research papers
Effect of pressure on the
of salicylaldoxime-I, and the structure of salicylaldoxime-II at 5.93 GPaaSchool of Chemistry and Centre for Science at Extreme Conditions, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh EH9 3JJ, Scotland, bCambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, England, and cCCLRC, Daresbury Laboratory, Warrington, Cheshire WA4 4AD, England
*Correspondence e-mail: s.parsons@ed.ac.uk
The effect of pressure on the via π⋯π stacking contacts. Salicylaldoxime derivatives are used industrially as extractants for copper; the selectivity reflects the compatibility of the metal ion with the pseudo-macrocycle cavity size. On increasing the pressure to 5.28 GPa the size of the cavity was found to decrease by an amount comparable to the difference in hole sizes in the structures of the Cu2+ salicylaldoximato complex and its Ni2+ equivalent. On increasing the pressure to 5.93 GPa a new polymorph, salicylaldoxime-II, was obtained in a single-crystal to single-crystal PIXEL calculations show that the is driven in part by relief of intermolecular repulsions in the dimer-forming OH⋯O-bonded ring motif, and the ten-centre hydrogen-bonding ring motif of the phase I structure is replaced in phase II by a six-centre ring formed by oximic OH⋯N hydrogen bonds. The transition also relieves repulsions in the π⋯π stacking contacts. The intramolecular OH⋯N hydrogen bond of phase I is replaced in phase II by a intermolecular phenolic OH⋯O hydrogen bond, but the total interaction energy of the pairs of molecules connected by this new contact is very slightly repulsive because the electrostatic hydrogen-bond energy is cancelled by the repulsion term. The intra- to intermolecular hydrogen-bond conversion simply promotes efficient packing rather than contributing to the overall lattice energy.
of salicylaldoxime has been investigated. The ambient-pressure phase (salicylaldoxime-I) consists of pairs of molecules interacting through oximic OH⋯O hydrogen bonds; taken with phenolic OH⋯N intramolecular hydrogen bonds, these dimers form a pseudo-macrocycle bounded by an motif. The dimers interact principallyKeywords: salicylaldoxime; pressure dependence; phase transitions; hydrogen bonding.
1. Introduction
The use of high pressure as a probe for studying molecular crystal structures under non-ambient conditions is still relatively lightly explored compared with low-temperature studies. Recent studies of small organic molecules (Dawson et al., 2005; Moggach, Allan, Morrison et al., 2005; Moggach et al., 2006) have found that the primary effect of compression in these cases is to reduce the sizes of voids present in the ambient-pressure structure. Analysis of the distributions and sizes of voids in crystal structures at ambient and high pressures is therefore an important area of research in terms of understanding the effects of compression. The subject of the effect of pressure on molecular systems has been addressed in a number of recent reviews, for example Boldyreva (2003, 2004a,b), Katrusiak (2004) and Hemley & Dera (2000).
The presence of voids in a structure may also be of importance in the determination of chemical reactivity. Most of the voids in the cavities). One example of this phenomenon is 18-crown-6, which has a large cavity inside the ring of the molecule and is known to form complexes with metal ions such as Na+, K+ and Rb+. The type of complexation in these complexes is dependent on the size of the metal ion in relation to the crown ether cavity size. In the case of 18-crown-6 the macrocyclic cavity is best suited to the K+ cation, but it can also form complexes with smaller or larger cations by distorting the conformation of the molecule or by complexing the cation with two crown ether molecules in a `sandwich' arrangement (Gokel, 1991).
of a small organic compound will be between molecules, but some compounds also have intramolecular voids (usually referred to asSalicylaldoxime [Scheme (I)] forms a hydrogen-bonded dimer creating a pseudo-macrocyclic cavity in the middle of the hydrogen-bonded R-type ring motif [Scheme (IIa)] (Bernstein et al., 1995). Deprotonation of the phenol group enables salicylaldoxime to bind to a transition metal as a mono-anionic, bidentate ligand. A bis(salicylaldoxime) complex is stabilized by hydrogen bonding between the two bidentate ligands.
Salicylaldoxime is known to show a remarkable selectivity for complex formation of copper(II) above other metal ions as a result of the compatibility of the size of the cavity at the centre of the R motif and the ionic radius of Cu2+ (Smith et al., 2002). Salicylaldoximes bearing branched alkyl chains are used as solvent extractants to effect the `separation' and `concentration' operations in the hydrometallurgical recovery of copper, accounting for around 30% of annual production (Kordosky, 2002). The high affinity and selectivity of salicylaldoximes for Cu2+ is therefore of great commercial importance (Szymanowski, 1993).
The development of ligands suitable for the selective complexation of metal ions based on synthesizing derivatives to control cavity sizes in polydentate ligands is both time-consuming and costly (Tasker et al., 2004). As salicylaldoximes are predisposed to assemble to provide N2O22- cavities for metal ions, an attractive alternative strategy would be to control the size of the cavity using pressure, and in this paper we discuss the effect of pressure to 6 GPa on the of salicylaldoxime.
2. Experimental
2.1. Crystal growth
Salicylaldoxime (98%) was purchased from Acros (CAS number 94-67-7); it was then recrystallized by the slow evaporation of a concentrated hexane/chloroform solution. One small, colourless, block-shaped crystal was then taken directly from the recrystallized sample. The unit-cell dimensions of the crystal were determined at 150 K and ambient pressure to be monoclinic, a = 10.359 (3), b = 5.007 (1), c = 13.292 (3) Å, β = 112.14 (2)°. The structure of salicylaldoxime has previously been reported by Pfluger & Harlow (1973), and we refer to this phase as salicyladoxime-I. The same crystal was then loaded into a diamond–anvil cell.
2.2. High-pressure crystallography
High-pressure experiments were carried out using a Merrill–Bassett diamond–anvil cell (half-opening angle 40°), equipped with brilliant-cut diamonds with 600 µm culets and a tungsten gasket (Merrill & Bassett, 1974). A 1:1 mixture of n-pentane and isopentane was used as a hydrostatic medium; this mixture is volatile at room temperature, and the cell was cooled in dry ice prior to loading. A small ruby chip was also loaded into the cell so that the pressure could be monitored using the ruby fluorescence method (Piermarini et al., 1975). Diffraction data were collected on a Bruker–Nonius APEX-II diffractometer with silicon-monochromated synchrotron radiation (λ = 0.6889 Å) on Station 9.8 at the SRS, Daresbury Laboratory.
Data collection and processing procedures for the high-pressure experiments followed Dawson et al. (2004) and Moggach, Allan, Parsons et al. (2005). Integrations were carried out using the program SAINT (Bruker–Nonius, 2003), and absorption corrections with the programs SHADE (Parsons, 2004) and SADABS (Sheldrick, 2004). Data collections were taken in approximately 1.0 GPa steps from 0.75 GPa up to a final pressure of 5.93 GPa. Determination of the cell constants at 5.93 GPa showed that a single-crystal to single-crystal had occurred to a new polymorph, which we have designated salicylaldoxime-II. The degraded the crystal quality somewhat, and no attempt was made to study the effects of subsequent decompression.
In order to facilitate a comparison with the ambient-temperature/high-pressure results, diffraction data were also collected on salicylaldoxime-I at ambient pressure. Data were collected on a Bruker APEX diffractometer with graphite-monochromated Mo Kα radiation (λ = 0.71073 Å). The crystals were sensitive to radiation damage from the X-ray beam, so this data set was collected at 273 K. The data were integrated using SAINT and corrected for absorption with SADABS. The structure was solved using the program SIR92 (Altomare et al., 1994) and structure yielded a conventional R factor of 0.0564, giving structural parameters that are somewhat more precise than those determined by Pfluger & Harlow (1973).
Refinements of the compressed form of salicylaldoxime-I were carried out starting from the coordinates determined at ambient pressure. The structure of the new phase (salicylaldoxime-II) was solved by SIR92. Refinements were carried out against |F|2 using all data (CRYSTALS; Betteridge et al., 2003). Owing to the low completeness of the data sets, global rigid-bond and body restraints were applied to the anisotropic displacement parameters. The quality of the diffraction pattern deteriorated markedly after the transformation to salicylaldoxime-II, and no attempt was made to study this sample at still higher pressures. Displacement parameters in phase II were only modelled at the isotropic level; shift-limiting restraints were also applied to all parameters.
using the programH atoms attached to C atoms were placed geometrically and constrained to ride on their host C atoms. The hydroxyl H atoms (H1 and H5) in all cases were found using difference-Fourier maps. The positional parameters of atoms H1 and H5 were then refined subject to the restraint O—H = 0.820 (1) Å. Listings of crystal and .1
data are given in Table 1Crystal structures were visualized using the programs CAMERON (Watkin et al., 1993), MERCURY (Bruno et al., 2002) and DIAMOND (Brandenburg & Putz, 2005). Analyses were carried out using PLATON (Spek, 2004), as incorporated in the WinGX suite (Farrugia, 1999). Searches of the Cambridge Structural Database (CSD; Allen, 2002; Allen & Motherwell, 2002) utilized the program CONQUEST and version 5.27 of the database with updates up to January 2006.
Topological calculations of void distributions (Blatov & Shevchenko, 2003) were carried out with TOPOS-Pro (Blatov et al., 1995, 2000). Considerable simplification of the void distributions can be gained by clustering; voids were therefore clustered using what the program refers to as the `clustering' method with the `size' parameter specified as 0.5 (Blatov, 2005). Strain tensor calculations were carried out using a locally written program (STRAIN; Parsons, 2003), based on the discussion in Hazen & Finger (1982) and employing the JACOBI subroutine of Press et al. (1992). Equation-of-state calculations were carried out with EOSFIT (Angel, 2002).
The numbering scheme used [see Scheme (I)] is the same throughout the ambient-pressure and high-pressure data sets, including the phase II structure. The setting that was used for the salicylaldoxime-II structure was chosen to facilitate the comparison with salicylaldoxime-I.
2.3. PIXEL calculations
The final crystal structures obtained were used to calculate the molecular electron density at each pressure by standard quantum chemical methods using the program GAUSSIAN98 (Frisch et al., 1998) at the MP2/6-31G** level of theory. H-atom distances were set to standard neutron values (C—H = 1.083 and O—H = 0.983 Å). The electron-density model of the molecule was then analysed using the program package OPiX (Gavezzotti, 2005), which allowed the calculation of dimer and lattice energies. Lattice energy calculations employed a cluster of molecules of radius 18 Å. Calculations were also carried out for pairs of molecules identified in the lattice calculation as being energetically the most significant (i.e. with a magnitude > 2.5 kJ mol−1). The output from these calculations yields a total energy and a breakdown into its electrostatic, polarization, dispersion and repulsion components (Dunitz & Gavezzotti, 2005).
3. Results
3.1. The structure of salicylaldoxime-I at ambient pressure
Prior to this work two crystalline forms of salicylaldoxime had been characterized. The structure of salicylaldoxime-I was determined by Pfluger & Harlow (1973); salicylaldoxime-III was initially studied by Merritt & Schroeder (1956), but its structure was determined only recently (Wood et al., 2006). The of salicylaldoxime-I has one molecule in the in the P21/n. The molecule as a whole is planar; a least-squares mean plane calculated using the C, N and O atoms shows that the average deviation of these atoms from the plane is 0.009 Å.
The molecules form intramolecular O5—H5⋯N2 hydrogen bonds [O5⋯N2 = 2.621 (2) Å] and intermolecular O1—H1⋯O5 hydrogen bonds [O1⋯O5 = 2.793 (2) Å]. The latter form a dimer across an inversion centre (Fig. 1a), yielding a ring motif for which the graph-set descriptor is (Bernstein et al., 1995). The two molecules in the dimer are almost coplanar, with a distance of only 0.28 Å between the two least-squares planes. The H atom (H1) that forms a hydrogen bond across the dimer lies 0.09 (2) Å from the mean plane of the molecule.
The molecule has three hydrogen-bond acceptors (O1, N2 and O5) and only two conventional donors (O1/H1 and O5/H5), and there is therefore an unfulfilled hydrogen-bond acceptor (based on O1). Atom O1 forms a very weak interdimer C6—H6⋯O1 interaction with a neighbouring molecule [C6⋯O1 = 3.404(2) Å, PIXEL energy = −2.7 kJ mol−1 (Fig. 2a)]. Successive C6—H6⋯O1 interactions related by the n-glide build primary-level C(7) chains, producing `slabs' which lie in the (10) plane (Fig. 3a). There are no hydrogen-bond interactions between the slabs.
Within the slabs, dimers interact with other dimers through π⋯π stacking (Fig. 4). The inter-plane separations are 3.07 and 3.40 Å between the reference molecule and the molecules labelled 2 and 3, respectively. We show below that these stacking interactions are in fact more energetically significant than the CH⋯O contacts. The centroids of the phenyl rings are off-set from each other by 3.71 and 5.25 Å for these two interactions along the horizontal direction in Fig. 4, and the stacking interaction appears to be between and phenyl rings.
3.2. The response of salicylaldoxime-I to pressure up to 5.28 GPa
The response of the salicylaldoxime-I structure to hydrostatic pressure is anisotropic (Fig. 5); the greatest reduction occurs in the c-axis length (13.7% at 5.28 GPa relative to ambient pressure), while the a and b axes reduce by 8.1 and 1.9%, respectively. The direction of greatest lies approximately along the reciprocal axis direction (10); the principal axis with the second largest eigenvalue is approximately along (601). These directions are shown in Fig. 6. One eigenvector of the strain tensor must correspond to the b direction by symmetry, and this is the direction of least compression in the structure.
