organic compounds
Hydrogen-bonding adducts of benzenepolycarboxylic acids with N,N-dimethylformamide: benzene-1,4-dicarboxylic acid N,N-dimethylformamide disolvate, benzene-1,2,4,5-tetracarboxylic acid N,N-dimethylformamide tetrasolvate and benzene-1,2,3-tricarboxylic acid N,N-dimethylformamide disolvate monohydrate
aChemistry Department, Loughborough University, Leicestershire LE11 3TU, England
*Correspondence e-mail: m.r.j.elsegood@lboro.ac.uk
The N,N-dimethylformamide (DMF) solvates of terephthalic acid, H2TA·2DMF (C8H6O6·2C3H7NO), pyromellitic acid, H4PMA·4DMF (C10H6O8·4C3H7NO), and hemimellitic acid, H3HMA·2DMF·H2O (C9H6O6·2C3H7NO·H2O), are reported. The DMF solvate of terephthalic acid is centrosymmetric, containing one complete formula unit in the Both carboxylic acid groups hydrogen bond to a DMF molecule via an (7) O—H⋯O/C—H⋯O motif. Discrete H2TA·2DMF units are observed. The DMF solvate of pyromellitic acid is centrosymmetric and the contains half a formula unit. One of the unique carboxylic acid groups forms an (7) motif with a DMF molecule, while the other forms a linear O—H⋯O hydrogen bond to the second unique DMF molecule. Discrete H4PMA·4DMF units are observed. The DMF solvate of hemimellitic acid is non-centrosymmetric and includes a molecule of water per formula unit. Both DMF molecules form an (7) motif with the two outer carboxylic acid groups of HMA. A one-dimensional ladder structure is formed via hydrogen bonding between the central carboxylic acid group and the water molecules. The carboxylic acid (8) head-to-tail motif is not observed in any of these examples. The inclusion of DMF thereby has the effect of limiting the dimensionality of the structures.
Comment
A wide variety of solvents are available to the chemist for the dissolution and recrystallization of compounds. In the case of benzenepolycarboxylic acids, those solvents of most interest in the synthesis of solvent-inclusion ), with corrections applied for the different usages of solvents in recrystallization, has found that the greater the number of donor and acceptor sites on the solvent molecule, the more likely the solvent is to be included in organic crystals. Solvents such as N,N-dimethylformamide (DMF), dimethyl sulfoxide and dioxane, while having low usage as recrystallization solvents, have an extremely high probability of inclusion through their ability to bond to the solute molecule via `multi-point recognition' using both strong and weak hydrogen bonds.
must be capable of hydrogen bonding, containing donor and/or acceptor atoms. A recent study (Nangia & Desiraju, 1999Numerous examples of benzenepolycarboxylic acid solvent-inclusion compounds exist in the literature (for example, Dale & Elsegood, 2003b; Chatterjee et al., 2000; Herbstein & Kapon, 1978; Herbstein et al., 1978) and yet only one literature example of a single-crystal X-ray structure shows the solvation of a benzenepolycarboxylic acid by DMF, that of benzene-1,3,5-tricarboxylic acid (trimesic acid) N,N-dimethylformamide disolvate (H3TMA·2DMF; Dale & Elsegood, 2003b). In the presence of DMF, the formation of the common (8) head-to-tail carboxylic acid–acid graph-set motif (Leiserowitz, 1976; Etter, 1990; Etter & MacDonald, 1990; Bernstein et al., 1995) is prevented in this structure. Instead, two of the three carboxylic acid groups interact directly with DMF molecules in an (7) graph-set pattern, with a combination of strong O—H⋯O and weaker C—H⋯O hydrogen bonds (Desiraju & Steiner, 1999), while the third carboxyl group interacts with one of these carboxyl–DMF synthons.
We investigate here the hydrogen-bonding arrays created by the co-crystallization of DMF with benzene-1,4-dicarboxylic acid (terephthalic acid, H2TA), benzene-1,2,4,5-tetracarboxylic acid (pyromellitic acid, H4PMA) and benzene-1,2,3-tricarboxylic acid (hemimellitic acid, H3HMA). H2TA dissolves easily in DMF, one of very few examples of organic solvents capable of dissolving this acid. X-Ray analysis of colourless crystals grown from the DMF solution at approximately 258 K showed that H2TA co-crystallizes with two molecules of DMF, producing H2TA·2DMF, (I). Because of the instability of this compound under ambient conditions, the collation of supporting evidence, such as microanalysis and IR spectra, has proven impossible. The H2TA molecule in (I) does not possess an inversion centre because of rotational disorder [82.8 (4):17.2 (4)%] in the carboxyl group attached to atom C1 and complementary rotational disorder in the aldehyde group of the DMF molecule hydrogen bonded to this carboxyl group. The therefore comprises one complete formula unit (Fig. 1). The geometry of the H2TA molecule (Table 1) shows good agreement with that found previously (Bailey & Brown, 1967). The H2TA molecule is roughly planar, with the carboxyl groups only deviating slightly from coplanarity with the aromatic ring [the dihedral angles between the C1–C6 ring and the C7/O1/O2 and C8/O3/O4 planes are 0.7 (3) and 2.2 (3)°, respectively].
Both unique DMF molecules hydrogen bond to their respective carboxyl groups utilizing the same (7) synthon observed in H3TMA·2DMF (Dale & Elsegood, 2003b), with one strong O—H⋯O hydrogen bond and one complementary, weaker, C—H⋯O hydrogen bond (Table 2). Larger dihedral angles occur between the carboxyl groups and the aldehyde groups of their associated DMF molecules within the (7) motifs [the dihedral angle between C7/O1/O2 and C9/O5/H9 is 16.4 (3)°, and that between C8/O3/O4 and C12/O6/H12 is 17.3 (3)°]. No further strong hydrogen bonding exists outside the asymmetric unit.
H4PMA co-crystallizes with four molecules of DMF, yielding H4PMA·4DMF, (II), which forms readily at room temperature and shows reasonable stability under ambient conditions, in contrast to (I). The H4PMA molecule lies on a crystallographic centre of symmetry, resulting in the comprising half of a formula unit (Fig. 2). The geometry of the H4PMA molecule (Table 3) concurs with that determined previously (Dale & Elsegood, 2003c).
As expected, steric repulsions force the rotation of adjacent carboxyl groups away from the plane of the aromatic ring [the dihedral angles between the C1–C3i ring and the C4/O1/O2 and C5/O3/O4 planes are 53.75 (12) and 38.85 (13)°, respectively; symmetry code: (i) −x, 2 − y, −z].
The two independent DMF molecules in (II) have differing binding modes to the carboxyl groups: while one adopts the O—H⋯O/C—H⋯O (7) arrangement seen in both (I) and H3TMA·2DMF (Dale & Elsegood, 2003b), the second interacts via a simple linear O—H⋯O hydrogen bond utilizing the OH group of the second unique carboxyl group (Table 4). The (7) motif in this structure contains a shorter, and therefore stronger, C—H⋯O interaction than the same motif in (I). As with (I), no further strong hydrogen-bonding interactions occur outside the of (II). The co-crystallization of commercially available H3HMA·2H2O with DMF yields colourless crystals of H3HMA·2DMF·H2O, (III) (Table 5 and Fig. 3). Compound (III) was observed to desolvate over a period of a few minutes under ambient conditions, sufficient time to allow IR spectroscopic and microanalyses to be carried out. The of (III) contains a whole formula unit, in which the outer carboxyl groups of the H3HMA molecule, at atoms C1 and C3, both hydrogen bond, via the (7) synthon, to different DMF molecules, creating H3HMA·2DMF units (Table 6). These secondary building blocks are linked into a one-dimensional ladder structure (Fig. 4) by hydrogen bonding involving the molecule of water included in the asymmetric unit.
The inner carboxyl group at atom C2 lies almost perpendicular to the plane of the aromatic ring [the dihedral angle between the C1–C6 ring and the C8/O3/O4 plane is 81.54 (10)°], as observed in the dihydrate of H3HMA (Fornies-Marquina et al., 1972; Takusagawa & Shimada, 1973; Mo & Adman, 1975) and in its 2-methyl ester (Dale & Elsegood, 2003a). This carboxyl group, aided by its anti-planar conformation (Leiserowitz, 1976), forms a zigzag C22(6) chain by hydrogen bonding with one OH group of the water molecule.
A search of the Cambridge Structural Database (CSD; Version 5.25 of November 2003, plus one update; Allen, 2002) identifies 30 hits containing both carboxylic acid groups and DMF molecules, of which six are redeterminations. A more detailed search for hydrogen-bonding motifs in carboxylic acid/DMF structures [constraining the O⋯O contact distance to within the range 2–3.2 Å and the C⋯O contact distance to within the range 2.5–3.5 Å; redeterminations omitted from statistical analysis] indicates that 19 structures contain O—H⋯O hydrogen bonding between the CO2H group and the aldehyde O atom, the mean O⋯O contact distance being 2.597 (15) Å (range 2.507–2.888 Å). 13 of these 19 structures also contain C—H⋯O hydrogen bonding, producing the (7) motif observed in (I), (II) and (III). The mean O⋯O contact distance within this population [containing the (7) motif] is 2.585 (13) Å (range 2.507–2.692 Å), while the mean O—H⋯O angle is 169.4 (17)°, indicating a slight shortening in the O—H⋯O hydrogen-bond distance when C—H⋯O interactions exist and showing good agreement with the hydrogen-bond geometry observed for the same motifs in (I), (II) and (III). C—H⋯O interactions within this population have a mean C⋯O contact distance of 3.24 (3) Å (range 3.054–3.490 Å). It is interesting to note the structure of 1,1′-binaphthyl-2,2′-dicarboxylic acid bis(DMF) clathrate (CSD refcode CIWJIB10; Csoregh et al., 1986), in which two DMF binding modes are present, viz. one (7) motif and one simple linear O—H⋯O motif, just as observed in the structure of (II). The O⋯O contact distances within these motifs are 2.692 and 2.888 Å, respectively, considerably longer than those observed in (II) [2.5723 (12) and 2.5508 (13) Å, respectively], presumably because of the increased steric bulk of the solute molecule. While the CO2H/DMF (7) synthon has relatively few examples in the CSD compared with the analogous, well studied, carboxylic acid–pyridine (7) synthon (Vishweshwar et al., 2002), the majority (15) of the 21 CSD structures containing the CO2H–formyl group (7) synthon [search constraints as above; mean O⋯O = 2.599 (10) Å and mean C⋯O = 3.28 (2) Å] do involve DMF, indicating the more general carboxylic acid–formyl group as a supramolecular synthon worthy of future study.
