—C10—C9155.8 (5)C4—C5—C8—C9178.3 (6)
N2—O1—C10—C1134.4 (6)C6—C5—C8—C7179.7 (8)
C7—N1—C4—C3179.9 (8)C6—C5—C8—C91.9 (13)
C7—N1—C4—C52.0 (8)N1—C7—C8—C51.2 (8)
C4—N1—C7—C82.0 (8)N1—C7—C8—C9179.6 (6)
O1—N2—C12—C1111.6 (7)C5—C8—C9—C1078.1 (9)
O1—N2—C12—C13109.0 (5)C7—C8—C9—C10100.1 (8)
C14—N2—C12—C11129.6 (6)C8—C9—C10—O174.7 (7)
C14—N2—C12—C139.0 (6)C8—C9—C10—C11171.8 (6)
O1—N2—C14—N3103.0 (5)O1—C10—C11—C1239.7 (7)
O1—N2—C14—C1517.2 (7)C9—C10—C11—C12155.6 (6)
O1—N2—C14—C19138.7 (5)C10—C11—C12—N231.3 (7)
C12—N2—C14—N310.8 (6)C10—C11—C12—C1384.4 (7)
C12—N2—C14—C15130.9 (6)N2—C12—C13—O2175.3 (7)
C12—N2—C14—C19107.6 (5)N2—C12—C13—N33.5 (7)
C14—N3—C13—O2177.5 (7)C11—C12—C13—O259.8 (10)
C14—N3—C13—C123.6 (8)C11—C12—C13—N3119.1 (6)
C24—N3—C13—O24.7 (12)N2—C14—C15—C1667.4 (8)
C24—N3—C13—C12176.5 (6)N3—C14—C15—C16176.0 (6)
C13—N3—C14—N29.2 (7)C19—C14—C15—C1653.7 (7)
C13—N3—C14—C15131.7 (6)N2—C14—C19—C1871.8 (7)
C13—N3—C14—C19107.2 (7)N2—C14—C19—C2059.8 (7)
C24—N3—C14—N2178.3 (6)N3—C14—C19—C18174.4 (6)
C24—N3—C14—C1555.8 (9)N3—C14—C19—C2054.0 (8)
C24—N3—C14—C1965.3 (8)C15—C14—C19—C1852.6 (7)
Br—C1—C2—C3177.9 (6)C15—C14—C19—C20175.8 (6)
C6—C1—C2—C32.2 (12)C14—C15—C16—C1755.4 (8)
Br—C1—C6—C5177.7 (5)C14—C15—C16—C23178.1 (6)
C2—C1—C6—C52.4 (11)C15—C16—C17—C1855.5 (8)
C1—C2—C3—C40.6 (12)C23—C16—C17—C18177.4 (6)
C2—C3—C4—N1178.3 (7)C16—C17—C18—C1958.6 (8)
C2—C3—C4—C50.7 (11)C17—C18—C19—C1456.6 (8)
N1—C4—C5—C6178.5 (6)C17—C18—C19—C20171.3 (6)
N1—C4—C5—C81.3 (8)C14—C19—C20—C2189.9 (8)
C3—C4—C5—C60.4 (10)C14—C19—C20—C22146.0 (7)
C3—C4—C5—C8179.4 (7)C18—C19—C20—C2140.0 (9)
C4—C5—C6—C11.1 (10)C18—C19—C20—C2284.1 (9)
Hydrogen-bond geometry (Å, º) top
Cg3 is the centroid of the N2/C12/C13/N3/C14 five-membered imidazolidinone ring.
D—H···AD—HH···AD···AD—H···A
N1—HN1···N2i0.892.343.087 (8)141
C3—H3···O2ii0.932.423.292 (9)156
C16—H16···O10.982.553.091 (8)115
C20—H20···N30.982.543.032 (10)111
C21—H21A···N20.962.603.236 (9)124
N1—HN1···O1i0.892.663.053 (8)108
C20—H20···Cg30.982.412.866 (8)104
Symmetry codes: (i) x+1, y+1/2, z+1; (ii) x, y, z1.
 

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