The bulk modulus (K0), refined for a Birch–Murnaghan equation-of-state (Birch, 1947; Angel, 2000) to second order, is 13.3 (4) GPa. The data set used to calculate this quantity is admittedly rather limited, and the values of V0 and K′ were fixed at 649.3 Å3 and 4, respectively. Molecular solids typically have K0 < 30 GPa (Angel, 2004); Slebodnick et al. (2004) quote the following K0 values which are useful for comparison: Ru3(CO)12 (6.6 GPa), NaCl (25 GPa), quartz (37 GPa), ceramics (50–300 GPa) and diamond (440 GPa).
The molecule remains planar at 5.28 GPa, and the distance between the least-squares planes of the molecules in the dimer remains essentially constant (0.27 Å at 5.28 GPa).
The variation of non-covalent interaction parameters in salicylaldoxime-I between ambient pressure and 5.28 GPa is presented in Table 2. The least compressible interaction is the intramolecular OH⋯N hydrogen bond from O5/H5 to N2 (O5⋯N2 changes by 2.2%). The second conventional hydrogen bond (O1/H1⋯O5) is significantly more compressible because of the greater spatial flexibility of the molecules; O1⋯O5 decreases by 6.5% to a distance of 2.612 (6) Å. The OH⋯O angle remains approximately constant, and so the shape of the hydrogen-bonding ring is essentially unchanged (cf. Figs. 1a and 1b). The most compressible hydrogen-bonding interaction is C6—H6⋯O1 which decreases by 9.6% to 3.077 (9) Å. The CHO angle decreases steadily with the application of pressure from 154 to 146° at 5.28 GPa as the molecules shift with respect to each other in order to pack more effectively (see Figs. 1 and 2).
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The π⋯π stacking interaction distances, defined as the perpendicular distance between the least-squares mean plane of one phenyl ring and the centroid of another, are also compressed. The distance for interaction 3 in Fig. 4 decreases by 14.8% from 3.40 Å at ambient pressure to 2.90 Å at 5.28 GPa, and the distance for interaction 2 decreases by 8.3% from 3.07 to 2.82 Å at 5.28 GPa. The offset distances for interactions 2 and 3 change from 5.25 to 5.01 Å and from 3.71 to 3.99 Å, respectively, as the molecules slide across each other.
3.3. Salicylaldoxime-II at 5.93 GPa
The observation that the transition from phase I to II proceeds from one single crystal to another suggests that the local topologies of the phase I and II structures are similar to each other. The space-group symmetry is retained, and the cell volume also follows a fairly smooth curve from the ambient-pressure structure through the transition into phase II at 5.93 GPa (Fig. 5).
The ring motif found in the phase I structure is no longer present in salicylaldoxime-II. At 5.93 GPa atom H1 forms an O1—H1⋯N2 hydrogen bond to N2 instead of O5 [O1⋯N2 = 2.622 (2) Å]. The new OH⋯N intra-dimer interaction and its inversion-related equivalent form an R22 (6 ) ring motif in the phase II structure (Scheme 2b and Fig. 1c). This shifting of the molecules in the dimer and formation of an R22 (6 ) instead of an ring allows the molecules to approach more closely. The molecules themselves remain planar in the phase II structure; moreover, the two molecules in the dimer are almost exactly coplanar, with a distance of only 0.02 Å between their respective least-squares planes (calculated for each using the C, N and O positions only).
The intramolecular O5—H5⋯N2 hydrogen bonds found in the phase I structure are also broken and the presence of H1 forming a strong interaction with N2 forces H5 to flip out to the side of the dimer [see Scheme (II)]. This OH group now forms an O5—H5⋯O1 hydrogen bond to O1 [O5⋯O1 = 2.582 (14) Å] on a neighbouring molecule in a different dimer, which is related via the n-glide. These OH⋯O interactions form C(7) chains which run in the direction of the n-glide replacing the CH⋯O C(7) chains in the phase I structure. The chains are then linked to each other by the hydrogen bonds across the dimer forming slabs which lie in the (10) plane, just as in the ambient pressure structure. There are no hydrogen-bond interactions between the slabs (see Fig. 3c).
The π⋯π stacking interaction motif found in the salicylaldoxime-I structure is retained in the phase II structure. In the new phase there is still an interaction similar to interaction 3 in Fig. 4, but now the inter-plane separation has increased from 2.90 Å at 5.28 GPa to 3.06 Å at 5.93 GPa and the offset has increased to 4.90 Å. The reference molecule also forms an interaction similar to 2 in Fig. 4, but now the inter-plane separation is 2.91 Å and the offset is 4.87 Å at 5.93 GPa. In the phase II structure the reference molecule phenyl ring is approximately equidistant from the centroids of both phenyl rings in the stacking interaction.
4. Discussion
4.1. Void analysis of the phase I structure
The effect of pressure can be understood in terms of distributions of voids which exist in a structure prior to compression. The voids tend to close up at high pressure, and it is often found that the direction of greatest compressibility in a crystal is directly related to the position and orientation of the largest voids in the structure.
In the salicylaldoxime-I structure it is possible to analyse the distribution and size of structural voids using a Voronoi–Dirichlet analysis as shown by Blatov & Shevchenko (2003) and by Moggach, Allan, Parsons et al. (2005). The largest void region (volume 16.77 Å3) consists of three void conglomerates which lie in between the slabs of the structure. Figs. 7(a) and (b) show space-filling plots of the salicylaldoxime-I structure, at ambient pressure and 5.28 GPa, respectively. It is apparent that there is a sizable void between the slabs at ambient pressure which closes up significantly at 5.28 GPa. The direction of movement of the molecules that closes the gap between the slabs is also in the direction of greatest linear strain.
The second largest cluster of voids, which has a volume of 9.50 Å3, lies between molecules related by the n-glide, and this void can be seen in the structures at ambient pressure and 5.28 GPa in Figs. 7(c) and (d). The gap relates to the relatively long C6—H6⋯O1 weak hydrogen-bond interaction. The vector between C6 and O1 corresponds approximately to the second direction of greatest strain in the structure (the angle between the vectors is 12°).
The void in the middle of the hydrogen-bonded dimer is formed by relatively strong hydrogen bonds, and it would not be expected to compress as much as voids in the vicinity of more weakly interacting molecules. Nevertheless, the dimer cavity is affected by the application of high pressure. The size of the cavity can be analysed by measuring the mean distance of the donor atoms from the centroid of the dimer. This distance decreases steadily with pressure from 2.0048 (15) to 1.935 (4) Å at 5.28 GPa, as shown in Fig. 8. Smith et al. (2002) showed that the cavity size is 1.93 (1) Å in the Cu2+ salicylaldoxime complex, whereas in the corresponding Ni2+ complex it is 1.864 (1) Å, a change of 0.066 Å. Pressure affects the cavity size by a similar amount. If the size of the cavity can be modified by an amount comparable to the difference in sizes in the different metal complexes, then it is possible that compression may affect the complexation properties of the compound.
Voronoi–Dirichlet analysis shows that the voids present in salicylaldoxime-II are much smaller than those in phase I. There are still small voids between the slabs in the structure, although the majority are distributed between the molecules related by a unit-cell translation in the b direction.
4.2. Hydrogen bonding and π⋯π stacking in salicylaldoxime-I
The three different hydrogen bonds in salicylaldoxime-I do not compress uniformly. The largest compressibility is witnessed for C6—H6⋯O1, which is the longest hydrogen bond in the structure. Our PIXEL calculations (see below) show that this interaction contributes rather little to the lattice energy at ambient or high pressure, and its distance can be varied without incurring a significant energy penalty. The least compressible hydrogen bond is the intramolecular O5—H5⋯N2 interaction, which only decreases by a small amount (2.2%) because of the conformational inflexibility of the molecule.
The compression of the intermolecular O1—H1⋯O5 hydrogen bond is not restricted by the rac-2,3:6,7-dibenzobicyclo(3.3.1)nona-2,6-diene-4,8-dione dioxime methanol solvate, CSD refcode WUHGEL01; Levkin et al., 2003]. The O⋯O distance in salicylaldoxime at 5.28 GPa [2.612 (6) Å] is thus near the lower limit observed for such interactions.
and its compressibility is higher (6.5%) than that of the O5—H5⋯N2 bond. A search of the CSD revealed the shortest O⋯O distance in C=NOH⋯OHC-containing systems to be 2.596 Å [forThe compression of π⋯π stacking interactions with hydrostatic pressure has not been extensively studied. Analysis of aromatic stacking interactions in the CSD shows that the minimum stacking distance between phenyl rings is ca 2.9 Å. At 5.28 GPa the stacking distances for interactions 2 and 3 (see Fig. 4) are 2.82 and 2.90 Å, respectively. As in the case of the O1—H1⋯O5 interaction, therefore, the π⋯π stacking in salicylaldoxime-I at 5.28 GPa is very close to the lower limit of similar interactions found at ambient pressure. The to salicylaldoxime-II allows the π⋯π stacking distances to increase (inter-planar distances = 2.91 and 3.05 Å), thus reducing the repulsion terms.
Previous compression studies on small organic molecules that exhibit hydrogen bonding, such as glycine (Dawson et al., 2005), L-serine (Moggach, Allan, Morrison et al., 2005) and L-cysteine (Moggach et al., 2006), have shown that the application of hydrostatic pressure (below about 10 GPa) will not decrease the length of a hydrogen bond or other interaction to lower than can be found for similar types of contact in ambient-pressure structures. Once a contact reaches its lower limit a occurs. The salicylaldoxime-I structure at 5.28 GPa has reached a point where one hydrogen bond and the π⋯π stacking interactions have contracted to near their lower distance limits. Further compression of the structure and the reduction of the void found in the middle of the ring can only occur through a and so above 5.28 GPa salicylaldoxime-II is formed.
The hydrogen-bonding pattern in salicylaldoxime-II is quite different from the ambient phase (Figs. 1 and 2). The intramolecular O5—H5⋯N2 hydrogen bond is broken in favour of a new intermolecular O5—H5⋯O1 interaction, while the dimer-forming hydrogen bond (O1—H1⋯O5) is also broken in order to create a smaller ring without a cavity through a new O1—H1⋯N2 contact. Overall this yields a more compact structure, although the data in Table 3 and CSD searches show that the new hydrogen bonds are still near the lower limit for their contact types. However, the changes that occur in the distances characterizing the π⋯π interactions before and after the suggest that strain is relieved in this region of the structure.
4.3. PIXEL analysis
In the foregoing discussion we have presented an analysis of the changes that occur in the GAUSSIAN. This electron-density model is then placed in a and divided into pixels of electron density. Each energy term is obtained by summing over energies calculated between pairs of pixels in neighbouring molecules. Details on the PIXEL method have been given by Dunitz & Gavezzotti (2005) and Gavezzotti (2005).
of salicylaldoxime based on intermolecular distances. The PIXEL procedure, which has been developed recently by Gavezzotti, enables further insight to be gained by calculation of intermolecular interaction energies. The method also enables these energies to be broken down into electrostatic, polarization, dispersion and repulsion contributions. In a PIXEL calculation the electron density in an isolated molecule is first calculated using a quantum mechanical package such asThe lattice energies and a breakdown of the energies into component coulombic, polarization, dispersion and repulsion terms for each pressure were calculated and are shown in Table 4. The overall lattice energy becomes more positive as pressure is increased; this trend is due to the steady increase in the repulsion term as the molecules are pushed closer together. The between 5.28 and 5.93 GPa results in a considerable decrease in the overall lattice energy. By extrapolation of the trend established up to 5.28 GPa we estimate that salicylaldoxime-II is more stable than salicylaldoxime-I by approximately 25 kJ mol−1 at 5.93 GPa. The energy difference is due to significant decreases in the coulombic and polarization terms, which outweigh the increase in repulsion.
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Seven pairs of molecules have interaction energies greater than 2.5 kJ mol−1. These pairs, shown in Fig. 9, have been labelled 1–7 in descending order of their total energies at ambient pressure. The total energies of the pairs at each pressure up to 5.28 GPa are also given in Table 5. The strongest interaction (1) corresponds to the O1—H1⋯O5 hydrogen-bonded dimer across the inversion centre; this interaction is dominated by the coulombic term, as expected for a hydrogen bond. It continues to be the most important interaction with increasing pressure. The next two strongest interactions (2 and 3) are the π⋯π stacking interactions between the reference molecule and two salicylaldoxime units forming a hydrogen-bonded dimer. Each interaction has an energy in the region of 8–9 kJ mol−1, with a large dispersion component. Interactions 4, 5 and 6 would all be overlooked in a conventional analysis focusing on hydrogen bonding, but each has an overall attractive interaction, amounting to between 4 and 7 kJ mol−1. These interactions are an H⋯H contact, an offset CH⋯π interaction and an O⋯O contact, respectively. Interaction 7 corresponds to the C6—H6⋯O1 hydrogen bond discussed above. It seems that this `weak hydrogen-bonding' interaction contributes very little to the overall lattice energy, and has more contribution from the dispersion component than the coulombic component.
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The data from structures at increasing pressures show that each interaction becomes weaker as a result of the increasing repulsion terms. The responses of the interactions to hydrostatic pressure are by no means uniform, and Fig. 10 shows a graph of the total interaction energies for each of the seven principal interactions against the distance between the molecular centroids of the two molecules involved in the interaction. The data shown in Fig. 10 were also calculated using the Gavezzotti force-field [available in the program RPLUTO (Motherwell, 2002)] yielding qualitatively similar results.
Interactions 2, 4, 5, 6 and 7 are relatively unaffected by the compression. The interactions between these pairs of molecules would therefore seem to be very soft and not influential in the forcing of the π⋯π stacking distances. These results also suggest that the π⋯π interactions become strongly repulsive upon shortening and would appear to be very important in both the phase I structure and the to salicylaldoxime-II.