The three examples of DMF via the (7) synthon. While the inclusion of water molecules in (III) helps produce a more extended structure, the dimensionality of the will, of course, also depend on the nature of the solute molecule. Comparisons with the two-dimensional structure of H3TMA·2DMF imply that both the number and relative positions of the carboxyl groups in the benzenepolycarboxylic acid molecules can lead to a range of hydrogen-bonded supramolecular structures with various dimensionalities.
presented here show that the presence of DMF as the co-crystallization solvent can limit the dimensionality of the resulting solid-state structure, compared with that of the parent benzenepolycarboxylic acid and its other solvent-inclusion This limitation is due to the binding of the DMF molecules to the often extensively hydrogen-bonded carboxyl groupsExperimental
X-Ray quality colourless crystals of (I) were obtained by diffusing Et2O into a solution of terephthalic acid in DMF and then placing the resulting solution in a freezer (∼258 K) overnight. The crystalline sample proved unstable under ambient conditions and hence no further data are available. X-Ray quality colourless crystals of (II) were obtained by the slow evaporation of a DMF solution of pyromellitic acid at room temperature (m.p. 312–322 K). Analysis calculated for C22H34N4O12: C 48.35, H 6.27, N 10.25%; found: C 48.66, H 6.20, N 9.90%; IR (Nujol, cm−1): νmax 3500–2500 (br, OH), 2461 (OH), 1916, 1709, 1659 and 1642 (C=O), 1556 (C=C), 1255 and 1106 (C—O), 922, 816, 758 and 672 (aromatic C—H). X-Ray quality colourless crystals of (III) were obtained by the slow evaporation of a DMF solution of hemimellitic acid dihydrate at room temperature [m.p. 323–325 K (liquid seen), 393–397 K (desolvated) and 463 K (liquified)]. Analysis calculated for C15H22N2O9: C 48.13, H 5.92, N 7.48%; found: C 47.82, H 6.25, N 7.93%; IR (KBr, cm−1): νmax 3443 (br, OH), 3079 (aromatic C—H), 2976 and 2936 (Csp3—H), 2777 (aldehyde C—H), 1704 and 1622 (s, C=O), 1583 (C=C), 1460, 1436, 1425, 1414 and 1374 (Csp3—H), 1308, 1270, 1210, 1175, 1157, 1112, 1064, 1020 and 1008 (C—O), 905, 810, 792 and 782 (aromatic C—H), 678, 671.
Compound (I)
Crystal data
|
Data collection
|
Refinement
|
|
|
Compound (II)
Crystal data
|
Refinement
|
|
|
Compound (III)
Crystal data
|
Refinement
|
|
In (I)–(III), aromatic/aldehyde (C—H = 0.95 Å) and methyl (C—H = 0.98 Å) H atoms were positioned geometrically and treated using a riding model, while the coordinates of O-bound H atoms were refined freely in (II) and (III). The Uiso(H) values were set at 1.2Ueq(C) for aromatic and aldehyde H atoms, and at 1.5Ueq(C,O) for methyl and O-bound H atoms. Geometric restraints were applied to the disordered aldehyde group and the hydroxy bond lengths in (I). Friedel pairs (1811) were merged in the of (III) as a consequence of the use of Mo Kα X-ray radiation, and hence the was not determined.
For all compounds, data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2000); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs.
Supporting information
10.1107/S010827010400976X/fg1747sup1.cif
contains datablocks global, I, II, III. DOI:Structure factors: contains datablock I. DOI: 10.1107/S010827010400976X/fg1747Isup2.hkl
Structure factors: contains datablock II. DOI: 10.1107/S010827010400976X/fg1747IIsup3.hkl
Structure factors: contains datablock III. DOI: 10.1107/S010827010400976X/fg1747IIIsup4.hkl
X-ray-quality colourless crystals of (I) were obtained by diffusing Et2O into a solution of terephthalic acid in DMF and then placing the resulting solution in a freezer (ca 258 K) overnight. The crystalline sample proved unstable at ambient conditions, and hence no further data are available. X-ray-quality colourless crystals of (II) were obtained from the slow evaporation of a DMF solution of pyromellitic acid at room temperature. M.p. 312–322 K. Analysis calculated for C22H34N4O12: C 48.35, H 6.27, N 10.25%; found: C 48.66, H 6.20, N 9.90%; IR (Nujol, νmax, cm−1) 3500–2500 (br, OH), 2461 (OH), 1916, 1709, 1659 and 1642 (C═O), 1556 (C═C), 1255 and 1106 (C—O), 922, 816, 758 and 672 (aromatic C—H). X-ray-quality colourless crystals of (III) were obtained from the slow evaporation of a DMF solution of pyromellitic acid at room temperature. M.p. 323–325 K (liquid seen), 393–397 K (desolvated), 463 K (liquified). Analysis calculated for C15H22N2O9: C 48.13, H 5.92, N 7.48%; found: C 47.82, H 6.25, N 7.93%; IR (KBr, νmax, cm−1) 3443 (br, OH), 3079 (aromatic C—H), 2976 and 2936 (sp3 C—H), 2777 (aldehyde C—H), 1704 and 1622 (s, C═O), 1583 (C═C), 1460, 1436, 1425, 1414 and 1374 (sp3 C—H), 1308, 1270, 1210, 1175, 1157, 1112, 1064, 1020 and 1008 (C—O), 905, 810, 792 and 782 (aromatic C—H), 678, 671.
Aromatic and aldehyde H (C—H distance = 0.95 Å) and methyl H (C—H distance = 0.98 Å) atoms were placed in geometric positions using a riding model in (I)–(III), while the coordinates of O-bound H atoms were refined freely in (II) and (III). The Uiso(H) values were set to 1.2Ueq(C) for aryl and aldehyde H atoms, and 1.5Ueq(C,O) for methyl and O-bound H atoms. Geometric restraints were applied to the disordered aldehyde group and hydroxy bond lengths in (I). Friedel pairs (1811) were merged in the α X-ray radiation and hence the was not determined.
of (III) as a consequence of the use of Mo KFor all compounds, data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2000); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs.Fig. 1. A view of (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level, H atoms are represented by circles of arbitrary radius and hydrogen bonds are shown as dashed lines. | |
Fig. 2. A view of (II), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level, H atoms are represented by circles of arbitrary radius and hydrogen bonds are shown as dashed lines. [Symmetry code: (i) −x, 2 − y, −z.] | |
Fig. 3. A view of (III), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level, H atoms are represented by circles of arbitrary radius and hydrogen bonds are shown as dashed lines. | |
Fig. 4. The one-dimensional ladder structure of (III), maintained by hydrogen bonds (shown as dashed lines). H atoms not involved in hydrogen bonding have been omitted for clarity. |
C8H6O4·2C3H7NO | F(000) = 1328 |
Mr = 312.32 | Dx = 1.319 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 3980 reflections |
a = 19.663 (4) Å | θ = 2.5–27.8° |
b = 7.5404 (13) Å | µ = 0.10 mm−1 |
c = 21.929 (4) Å | T = 150 K |
β = 104.661 (3)° | Block, colourless |
V = 3145.5 (10) Å3 | 0.34 × 0.28 × 0.18 mm |
Z = 8 |
Bruker SMART 1000 CCD diffractometer | 2318 reflections with I > 2σ(I) |
Radiation source: sealed tube | Rint = 0.044 |
Graphite monochromator | θmax = 27.5°, θmin = 2.1° |
ω scans | h = −25→25 |
12434 measured reflections | k = −9→9 |
3577 independent reflections | l = −28→27 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: structure-invariant direct methods |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: Geom except OH coords freely refined |
wR(F2) = 0.144 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0554P)2 + 2.6815P] where P = (Fo2 + 2Fc2)/3 |
3577 reflections | (Δ/σ)max < 0.001 |
222 parameters | Δρmax = 0.27 e Å−3 |
5 restraints | Δρmin = −0.18 e Å−3 |
C8H6O4·2C3H7NO | V = 3145.5 (10) Å3 |
Mr = 312.32 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 19.663 (4) Å | µ = 0.10 mm−1 |
b = 7.5404 (13) Å | T = 150 K |
c = 21.929 (4) Å | 0.34 × 0.28 × 0.18 mm |
β = 104.661 (3)° |
Bruker SMART 1000 CCD diffractometer | 2318 reflections with I > 2σ(I) |
12434 measured reflections | Rint = 0.044 |
3577 independent reflections |
R[F2 > 2σ(F2)] = 0.050 | 5 restraints |
wR(F2) = 0.144 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.27 e Å−3 |
3577 reflections | Δρmin = −0.18 e Å−3 |
222 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.08996 (9) | 0.4816 (2) | 0.12585 (8) | 0.0267 (4) | |
C2 | 0.13670 (10) | 0.4234 (3) | 0.18115 (8) | 0.0311 (4) | |
H2A | 0.1455 | 0.4949 | 0.2180 | 0.037* | |
C3 | 0.17034 (10) | 0.2617 (3) | 0.18240 (8) | 0.0308 (4) | |
H3 | 0.2021 | 0.2224 | 0.2202 | 0.037* | |
C4 | 0.15803 (9) | 0.1568 (3) | 0.12877 (8) | 0.0266 (4) | |
C5 | 0.11138 (9) | 0.2154 (3) | 0.07347 (8) | 0.0284 (4) | |
H5 | 0.1026 | 0.1441 | 0.0366 | 0.034* | |
C6 | 0.07778 (9) | 0.3770 (3) | 0.07211 (8) | 0.0291 (4) | |
H6 | 0.0462 | 0.4165 | 0.0342 | 0.035* | |
C7 | 0.05241 (10) | 0.6548 (3) | 0.12306 (9) | 0.0320 (4) | |
O1 | 0.01091 (8) | 0.7059 (2) | 0.07458 (7) | 0.0441 (4) | |
H1X | 0.004 (8) | 0.827 (5) | 0.069 (7) | 0.066* | 0.172 (4) |
O2 | 0.06678 (8) | 0.7443 (2) | 0.17520 (7) | 0.0476 (4) | |
H2 | 0.0400 (16) | 0.847 (4) | 0.1725 (15) | 0.071* | 0.828 (4) |
C8 | 0.19606 (9) | −0.0154 (3) | 0.13084 (8) | 0.0304 (4) | |
O3 | 0.23846 (8) | −0.0690 (2) | 0.17766 (6) | 0.0412 (4) | |
O4 | 0.17991 (8) | −0.1005 (2) | 0.07687 (7) | 0.0429 (4) | |
H4 | 0.2050 (14) | −0.206 (3) | 0.0783 (12) | 0.064* | |
C9 | −0.03297 (10) | 1.1015 (3) | 0.12136 (10) | 0.0341 (5) | |
H9 | −0.0294 | 1.0450 | 0.0836 | 0.041* | 0.828 (4) |
H9X | −0.0017 | 1.0693 | 0.1603 | 0.041* | 0.172 (4) |
O5 | −0.00076 (9) | 1.0362 (2) | 0.17247 (8) | 0.0405 (6) | 0.828 (4) |
O5X | −0.0381 (4) | 1.0044 (11) | 0.0715 (3) | 0.038 (2) | 0.172 (4) |
N1 | −0.07190 (8) | 1.2457 (2) | 0.11704 (7) | 0.0314 (4) | |
C10 | −0.10576 (11) | 1.3241 (3) | 0.05625 (10) | 0.0414 (5) | |
H10A | −0.0944 | 1.2540 | 0.0225 | 0.062* | |
H10B | −0.0889 | 1.4459 | 0.0546 | 0.062* | |
H10C | −0.1568 | 1.3253 | 0.0507 | 0.062* | |
C11 | −0.07987 (12) | 1.3359 (3) | 0.17322 (10) | 0.0426 (5) | |
H11A | −0.0626 | 1.2593 | 0.2100 | 0.064* | |
H11B | −0.1296 | 1.3630 | 0.1688 | 0.064* | |
H11C | −0.0527 | 1.4464 | 0.1789 | 0.064* | |
C12 | 0.27680 (10) | −0.4584 (3) | 0.12466 (9) | 0.0320 (4) | |
H12 | 0.2723 | −0.4023 | 0.1622 | 0.038* | |
O6 | 0.24528 (7) | −0.39171 (19) | 0.07377 (6) | 0.0393 (4) | |
N2 | 0.31611 (8) | −0.6020 (2) | 0.13023 (7) | 0.0323 (4) | |
C13 | 0.35034 (12) | −0.6745 (3) | 0.19196 (10) | 0.0432 (5) | |
H13A | 0.3379 | −0.6029 | 0.2248 | 0.065* | |
H13B | 0.4014 | −0.6724 | 0.1978 | 0.065* | |
H13C | 0.3347 | −0.7970 | 0.1947 | 0.065* | |
C14 | 0.32418 (12) | −0.6969 (3) | 0.07519 (10) | 0.0438 (5) | |
H14A | 0.2984 | −0.8092 | 0.0715 | 0.066* | |
H14B | 0.3741 | −0.7210 | 0.0793 | 0.066* | |
H14C | 0.3055 | −0.6248 | 0.0375 | 0.066* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0218 (9) | 0.0304 (10) | 0.0276 (9) | −0.0011 (7) | 0.0059 (7) | 0.0011 (8) |
C2 | 0.0311 (10) | 0.0363 (11) | 0.0250 (9) | −0.0004 (8) | 0.0057 (8) | −0.0042 (8) |
C3 | 0.0276 (9) | 0.0389 (11) | 0.0236 (9) | 0.0014 (8) | 0.0025 (7) | 0.0032 (8) |
C4 | 0.0220 (9) | 0.0315 (10) | 0.0263 (9) | −0.0003 (7) | 0.0062 (7) | 0.0029 (8) |
C5 | 0.0266 (9) | 0.0338 (10) | 0.0244 (9) | 0.0007 (8) | 0.0057 (7) | −0.0023 (8) |
C6 | 0.0250 (9) | 0.0365 (11) | 0.0245 (9) | 0.0019 (8) | 0.0041 (7) | 0.0023 (8) |
C7 | 0.0264 (9) | 0.0350 (11) | 0.0344 (10) | −0.0021 (8) | 0.0075 (8) | −0.0035 (8) |
O1 | 0.0488 (9) | 0.0397 (8) | 0.0351 (8) | 0.0122 (7) | −0.0057 (7) | −0.0020 (7) |
O2 | 0.0539 (10) | 0.0448 (10) | 0.0354 (8) | 0.0185 (8) | −0.0045 (7) | −0.0112 (7) |
C8 | 0.0261 (9) | 0.0353 (11) | 0.0298 (10) | 0.0007 (8) | 0.0069 (8) | 0.0026 (8) |
O3 | 0.0414 (8) | 0.0397 (8) | 0.0351 (8) | 0.0085 (7) | −0.0037 (6) | 0.0033 (6) |
O4 | 0.0479 (9) | 0.0407 (9) | 0.0339 (8) | 0.0173 (7) | −0.0015 (7) | −0.0056 (7) |
C9 | 0.0328 (10) | 0.0326 (11) | 0.0383 (11) | −0.0026 (9) | 0.0115 (9) | −0.0034 (9) |
O5 | 0.0420 (11) | 0.0366 (11) | 0.0424 (11) | 0.0058 (8) | 0.0099 (8) | 0.0005 (8) |
O5X | 0.036 (5) | 0.035 (5) | 0.041 (5) | 0.006 (4) | 0.006 (4) | −0.004 (4) |
N1 | 0.0293 (8) | 0.0305 (9) | 0.0348 (9) | −0.0024 (7) | 0.0090 (7) | −0.0029 (7) |
C10 | 0.0417 (12) | 0.0381 (12) | 0.0426 (12) | 0.0008 (10) | 0.0077 (9) | 0.0031 (10) |
C11 | 0.0442 (12) | 0.0416 (13) | 0.0434 (12) | 0.0011 (10) | 0.0139 (10) | −0.0095 (10) |
C12 | 0.0319 (10) | 0.0300 (10) | 0.0349 (10) | −0.0014 (8) | 0.0099 (8) | −0.0003 (8) |
O6 | 0.0407 (8) | 0.0362 (8) | 0.0392 (8) | 0.0093 (7) | 0.0070 (6) | 0.0045 (6) |
N2 | 0.0329 (9) | 0.0310 (9) | 0.0332 (9) | 0.0013 (7) | 0.0086 (7) | 0.0046 (7) |
C13 | 0.0427 (12) | 0.0436 (13) | 0.0409 (11) | 0.0037 (10) | 0.0061 (9) | 0.0118 (10) |
C14 | 0.0475 (13) | 0.0405 (12) | 0.0457 (12) | 0.0121 (10) | 0.0159 (10) | 0.0012 (10) |
C1—C6 | 1.388 (3) | C9—H9 | 0.9500 |
C1—C2 | 1.394 (2) | C9—H9X | 0.9501 |
C1—C7 | 1.494 (3) | N1—C11 | 1.450 (2) |
C2—C3 | 1.384 (3) | N1—C10 | 1.456 (3) |
C2—H2A | 0.9500 | C10—H10A | 0.9800 |
C3—C4 | 1.387 (3) | C10—H10B | 0.9800 |
C3—H3 | 0.9500 | C10—H10C | 0.9800 |
C4—C5 | 1.394 (2) | C11—H11A | 0.9800 |
C4—C8 | 1.493 (3) | C11—H11B | 0.9800 |
C5—C6 | 1.383 (3) | C11—H11C | 0.9800 |
C5—H5 | 0.9500 | C12—O6 | 1.238 (2) |
C6—H6 | 0.9500 | C12—N2 | 1.318 (2) |
C7—O1 | 1.227 (2) | C12—H12 | 0.9500 |
C7—O2 | 1.296 (2) | N2—C14 | 1.446 (3) |
O1—H1X | 0.93 (3) | N2—C13 | 1.457 (2) |
O2—H2 | 0.93 (3) | C13—H13A | 0.9800 |
C8—O3 | 1.216 (2) | C13—H13B | 0.9800 |
C8—O4 | 1.313 (2) | C13—H13C | 0.9800 |
O4—H4 | 0.93 (3) | C14—H14A | 0.9800 |
C9—O5 | 1.241 (3) | C14—H14B | 0.9800 |
C9—O5X | 1.298 (7) | C14—H14C | 0.9800 |
C9—N1 | 1.319 (3) | ||
C6—C1—C2 | 119.60 (18) | H9—C9—H9X | 119.8 |
C6—C1—C7 | 119.00 (16) | C9—N1—C11 | 120.73 (18) |
C2—C1—C7 | 121.40 (17) | C9—N1—C10 | 121.52 (17) |
C3—C2—C1 | 120.06 (17) | C11—N1—C10 | 117.69 (17) |
C3—C2—H2A | 120.0 | N1—C10—H10A | 109.5 |