In contrast, the curves for interactions 1 and 3 are much steeper (note the distinct difference between the two stacking interactions 2 and 3). These results are consistent with the suggestion made above that the occurs in order to avoid further shortening of the OH⋯O hydrogen bond andThe energies of interactions in the phase II structure were also analysed using the PIXEL method. The most energetically stabilizing interaction, as expected, is the R22 (6 ) hydrogen-bonded ring. The pair of molecules involved has a total interaction energy of −16 kJ mol−1, which is comparable to that of the phase I dimer interaction energy at 5.28 GPa. Other significant interactions include π⋯π interactions similar to those found in the phase I structure, which have total interaction energies of −5.5 and −4.3 kJ mol−1.
The hydrogen bond O5—H5⋯O1, which was formed by conversion of an intramolecular hydrogen bond into an intermolecular hydrogen bond, is found to have a large attractive coulombic term (−35.6 kJ mol−1), but is actually not an attractive interaction overall (Etot = +1 kJ mol−1) owing to the high value for the repulsion term (57.6 kJ mol−1). It seems that the intra- to intermolecular hydrogen-bond conversion has allowed a pair of molecules to approach one another in order to pack more efficiently.
5. Conclusions
We have described here the effects of the application of hydrostatic pressure on the structure of salicylaldoxime. The principal effects of pressure, up to 5.28 GPa, on the phase I structure are to close up the voids present in the ambient pressure structure by shortening the intermolecular interactions and moving the non-hydrogen-bonding slabs closer together. The only void in the ambient-pressure structure that is still visible in a space-filling plot at 5.28 GPa is in the middle of the hydrogen-bonding ring which binds the salicylaldoxime molecules into dimers.
The pseudo-macrocyclic cavity in the salicylaldoxime dimer has been shown to decrease in size steadily with the application of hydrostatic pressure. This contraction of the cavity size is comparable to the difference in the hole sizes in the copper and nickel salicylaldoxime complex structures. The results suggest that it may be possible to tune the metal-complex formation selectivity of the salicylaldoximes using high pressure.
The intermolecular hydrogen bonds and π⋯π interactions in the structure are compressed at 5.28 GPa to the lower limits of similar contacts at ambient pressure found in a search of the CSD. PIXEL calculations show a concomitant sharp increase in the repulsion energy of these interactions. Phase I is stable up to 5.28 GPa, but beyond this pressure the structure transforms to a new polymorph – salicylaldoxime-II. The phase II structure breaks the hydrogen-bonded ring in favour of an R22 (6 ) ring, which only has two hydrogen bonds, in order to improve the packing of the molecules. A CH⋯O interaction is also replaced by an OH⋯O hydrogen bond; overall this interaction is actually very slightly repulsive, but the intra- to intermolecular hydrogen-bond conversion enables a pair of molecules to approach one another in order to promote more efficient packing.
Supporting information
10.1107/S0108768106031752/so5004sup1.cif
contains datablocks 273K, 0_75GPa, 2_37GPa, 3_46GPa, 4_55GPa, 5_28GPa, 5_93GPa. DOI:Structure factors: contains datablock 273K. DOI: 10.1107/S0108768106031752/so5004273Ksup2.hkl
Structure factors: contains datablock 0_75GPa. DOI: 10.1107/S0108768106031752/so50040_75GPasup3.hkl
Structure factors: contains datablock 2_37GPa. DOI: 10.1107/S0108768106031752/so50042_37GPasup4.hkl
Structure factors: contains datablock 3_46GPa. DOI: 10.1107/S0108768106031752/so50043_46GPasup5.hkl
Structure factors: contains datablock 4_55GPa. DOI: 10.1107/S0108768106031752/so50044_55GPasup6.hkl
Structure factors: contains datablock 5_28GPa. DOI: 10.1107/S0108768106031752/so50045_28GPasup7.hkl
Structure factors: contains datablock 5_93GPa. DOI: 10.1107/S0108768106031752/so50045_93GPasup8.hkl
For all compounds, data collection: APEX-II (Bruker-Nonius, 2000); cell
SAINT; data reduction: SAINT (Bruker-Nonius, 2003); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: CAMERON (Watkin et al., 1996); software used to prepare material for publication: CRYSTALS (Betteridge et al., 2003).C7H7NO2 | F(000) = 288 |
Mr = 137.14 | Dx = 1.403 Mg m−3 |
Monoclinic, P21/n | Melting point = 59–61 K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 10.346 (4) Å | Cell parameters from 930 reflections |
b = 5.0294 (17) Å | θ = 3–25° |
c = 13.478 (5) Å | µ = 0.10 mm−1 |
β = 112.21 (2)° | T = 273 K |
V = 649.3 (4) Å3 | Block, colourless |
Z = 4 | 0.26 × 0.10 × 0.10 mm |
Bruker Apex CCD diffractometer | 1019 reflections with I > 2.00u(I) |
Graphite monochromator | Rint = 0.047 |
ω scans | θmax = 30.7°, θmin = 2.1° |
Absorption correction: multi-scan SADABS version 2004/1 | h = −14→14 |
Tmin = 0.79, Tmax = 0.99 | k = −7→7 |
6424 measured reflections | l = −18→19 |
1982 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.175 | w = 1/[σ2(F2) + ( 0.09P)2 + 0.04P] where P = (max(Fo2,0) + 2Fc2)/3 |
S = 0.92 | (Δ/σ)max = 0.000208 |
1982 reflections | Δρmax = 0.25 e Å−3 |
97 parameters | Δρmin = −0.23 e Å−3 |
84 restraints |
C7H7NO2 | V = 649.3 (4) Å3 |
Mr = 137.14 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.346 (4) Å | µ = 0.10 mm−1 |
b = 5.0294 (17) Å | T = 273 K |
c = 13.478 (5) Å | 0.26 × 0.10 × 0.10 mm |
β = 112.21 (2)° |
Bruker Apex CCD diffractometer | 1982 independent reflections |
Absorption correction: multi-scan SADABS version 2004/1 | 1019 reflections with I > 2.00u(I) |
Tmin = 0.79, Tmax = 0.99 | Rint = 0.047 |
6424 measured reflections |
R[F2 > 2σ(F2)] = 0.056 | 84 restraints |
wR(F2) = 0.175 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.92 | Δρmax = 0.25 e Å−3 |
1982 reflections | Δρmin = −0.23 e Å−3 |
97 parameters |
Refinement. The H atoms on carbon atoms (H3, H6, H7, H8, H9) were placed geometrically, then refined subject to geometrical restraints and finally allowed to ride on the host carbon. The H atoms on O1 and O5 were found in a fourier difference map and then refined subject to an O—H distance restraint of 0.82 Angstroms. Used global vibration and thermal similarity restraints. 731_ALERT_1_A Bond Calc 0.82 (2), Rep 0.8201 (10) ······ 9.90 su-Rat O1 –H1 1.555 1.555 731_ALERT_1_A Bond Calc 0.820 (19), Rep 0.8200 (10) ······ 9.90 su-Rat O5 –H5 1.555 1.555 These differences in the sus are due to the restraints applied to the O—H bonds for O1—H1 and O5—H5. The values calculated for bond sus by the cif check do not include the full variance/covariance matrix, whereas the values calculated by CRYSTALS do. 061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ············. 0.81 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. The larger than expected range of transmission is probably due to the absorption effects of the Merrill-Bassett diamond-anvil cell. ============================================================================== Resolution & Completeness Statistics (Cumulative) ============================================================================== Theta sin(th)/Lambda Complete Expected Measured Missing —————————————————————————— 20.82 0.500 1.000 679 679 0 23.01 0.550 1.000 908 908 0 25.24 0.600 1.000 1166 1166 0 ———————————————————— ACTA Min. Res. – 27.51 0.650 0.999 1491 1490 1 29.84 0.700 0.996 1857 1850 7 32.21 0.750 0.986 2011 1982 29 |
x | y | z | Uiso*/Ueq | ||
O1 | 0.73977 (12) | 1.0210 (3) | 0.68075 (10) | 0.0601 | |
N2 | 0.68807 (13) | 0.8699 (3) | 0.58726 (10) | 0.0470 | |
C3 | 0.77347 (16) | 0.6962 (4) | 0.58178 (13) | 0.0481 | |
C4 | 0.74142 (16) | 0.5191 (3) | 0.49063 (13) | 0.0438 | |
C5 | 0.61060 (16) | 0.5212 (3) | 0.40569 (13) | 0.0439 | |
O5 | 0.50907 (12) | 0.6917 (3) | 0.40416 (10) | 0.0553 | |
C6 | 0.58318 (18) | 0.3443 (4) | 0.32144 (15) | 0.0532 | |
C7 | 0.6832 (2) | 0.1697 (4) | 0.31882 (16) | 0.0575 | |
C8 | 0.81361 (19) | 0.1673 (4) | 0.40143 (16) | 0.0579 | |
C9 | 0.84057 (17) | 0.3388 (4) | 0.48613 (15) | 0.0534 | |
H3 | 0.8633 | 0.6823 | 0.6391 | 0.0648* | |
H6 | 0.4943 | 0.3439 | 0.2669 | 0.0734* | |
H7 | 0.6697 | 0.0489 | 0.2601 | 0.0812* | |
H8 | 0.8827 | 0.0422 | 0.3992 | 0.0826* | |
H9 | 0.9324 | 0.3426 | 0.5430 | 0.0738* | |
H1 | 0.6780 (19) | 1.131 (4) | 0.672 (2) | 0.1005* | |
H5 | 0.536 (2) | 0.793 (4) | 0.4556 (14) | 0.0949* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0568 (7) | 0.0641 (9) | 0.0412 (7) | 0.0065 (6) | −0.0022 (5) | −0.0110 (6) |
N2 | 0.0465 (7) | 0.0496 (8) | 0.0366 (7) | −0.0010 (6) | 0.0062 (5) | −0.0030 (6) |
C3 | 0.0415 (8) | 0.0530 (10) | 0.0418 (8) | 0.0023 (7) | 0.0067 (6) | 0.0031 (7) |
C4 | 0.0423 (7) | 0.0423 (8) | 0.0439 (8) | −0.0008 (6) | 0.0131 (6) | 0.0068 (6) |
C5 | 0.0424 (7) | 0.0411 (8) | 0.0459 (9) | 0.0026 (6) | 0.0141 (6) | 0.0038 (6) |
O5 | 0.0449 (6) | 0.0573 (8) | 0.0498 (7) | 0.0096 (5) | 0.0023 (5) | −0.0092 (6) |
C6 | 0.0531 (9) | 0.0523 (10) | 0.0494 (9) | −0.0022 (7) | 0.0139 (8) | −0.0034 (7) |
C7 | 0.0697 (10) | 0.0501 (11) | 0.0556 (10) | 0.0010 (8) | 0.0269 (8) | −0.0016 (8) |
C8 | 0.0613 (10) | 0.0525 (11) | 0.0648 (11) | 0.0136 (9) | 0.0293 (8) | 0.0084 (8) |
C9 | 0.0478 (9) | 0.0545 (11) | 0.0559 (10) | 0.0079 (8) | 0.0173 (8) | 0.0094 (8) |
O1—N2 | 1.3935 (18) | O5—H5 | 0.8200 (10) |
O1—H1 | 0.8201 (10) | C6—C7 | 1.367 (2) |
N2—C3 | 1.264 (2) | C6—H6 | 0.935 |
C3—C4 | 1.451 (2) | C7—C8 | 1.387 (3) |
C3—H3 | 0.960 | C7—H7 | 0.965 |
C4—C5 | 1.404 (2) | C8—C9 | 1.373 (3) |
C4—C9 | 1.388 (2) | C8—H8 | 0.961 |
C5—O5 | 1.3502 (19) | C9—H9 | 0.970 |
C5—C6 | 1.385 (2) | ||