C1—C2—H2A | 120.0 | N1—C10—H10B | 109.5 |
C2—C3—C4 | 120.39 (17) | H10A—C10—H10B | 109.5 |
C2—C3—H3 | 119.8 | N1—C10—H10C | 109.5 |
C4—C3—H3 | 119.8 | H10A—C10—H10C | 109.5 |
C3—C4—C5 | 119.44 (17) | H10B—C10—H10C | 109.5 |
C3—C4—C8 | 119.45 (16) | N1—C11—H11A | 109.5 |
C5—C4—C8 | 121.10 (16) | N1—C11—H11B | 109.5 |
C6—C5—C4 | 120.25 (17) | H11A—C11—H11B | 109.5 |
C6—C5—H5 | 119.9 | N1—C11—H11C | 109.5 |
C4—C5—H5 | 119.9 | H11A—C11—H11C | 109.5 |
C5—C6—C1 | 120.25 (17) | H11B—C11—H11C | 109.5 |
C5—C6—H6 | 119.9 | O6—C12—N2 | 124.43 (18) |
C1—C6—H6 | 119.9 | O6—C12—H12 | 117.8 |
O1—C7—O2 | 123.32 (19) | N2—C12—H12 | 117.8 |
O1—C7—C1 | 121.58 (17) | C12—N2—C14 | 120.99 (17) |
O2—C7—C1 | 115.10 (16) | C12—N2—C13 | 121.11 (17) |
C7—O1—C9 | 100.45 (13) | C14—N2—C13 | 117.84 (18) |
C7—O1—H1X | 118 (9) | N2—C13—H13A | 109.5 |
C7—O2—H2 | 113 (2) | N2—C13—H13B | 109.5 |
O3—C8—O4 | 123.80 (19) | H13A—C13—H13B | 109.5 |
O3—C8—C4 | 123.07 (17) | N2—C13—H13C | 109.5 |
O4—C8—C4 | 113.13 (15) | H13A—C13—H13C | 109.5 |
C8—O3—C12 | 99.59 (13) | H13B—C13—H13C | 109.5 |
C8—O4—H4 | 112.4 (16) | N2—C14—H14A | 109.5 |
O5—C9—N1 | 123.10 (19) | N2—C14—H14B | 109.5 |
O5X—C9—N1 | 119.0 (4) | H14A—C14—H14B | 109.5 |
O5—C9—H9 | 118.4 | N2—C14—H14C | 109.5 |
N1—C9—H9 | 118.4 | H14A—C14—H14C | 109.5 |
O5X—C9—H9X | 120.5 | H14B—C14—H14C | 109.5 |
N1—C9—H9X | 120.5 | ||
C6—C1—C2—C3 | −0.4 (3) | C2—C1—C7—O2 | 0.1 (3) |
C7—C1—C2—C3 | 179.54 (17) | C3—C4—C8—O3 | −0.6 (3) |
C1—C2—C3—C4 | 0.2 (3) | C5—C4—C8—O3 | 178.07 (18) |
C2—C3—C4—C5 | 0.0 (3) | C3—C4—C8—O4 | −179.52 (17) |
C2—C3—C4—C8 | 178.70 (17) | C5—C4—C8—O4 | −0.8 (2) |
C3—C4—C5—C6 | 0.1 (3) | O4—C8—O3—C12 | −4.0 (2) |
C8—C4—C5—C6 | −178.61 (17) | C4—C8—O3—C12 | 177.25 (15) |
C4—C5—C6—C1 | −0.3 (3) | O5—C9—N1—C11 | −0.8 (3) |
C2—C1—C6—C5 | 0.5 (3) | O5X—C9—N1—C11 | 166.2 (5) |
C7—C1—C6—C5 | −179.48 (16) | O5—C9—N1—C10 | 176.5 (2) |
C6—C1—C7—O1 | 0.4 (3) | O5X—C9—N1—C10 | −16.5 (5) |
C2—C1—C7—O1 | −179.54 (19) | O6—C12—N2—C14 | −1.4 (3) |
C6—C1—C7—O2 | −179.94 (17) | O6—C12—N2—C13 | −178.66 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O5 | 0.93 (3) | 1.64 (3) | 2.563 (2) | 175 (3) |
O4—H4···O6 | 0.93 (3) | 1.63 (3) | 2.554 (2) | 175 (2) |
O1—H1X···O5X | 0.93 (3) | 1.58 (8) | 2.442 (8) | 152 (14) |
C9—H9X···O2 | 0.95 | 2.78 | 3.365 (3) | 121 |
C9—H9···O1 | 0.95 | 2.70 | 3.339 (3) | 125 |
C12—H12···O3 | 0.95 | 2.64 | 3.314 (3) | 128 |
C10H6O8·4C3H7NO | F(000) = 580 |
Mr = 546.53 | Dx = 1.352 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 5456 reflections |
a = 12.8905 (10) Å | θ = 2.6–28.6° |
b = 7.9398 (6) Å | µ = 0.11 mm−1 |
c = 13.8078 (10) Å | T = 150 K |
β = 108.162 (2)° | Block, colourless |
V = 1342.79 (17) Å3 | 0.69 × 0.39 × 0.08 mm |
Z = 2 |
Bruker SMART 1000 CCD diffractometer | 3213 independent reflections |
Radiation source: sealed tube | 2522 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
ω scans | θmax = 28.9°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | h = −16→17 |
Tmin = 0.936, Tmax = 0.991 | k = −10→10 |
11290 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: structure-invariant direct methods |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: Geom except OH coords freely refined |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0474P)2 + 0.3704P] where P = (Fo2 + 2Fc2)/3 |
3213 reflections | (Δ/σ)max < 0.001 |
182 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
C10H6O8·4C3H7NO | V = 1342.79 (17) Å3 |
Mr = 546.53 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 12.8905 (10) Å | µ = 0.11 mm−1 |
b = 7.9398 (6) Å | T = 150 K |
c = 13.8078 (10) Å | 0.69 × 0.39 × 0.08 mm |
β = 108.162 (2)° |
Bruker SMART 1000 CCD diffractometer | 3213 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | 2522 reflections with I > 2σ(I) |
Tmin = 0.936, Tmax = 0.991 | Rint = 0.017 |
11290 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.31 e Å−3 |
3213 reflections | Δρmin = −0.18 e Å−3 |
182 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | −0.02936 (9) | 1.15687 (14) | 0.02955 (8) | 0.0237 (2) | |
C2 | 0.07958 (9) | 1.11810 (15) | 0.04362 (9) | 0.0253 (2) | |
H2A | 0.1343 | 1.1992 | 0.0738 | 0.030* | |
C3 | 0.10990 (9) | 0.96287 (15) | 0.01433 (8) | 0.0240 (2) | |
C4 | −0.05675 (10) | 1.33162 (15) | 0.05531 (9) | 0.0267 (3) | |
O1 | −0.11925 (7) | 1.42163 (12) | −0.00569 (8) | 0.0390 (2) | |
O2 | −0.00097 (9) | 1.37265 (12) | 0.14924 (7) | 0.0381 (2) | |
H2 | −0.0168 (15) | 1.481 (3) | 0.1616 (14) | 0.057* | |
C5 | 0.22954 (9) | 0.93294 (16) | 0.03142 (9) | 0.0275 (3) | |
O3 | 0.29836 (7) | 0.98649 (16) | 0.10621 (8) | 0.0494 (3) | |
O4 | 0.25066 (7) | 0.85283 (12) | −0.04312 (7) | 0.0332 (2) | |
H4 | 0.3257 (15) | 0.832 (2) | −0.0226 (13) | 0.050* | |
C6 | 0.51767 (10) | 0.84451 (16) | 0.07839 (10) | 0.0309 (3) | |
H6 | 0.4884 | 0.9216 | 0.1156 | 0.037* | |
O5 | 0.45481 (7) | 0.78348 (12) | −0.00169 (7) | 0.0346 (2) | |
N1 | 0.62271 (9) | 0.80804 (15) | 0.11438 (9) | 0.0336 (3) | |
C7 | 0.67272 (12) | 0.6921 (2) | 0.06036 (13) | 0.0451 (4) | |
H7A | 0.6494 | 0.5768 | 0.0683 | 0.068* | |
H7B | 0.7524 | 0.6998 | 0.0886 | 0.068* | |
H7C | 0.6500 | 0.7216 | −0.0122 | 0.068* | |
C8 | 0.69038 (12) | 0.8810 (2) | 0.21002 (12) | 0.0462 (4) | |
H8A | 0.6466 | 0.9597 | 0.2358 | 0.069* | |
H8B | 0.7518 | 0.9414 | 0.1985 | 0.069* | |
H8C | 0.7182 | 0.7912 | 0.2600 | 0.069* | |
C9 | 0.06223 (11) | 1.75010 (17) | 0.22678 (10) | 0.0322 (3) | |
H9 | 0.1213 | 1.6993 | 0.2103 | 0.039* | |
O6 | −0.02586 (8) | 1.67321 (12) | 0.20340 (8) | 0.0402 (2) | |
N2 | 0.07929 (8) | 1.89666 (14) | 0.27270 (8) | 0.0308 (2) | |
C10 | −0.00745 (13) | 1.9791 (2) | 0.30094 (14) | 0.0483 (4) | |
H10A | −0.0405 | 2.0668 | 0.2509 | 0.072* | |
H10B | 0.0226 | 2.0301 | 0.3685 | 0.072* | |
H10C | −0.0631 | 1.8960 | 0.3024 | 0.072* | |
C11 | 0.18364 (13) | 1.9831 (2) | 0.29769 (13) | 0.0537 (4) | |
H11A | 0.2338 | 1.9184 | 0.2714 | 0.081* | |
H11B | 0.2145 | 1.9938 | 0.3719 | 0.081* | |
H11C | 0.1730 | 2.0954 | 0.2667 | 0.081* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0246 (6) | 0.0242 (6) | 0.0208 (5) | −0.0013 (4) | 0.0048 (4) | 0.0000 (4) |
C2 | 0.0222 (5) | 0.0265 (6) | 0.0250 (6) | −0.0047 (4) | 0.0042 (4) | −0.0032 (4) |
C3 | 0.0210 (5) | 0.0278 (6) | 0.0213 (5) | −0.0013 (4) | 0.0039 (4) | −0.0002 (4) |
C4 | 0.0246 (6) | 0.0242 (6) | 0.0310 (6) | −0.0033 (4) | 0.0082 (5) | −0.0017 (5) |
O1 | 0.0317 (5) | 0.0301 (5) | 0.0462 (6) | 0.0051 (4) | −0.0009 (4) | −0.0006 (4) |
O2 | 0.0552 (6) | 0.0244 (5) | 0.0296 (5) | 0.0024 (4) | 0.0058 (4) | −0.0056 (4) |
C5 | 0.0230 (5) | 0.0288 (6) | 0.0290 (6) | −0.0012 (5) | 0.0056 (5) | −0.0020 (5) |
O3 | 0.0228 (5) | 0.0757 (8) | 0.0434 (6) | 0.0007 (5) | 0.0010 (4) | −0.0262 (6) |
O4 | 0.0231 (4) | 0.0435 (5) | 0.0326 (5) | −0.0004 (4) | 0.0082 (4) | −0.0086 (4) |
C6 | 0.0284 (6) | 0.0288 (6) | 0.0375 (7) | 0.0008 (5) | 0.0131 (5) | 0.0078 (5) |
O5 | 0.0274 (4) | 0.0382 (5) | 0.0385 (5) | 0.0029 (4) | 0.0108 (4) | 0.0020 (4) |
N1 | 0.0256 (5) | 0.0371 (6) | 0.0386 (6) | 0.0006 (4) | 0.0108 (5) | 0.0091 (5) |
C7 | 0.0318 (7) | 0.0540 (9) | 0.0529 (9) | 0.0098 (6) | 0.0179 (7) | 0.0079 (7) |
C8 | 0.0327 (7) | 0.0575 (10) | 0.0440 (8) | −0.0058 (7) | 0.0057 (6) | 0.0060 (7) |
C9 | 0.0325 (6) | 0.0339 (7) | 0.0299 (6) | 0.0087 (5) | 0.0091 (5) | −0.0002 (5) |
O6 | 0.0440 (6) | 0.0277 (5) | 0.0448 (6) | −0.0034 (4) | 0.0079 (4) | −0.0111 (4) |
N2 | 0.0254 (5) | 0.0314 (6) | 0.0328 (6) | −0.0035 (4) | 0.0050 (4) | −0.0032 (4) |
C10 | 0.0438 (8) | 0.0341 (8) | 0.0655 (10) | 0.0038 (6) | 0.0148 (7) | −0.0185 (7) |
C11 | 0.0383 (8) | 0.0701 (11) | 0.0449 (9) | −0.0239 (8) | 0.0015 (7) | 0.0045 (8) |
C1—C2 | 1.3909 (16) | C7—H7A | 0.9800 |
C1—C3i | 1.3988 (16) | C7—H7B | 0.9800 |
C1—C4 | 1.5015 (16) | C7—H7C | 0.9800 |
C2—C3 | 1.3906 (17) | C8—H8A | 0.9800 |
C2—H2A | 0.9500 | C8—H8B | 0.9800 |
C3—C5 | 1.5045 (16) | C8—H8C | 0.9800 |
C4—O1 | 1.2025 (15) | C9—O6 | 1.2400 (16) |
C4—O2 | 1.3130 (15) | C9—N2 | 1.3105 (17) |
O2—H2 | 0.91 (2) | C9—H9 | 0.9500 |
C5—O3 | 1.2097 (15) | N2—C10 | 1.4499 (18) |
C5—O4 | 1.3087 (15) | N2—C11 | 1.4527 (17) |
O4—H4 | 0.935 (18) | C10—H10A | 0.9800 |
C6—O5 | 1.2471 (16) | C10—H10B | 0.9800 |
C6—N1 | 1.3208 (16) | C10—H10C | 0.9800 |
C6—H6 | 0.9500 | C11—H11A | 0.9800 |
N1—C7 | 1.4560 (19) | C11—H11B | 0.9800 |
N1—C8 | 1.4569 (19) | C11—H11C | 0.9800 |
C2—C1—C3i | 119.40 (11) | H7B—C7—H7C | 109.5 |
C2—C1—C4 | 118.24 (10) | N1—C8—H8A | 109.5 |
C3i—C1—C4 | 122.21 (10) | N1—C8—H8B | 109.5 |
C3—C2—C1 | 121.24 (10) | H8A—C8—H8B | 109.5 |
C3—C2—H2A | 119.4 | N1—C8—H8C | 109.5 |
C1—C2—H2A | 119.4 | H8A—C8—H8C | 109.5 |
C2—C3—C1i | 119.37 (10) | H8B—C8—H8C | 109.5 |
C2—C3—C5 | 117.49 (10) | O6—C9—N2 | 124.41 (12) |
C1i—C3—C5 | 123.14 (11) | N2—C9—O2 | 168.49 (10) |
O1—C4—O2 | 125.83 (12) | O6—C9—H9 | 117.8 |
O1—C4—C1 | 122.61 (11) | N2—C9—H9 | 117.8 |
O2—C4—C1 | 111.50 (10) | C9—N2—C10 | 120.24 (11) |
C4—O2—H2 | 109.5 (12) | C9—N2—C11 | 122.54 (13) |
O3—C5—O4 | 124.42 (11) | C10—N2—C11 | 117.22 (13) |
O3—C5—C3 | 121.44 (11) | N2—C10—H10A | 109.5 |
O4—C5—C3 | 114.07 (10) | N2—C10—H10B | 109.5 |
C5—O4—H4 | 107.4 (11) | H10A—C10—H10B | 109.5 |
O5—C6—H6 | 118.1 | N2—C10—H10C | 109.5 |
N1—C6—H6 | 118.1 | H10A—C10—H10C | 109.5 |
C6—N1—C7 | 120.77 (12) | H10B—C10—H10C | 109.5 |
C6—N1—C8 | 120.52 (12) | N2—C11—H11A | 109.5 |
C7—N1—C8 | 118.71 (12) | N2—C11—H11B | 109.5 |
N1—C7—H7A | 109.5 | H11A—C11—H11B | 109.5 |
N1—C7—H7B | 109.5 | N2—C11—H11C | 109.5 |
H7A—C7—H7B | 109.5 | H11A—C11—H11C | 109.5 |
N1—C7—H7C | 109.5 | H11B—C11—H11C | 109.5 |
H7A—C7—H7C | 109.5 | ||
C3i—C1—C2—C3 | 0.38 (19) | C2—C3—C5—O3 | 37.22 (18) |
C4—C1—C2—C3 | −175.22 (11) | C1i—C3—C5—O3 | −143.11 (14) |
C1—C2—C3—C1i | −0.38 (19) | C2—C3—C5—O4 | −139.67 (11) |
C1—C2—C3—C5 | 179.30 (11) | C1i—C3—C5—O4 | 40.01 (16) |
C2—C1—C4—O1 | 122.73 (13) | O5—C6—N1—C7 | 0.6 (2) |
C3i—C1—C4—O1 | −52.74 (17) | O5—C6—N1—C8 | −178.33 (12) |
C2—C1—C4—O2 | −54.62 (14) | O6—C9—N2—C10 | 0.8 (2) |
C3i—C1—C4—O2 | 129.91 (12) | O6—C9—N2—C11 | −179.32 (13) |
Symmetry code: (i) −x, −y+2, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4···O5 | 0.935 (18) | 1.643 (19) | 2.5723 (12) | 172.4 (17) |
O2—H2···O6 | 0.91 (2) | 1.65 (2) | 2.5508 (13) | 169.3 (18) |
C6—H6···O3 | 0.95 | 2.47 | 3.1761 (16) | 132 |
C9H6O6·2C3H7NO·H2O | F(000) = 792 |
Mr = 374.35 | Dx = 1.366 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 8092 reflections |
a = 13.8441 (15) Å | θ = 2.5–28.3° |
b = 19.745 (2) Å | µ = 0.11 mm−1 |
c = 6.6606 (7) Å | T = 150 K |
V = 1820.7 (3) Å3 | Block, colourless |
Z = 4 | 0.57 × 0.16 × 0.12 mm |
Bruker SMART 1000 CCD diffractometer | 2593 independent reflections |
Radiation source: sealed tube | 2297 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω scans | θmax = 29.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | h = −18→18 |
Tmin = 0.929, Tmax = 0.990 | k = −26→26 |
16155 measured reflections | l = −9→8 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: structure-invariant direct methods |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: Geom except OH coords freely refined |
wR(F2) = 0.138 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0823P)2 + 0.6452P] where P = (Fo2 + 2Fc2)/3 |
2593 reflections | (Δ/σ)max < 0.001 |
254 parameters | Δρmax = 0.66 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C9H6O6·2C3H7NO·H2O | V = 1820.7 (3) Å3 |
Mr = 374.35 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 13.8441 (15) Å | µ = 0.11 mm−1 |
b = 19.745 (2) Å | T = 150 K |
c = 6.6606 (7) Å | 0.57 × 0.16 × 0.12 mm |
Bruker SMART 1000 CCD diffractometer | 2593 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | 2297 reflections with I > 2σ(I) |
Tmin = 0.929, Tmax = 0.990 | Rint = 0.022 |
16155 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.138 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.66 e Å−3 |
2593 reflections | Δρmin = −0.22 e Å−3 |
254 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.70722 (16) | 0.22164 (11) | 0.4858 (4) | 0.0215 (5) | |
C2 | 0.76594 (14) | 0.16416 (10) | 0.5032 (4) | 0.0174 (4) | |
C3 | 0.72210 (16) | 0.09996 (11) | 0.5152 (4) | 0.0204 (4) | |
C4 | 0.62119 (17) | 0.09517 (12) | 0.5166 (4) | 0.0246 (5) | |
H4A | 0.5917 | 0.0519 | 0.5265 | 0.030* | |
C5 | 0.56364 (16) | 0.15232 (12) | 0.5038 (4) | 0.0262 (5) | |
H5A | 0.4953 | 0.1483 | 0.5077 | 0.031* | |
C6 | 0.60639 (16) | 0.21563 (12) | 0.4852 (4) | 0.0243 (5) | |
H6 | 0.5672 | 0.2549 | 0.4721 | 0.029* | |
C7 | 0.75213 (17) | 0.29089 (11) | 0.4701 (4) | 0.0237 (5) | |
O1 | 0.69869 (14) | 0.33449 (9) | 0.3663 (4) | 0.0355 (5) | |
H1 | 0.728 (3) | 0.378 (2) | 0.359 (7) | 0.053* | |
O2 | 0.82946 (13) | 0.30466 (9) | 0.5413 (3) | 0.0334 (5) | |
C8 | 0.87487 (15) | 0.17298 (10) | 0.4967 (4) | 0.0197 (4) | |
O3 | 0.91671 (12) | 0.18029 (9) | 0.3363 (3) | 0.0246 (4) | |
O4 | 0.92184 (12) | 0.17362 (9) | 0.6663 (3) | 0.0238 (4) | |
H4 | 0.888 (3) | 0.1673 (17) | 0.774 (6) | 0.036* | |
C9 | 0.77795 (18) | 0.03485 (11) | 0.5189 (4) | 0.0239 (5) | |
O5 | 0.87118 (12) | 0.04261 (8) | 0.5093 (4) | 0.0347 (5) | |
H5 | 0.900 (3) | −0.003 (2) | 0.505 (7) | 0.052* | |
O6 | 0.73742 (15) | −0.01970 (8) | 0.5300 (4) | 0.0363 (5) | |
C10 | 0.93429 (19) | −0.11833 (12) | 0.5068 (4) | 0.0286 (5) | |
H10 | 0.8658 | −0.1204 | 0.5147 | 0.034* | |
O7 | 0.97352 (14) | −0.06117 (9) | 0.5093 (4) | 0.0354 (5) | |
N1 | 0.98230 (15) | −0.17588 (10) | 0.4940 (3) | 0.0258 (4) | |
C11 | 1.08763 (19) | −0.17693 (13) | 0.4816 (5) | 0.0341 (6) | |
H11A | 1.1118 | −0.1305 | 0.4680 | 0.051* | |