N2—O1—H1 | 103 (2) | C5—C6—C7 | 120.75 (17) |
O1—N2—C3 | 113.07 (13) | C5—C6—H6 | 118.8 |
N2—C3—C4 | 122.18 (14) | C7—C6—H6 | 120.5 |
N2—C3—H3 | 119.2 | C6—C7—C8 | 120.05 (18) |
C4—C3—H3 | 118.6 | C6—C7—H7 | 123.3 |
C3—C4—C5 | 121.82 (15) | C8—C7—H7 | 116.6 |
C3—C4—C9 | 120.15 (15) | C7—C8—C9 | 119.48 (16) |
C5—C4—C9 | 118.02 (16) | C7—C8—H8 | 119.3 |
C4—C5—O5 | 121.45 (15) | C9—C8—H8 | 121.2 |
C4—C5—C6 | 119.95 (15) | C4—C9—C8 | 121.73 (17) |
O5—C5—C6 | 118.60 (14) | C4—C9—H9 | 118.2 |
C5—O5—H5 | 111.7 (18) | C8—C9—H9 | 120.0 |
C7H7NO2 | F(000) = 288 |
Mr = 137.14 | Dx = 1.489 Mg m−3 |
Monoclinic, P21/n | Melting point = 59–61 K |
Hall symbol: -P 2yn | Synchrotron radiation, λ = 0.6889 Å |
a = 10.1833 (16) Å | Cell parameters from 363 reflections |
b = 4.9766 (3) Å | θ = 3–25° |
c = 13.0109 (15) Å | µ = 0.11 mm−1 |
β = 111.938 (10)° | T = 293 K |
V = 611.62 (13) Å3 | Block, colourless |
Z = 4 | 0.18 × 0.15 × 0.10 mm |
Bruker-Nonius Apex II CCD diffractometer | 335 reflections with I > 2.00u(I) |
Silicon monochromator | Rint = 0.079 |
ω scans | θmax = 26.8°, θmin = 3.2° |
Absorption correction: multi-scan SADABS version 2004/1 | h = −6→6 |
Tmin = 0.34, Tmax = 0.99 | k = −6→6 |
2288 measured reflections | l = −15→15 |
547 independent reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.049 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 625. 966. 587. 219. 45.4 |
wR(F2) = 0.136 | (Δ/σ)max = 0.000129 |
S = 0.79 | Δρmax = 0.11 e Å−3 |
514 reflections | Δρmin = −0.11 e Å−3 |
97 parameters | Extinction correction: Larson 1970 Crystallographic Computing eq 22 |
84 restraints | Extinction coefficient: 261.538 |
Primary atom site location: structure-invariant direct methods |
C7H7NO2 | V = 611.62 (13) Å3 |
Mr = 137.14 | Z = 4 |
Monoclinic, P21/n | Synchrotron radiation, λ = 0.6889 Å |
a = 10.1833 (16) Å | µ = 0.11 mm−1 |
b = 4.9766 (3) Å | T = 293 K |
c = 13.0109 (15) Å | 0.18 × 0.15 × 0.10 mm |
β = 111.938 (10)° |
Bruker-Nonius Apex II CCD diffractometer | 547 independent reflections |
Absorption correction: multi-scan SADABS version 2004/1 | 335 reflections with I > 2.00u(I) |
Tmin = 0.34, Tmax = 0.99 | Rint = 0.079 |
2288 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 84 restraints |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.79 | Δρmax = 0.11 e Å−3 |
514 reflections | Δρmin = −0.11 e Å−3 |
97 parameters |
Refinement. The H atoms on carbon atoms (H3, H6, H7, H8, H9) were placed geometrically, then refined subject to geometrical restraints and finally allowed to ride on the host carbon. The H atoms on O1 and O5 were found in a fourier difference map and then refined subject to an O—H distance restraint of 0.82 Angstroms. Used global vibration and thermal similarity restraints. 022_ALERT_3_A Ratio Unique / Expected Reflections too Low ···. 0.42 029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ······. 0.41 088_ALERT_3_A Poor Data / Parameter Ratio ··················.. 5.30 340_ALERT_3_C Low Bond Precision on C—C bonds (x 1000) Ang ··· 7 The high pressure cell causes shading of a significant proportion of the sphere of reflections. This means that the completeness is reduced. 061_ALERT_3_A Tmax/Tmin Range Test RR' too Large ············. 0.35 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. The larger than expected range of transmission is probably due to the absorption effects of the Merrill-Bassett diamond-anvil cell. 731_ALERT_1_A Bond Calc 0.82 (4), Rep 0.8200 (9) ······ 9.90 su-Rat O1 –H1 1.555 1.555 731_ALERT_1_A Bond Calc 0.82 (3), Rep 0.8200 (9) ······ 9.90 su-Rat O5 –H5 1.555 1.555 These differences in the sus are due to the restraints applied to the O—H bonds for O1—H1 and O5—H5. The values calculated for bond sus by the cif check do not include the full variance/covariance matrix, whereas the values calculated by CRYSTALS do. 213_ALERT_2_C Atom C8 has ADP max/min Ratio ············. 3.30 oblate 213_ALERT_2_C Atom C9 has ADP max/min Ratio ············. 3.30 oblate 250_ALERT_2_C Large U3/U1 ratio for average U(i,j) tensor ···. 2.86 This is likely to be due to the lack of information available in one direction because of the shading caused by the high pressure cell. The result is rather elliptical adps which tend to have their major axes pointing in the same direction. ================================================================================ Resolution & Completeness Statistics (Cumulative) ================================================================================ Theta sin(th)/Lambda Complete Expected Measured Missing ——————————————————————————– 20.82 0.500 0.474 631 299 332 23.01 0.550 0.454 857 389 468 25.24 0.600 0.414 1097 454 643 ———————————————————— ACTA Min. Res. —- 27.51 0.650 0.396 1301 515 786 |
x | y | z | Uiso*/Ueq | ||
O1 | 0.7422 (5) | 1.0304 (5) | 0.6845 (2) | 0.0410 | |
N2 | 0.6891 (6) | 0.8738 (5) | 0.5881 (2) | 0.0315 | |
C3 | 0.7755 (7) | 0.7001 (6) | 0.5847 (3) | 0.0304 | |
C4 | 0.7451 (7) | 0.5146 (6) | 0.4903 (3) | 0.0275 | |
C5 | 0.6093 (7) | 0.5109 (6) | 0.4046 (3) | 0.0276 | |
O5 | 0.5073 (5) | 0.6860 (5) | 0.4024 (2) | 0.0362 | |
C6 | 0.5818 (7) | 0.3273 (6) | 0.3186 (3) | 0.0330 | |
C7 | 0.6832 (8) | 0.1496 (6) | 0.3176 (3) | 0.0365 | |
C8 | 0.8188 (8) | 0.1508 (7) | 0.4009 (3) | 0.0383 | |
C9 | 0.8444 (8) | 0.3316 (6) | 0.4872 (3) | 0.0318 | |
H3 | 0.8692 | 0.6940 | 0.6468 | 0.0420* | |
H6 | 0.4876 | 0.3197 | 0.2603 | 0.0416* | |
H7 | 0.6602 | 0.0151 | 0.2592 | 0.0614* | |
H8 | 0.8909 | 0.0241 | 0.4001 | 0.0479* | |
H9 | 0.9385 | 0.3315 | 0.5476 | 0.0535* | |
H1 | 0.683 (4) | 1.152 (7) | 0.666 (4) | 0.0586* | |
H5 | 0.535 (8) | 0.794 (6) | 0.454 (2) | 0.0644* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.030 (5) | 0.0507 (14) | 0.0382 (14) | 0.0030 (15) | 0.009 (2) | −0.0073 (10) |
N2 | 0.024 (5) | 0.0360 (14) | 0.0360 (15) | −0.0021 (15) | 0.013 (2) | −0.0012 (10) |
C3 | 0.023 (6) | 0.0425 (17) | 0.0336 (16) | −0.001 (2) | 0.019 (2) | 0.0053 (12) |
C4 | 0.021 (4) | 0.0355 (14) | 0.0342 (17) | 0.0023 (18) | 0.020 (2) | 0.0088 (11) |
C5 | 0.020 (4) | 0.0318 (14) | 0.0394 (18) | 0.0038 (17) | 0.021 (2) | 0.0051 (11) |
O5 | 0.020 (4) | 0.0459 (13) | 0.0457 (14) | 0.0068 (14) | 0.016 (2) | −0.0071 (10) |
C6 | 0.026 (5) | 0.0421 (17) | 0.0394 (18) | −0.0019 (19) | 0.022 (3) | 0.0000 (12) |
C7 | 0.044 (5) | 0.0407 (16) | 0.0418 (19) | 0.002 (2) | 0.036 (3) | −0.0018 (13) |
C8 | 0.034 (6) | 0.0433 (17) | 0.057 (2) | 0.0133 (19) | 0.039 (3) | 0.0093 (13) |
C9 | 0.016 (5) | 0.0432 (16) | 0.0463 (19) | 0.0026 (19) | 0.023 (3) | 0.0105 (12) |
O1—N2 | 1.402 (4) | O5—H5 | 0.8200 (9) |
O1—H1 | 0.8200 (9) | C6—C7 | 1.363 (9) |
N2—C3 | 1.246 (8) | C6—H6 | 0.977 |
C3—C4 | 1.473 (5) | C7—C8 | 1.401 (8) |
C3—H3 | 0.994 | C7—H7 | 0.974 |
C4—C5 | 1.416 (6) | C8—C9 | 1.385 (6) |
C4—C9 | 1.372 (9) | C8—H8 | 0.971 |
C5—O5 | 1.348 (7) | C9—H9 | 0.987 |
C5—C6 | 1.390 (5) | ||
N2—O1—H1 | 99 (3) | C5—C6—C7 | 120.6 (4) |
O1—N2—C3 | 112.1 (4) | C5—C6—H6 | 119.7 |
N2—C3—C4 | 122.2 (4) | C7—C6—H6 | 119.7 |
N2—C3—H3 | 117.9 | C6—C7—C8 | 121.4 (4) |
C4—C3—H3 | 119.8 | C6—C7—H7 | 119.4 |
C3—C4—C5 | 120.2 (6) | C8—C7—H7 | 119.2 |
C3—C4—C9 | 120.9 (4) | C7—C8—C9 | 117.5 (6) |
C5—C4—C9 | 118.8 (4) | C7—C8—H8 | 121.3 |
C4—C5—O5 | 121.8 (4) | C9—C8—H8 | 121.1 |
C4—C5—C6 | 119.1 (5) | C8—C9—C4 | 122.5 (4) |
O5—C5—C6 | 119.1 (4) | C8—C9—H9 | 118.6 |
C5—O5—H5 | 112 (5) | C4—C9—H9 | 118.9 |
C7H7NO2 | F(000) = 288 |
Mr = 137.14 | Dx = 1.635 Mg m−3 |
Monoclinic, P21/n | Melting point = 59–61 K |
Hall symbol: -P 2yn | Synchrotron radiation, λ = 0.6889 Å |
a = 9.851 (3) Å | Cell parameters from 253 reflections |
b = 4.9325 (7) Å | θ = 3–21° |
c = 12.286 (3) Å | µ = 0.12 mm−1 |
β = 111.09 (2)° | T = 293 K |
V = 557.0 (3) Å3 | Block, colourless |
Z = 4 | 0.18 × 0.15 × 0.10 mm |
Bruker-Nonius Apex II CCD diffractometer | 309 reflections with I > 2.00u(I) |
Silicon monochromator | Rint = 0.075 |
ω scans | θmax = 26.4°, θmin = 3.3° |
Absorption correction: multi-scan SADABS version 2004/1 | h = −5→5 |
Tmin = 0.51, Tmax = 0.99 | k = −6→6 |
2109 measured reflections | l = −14→14 |
472 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.040 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.101 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 451. 657. 389. 133. 19.2 |
S = 0.89 | (Δ/σ)max = 0.000091 |
437 reflections | Δρmax = 0.09 e Å−3 |
97 parameters | Δρmin = −0.16 e Å−3 |
84 restraints |
C7H7NO2 | V = 557.0 (3) Å3 |
Mr = 137.14 | Z = 4 |
Monoclinic, P21/n | Synchrotron radiation, λ = 0.6889 Å |
a = 9.851 (3) Å | µ = 0.12 mm−1 |
b = 4.9325 (7) Å | T = 293 K |
c = 12.286 (3) Å | 0.18 × 0.15 × 0.10 mm |
β = 111.09 (2)° |
Bruker-Nonius Apex II CCD diffractometer | 472 independent reflections |
Absorption correction: multi-scan SADABS version 2004/1 | 309 reflections with I > 2.00u(I) |
Tmin = 0.51, Tmax = 0.99 | Rint = 0.075 |
2109 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 84 restraints |
wR(F2) = 0.101 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.89 | Δρmax = 0.09 e Å−3 |
437 reflections | Δρmin = −0.16 e Å−3 |
97 parameters |