H11B | 1.1075 | −0.2036 | 0.3646 | 0.051* | |
H11C | 1.1142 | −0.1974 | 0.6038 | 0.051* | |
C12 | 0.9320 (2) | −0.24081 (12) | 0.4907 (5) | 0.0319 (5) | |
H12A | 0.8621 | −0.2330 | 0.4894 | 0.048* | |
H12B | 0.9495 | −0.2670 | 0.6104 | 0.048* | |
H12C | 0.9507 | −0.2661 | 0.3701 | 0.048* | |
C13 | 0.83670 (19) | 0.47076 (13) | 0.4570 (5) | 0.0332 (6) | |
H13 | 0.8410 | 0.4455 | 0.5780 | 0.040* | |
O8 | 0.78043 (15) | 0.44991 (10) | 0.3228 (4) | 0.0391 (5) | |
N2 | 0.89063 (18) | 0.52613 (12) | 0.4398 (4) | 0.0348 (6) | |
C14 | 0.8855 (3) | 0.56746 (18) | 0.2587 (7) | 0.0565 (10) | |
H14A | 0.8639 | 0.5394 | 0.1458 | 0.085* | |
H14B | 0.9495 | 0.5862 | 0.2290 | 0.085* | |
H14C | 0.8396 | 0.6046 | 0.2795 | 0.085* | |
C15 | 0.9484 (2) | 0.55029 (17) | 0.6057 (6) | 0.0428 (8) | |
H15A | 0.9494 | 0.5160 | 0.7121 | 0.064* | |
H15B | 0.9204 | 0.5923 | 0.6580 | 0.064* | |
H15C | 1.0145 | 0.5589 | 0.5595 | 0.064* | |
O9 | 0.82103 (14) | 0.15198 (10) | −0.0129 (3) | 0.0300 (4) | |
H9B | 0.848 (3) | 0.160 (2) | 0.088 (7) | 0.045* | |
H9A | 0.808 (3) | 0.110 (2) | 0.019 (6) | 0.045* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0205 (9) | 0.0206 (10) | 0.0233 (11) | −0.0003 (8) | 0.0000 (10) | −0.0011 (10) |
C2 | 0.0173 (9) | 0.0178 (9) | 0.0171 (10) | −0.0021 (7) | −0.0007 (9) | −0.0009 (9) |
C3 | 0.0221 (9) | 0.0173 (9) | 0.0219 (11) | −0.0023 (8) | 0.0008 (10) | −0.0001 (9) |
C4 | 0.0231 (10) | 0.0252 (10) | 0.0255 (12) | −0.0082 (8) | 0.0008 (10) | −0.0015 (11) |
C5 | 0.0177 (9) | 0.0326 (11) | 0.0284 (12) | −0.0032 (9) | 0.0036 (11) | −0.0007 (12) |
C6 | 0.0190 (9) | 0.0269 (11) | 0.0270 (12) | 0.0032 (8) | −0.0001 (10) | −0.0022 (11) |
C7 | 0.0235 (10) | 0.0191 (10) | 0.0285 (12) | 0.0008 (8) | −0.0006 (10) | −0.0020 (10) |
O1 | 0.0325 (10) | 0.0200 (8) | 0.0539 (13) | −0.0006 (8) | −0.0123 (10) | 0.0061 (9) |
O2 | 0.0266 (8) | 0.0230 (8) | 0.0506 (13) | −0.0042 (7) | −0.0115 (9) | 0.0017 (9) |
C8 | 0.0176 (9) | 0.0142 (8) | 0.0273 (11) | −0.0010 (7) | −0.0003 (10) | 0.0008 (10) |
O3 | 0.0217 (8) | 0.0268 (9) | 0.0252 (9) | −0.0029 (7) | 0.0041 (7) | 0.0005 (7) |
O4 | 0.0198 (8) | 0.0255 (8) | 0.0261 (9) | −0.0038 (7) | −0.0035 (7) | 0.0031 (7) |
C9 | 0.0275 (10) | 0.0185 (9) | 0.0257 (12) | −0.0014 (8) | −0.0006 (10) | −0.0012 (10) |
O5 | 0.0250 (8) | 0.0171 (7) | 0.0621 (14) | 0.0021 (6) | −0.0013 (10) | −0.0003 (10) |
O6 | 0.0391 (10) | 0.0180 (8) | 0.0518 (13) | −0.0065 (7) | 0.0025 (10) | 0.0013 (9) |
C10 | 0.0308 (11) | 0.0254 (10) | 0.0296 (13) | 0.0082 (9) | −0.0038 (13) | −0.0003 (11) |
O7 | 0.0358 (9) | 0.0224 (8) | 0.0479 (12) | 0.0067 (7) | −0.0021 (11) | −0.0037 (9) |
N1 | 0.0322 (10) | 0.0225 (9) | 0.0228 (10) | 0.0062 (8) | 0.0014 (10) | −0.0008 (10) |
C11 | 0.0326 (12) | 0.0300 (12) | 0.0397 (15) | 0.0094 (10) | −0.0015 (13) | −0.0015 (13) |
C12 | 0.0385 (13) | 0.0230 (11) | 0.0343 (14) | 0.0031 (10) | 0.0018 (15) | 0.0006 (11) |
C13 | 0.0294 (12) | 0.0230 (11) | 0.0472 (17) | 0.0008 (9) | −0.0022 (12) | 0.0039 (12) |
O8 | 0.0406 (10) | 0.0257 (9) | 0.0508 (13) | −0.0079 (8) | −0.0102 (10) | 0.0046 (10) |
N2 | 0.0299 (11) | 0.0256 (10) | 0.0490 (16) | −0.0032 (9) | −0.0023 (11) | −0.0007 (11) |
C14 | 0.064 (2) | 0.0409 (17) | 0.064 (2) | −0.0229 (17) | −0.005 (2) | 0.0161 (18) |
C15 | 0.0322 (14) | 0.0375 (14) | 0.059 (2) | 0.0001 (12) | −0.0034 (14) | −0.0132 (15) |
O9 | 0.0340 (9) | 0.0241 (8) | 0.0320 (10) | −0.0073 (7) | −0.0023 (10) | 0.0013 (9) |
C1—C2 | 1.401 (3) | C10—H10 | 0.9500 |
C1—C6 | 1.401 (3) | N1—C12 | 1.459 (3) |
C1—C7 | 1.506 (3) | N1—C11 | 1.461 (3) |
C2—C3 | 1.408 (3) | C11—H11A | 0.9800 |
C2—C8 | 1.519 (3) | C11—H11B | 0.9800 |
C3—C4 | 1.400 (3) | C11—H11C | 0.9800 |
C3—C9 | 1.500 (3) | C12—H12A | 0.9800 |
C4—C5 | 1.384 (3) | C12—H12B | 0.9800 |
C4—H4A | 0.9500 | C12—H12C | 0.9800 |
C5—C6 | 1.389 (3) | C13—O8 | 1.255 (4) |
C5—H5A | 0.9500 | C13—N2 | 1.329 (3) |
C6—H6 | 0.9500 | C13—H13 | 0.9500 |
C7—O2 | 1.202 (3) | N2—C15 | 1.445 (4) |
C7—O1 | 1.329 (3) | N2—C14 | 1.458 (5) |
O1—H1 | 0.95 (4) | C14—H14A | 0.9800 |
C8—O3 | 1.224 (3) | C14—H14B | 0.9800 |
C8—O4 | 1.303 (3) | C14—H14C | 0.9800 |
O4—H4 | 0.86 (4) | C15—H15A | 0.9800 |
C9—O6 | 1.217 (3) | C15—H15B | 0.9800 |
C9—O5 | 1.301 (3) | C15—H15C | 0.9800 |
O5—H5 | 0.99 (4) | O9—H9B | 0.78 (4) |
C10—O7 | 1.253 (3) | O9—H9A | 0.87 (4) |
C10—N1 | 1.319 (3) | ||
C2—C1—C6 | 120.7 (2) | C10—N1—C12 | 121.1 (2) |
C2—C1—C7 | 120.12 (19) | C10—N1—C11 | 121.3 (2) |
C6—C1—C7 | 119.2 (2) | C12—N1—C11 | 117.6 (2) |
C1—C2—C3 | 118.96 (18) | N1—C11—H11A | 109.5 |
C1—C2—C8 | 118.75 (18) | N1—C11—H11B | 109.5 |
C3—C2—C8 | 122.20 (18) | H11A—C11—H11B | 109.5 |
C4—C3—C2 | 119.4 (2) | N1—C11—H11C | 109.5 |
C4—C3—C9 | 117.1 (2) | H11A—C11—H11C | 109.5 |
C2—C3—C9 | 123.39 (19) | H11B—C11—H11C | 109.5 |
C5—C4—C3 | 121.3 (2) | N1—C12—H12A | 109.5 |
C5—C4—H4A | 119.4 | N1—C12—H12B | 109.5 |
C3—C4—H4A | 119.4 | H12A—C12—H12B | 109.5 |
C4—C5—C6 | 119.6 (2) | N1—C12—H12C | 109.5 |
C4—C5—H5A | 120.2 | H12A—C12—H12C | 109.5 |
C6—C5—H5A | 120.2 | H12B—C12—H12C | 109.5 |
C5—C6—C1 | 120.0 (2) | O8—C13—N2 | 123.9 (3) |
C5—C6—H6 | 120.0 | O8—C13—H13 | 118.1 |
C1—C6—H6 | 120.0 | N2—C13—H13 | 118.1 |
O2—C7—O1 | 123.7 (2) | C13—N2—C15 | 121.1 (3) |
O2—C7—C1 | 123.1 (2) | C13—N2—C14 | 120.3 (3) |
O1—C7—C1 | 113.2 (2) | C15—N2—C14 | 118.4 (3) |
C7—O1—H1 | 112 (3) | N2—C14—H14A | 109.5 |
O3—C8—O4 | 121.29 (18) | N2—C14—H14B | 109.5 |
O3—C8—C2 | 120.6 (2) | H14A—C14—H14B | 109.5 |
O4—C8—C2 | 118.1 (2) | N2—C14—H14C | 109.5 |
C8—O4—H4 | 116 (2) | H14A—C14—H14C | 109.5 |
O6—C9—O5 | 124.4 (2) | H14B—C14—H14C | 109.5 |
O6—C9—C3 | 121.5 (2) | N2—C15—H15A | 109.5 |
O5—C9—C3 | 114.2 (2) | N2—C15—H15B | 109.5 |
C9—O5—H5 | 107 (2) | H15A—C15—H15B | 109.5 |
O7—C10—N1 | 123.9 (2) | N2—C15—H15C | 109.5 |
N1—C10—O6 | 155.89 (18) | H15A—C15—H15C | 109.5 |
O7—C10—H10 | 118.0 | H15B—C15—H15C | 109.5 |
N1—C10—H10 | 118.0 | H9B—O9—H9A | 94 (4) |
C6—C1—C2—C3 | 1.6 (4) | C6—C1—C7—O2 | 151.2 (3) |
C7—C1—C2—C3 | −179.3 (2) | C2—C1—C7—O1 | 150.7 (3) |
C6—C1—C2—C8 | 178.1 (3) | C6—C1—C7—O1 | −30.1 (4) |
C7—C1—C2—C8 | −2.7 (4) | C1—C2—C8—O3 | −79.5 (3) |
C1—C2—C3—C4 | −2.2 (4) | C3—C2—C8—O3 | 97.0 (3) |
C8—C2—C3—C4 | −178.7 (3) | C1—C2—C8—O4 | 99.4 (3) |
C1—C2—C3—C9 | 175.3 (2) | C3—C2—C8—O4 | −84.1 (3) |
C8—C2—C3—C9 | −1.1 (4) | C4—C3—C9—O6 | −2.6 (4) |
C2—C3—C4—C5 | 0.8 (4) | C2—C3—C9—O6 | 179.8 (3) |
C9—C3—C4—C5 | −176.9 (2) | C4—C3—C9—O5 | 177.4 (3) |
C3—C4—C5—C6 | 1.3 (4) | C2—C3—C9—O5 | −0.2 (4) |
C4—C5—C6—C1 | −2.0 (4) | O7—C10—N1—C12 | −179.6 (3) |
C2—C1—C6—C5 | 0.5 (4) | O7—C10—N1—C11 | 0.1 (5) |
C7—C1—C6—C5 | −178.6 (2) | O8—C13—N2—C15 | 175.2 (3) |
C2—C1—C7—O2 | −28.0 (4) | O8—C13—N2—C14 | 1.1 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O8 | 0.95 (4) | 1.62 (4) | 2.561 (3) | 175 (4) |
O9—H9B···O3 | 0.78 (4) | 1.95 (4) | 2.734 (3) | 178 (4) |
O4—H4···O9i | 0.86 (4) | 1.72 (4) | 2.588 (3) | 178 (3) |
O5—H5···O7 | 0.99 (4) | 1.53 (4) | 2.491 (2) | 162 (4) |
O9—H9A···O6ii | 0.87 (4) | 1.90 (4) | 2.749 (2) | 167 (4) |
C10—H10···O6 | 0.95 | 2.67 | 3.353 (3) | 129 |
C13—H13···O2 | 0.95 | 2.80 | 3.329 (3) | 116 |
Symmetry codes: (i) x, y, z+1; (ii) −x+3/2, −y, z−1/2. |
Experimental details
(I) | (II) | (III) | |
Crystal data | |||
Chemical formula | C8H6O4·2C3H7NO | C10H6O8·4C3H7NO | C9H6O6·2C3H7NO·H2O |
Mr | 312.32 | 546.53 | 374.35 |
Crystal system, space group | Monoclinic, C2/c | Monoclinic, P21/n | Orthorhombic, P212121 |
Temperature (K) | 150 | 150 | 150 |
a, b, c (Å) | 19.663 (4), 7.5404 (13), 21.929 (4) | 12.8905 (10), 7.9398 (6), 13.8078 (10) | 13.8441 (15), 19.745 (2), 6.6606 (7) |
α, β, γ (°) | 90, 104.661 (3), 90 | 90, 108.162 (2), 90 | 90, 90, 90 |
V (Å3) | 3145.5 (10) | 1342.79 (17) | 1820.7 (3) |
Z | 8 | 2 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.11 | 0.11 |
Crystal size (mm) | 0.34 × 0.28 × 0.18 | 0.69 × 0.39 × 0.08 | 0.57 × 0.16 × 0.12 |
Data collection | |||
Diffractometer | Bruker SMART 1000 CCD diffractometer | Bruker SMART 1000 CCD diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | – | Multi-scan (SADABS; Sheldrick, 2001) | Multi-scan (SADABS; Sheldrick, 2001) |
Tmin, Tmax | – | 0.936, 0.991 | 0.929, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12434, 3577, 2318 | 11290, 3213, 2522 | 16155, 2593, 2297 |
Rint | 0.044 | 0.017 | 0.022 |
(sin θ/λ)max (Å−1) | 0.649 | 0.680 | 0.682 |
Refinement | |||
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.144, 1.05 | 0.035, 0.100, 1.04 | 0.049, 0.138, 1.11 |
No. of reflections | 3577 | 3213 | 2593 |
No. of parameters | 222 | 182 | 254 |
No. of restraints | 5 | 0 | 0 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.27, −0.18 | 0.31, −0.18 | 0.66, −0.22 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SAINT, SHELXTL (Sheldrick, 2000), SHELXTL and local programs.
C1—C6 | 1.388 (3) | C4—C8 | 1.493 (3) |
C1—C2 | 1.394 (2) | C5—C6 | 1.383 (3) |
C1—C7 | 1.494 (3) | C7—O1 | 1.227 (2) |
C2—C3 | 1.384 (3) | C7—O2 | 1.296 (2) |
C3—C4 | 1.387 (3) | C8—O3 | 1.216 (2) |
C4—C5 | 1.394 (2) | C8—O4 | 1.313 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O5 | 0.93 (3) | 1.64 (3) | 2.563 (2) | 175 (3) |
O4—H4···O6 | 0.93 (3) | 1.63 (3) | 2.554 (2) | 175 (2) |
O1—H1X···O5X | 0.93 (3) | 1.58 (8) | 2.442 (8) | 152 (14) |
C9—H9X···O2 | 0.95 | 2.78 | 3.365 (3) | 121 |
C9—H9···O1 | 0.95 | 2.70 | 3.339 (3) | 125 |
C12—H12···O3 | 0.95 | 2.64 | 3.314 (3) | 128 |
C1—C2 | 1.3909 (16) | C4—O1 | 1.2025 (15) |
C1—C3i | 1.3988 (16) | C4—O2 | 1.3130 (15) |
C1—C4 | 1.5015 (16) | C5—O3 | 1.2097 (15) |
C2—C3 | 1.3906 (17) | C5—O4 | 1.3087 (15) |
C3—C5 | 1.5045 (16) |
Symmetry code: (i) −x, −y+2, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4···O5 | 0.935 (18) | 1.643 (19) | 2.5723 (12) | 172.4 (17) |
O2—H2···O6 | 0.91 (2) | 1.65 (2) | 2.5508 (13) | 169.3 (18) |
C6—H6···O3 | 0.95 | 2.47 | 3.1761 (16) | 131.5 |
C1—C2 | 1.401 (3) | C5—C6 | 1.389 (3) |
C1—C6 | 1.401 (3) | C7—O2 | 1.202 (3) |
C1—C7 | 1.506 (3) | C7—O1 | 1.329 (3) |
C2—C3 | 1.408 (3) | C8—O3 | 1.224 (3) |
C2—C8 | 1.519 (3) | C8—O4 | 1.303 (3) |
C3—C4 | 1.400 (3) | C9—O6 | 1.217 (3) |
C3—C9 | 1.500 (3) | C9—O5 | 1.301 (3) |
C4—C5 | 1.384 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O8 | 0.95 (4) | 1.62 (4) | 2.561 (3) | 175 (4) |
O9—H9B···O3 | 0.78 (4) | 1.95 (4) | 2.734 (3) | 178 (4) |
O4—H4···O9i | 0.86 (4) | 1.72 (4) | 2.588 (3) | 178 (3) |
O5—H5···O7 | 0.99 (4) | 1.53 (4) | 2.491 (2) | 162 (4) |
O9—H9A···O6ii | 0.87 (4) | 1.90 (4) | 2.749 (2) | 167 (4) |
C10—H10···O6 | 0.95 | 2.67 | 3.353 (3) | 129 |
C13—H13···O2 | 0.95 | 2.80 | 3.329 (3) | 116 |
Symmetry codes: (i) x, y, z+1; (ii) −x+3/2, −y, z−1/2. |
Acknowledgements
The authors acknowledge the EPSRC for the provision of a studentship (SHD). Microanalyses were carried out by the Chemistry Departmental Service at Loughborough University.
References
Allen, F. H. (2002). Acta Cryst. B58, 380–388. Web of Science CrossRef CAS IUCr Journals Google Scholar
Bailey, M. & Brown, C. J. (1967). Acta Cryst. 22, 387–391. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2001). SMART (Version 5.611) and SAINT (Version 6.02a). Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Chatterjee, S., Pedireddi, V. R., Ranganathan, A. & Rao, C. N. R. (2000). J. Mol. Struct. 520, 107–115. Web of Science CSD CrossRef CAS Google Scholar
Csoregh, I., Sjogren, A., Czugler, M., Cserzo, M. & Weber, E. (1986). J. Chem. Soc. Perkin Trans. 2, pp. 507–513. Google Scholar
Dale, S. H. & Elsegood, M. R. J. (2003a). Acta Cryst. C59, o165–o166. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Dale, S. H. & Elsegood, M. R. J. (2003b). Acta Cryst. E59, o127–o128. Web of Science CrossRef IUCr Journals Google Scholar
Dale, S. H. & Elsegood, M. R. J. (2003c). Acta Cryst. E59, o1087–o1088. Web of Science CSD CrossRef IUCr Journals Google Scholar
Desiraju, G. R. & Steiner, T. (1999). The Weak Hydrogen Bond in Structural Chemistry and Biology, pp. 44–68. New York: Oxford University Press Inc. Google Scholar
Etter, M. C. (1990). Acc. Chem. Res. 23, 120–126. CrossRef CAS Web of Science Google Scholar
Etter, M. C. & MacDonald, J. C. (1990). Acta Cryst. B46, 256–262. CrossRef CAS Web of Science IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Fornies-Marquina, J. M., Courseille, C., Busetta, B. & Hospital, M. (1972). Cryst. Struct. Commun. 1, 47–50. CAS Google Scholar
Herbstein, F. H. & Kapon, M. (1978). Acta Cryst. B34, 1608–1612. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Herbstein, F. H., Kapon, M. & Wasserman, S. (1978). Acta Cryst. B34, 1613–1617. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Leiserowitz, L. (1976). Acta Cryst. B32, 775–802. CrossRef CAS IUCr Journals Web of Science Google Scholar
Mo, F. & Adman, E. (1975). Acta Cryst. B31, 192–198. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Nangia, A. & Desiraju, G. R. (1999). Chem. Commun. pp. 605–606. Web of Science CrossRef Google Scholar
Sheldrick, G. M. (2000). SHELXTL. Version 6.10. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Sheldrick, G. M. (2001). SADABS. Version 2.03. University of Göttingen, Germany. Google Scholar
Takusagawa, F. & Shimada, A. (1973). Bull. Chem. Soc. Jpn, 46, 2998–3004. CrossRef CAS Web of Science Google Scholar
Vishweshwar, P., Nangia, A. & Lynch, V. M. (2002). J. Org. Chem. 67, 556–565. Web of Science CSD CrossRef PubMed CAS Google Scholar
© International Union of Crystallography. Prior permission is not required to reproduce short quotations, tables and figures from this article, provided the original authors and source are cited. For more information, click here.