Refinement. The H atoms on carbon atoms (H3, H6, H7, H8, H9) were placed geometrically, then refined subject to geometrical restraints and finally allowed to ride on the host carbon. The H atoms on O1 and O5 were found in a fourier difference map and then refined subject to an O—H distance restraint of 0.82 Angstroms. Used global vibration and thermal similarity restraints. 022_ALERT_3_A Ratio Unique / Expected Reflections too Low ···. 0.41 029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ······. 0.40 088_ALERT_3_A Poor Data / Parameter Ratio ··················.. 4.51 340_ALERT_3_C Low Bond Precision on C—C bonds (x 1000) Ang ··· 7 The high pressure cell causes shading of a significant proportion of the sphere of reflections. This means that the completeness is reduced. 731_ALERT_1_A Bond Calc 0.82 (4), Rep 0.8200 (9) ······ 9.90 su-Rat O1 –H1 1.555 1.555 731_ALERT_1_A Bond Calc 0.82 (4), Rep 0.8200 (9) ······ 9.90 su-Rat O5 –H5 1.555 1.555 These differences in the sus are due to the restraints applied to the O—H bonds for O1—H1 and O5—H5. The values calculated for bond sus by the cif check do not include the full variance/covariance matrix, whereas the values calculated by CRYSTALS do. 061_ALERT_3_B Tmax/Tmin Range Test RR' too Large ············. 0.52 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. The larger than expected range of transmission is probably due to the absorption effects of the Merrill-Bassett diamond-anvil cell. 152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ···.. ? This is probably just due to rounding errors. 432_ALERT_2_C Short Inter X···Y Contact O1.. C3 = 3.01 A ng. This is likely just due to the general closing together of molecules and not particularly significant. ================================================================================ Resolution & Completeness Statistics (Cumulative) ================================================================================ Theta sin(th)/Lambda Complete Expected Measured Missing ——————————————————————————– 20.82 0.500 0.460 581 267 314 23.01 0.550 0.439 775 340 435 25.24 0.600 0.402 999 402 597 ———————————————————— ACTA Min. Res. —- 27.51 0.650 0.388 1138 442 696 |
x | y | z | Uiso*/Ueq | ||
O1 | 0.7466 (5) | 1.0446 (4) | 0.6870 (2) | 0.0349 | |
N2 | 0.6909 (6) | 0.8787 (5) | 0.5891 (2) | 0.0251 | |
C3 | 0.7821 (7) | 0.7042 (6) | 0.5859 (3) | 0.0265 | |
C4 | 0.7490 (8) | 0.5078 (6) | 0.4898 (3) | 0.0261 | |
C5 | 0.6101 (8) | 0.4992 (6) | 0.4014 (3) | 0.0285 | |
O5 | 0.5039 (5) | 0.6785 (4) | 0.3997 (2) | 0.0364 | |
C6 | 0.5785 (8) | 0.3020 (6) | 0.3159 (3) | 0.0282 | |
C7 | 0.6837 (8) | 0.1206 (6) | 0.3139 (3) | 0.0340 | |
C8 | 0.8217 (8) | 0.1302 (6) | 0.3990 (3) | 0.0326 | |
C9 | 0.8521 (8) | 0.3222 (6) | 0.4872 (3) | 0.0301 | |
H3 | 0.8735 | 0.6965 | 0.6467 | 0.0422* | |
H6 | 0.4866 | 0.2927 | 0.2610 | 0.0480* | |
H7 | 0.6615 | −0.0151 | 0.2540 | 0.0450* | |
H8 | 0.8960 | 0.0014 | 0.4024 | 0.0437* | |
H9 | 0.9438 | 0.3231 | 0.5463 | 0.0504* | |
H1 | 0.684 (4) | 1.161 (8) | 0.677 (4) | 0.0592* | |
H5 | 0.538 (8) | 0.794 (6) | 0.450 (3) | 0.0556* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.036 (6) | 0.0340 (12) | 0.0247 (12) | 0.0011 (15) | −0.001 (2) | −0.0078 (9) |
N2 | 0.034 (6) | 0.0254 (12) | 0.0182 (13) | −0.0018 (16) | 0.012 (2) | −0.0023 (9) |
C3 | 0.026 (6) | 0.0272 (15) | 0.0243 (16) | −0.0015 (19) | 0.006 (3) | 0.0015 (11) |
C4 | 0.030 (5) | 0.0248 (13) | 0.0243 (16) | 0.0010 (18) | 0.011 (2) | 0.0042 (11) |
C5 | 0.033 (5) | 0.0240 (13) | 0.0262 (17) | 0.0021 (18) | 0.008 (2) | 0.0018 (11) |
O5 | 0.039 (5) | 0.0307 (12) | 0.0315 (13) | 0.0078 (15) | 0.003 (2) | −0.0092 (9) |
C6 | 0.035 (5) | 0.0323 (15) | 0.0203 (16) | 0.000 (2) | 0.013 (3) | 0.0007 (11) |
C7 | 0.046 (5) | 0.0266 (14) | 0.0300 (18) | 0.005 (2) | 0.014 (3) | 0.0001 (12) |
C8 | 0.039 (5) | 0.0271 (14) | 0.0353 (18) | 0.0066 (19) | 0.018 (3) | 0.0074 (11) |
C9 | 0.029 (5) | 0.0304 (15) | 0.0298 (17) | 0.004 (2) | 0.009 (3) | 0.0075 (11) |
O1—N2 | 1.393 (3) | O5—H5 | 0.8200 (9) |
O1—H1 | 0.8200 (9) | C6—C7 | 1.377 (9) |
N2—C3 | 1.255 (8) | C6—H6 | 0.915 |
C3—C4 | 1.470 (5) | C7—C8 | 1.386 (8) |
C3—H3 | 0.941 | C7—H7 | 0.960 |
C4—C5 | 1.409 (7) | C8—C9 | 1.388 (5) |
C4—C9 | 1.376 (9) | C8—H8 | 0.959 |
C5—O5 | 1.365 (8) | C9—H9 | 0.934 |
C5—C6 | 1.382 (5) | ||
N2—O1—H1 | 104 (3) | C5—C6—C7 | 120.4 (5) |
O1—N2—C3 | 111.5 (4) | C5—C6—H6 | 119.3 |
N2—C3—C4 | 121.5 (4) | C7—C6—H6 | 120.4 |
N2—C3—H3 | 119.6 | C6—C7—C8 | 120.4 (4) |
C4—C3—H3 | 118.9 | C6—C7—H7 | 120.1 |
C3—C4—C5 | 120.8 (6) | C8—C7—H7 | 119.6 |
C3—C4—C9 | 120.3 (4) | C7—C8—C9 | 119.3 (6) |
C5—C4—C9 | 118.8 (3) | C7—C8—H8 | 122.5 |
C4—C5—O5 | 121.3 (3) | C9—C8—H8 | 118.1 |
C4—C5—C6 | 119.9 (6) | C8—C9—C4 | 121.2 (5) |
O5—C5—C6 | 118.8 (4) | C8—C9—H9 | 119.2 |
C5—O5—H5 | 109 (5) | C4—C9—H9 | 119.6 |
C7H7NO2 | F(000) = 288 |
Mr = 137.14 | Dx = 1.690 Mg m−3 |
Monoclinic, P21/n | Melting point = 59–61 K |
Hall symbol: -P 2yn | Synchrotron radiation, λ = 0.6889 Å |
a = 9.7148 (16) Å | Cell parameters from 337 reflections |
b = 4.9322 (3) Å | θ = 3–25° |
c = 12.0145 (16) Å | µ = 0.13 mm−1 |
β = 110.607 (11)° | T = 293 K |
V = 538.84 (12) Å3 | Block, colourless |
Z = 4 | 0.18 × 0.15 × 0.10 mm |
Bruker-Nonius Apex II CCD diffractometer | 317 reflections with I > 2.00u(I) |
Silicon monochromator | Rint = 0.061 |
ω scans | θmax = 26.4°, θmin = 3.3° |
Absorption correction: multi-scan SADABS version 2004/1 | h = −5→5 |
Tmin = 0.62, Tmax = 0.99 | k = −6→6 |
2031 measured reflections | l = −13→13 |
412 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.107 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 526. 806. 496. 179. 28.7 |
S = 0.88 | (Δ/σ)max = 0.000138 |
412 reflections | Δρmax = 0.13 e Å−3 |
97 parameters | Δρmin = −0.14 e Å−3 |
84 restraints |
C7H7NO2 | V = 538.84 (12) Å3 |
Mr = 137.14 | Z = 4 |
Monoclinic, P21/n | Synchrotron radiation, λ = 0.6889 Å |
a = 9.7148 (16) Å | µ = 0.13 mm−1 |
b = 4.9322 (3) Å | T = 293 K |
c = 12.0145 (16) Å | 0.18 × 0.15 × 0.10 mm |
β = 110.607 (11)° |
Bruker-Nonius Apex II CCD diffractometer | 412 independent reflections |
Absorption correction: multi-scan SADABS version 2004/1 | 317 reflections with I > 2.00u(I) |
Tmin = 0.62, Tmax = 0.99 | Rint = 0.061 |
2031 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 84 restraints |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.88 | Δρmax = 0.13 e Å−3 |
412 reflections | Δρmin = −0.14 e Å−3 |
97 parameters |
Refinement. The H atoms on carbon atoms (H3, H6, H7, H8, H9) were placed geometrically, then refined subject to geometrical restraints and finally allowed to ride on the host carbon. The H atoms on O1 and O5 were found in a fourier difference map and then refined subject to an O—H distance restraint of 0.82 Angstroms. Used global vibration and thermal similarity restraints. 022_ALERT_3_A Ratio Unique / Expected Reflections too Low ···. 0.38 029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ······. 0.38 088_ALERT_3_A Poor Data / Parameter Ratio ··················.. 4.25 340_ALERT_3_C Low Bond Precision on C—C bonds (x 1000) Ang ··· 6 The high pressure cell causes shading of a significant proportion of the sphere of reflections. This means that the completeness is reduced. 731_ALERT_1_A Bond Calc 0.82 (4), Rep 0.8200 (9) ······ 9.90 su-Rat O1 –H1 1.555 1.555 731_ALERT_1_A Bond Calc 0.82 (4), Rep 0.8200 (9) ······ 9.90 su-Rat O5 –H5 1.555 1.555 These differences in the sus are due to the restraints applied to the O—H bonds for O1—H1 and O5—H5. The values calculated for bond sus by the cif check do not include the full variance/covariance matrix, whereas the values calculated by CRYSTALS do. 061_ALERT_3_B Tmax/Tmin Range Test RR' too Large ············. 0.63 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. The larger than expected range of transmission is probably due to the absorption effects of the Merrill-Bassett diamond-anvil cell. 250_ALERT_2_C Large U3/U1 ratio for average U(i,j) tensor ···. 2.67 This is probably due to the lack of information in one direction which occurs as a result of the Merrill-Bassett diamond-anvil cell shading a significant region of reciprocal space. The effect of this shading is often to cause a smearing out of electron density in one particular direction. 411_ALERT_2_C Short Inter H···H Contact H8.. H9 = 2.11 A ng. 432_ALERT_2_C Short Inter X···Y Contact O1.. C3 = 2.95 A ng. 432_ALERT_2_C Short Inter X···Y Contact C3.. C8 = 3.16 A ng. This is likely just due to the general closing together of molecules and not a particularly significant contact. ================================================================================ Resolution & Completeness Statistics (Cumulative) ================================================================================ Theta sin(th)/Lambda Complete Expected Measured Missing ——————————————————————————– 20.82 0.500 0.448 554 248 306 23.01 0.550 0.426 756 322 434 25.24 0.600 0.383 974 373 601 ———————————————————— ACTA Min. Res. —- 27.51 0.650 0.375 1098 412 686 |
x | y | z | Uiso*/Ueq | ||
O1 | 0.7462 (5) | 1.0490 (4) | 0.68831 (19) | 0.0386 | |
N2 | 0.6931 (6) | 0.8796 (4) | 0.5889 (2) | 0.0335 | |
C3 | 0.7858 (7) | 0.7063 (5) | 0.5853 (3) | 0.0326 | |
C4 | 0.7518 (7) | 0.5057 (5) | 0.4892 (3) | 0.0340 | |
C5 | 0.6097 (7) | 0.4976 (5) | 0.4010 (3) | 0.0332 | |
O5 | 0.5041 (5) | 0.6767 (4) | 0.39837 (18) | 0.0398 | |
C6 | 0.5772 (7) | 0.2936 (5) | 0.3146 (3) | 0.0331 | |
C7 | 0.6824 (8) | 0.1128 (5) | 0.3136 (3) | 0.0395 | |
C8 | 0.8239 (7) | 0.1241 (5) | 0.3987 (3) | 0.0392 | |
C9 | 0.8549 (7) | 0.3193 (5) | 0.4864 (3) | 0.0353 | |
H3 | 0.8794 | 0.7002 | 0.6474 | 0.0420* | |
H6 | 0.4829 | 0.2860 | 0.2562 | 0.0416* | |
H7 | 0.6593 | −0.0218 | 0.2552 | 0.0614* | |
H8 | 0.8960 | −0.0027 | 0.3979 | 0.0479* | |
H9 | 0.9490 | 0.3192 | 0.5469 | 0.0535* | |
H1 | 0.686 (4) | 1.173 (7) | 0.674 (4) | 0.0586* | |
H5 | 0.544 (8) | 0.784 (6) | 0.452 (3) | 0.0644* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.046 (6) | 0.0304 (9) | 0.0246 (11) | 0.0023 (13) | −0.005 (2) | −0.0082 (7) |
N2 | 0.046 (5) | 0.0236 (11) | 0.0200 (11) | −0.0010 (15) | −0.003 (2) | −0.0016 (8) |
C3 | 0.040 (6) | 0.0259 (13) | 0.0221 (14) | −0.0011 (18) | −0.001 (2) | 0.0036 (9) |