A wide variety of solvents are available to the chemist for the dissolution and recrystallization of compounds. In the case of benzenepolycarboxylic acids, those solvents of most interest in the synthesis of solvent-inclusion clathrates must be capable of hydrogen bonding, containing donor and/or acceptor atoms. A recent study (Nangia & Desiraju, 1999), with corrections applied for the different usages of solvents in recrystallization, has found that the greater the number of donor and acceptor sites on the solvent molecule, the more likely the solvent is to be included in organic crystals. Solvents such as N,N-dimethylformamide (DMF), dimethylsulfoxide and dioxane, while having low usage as recrystallization solvents, have an extremely high probability of inclusion through their ability to bond to the solute molecule via `multi-point recognition' using both strong and weak hydrogen bonds.
Numerous examples of benzenepolycarboxylic acid solvent-inclusion compounds exist in the literature (for example, Dale & Elsegood, 2003a; Chatterjee et al., 2000; Herbstein & Kapon, 1978; Herbstein et al., 1978), and yet only one literature example of a single-crystal X-ray structure shows the solvation of a benzenepolycarboxylic acid by DMF, that of benzene-1,3,5-tricarboxylic acid (trimesic acid) bis(N,N-dimethylformamide) solvate (H3TMA·2DMF) (Dale & Elsegood, 2003a). In the presence of DMF, the formation of the common R22(8) head-to-tail carboxylic acid-acid graph-set motif (Leiserowitz, 1976; Etter, 1990; Etter & MacDonald, 1990; Bernstein et al., 1995) is prevented in this structure. Instead, two of the three carboxylic acid groups interact directly with DMF molecules in an R22(7) graph-set pattern with a combination of strong O—H···O and weaker C—H···O hydrogen bonds (Desiraju & Steiner, 1999), while the third carboxyl group interacts with one of these carboxyl–DMF synthons.
We investigate here the hydrogen-bonding arrays created by the cocrystallization of DMF with benzene-1,4-dicarboxylic acid (terephthalic acid, H2TA), benzene-1,2,4,5-tetracarboxylic acid (pyromellitic acid, H4PMA) and benzene-1,2,3-tricarboxylic acid (hemimellitic acid, H3HMA). H2TA dissolves easily in DMF, one of very few examples of organic solvents capable of dissolving this acid. X-ray analysis of colourless crystals grown from the DMF solution at approximately 258 K showed that H2TA cocrystallizes with two molecules of DMF, producing H2TA·2DMF (C14H20N2O6), (I). Because of the instability of this compound under ambient conditions, the collation of supporting evidence, such as microanalysis and IR spectra, has proven impossible. The H2TA molecule in (I) does not possess an inversion centre because of rotational disorder [82.8 (4):17.2 (4) %] in the carboxyl group attached to atom C1 and complementary rotational disorder in the aldehyde group of the DMF molecule hydrogen bonded to this carboxyl group. The asymmetric unit therefore comprises one complete formula unit (Fig. 1). The geometry of the H2TA molecule (Table 1) shows good agreement with that previously found (Bailey & Brown, 1967). The H2TA molecule is roughly planar, with the carboxyl groups only deviating slightly from coplanarity with the aromatic ring [the dihedral angles with respect to the C1–C6 ring are 0.7 (3)° for C7/O1/O2 and 2.2 (3)° for C8/O3/O4].
Both unique DMF molecules hydrogen bond to their respective carboxyl groups utilizing the same R22(7) synthon observed in H3TMA·2DMF (Dale & Elsegood, 2003a), with one strong O—H···O hydrogen bond and one complementary, weaker C—H···O hydrogen bond (Table 2). Larger dihedral angles occur between the carboxyl groups and the aldehyde groups of their associated DMF molecules within the R22(7) motifs [the dihedral angle between C7/O1/O2 and C9/O5/H9 is 16.4 (3)°, and that between C8/O3/O4 and C12/O6/H12 is 17.3 (3)°]. No further strong hydrogen bonding exists outside the asymmetric unit.
H4PMA cocrystallizes with four molecules of DMF, yielding H4PMA·4DMF (C22H34N4O12), (II), which forms readily at room temperature and shows reasonable stability under ambient conditions, in contrast to (I). The H4PMA molecule lies on a crystallographic centre of symmetry, resulting in the asymmetric unit comprising half of a formula unit (Fig. 2). The geometry of the H4PMA molecule (Table 3) concurs with that previously determined (Dale & Elsegood, 2003b).
As expected, steric repulsions force the rotation of adjacent carboxyl groups away from the plane of the aromatic ring [the dihedral angles with respect to the C1/C3i ring are 53.75 (12)° for C4/O1/O2 and 38.85 (13)° for C5/O3/O4; symmetry code: (i) −x, 2 − y, −z].
The two independent DMF molecules in (II) have differing binding modes to the carboxyl groups; while one adopts the O—H···O/C—H···O R22(7) arrangement seen in both (I) and H3TMA·2DMF (Dale & Elsegood, 2003a), the second interacts via a simple linear O—H···O hydrogen bond utilizing the OH group of the second unique carboxyl group (Table 4). The R22(7) motif in this structure contains a shorter, and therefore stronger, C—H···O interaction than the same motif in (I). As with (I), no further strong hydrogen-bonding interactions occur outside the asymmetric unit of (II). The cocrystallization of commercially available H3HMA·2H2O with DMF yields colourless crystals of H3HMA·2DMF·H2O (C15H22N2O9), (III) (Fig. 3). Compound (III) was observed to desolvate over a period of a few minutes under ambient conditions, sufficient time to allow IR and microanalyses to be carried out. The asymmetric unit of (III) contains a whole formula unit, in which the outer carboxyl groups of the H3HMA molecule, at atoms C1 and C3, both hydrogen bond, via the R22(7) synthon, to different DMF molecules, creating H3HMA·2DMF units (Table 6). These secondary building blocks are linked into a one-dimensional ladder structure (Fig. 4) by hydrogen bonding involving the molecule of water included in the asymmetric unit.
The inner carboxyl group at C2 lies almost perpendicular to the plane of the aromatic ring [the dihedral angle between the C1/C6 ring and C8/O3/O4 plane is 81.54 (10)°] as observed in the dihydrate of H3HMA (Fornies-Marquina et al., 1972; Takusagawa & Shimada, 1973; Mo & Adman, 1975) and in its 2- methyl ester (Dale & Elsegood, 2003c). This carboxyl group, aided by its anti- planar conformation (Leiserowitz, 1976), forms a zigzag C22(6) chain through hydrogen bonding with one OH group of the water molecule. A search of the Cambridge Structural Database (CSD; Version 5.25 of November 2003 plus one update; Allen, 2002) identifies 30 hits containing both carboxylic acid groups and DMF molecules, of which six are redeterminations. A more detailed search of hydrogen-bonding motifs in carboxylic acid/DMF structures [constrainung the O···O contact distance to within the range 2– 3.2 Å and the C···O contact distance to within the range 2.5–3.5 Å; redeterminations omitted from statistical analysis] indicates that 19 structures contain O—H···O hydrogen bonding between the CO2H group and the aldehyde O atom, the mean O···O contact distance being 2.597 (15) Å [range 2.507–2.888 Å]. 13 of these 19 structures also contain C—H···O hydrogen bonding, producing the R22(7) motif observed in (I), (II) and (III). The mean O···O contact distance within this population [containing the R22(7) motif] is 2.585 (13) Å [range 2.507–2.692 Å], while the mean O—Ĥ···O angle is 169.4 (17)°, indicating a slight shortening in the O—H···O hydrogen-bond distance when C—H···O interactions exist and showing good agreement with the hydrogen-bond geometry observed for the same motifs in (I), (II) and (III). C—H···O interactions within this population have a mean C···O contact distance of 3.24 (3) Å [range 3.054–3.490 Å]. It is interesting to note the structure of 1,1'-binaphthyl-2,2'-dicarboxylic acid bis(DMF) clathrate (CSD refcode CIWJIB10; Csoregh et al., 1986), in which two DMF binding modes are present, viz. one R22(7) motif and one simple linear O—H···O motif, just as observed in the structure of (II). The O···O contact distances within these motifs are 2.692 and 2.888 Å, respectively, considerably longer than those observed in (II) [2.5723 (12) and 2.5508 (13) Å, respectively], presumably becasue of the increased steric bulk of the solute molecule. While the CO2H/DMF R22(7) synthon has relatively few examples in the CSD compared with the analogous, well studied, carboxylic acid–pyridine R22(7) synthon (Vishweshwar et al., 2002), the majority (15) of the 21 CSD-held structures containing the CO2H/formyl group R22(7) synthon [search constraints as above; mean O···O = 2.599 (10) Å, mean C···O = 3.28 (2) Å] do involve DMF, indicating the more general carboxylic acid/formyl group as a supramolecular synthon worthy of future study.
The three examples of DMF clathrates presented here show that the presence of DMF as the cocrystallization solvent can limit the dimensionality of the resulting solid-state structure, compared with that of the parent benzenepolycarboxylic acid and its other solvent-inclusion clathrates. This limitation? is due to the binding of the DMF molecules to the often extensively hydrogen-bonded carboxyl groups via the R22(7) synthon. While the inclusion of water molecules in (III) helps produce a more extended structure, the dimensionality of the cocrystal will, of course, also depend on the nature of the solute molecule. Comparisons with the two-dimensional structure of H3TMA·2DMF imply that both the number and relative positions of the carboxyl groups in the benzenepolycarboxylic acid molecules can lead to a range of hydrogen-bonded supramolecular structures with varying dimensionalities.