C4 | 0.044 (5) | 0.0219 (11) | 0.0240 (14) | −0.0001 (16) | −0.003 (2) | 0.0039 (9) |
C5 | 0.041 (5) | 0.0207 (11) | 0.0278 (15) | 0.0021 (16) | 0.000 (2) | 0.0017 (9) |
O5 | 0.044 (5) | 0.0293 (10) | 0.0318 (12) | 0.0062 (13) | −0.004 (2) | −0.0053 (7) |
C6 | 0.041 (5) | 0.0266 (12) | 0.0220 (14) | −0.0048 (17) | −0.001 (2) | −0.0004 (9) |
C7 | 0.056 (5) | 0.0251 (12) | 0.0290 (15) | 0.0018 (19) | 0.004 (2) | −0.0005 (10) |
C8 | 0.053 (5) | 0.0226 (11) | 0.0330 (16) | 0.0057 (16) | 0.004 (3) | 0.0068 (9) |
C9 | 0.042 (5) | 0.0259 (12) | 0.0274 (15) | 0.0005 (18) | 0.000 (2) | 0.0070 (9) |
O1—N2 | 1.399 (3) | O5—H5 | 0.8200 (9) |
O1—H1 | 0.8200 (9) | C6—C7 | 1.359 (8) |
N2—C3 | 1.254 (7) | C6—H6 | 0.938 |
C3—C4 | 1.467 (4) | C7—C8 | 1.396 (7) |
C3—H3 | 0.953 | C7—H7 | 0.934 |
C4—C5 | 1.415 (7) | C8—C9 | 1.380 (4) |
C4—C9 | 1.369 (8) | C8—H8 | 0.941 |
C5—O5 | 1.346 (7) | C9—H9 | 0.947 |
C5—C6 | 1.400 (4) | ||
N2—O1—H1 | 104 (3) | C5—C6—C7 | 120.3 (4) |
O1—N2—C3 | 112.5 (3) | C5—C6—H6 | 119.3 |
N2—C3—C4 | 121.4 (4) | C7—C6—H6 | 120.4 |
N2—C3—H3 | 119.6 | C6—C7—C8 | 121.2 (3) |
C4—C3—H3 | 118.9 | C6—C7—H7 | 119.3 |
C3—C4—C5 | 119.9 (5) | C8—C7—H7 | 119.5 |
C3—C4—C9 | 120.6 (4) | C7—C8—C9 | 118.7 (5) |
C5—C4—C9 | 119.5 (3) | C7—C8—H8 | 120.8 |
C4—C5—O5 | 122.3 (3) | C9—C8—H8 | 120.5 |
C4—C5—C6 | 118.8 (5) | C8—C9—C4 | 121.5 (4) |
O5—C5—C6 | 118.9 (4) | C8—C9—H9 | 118.5 |
C5—O5—H5 | 105 (5) | C4—C9—H9 | 119.9 |
C7H7NO2 | F(000) = 288 |
Mr = 137.14 | Dx = 1.747 Mg m−3 |
Monoclinic, P21/n | Melting point = 59–61 K |
Hall symbol: -P 2yn | Synchrotron radiation, λ = 0.6889 Å |
a = 9.5728 (15) Å | Cell parameters from 286 reflections |
b = 4.9342 (3) Å | θ = 3–22° |
c = 11.7537 (15) Å | µ = 0.13 mm−1 |
β = 110.064 (10)° | T = 293 K |
V = 521.48 (11) Å3 | Block, colourless |
Z = 4 | 0.18 × 0.15 × 0.10 mm |
Bruker-Nonius Apex II CCD diffractometer | 285 reflections with I > 2.00u(I) |
Silicon monochromator | Rint = 0.069 |
ω scans | θmax = 26.4°, θmin = 3.4° |
Absorption correction: multi-scan SADABS version 2004/1 | h = −5→5 |
Tmin = 0.38, Tmax = 0.99 | k = −6→6 |
1793 measured reflections | l = −13→13 |
417 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.112 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 528. 733. 450. 146. 1.48 |
S = 0.91 | (Δ/σ)max = 0.000088 |
394 reflections | Δρmax = 0.14 e Å−3 |
97 parameters | Δρmin = −0.12 e Å−3 |
84 restraints |
C7H7NO2 | V = 521.48 (11) Å3 |
Mr = 137.14 | Z = 4 |
Monoclinic, P21/n | Synchrotron radiation, λ = 0.6889 Å |
a = 9.5728 (15) Å | µ = 0.13 mm−1 |
b = 4.9342 (3) Å | T = 293 K |
c = 11.7537 (15) Å | 0.18 × 0.15 × 0.10 mm |
β = 110.064 (10)° |
Bruker-Nonius Apex II CCD diffractometer | 417 independent reflections |
Absorption correction: multi-scan SADABS version 2004/1 | 285 reflections with I > 2.00u(I) |
Tmin = 0.38, Tmax = 0.99 | Rint = 0.069 |
1793 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 84 restraints |
wR(F2) = 0.112 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.91 | Δρmax = 0.14 e Å−3 |
394 reflections | Δρmin = −0.12 e Å−3 |
97 parameters |
Refinement. The H atoms on carbon atoms (H3, H6, H7, H8, H9) were placed geometrically, then refined subject to geometrical restraints and finally allowed to ride on the host carbon. The H atoms on O1 and O5 were found in a fourier difference map and then refined subject to an O—H distance restraint of 0.82 Angstroms. Used global vibration and thermal similarity restraints. 022_ALERT_3_A Ratio Unique / Expected Reflections too Low ···. 0.39 029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ······. 0.37 088_ALERT_3_A Poor Data / Parameter Ratio ··················.. 4.06 340_ALERT_3_C Low Bond Precision on C—C bonds (x 1000) Ang ··· 8 The high pressure cell causes shading of a significant proportion of the sphere of reflections. This means that the completeness is reduced. 731_ALERT_1_A Bond Calc 0.82 (5), Rep 0.8200 (9) ······ 9.90 su-Rat O1 –H1 1.555 1.555 731_ALERT_1_A Bond Calc 0.82 (4), Rep 0.8200 (9) ······ 9.90 su-Rat O5 –H5 1.555 1.555 These differences in the sus are due to the restraints applied to the O—H bonds for O1—H1 and O5—H5. The values calculated for bond sus by the cif check do not include the full variance/covariance matrix, whereas the values calculated by CRYSTALS do. 061_ALERT_3_A Tmax/Tmin Range Test RR' too Large ············. 0.39 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. The larger than expected range of transmission is probably due to the absorption effects of the Merrill-Bassett diamond-anvil cell. 411_ALERT_2_B Short Inter H···H Contact H8.. H9 = 2.07 A ng. 417_ALERT_2_B Short Inter D—H.·H—D H1.. H5 = 2.08 A ng. 432_ALERT_2_B Short Inter X···Y Contact O1.. C3 = 2.88 A ng. 432_ALERT_2_C Short Inter X···Y Contact C3.. C8 = 3.11 A ng. This is likely just due to the general closing together of molecules and not a particularly significant contact. ================================================================================ Resolution & Completeness Statistics (Cumulative) ================================================================================ Theta sin(th)/Lambda Complete Expected Measured Missing ——————————————————————————– 20.82 0.500 0.426 544 232 312 23.01 0.550 0.419 726 304 422 25.24 0.600 0.375 939 352 587 ———————————————————— ACTA Min. Res. —- 27.51 0.650 0.370 1064 394 670 |
x | y | z | Uiso*/Ueq | ||
O1 | 0.7469 (6) | 1.0513 (5) | 0.6888 (3) | 0.0363 | |
N2 | 0.6923 (8) | 0.8809 (5) | 0.5888 (3) | 0.0296 | |
C3 | 0.7866 (9) | 0.7063 (6) | 0.5858 (3) | 0.0291 | |
C4 | 0.7525 (9) | 0.5051 (7) | 0.4888 (4) | 0.0290 | |
C5 | 0.6100 (9) | 0.4930 (6) | 0.3999 (4) | 0.0272 | |
O5 | 0.5029 (6) | 0.6744 (5) | 0.3970 (2) | 0.0353 | |
C6 | 0.5758 (9) | 0.2858 (7) | 0.3135 (3) | 0.0212 | |
C7 | 0.6822 (10) | 0.1055 (6) | 0.3132 (4) | 0.0289 | |
C8 | 0.8250 (9) | 0.1191 (6) | 0.3983 (3) | 0.0246 | |
C9 | 0.8552 (9) | 0.3181 (6) | 0.4875 (4) | 0.0309 | |
H3 | 0.8802 | 0.7002 | 0.6479 | 0.0420* | |
H6 | 0.4815 | 0.2781 | 0.2551 | 0.0416* | |
H7 | 0.6591 | −0.0290 | 0.2548 | 0.0614* | |
H8 | 0.8972 | −0.0077 | 0.3976 | 0.0479* | |
H9 | 0.9493 | 0.3181 | 0.5480 | 0.0535* | |
H1 | 0.685 (5) | 1.173 (9) | 0.673 (5) | 0.0586* | |
H5 | 0.536 (11) | 0.805 (6) | 0.441 (4) | 0.0644* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.043 (8) | 0.0279 (12) | 0.0229 (14) | 0.0043 (17) | −0.008 (3) | −0.0064 (10) |
N2 | 0.039 (7) | 0.0227 (14) | 0.0207 (16) | −0.001 (2) | 0.002 (3) | −0.0035 (11) |
C3 | 0.038 (7) | 0.0235 (17) | 0.0199 (19) | 0.001 (2) | 0.002 (3) | 0.0028 (12) |
C4 | 0.037 (6) | 0.0205 (14) | 0.024 (2) | 0.0000 (19) | 0.003 (3) | 0.0015 (12) |
C5 | 0.035 (5) | 0.0202 (15) | 0.023 (2) | 0.001 (2) | 0.006 (3) | 0.0019 (12) |
O5 | 0.040 (5) | 0.0249 (12) | 0.0297 (16) | 0.0071 (17) | −0.003 (3) | −0.0048 (10) |
C6 | 0.023 (6) | 0.0283 (16) | 0.0161 (19) | −0.007 (2) | 0.012 (3) | −0.0003 (12) |
C7 | 0.038 (6) | 0.0185 (14) | 0.029 (2) | 0.001 (2) | 0.009 (3) | −0.0007 (13) |
C8 | 0.031 (6) | 0.0215 (15) | 0.027 (2) | 0.002 (2) | 0.017 (3) | 0.0072 (12) |
C9 | 0.040 (6) | 0.0253 (15) | 0.0222 (19) | 0.005 (2) | 0.004 (3) | 0.0057 (12) |
O1—N2 | 1.393 (3) | O5—H5 | 0.8200 (9) |
O1—H1 | 0.8200 (9) | C6—C7 | 1.353 (11) |
N2—C3 | 1.257 (10) | C6—H6 | 0.928 |
C3—C4 | 1.462 (5) | C7—C8 | 1.392 (9) |
C3—H3 | 0.943 | C7—H7 | 0.926 |
C4—C5 | 1.406 (9) | C8—C9 | 1.392 (5) |
C4—C9 | 1.352 (11) | C8—H8 | 0.934 |
C5—O5 | 1.353 (9) | C9—H9 | 0.937 |
C5—C6 | 1.399 (5) | ||
N2—O1—H1 | 103 (4) | C5—C6—C7 | 119.6 (5) |
O1—N2—C3 | 111.8 (4) | C5—C6—H6 | 119.5 |
N2—C3—C4 | 121.1 (5) | C7—C6—H6 | 120.9 |
N2—C3—H3 | 120.1 | C6—C7—C8 | 121.4 (4) |
C4—C3—H3 | 118.8 | C6—C7—H7 | 119.0 |
C3—C4—C5 | 120.6 (7) | C8—C7—H7 | 119.6 |
C3—C4—C9 | 120.2 (5) | C7—C8—C9 | 118.3 (7) |
C5—C4—C9 | 119.1 (4) | C7—C8—H8 | 120.5 |
C4—C5—O5 | 121.6 (4) | C9—C8—H8 | 121.1 |
C4—C5—C6 | 119.8 (6) | C8—C9—C4 | 121.7 (5) |
O5—C5—C6 | 118.6 (5) | C8—C9—H9 | 117.9 |
C5—O5—H5 | 112 (7) | C4—C9—H9 | 120.4 |
C7H7NO2 | F(000) = 288 |
Mr = 137.14 | Dx = 1.775 Mg m−3 |
Monoclinic, P21/n | Melting point = 59–61 K |
Hall symbol: -P 2yn | Synchrotron radiation, λ = 0.6889 Å |
a = 9.513 (2) Å | Cell parameters from 302 reflections |
b = 4.9319 (4) Å | θ = 3–24° |
c = 11.630 (2) Å | µ = 0.13 mm−1 |
β = 109.859 (14)° | T = 293 K |
V = 513.19 (15) Å3 | Block, colourless |
Z = 4 | 0.18 × 0.15 × 0.10 mm |
Bruker-Nonius Apex II CCD diffractometer | 305 reflections with I > 2.00u(I) |
Silicon monochromator | Rint = 0.076 |
ω scans | θmax = 26.4°, θmin = 3.4° |
Absorption correction: multi-scan SADABS version 2004/1 | h = −5→5 |
Tmin = 0.42, Tmax = 0.99 | k = −6→6 |
1925 measured reflections | l = −13→13 |
410 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.094 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 415. 577. 330. 94.6 -9.74 |
S = 0.94 | (Δ/σ)max = 0.000066 |
386 reflections | Δρmax = 0.13 e Å−3 |
97 parameters | Δρmin = −0.11 e Å−3 |
84 restraints |
C7H7NO2 | V = 513.19 (15) Å3 |
Mr = 137.14 | Z = 4 |
Monoclinic, P21/n | Synchrotron radiation, λ = 0.6889 Å |
a = 9.513 (2) Å | µ = 0.13 mm−1 |
b = 4.9319 (4) Å | T = 293 K |
c = 11.630 (2) Å | 0.18 × 0.15 × 0.10 mm |
β = 109.859 (14)° |
Bruker-Nonius Apex II CCD diffractometer | 410 independent reflections |
Absorption correction: multi-scan SADABS version 2004/1 | 305 reflections with I > 2.00u(I) |
Tmin = 0.42, Tmax = 0.99 | Rint = 0.076 |
1925 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 84 restraints |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.94 | Δρmax = 0.13 e Å−3 |
386 reflections | Δρmin = −0.11 e Å−3 |
97 parameters |
Refinement. The H atoms on carbon atoms (H3, H6, H7, H8, H9) were placed geometrically, then refined subject to geometrical restraints and finally allowed to ride on the host carbon. The H atoms on O1 and O5 were found in a fourier difference map and then refined subject to an O—H distance restraint of 0.82 Angstroms. Used global vibration and thermal similarity restraints. 022_ALERT_3_A Ratio Unique / Expected Reflections too Low ···. 0.39 029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ······. 0.38 088_ALERT_3_A Poor Data / Parameter Ratio ··················.. 3.98 340_ALERT_3_C Low Bond Precision on C—C bonds (x 1000) Ang ··· 7 The high pressure cell causes shading of a significant proportion of the sphere of reflections. This means that the completeness is reduced. 061_ALERT_3_A Tmax/Tmin Range Test RR' too Large ············. 0.43 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. The larger than expected range of transmission is probably due to the absorption effects of the Merrill-Bassett diamond-anvil cell. 731_ALERT_1_A Bond Calc 0.82 (4), Rep 0.8200 (9) ······ 9.90 su-Rat O1 –H1 1.555 1.555 731_ALERT_1_A Bond Calc 0.82 (4), Rep 0.8200 (9) ······ 9.90 su-Rat O5 –H5 1.555 1.555 These differences in the sus are due to the restraints applied to the O—H bonds for O1—H1 and O5—H5. The values calculated for bond sus by the cif check do not include the full variance/covariance matrix, whereas the values calculated by CRYSTALS do. 411_ALERT_2_B Short Inter H···H Contact H8.. H9 = 2.01 A ng. 417_ALERT_2_B Short Inter D—H.·H—D H1.. H5 = 2.08 A ng. 432_ALERT_2_B Short Inter X···Y Contact O1.. C3 = 2.87 A ng. 432_ALERT_2_B Short Inter X···Y Contact C3.. C8 = 3.07 A ng. 432_ALERT_2_C Short Inter X···Y Contact C9.. C9 = 3.17 A ng. These short intermolecular contacts are simply due to the closing up of the voids between the molecules because of the application of hydrostatic pressure. ================================================================================ Resolution & Completeness Statistics (Cumulative) ================================================================================ Theta sin(th)/Lambda Complete Expected Measured Missing ——————————————————————————– 20.82 0.500 0.430 537 231 306 23.01 0.550 0.421 717 302 415 25.24 0.600 0.378 925 350 575 ———————————————————— ACTA Min. Res. —- 27.51 0.650 0.369 1050 387 663 |
x | y | z | Uiso*/Ueq | ||
O1 | 0.7473 (6) | 1.0528 (4) | 0.6898 (2) | 0.0346 | |
N2 | 0.6921 (7) | 0.8817 (5) | 0.5895 (3) | 0.0289 | |
C3 | 0.7887 (8) | 0.7084 (6) | 0.5843 (3) | 0.0279 | |
C4 | 0.7549 (8) | 0.5041 (6) | 0.4876 (3) | 0.0244 | |
C5 | 0.6116 (8) | 0.4911 (6) | 0.3990 (3) | 0.0220 | |
O5 | 0.5017 (6) | 0.6740 (4) | 0.3973 (2) | 0.0288 | |
C6 | 0.5766 (9) | 0.2837 (6) | 0.3130 (3) | 0.0176 | |
C7 | 0.6809 (9) | 0.1029 (6) | 0.3139 (3) | 0.0212 | |
C8 | 0.8277 (8) | 0.1164 (6) | 0.3986 (3) | 0.0220 | |
C9 | 0.8587 (8) | 0.3161 (6) | 0.4865 (3) | 0.0218 | |
H1 | 0.678 (4) | 1.160 (9) | 0.678 (4) | 0.0530* | |
H3 | 0.8844 | 0.7075 | 0.6444 | 0.0376* | |
H5 | 0.536 (9) | 0.793 (6) | 0.448 (3) | 0.0486* | |
H6 | 0.4813 | 0.2703 | 0.2560 | 0.0287* | |
H7 | 0.6567 | −0.0350 | 0.2552 | 0.0325* | |
H8 | 0.9014 | −0.0094 | 0.3972 | 0.0337* | |
H9 | 0.9537 | 0.3186 | 0.5474 | 0.0317* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.035 (7) | 0.0249 (11) | 0.0272 (13) | 0.0040 (15) | −0.011 (3) | −0.0078 (9) |
N2 | 0.029 (6) | 0.0207 (13) | 0.0244 (16) | −0.0006 (18) | −0.007 (3) | −0.0045 (10) |
C3 | 0.032 (7) | 0.0226 (15) | 0.0223 (18) | 0.000 (2) | 0.001 (3) | 0.0012 (11) |
C4 | 0.026 (5) | 0.0206 (13) | 0.0225 (18) | 0.0005 (18) | 0.003 (3) | 0.0022 (11) |
C5 | 0.020 (5) | 0.0203 (13) | 0.0260 (19) | 0.0026 (19) | 0.008 (3) | 0.0014 (11) |
O5 | 0.023 (5) | 0.0257 (11) | 0.0298 (15) | 0.0070 (15) | −0.001 (2) | −0.0080 (9) |
C6 | 0.011 (6) | 0.0239 (14) | 0.0215 (18) | −0.0049 (19) | 0.010 (3) | 0.0013 (11) |
C7 | 0.022 (6) | 0.0208 (13) | 0.0251 (18) | −0.0009 (19) | 0.013 (3) | 0.0007 (12) |
C8 | 0.019 (6) | 0.0205 (13) | 0.0299 (19) | 0.0059 (19) | 0.013 (3) | 0.0066 (11) |
C9 | 0.016 (5) | 0.0239 (14) | 0.0246 (19) | −0.0030 (19) | 0.006 (3) | 0.0067 (11) |
O1—N2 | 1.391 (3) | O5—H5 | 0.8200 (9) |
O1—H1 | 0.8200 (9) | C6—C7 | 1.332 (10) |
N2—C3 | 1.271 (9) | C6—H6 | 0.926 |
C3—C4 | 1.463 (5) | C7—C8 | 1.411 (8) |
C3—H3 | 0.940 | C7—H7 | 0.935 |
C4—C5 | 1.403 (8) | C8—C9 | 1.377 (5) |
C4—C9 | 1.358 (9) | C8—H8 | 0.940 |
C5—O5 | 1.376 (8) | C9—H9 | 0.939 |
C5—C6 | 1.389 (4) | ||
N2—O1—H1 | 102 (3) | C5—C6—C7 | 119.4 (5) |
O1—N2—C3 | 112.0 (4) | C5—C6—H6 | 120.4 |
N2—C3—C4 | 121.7 (5) | C7—C6—H6 | 120.2 |
N2—C3—H3 | 120.1 | C6—C7—C8 | 122.1 (3) |
C4—C3—H3 | 118.2 | C6—C7—H7 | 119.0 |
C3—C4—C5 | 120.1 (6) | C8—C7—H7 | 118.9 |
C3—C4—C9 | 120.4 (5) | C7—C8—C9 | 117.6 (6) |
C5—C4—C9 | 119.4 (4) | C7—C8—H8 | 121.6 |
C4—C5—O5 | 121.6 (3) | C9—C8—H8 | 120.8 |
C4—C5—C6 | 119.9 (6) | C8—C9—C4 | 121.5 (5) |
O5—C5—C6 | 118.5 (5) | C8—C9—H9 | 118.5 |
C5—O5—H5 | 110 (6) | C4—C9—H9 | 120.0 |
C7H7NO2 | F(000) = 288 |
Mr = 137.14 | Dx = 1.806 Mg m−3 |
Monoclinic, P21/n | Melting point = 59–61 K |
Hall symbol: -P 2yn | Synchrotron radiation, λ = 0.6889 Å |
a = 7.677 (3) Å | Cell parameters from 323 reflections |
b = 5.7731 (8) Å | θ = 3–21° |
c = 12.159 (3) Å | µ = 0.13 mm−1 |
β = 110.62 (2)° | T = 293 K |
V = 504.4 (3) Å3 | Block, colourless |
Z = 4 | 0.18 × 0.15 × 0.10 mm |
Bruker-Nonius Apex II CCD diffractometer | 191 reflections with I > 2.00u(I) |
Silicon monochromator | Rint = 0.126 |
ω scans | θmax = 23.3°, θmin = 3.6° |
Absorption correction: multi-scan SADABS version 2004/1 | h = −3→3 |
Tmin = 0.46, Tmax = 0.99 | k = −6→6 |
1157 measured reflections | l = −12→12 |
296 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.125 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.275 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 149. 193. 87.2 12.1 |
S = 0.82 | (Δ/σ)max = 0.000022 |
268 reflections | Δρmax = 0.37 e Å−3 |
47 parameters | Δρmin = −0.40 e Å−3 |
95 restraints |
C7H7NO2 | V = 504.4 (3) Å3 |
Mr = 137.14 | Z = 4 |
Monoclinic, P21/n | Synchrotron radiation, λ = 0.6889 Å |
a = 7.677 (3) Å | µ = 0.13 mm−1 |
b = 5.7731 (8) Å | T = 293 K |
c = 12.159 (3) Å | 0.18 × 0.15 × 0.10 mm |
β = 110.62 (2)° |
Bruker-Nonius Apex II CCD diffractometer | 296 independent reflections |
Absorption correction: multi-scan SADABS version 2004/1 | 191 reflections with I > 2.00u(I) |
Tmin = 0.46, Tmax = 0.99 | Rint = 0.126 |
1157 measured reflections | θmax = 23.3° |
R[F2 > 2σ(F2)] = 0.125 | 95 restraints |
wR(F2) = 0.275 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.82 | Δρmax = 0.37 e Å−3 |
268 reflections | Δρmin = −0.40 e Å−3 |
47 parameters |
Refinement. The H atoms on carbon atoms (H3, H6, H7, H8, H9) were placed geometrically, then refined subject to geometrical restraints and finally allowed to ride on the host carbon. The H atoms on O1 and O5 were found in a fourier difference map and then refined subject to an O—H distance restraint of 0.82 Angstroms. Global vibration restraints were applied as well as shift limiting restraints. 022_ALERT_3_A Ratio Unique / Expected Reflections too Low ···. 0.40 027_ALERT_3_A _diffrn_reflns_theta_full (too) Low ············ 18.14 Deg. 029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ······. 0.42 088_ALERT_3_A Poor Data / Parameter Ratio ··················.. 5.70 340_ALERT_3_B Low Bond Precision on C—C bonds (x 1000) Ang ··· 24 The high pressure cell causes shading of a significant proportion of the sphere of reflections. This means that the completeness is reduced. 061_ALERT_3_A Tmax/Tmin Range Test RR' too Large ············. 0.47 SADABS corrects for all systematic errors that lead to disparities in the intensities of equivalent data. The larger than expected range of transmission is probably due to the absorption effects of the Merrill-Bassett diamond-anvil cell. 731_ALERT_1_A Bond Calc 0.82 (5), Rep 0.8200 (9) ······ 9.90 su-Rat O1 –H1 1.555 1.555 731_ALERT_1_A Bond Calc 0.82 (6), Rep 0.8200 (9) ······ 9.90 su-Rat O5 –H5 1.555 1.555 These differences in the sus are due to the restraints applied to the O—H bonds for O1—H1 and O5—H5. The values calculated for bond sus by the cif check do not include the full variance/covariance matrix, whereas the values calculated by CRYSTALS do. 023_ALERT_3_B Resolution (too) Low [sin(th)/Lambda < 0.6]···.. 23.26 Deg. 201_ALERT_2_B Isotropic non-H Atoms in Main Residue(s) ···.. = 10 210_ALERT_3_B No Anisotropic ADP's Found in CIF ············.. ? 020_ALERT_3_C The value of Rint is greater than 0.10 ········· 0.13 082_ALERT_2_C High R1 Value ·································. 0.13 084_ALERT_2_C High R2 Value ·································. 0.28 These errors are all due to the poor quality of the crystal - this is because the crystal has undergone a single-crystal to single-crystal phase transition as a result of the application of hydrostatic pressure. As such the quality of the crystal is significantly worse than before the phase transition. 430_ALERT_2_B Short Inter D···A Contact N2.. N2 = 2.80 A ng. 411_ALERT_2_C Short Inter H···H Contact H8.. H9 = 2.12 A ng. 415_ALERT_2_C Short Inter D—H.·H—X H5.. H6 = 2.15 A ng. 432_ALERT_2_C Short Inter X···Y Contact O1.. C6 = 2.95 A ng. 432_ALERT_2_C Short Inter X···Y Contact O5.. C3 = 2.98 A ng. 432_ALERT_2_C Short Inter X···Y Contact N2.. C5 = 2.96 A ng. 432_ALERT_2_C Short Inter X···Y Contact C3.. C5 = 3.13 A ng. These short intermolecular contacts are simply due to the closing up of the voids between the molecules because of the application of hydrostatic pressure. ================================================================================ Resolution & Completeness Statistics (Cumulative) ================================================================================ Theta sin(th)/Lambda Complete Expected Measured Missing ——————————————————————————– 20.82 0.500 0.402 528 212 316 23.01 0.550 0.380 708 269 439 25.24 0.600 0.375 733 275 458 |
x | y | z | Uiso*/Ueq | ||
O1 | 0.689 (3) | 0.9805 (13) | 0.6045 (7) | 0.0166 (16)* | |
N2 | 0.627 (3) | 0.8183 (15) | 0.5158 (9) | 0.0170 (15)* | |
C3 | 0.734 (4) | 0.6447 (18) | 0.5284 (11) | 0.0170 (15)* | |
C4 | 0.705 (4) | 0.4655 (18) | 0.4408 (10) | 0.0161 (14)* | |
C5 | 0.543 (4) | 0.4453 (18) | 0.3389 (11) | 0.0162 (14)* | |
C6 | 0.530 (3) | 0.2528 (18) | 0.2715 (11) | 0.0154 (15)* | |
C7 | 0.659 (3) | 0.0900 (18) | 0.2900 (11) | 0.0156 (15)* | |
C8 | 0.833 (3) | 0.1132 (18) | 0.3851 (11) | 0.0166 (15)* | |
C9 | 0.840 (3) | 0.2964 (17) | 0.4603 (10) | 0.0157 (15)* | |
O5 | 0.418 (3) | 0.6131 (12) | 0.3129 (7) | 0.0175 (16)* | |
H3 | 0.8361 | 0.6314 | 0.5980 | 0.0269* | |
H6 | 0.4181 | 0.2323 | 0.2089 | 0.0260* | |
H7 | 0.6413 | −0.0363 | 0.2403 | 0.0260* | |
H8 | 0.9323 | 0.0115 | 0.3962 | 0.0271* | |
H9 | 0.9454 | 0.3075 | 0.5279 | 0.0250* | |
H1 | 0.608 (6) | 1.077 (6) | 0.574 (6) | 0.0330* | |
H5 | 0.320 (6) | 0.602 (8) | 0.257 (5) | 0.0500* |
O1—N2 | 1.381 (12) | C6—C7 | 1.33 (3) |
O1—H1 | 0.8200 (9) | C6—H6 | 0.932 |
N2—C3 | 1.27 (2) | C7—C8 | 1.43 (2) |
C3—C4 | 1.445 (18) | C7—H7 | 0.926 |
C3—H3 | 0.931 | C8—C9 | 1.388 (18) |
C4—C5 | 1.42 (3) | C8—H8 | 0.932 |
C4—C9 | 1.38 (3) | C9—H9 | 0.932 |
C5—C6 | 1.363 (17) | O5—H5 | 0.8200 (9) |
C5—O5 | 1.32 (2) | ||
N2—O1—H1 | 96 (4) | C5—C6—H6 | 116.5 |
O1—N2—C3 | 114.2 (13) | C7—C6—H6 | 117.8 |
N2—C3—C4 | 123.3 (15) | C6—C7—C8 | 120.0 (12) |
N2—C3—H3 | 118.4 | C6—C7—H7 | 121.0 |
C4—C3—H3 | 118.3 | C8—C7—H7 | 118.9 |
C3—C4—C5 | 124 (2) | C7—C8—C9 | 114.2 (18) |
C3—C4—C9 | 117.8 (15) | C7—C8—H8 | 122.6 |
C5—C4—C9 | 117.8 (12) | C9—C8—H8 | 123.1 |
C4—C5—C6 | 116.6 (17) | C8—C9—C4 | 125.1 (13) |
C4—C5—O5 | 119.2 (11) | C8—C9—H9 | 116.8 |
C6—C5—O5 | 124.1 (14) | C4—C9—H9 | 118.0 |
C5—C6—C7 | 125.6 (15) | C5—O5—H5 | 121 (4) |
Experimental details
(273K) | (0_75GPa) | (2_37GPa) | (3_46GPa) | |
Crystal data | ||||
Chemical formula | C7H7NO2 | C7H7NO2 | C7H7NO2 | C7H7NO2 |
Mr | 137.14 | 137.14 | 137.14 | 137.14 |
Crystal system, space group | Monoclinic, P21/n | Monoclinic, P21/n | Monoclinic, P21/n | Monoclinic, P21/n |
Temperature (K) | 273 | 293 | 293 | 293 |
a, b, c (Å) | 10.346 (4), 5.0294 (17), 13.478 (5) | 10.1833 (16), 4.9766 (3), 13.0109 (15) | 9.851 (3), 4.9325 (7), 12.286 (3) | 9.7148 (16), 4.9322 (3), 12.0145 (16) |
β (°) | 112.21 (2) | 111.938 (10) | 111.09 (2) | 110.607 (11) |
V (Å3) | 649.3 (4) | 611.62 (13) | 557.0 (3) | 538.84 (12) |
Z | 4 | 4 | 4 | 4 |
Radiation type | Mo Kα | Synchrotron, λ = 0.6889 Å | Synchrotron, λ = 0.6889 Å | Synchrotron, λ = 0.6889 Å |
µ (mm−1) | 0.10 | 0.11 | 0.12 | 0.13 |
Crystal size (mm) | 0.26 × 0.10 × 0.10 | 0.18 × 0.15 × 0.10 | 0.18 × 0.15 × 0.10 | 0.18 × 0.15 × 0.10 |
Data collection | ||||
Diffractometer | Bruker Apex CCD diffractometer | Bruker-Nonius Apex II CCD diffractometer | Bruker-Nonius Apex II CCD diffractometer | Bruker-Nonius Apex II CCD diffractometer |
Absorption correction | Multi-scan SADABS version 2004/1 | Multi-scan SADABS version 2004/1 | Multi-scan SADABS version 2004/1 | Multi-scan SADABS version 2004/1 |
Tmin, Tmax | 0.79, 0.99 | 0.34, 0.99 | 0.51, 0.99 | 0.62, 0.99 |
No. of measured, independent and observed [I > 2.00u(I)] reflections | 6424, 1982, 1019 | 2288, 547, 335 | 2109, 472, 309 | 2031, 412, 317 |
Rint | 0.047 | 0.079 | 0.075 | 0.061 |
θmax (°) | 30.7 | 26.8 | 26.4 | 26.4 |
(sin θ/λ)max (Å−1) | 0.717 | 0.653 | 0.645 | 0.644 |
Refinement | ||||
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.175, 0.92 | 0.049, 0.136, 0.79 | 0.040, 0.101, 0.89 | 0.042, 0.107, 0.88 |
No. of reflections | 1982 | 514 | 437 | 412 |
No. of parameters | 97 | 97 | 97 | 97 |
No. of restraints | 84 | 84 | 84 | 84 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.23 | 0.11, −0.11 | 0.09, −0.16 | 0.13, −0.14 |
(4_55GPa) | (5_28GPa) | (5_93GPa) | |
Crystal data | |||
Chemical formula | C7H7NO2 | C7H7NO2 | C7H7NO2 |
Mr | 137.14 | 137.14 | 137.14 |
Crystal system, space group | Monoclinic, P21/n | Monoclinic, P21/n | Monoclinic, P21/n |
Temperature (K) | 293 | 293 | 293 |
a, b, c (Å) | 9.5728 (15), 4.9342 (3), 11.7537 (15) | 9.513 (2), 4.9319 (4), 11.630 (2) | 7.677 (3), 5.7731 (8), 12.159 (3) |
β (°) | 110.064 (10) | 109.859 (14) | 110.62 (2) |
V (Å3) | 521.48 (11) | 513.19 (15) | 504.4 (3) |
Z | 4 | 4 | 4 |
Radiation type | Synchrotron, λ = 0.6889 Å | Synchrotron, λ = 0.6889 Å | Synchrotron, λ = 0.6889 Å |
µ (mm−1) | 0.13 | 0.13 | 0.13 |
Crystal size (mm) | 0.18 × 0.15 × 0.10 | 0.18 × 0.15 × 0.10 | 0.18 × 0.15 × 0.10 |
Data collection | |||
Diffractometer | Bruker-Nonius Apex II CCD diffractometer | Bruker-Nonius Apex II CCD diffractometer | Bruker-Nonius Apex II CCD diffractometer |
Absorption correction | Multi-scan SADABS version 2004/1 | Multi-scan SADABS version 2004/1 | Multi-scan SADABS version 2004/1 |
Tmin, Tmax | 0.38, 0.99 | 0.42, 0.99 | 0.46, 0.99 |
No. of measured, independent and observed [I > 2.00u(I)] reflections | 1793, 417, 285 | 1925, 410, 305 | 1157, 296, 191 |
Rint | 0.069 | 0.076 | 0.126 |
θmax (°) | 26.4 | 26.4 | 23.3 |
(sin θ/λ)max (Å−1) | 0.645 | 0.645 | 0.573 |
Refinement | |||
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.112, 0.91 | 0.041, 0.094, 0.94 | 0.125, 0.275, 0.82 |
No. of reflections | 394 | 386 | 268 |
No. of parameters | 97 | 97 | 47 |
No. of restraints | 84 | 84 | 95 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.14, −0.12 | 0.13, −0.11 | 0.37, −0.40 |
Computer programs: APEX-II (Bruker-Nonius, 2000), SAINT (Bruker-Nonius, 2003), SIR92 (Altomare et al., 1994), CRYSTALS (Betteridge et al., 2003), CAMERON (Watkin et al., 1996).
O1—N2 | 1.3935 (18) | C5—O5 | 1.3502 (19) |
N2—C3 | 1.264 (2) | C5—C6 | 1.385 (2) |
C3—C4 | 1.451 (2) | C6—C7 | 1.367 (2) |
C4—C5 | 1.404 (2) | C7—C8 | 1.387 (3) |
C4—C9 | 1.388 (2) | C8—C9 | 1.373 (3) |
O1—N2—C3 | 113.07 (13) | C4—C5—C6 | 119.95 (15) |
N2—C3—C4 | 122.18 (14) | O5—C5—C6 | 118.60 (14) |
C3—C4—C5 | 121.82 (15) | C5—C6—C7 | 120.75 (17) |
C3—C4—C9 | 120.15 (15) | C6—C7—C8 | 120.05 (18) |
C5—C4—C9 | 118.02 (16) | C7—C8—C9 | 119.48 (16) |
C4—C5—O5 | 121.45 (15) | C4—C9—C8 | 121.73 (17) |
O1—N2 | 1.402 (4) | C5—O5 | 1.348 (7) |
N2—C3 | 1.246 (8) | C5—C6 | 1.390 (5) |
C3—C4 | 1.473 (5) | C6—C7 | 1.363 (9) |
C4—C5 | 1.416 (6) | C7—C8 | 1.401 (8) |
C4—C9 | 1.372 (9) | C8—C9 | 1.385 (6) |
O1—N2—C3 | 112.1 (4) | C4—C5—C6 | 119.1 (5) |
N2—C3—C4 | 122.2 (4) | O5—C5—C6 | 119.1 (4) |
C3—C4—C5 | 120.2 (6) | C5—C6—C7 | 120.6 (4) |
C3—C4—C9 | 120.9 (4) | C6—C7—C8 | 121.4 (4) |
C5—C4—C9 | 118.8 (4) | C7—C8—C9 | 117.5 (6) |
C4—C5—O5 | 121.8 (4) | C8—C9—C4 | 122.5 (4) |
O1—N2 | 1.393 (3) | C5—O5 | 1.365 (8) |
N2—C3 | 1.255 (8) | C5—C6 | 1.382 (5) |
C3—C4 | 1.470 (5) | C6—C7 | 1.377 (9) |
C4—C5 | 1.409 (7) | C7—C8 | 1.386 (8) |
C4—C9 | 1.376 (9) | C8—C9 | 1.388 (5) |
O1—N2—C3 | 111.5 (4) | C4—C5—C6 | 119.9 (6) |
N2—C3—C4 | 121.5 (4) | O5—C5—C6 | 118.8 (4) |
C3—C4—C5 | 120.8 (6) | C5—C6—C7 | 120.4 (5) |
C3—C4—C9 | 120.3 (4) | C6—C7—C8 | 120.4 (4) |
C5—C4—C9 | 118.8 (3) | C7—C8—C9 | 119.3 (6) |
C4—C5—O5 | 121.3 (3) | C8—C9—C4 | 121.2 (5) |
O1—N2 | 1.399 (3) | C5—O5 | 1.346 (7) |
N2—C3 | 1.254 (7) | C5—C6 | 1.400 (4) |
C3—C4 | 1.467 (4) | C6—C7 | 1.359 (8) |
C4—C5 | 1.415 (7) | C7—C8 | 1.396 (7) |
C4—C9 | 1.369 (8) | C8—C9 | 1.380 (4) |
O1—N2—C3 | 112.5 (3) | C4—C5—C6 | 118.8 (5) |
N2—C3—C4 | 121.4 (4) | O5—C5—C6 | 118.9 (4) |
C3—C4—C5 | 119.9 (5) | C5—C6—C7 | 120.3 (4) |
C3—C4—C9 | 120.6 (4) | C6—C7—C8 | 121.2 (3) |
C5—C4—C9 | 119.5 (3) | C7—C8—C9 | 118.7 (5) |
C4—C5—O5 | 122.3 (3) | C8—C9—C4 | 121.5 (4) |
O1—N2 | 1.393 (3) | C5—O5 | 1.353 (9) |
N2—C3 | 1.257 (10) | C5—C6 | 1.399 (5) |
C3—C4 | 1.462 (5) | C6—C7 | 1.353 (11) |
C4—C5 | 1.406 (9) | C7—C8 | 1.392 (9) |
C4—C9 | 1.352 (11) | C8—C9 | 1.392 (5) |
O1—N2—C3 | 111.8 (4) | C4—C5—C6 | 119.8 (6) |
N2—C3—C4 | 121.1 (5) | O5—C5—C6 | 118.6 (5) |
C3—C4—C5 | 120.6 (7) | C5—C6—C7 | 119.6 (5) |
C3—C4—C9 | 120.2 (5) | C6—C7—C8 | 121.4 (4) |
C5—C4—C9 | 119.1 (4) | C7—C8—C9 | 118.3 (7) |
C4—C5—O5 | 121.6 (4) | C8—C9—C4 | 121.7 (5) |
O1—N2 | 1.391 (3) | C5—O5 | 1.376 (8) |
N2—C3 | 1.271 (9) | C5—C6 | 1.389 (4) |
C3—C4 | 1.463 (5) | C6—C7 | 1.332 (10) |
C4—C5 | 1.403 (8) | C7—C8 | 1.411 (8) |
C4—C9 | 1.358 (9) | C8—C9 | 1.377 (5) |
O1—N2—C3 | 112.0 (4) | C4—C5—C6 | 119.9 (6) |
N2—C3—C4 | 121.7 (5) | O5—C5—C6 | 118.5 (5) |
C3—C4—C5 | 120.1 (6) | C5—C6—C7 | 119.4 (5) |
C3—C4—C9 | 120.4 (5) | C6—C7—C8 | 122.1 (3) |
C5—C4—C9 | 119.4 (4) | C7—C8—C9 | 117.6 (6) |
C4—C5—O5 | 121.6 (3) | C8—C9—C4 | 121.5 (5) |
O1—N2 | 1.381 (12) | C5—C6 | 1.363 (17) |
N2—C3 | 1.27 (2) | C5—O5 | 1.32 (2) |
C3—C4 | 1.445 (18) | C6—C7 | 1.33 (3) |
C4—C5 | 1.42 (3) | C7—C8 | 1.43 (2) |
C4—C9 | 1.38 (3) | C8—C9 | 1.388 (18) |
O1—N2—C3 | 114.2 (13) | C4—C5—O5 | 119.2 (11) |
N2—C3—C4 | 123.3 (15) | C6—C5—O5 | 124.1 (14) |
C3—C4—C5 | 124 (2) | C5—C6—C7 | 125.6 (15) |
C3—C4—C9 | 117.8 (15) | C6—C7—C8 | 120.0 (12) |
C5—C4—C9 | 117.8 (12) | C7—C8—C9 | 114.2 (18) |
C4—C5—C6 | 116.6 (17) | C8—C9—C4 | 125.1 (13) |
Acknowledgements
We are very grateful to Professor Angelo Gavezzotti (University of Milan) for his help and advice with our PIXEL calculations. We also thank the EPSRC and The Cambridge Crystallographic Data Centre for funding, and the CCLRC for provision of synchrotron beam-time.
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