organic compounds
Ethyl 2-amino-4-tert-butyl-1,3-thiazole-5-carboxylate and 6-methylimidazo[2,1-b]thiazole–2-amino-1,3-thiazole (1/1)
aSchool of Science and the Environment, Coventry University, Coventry CV1 5FB, England, and bKey Organics Ltd, Highfield Industrial Estate, Camelford, Cornwall PL32 9QZ, England
*Correspondence e-mail: apx106@coventry.ac.uk
The structure of ethyl 2-amino-4-tert-butyl-1,3-thiazole-5-carboxylate, C10H16N2O2S, (I), and the structure of the 1:1 adduct 6-methylimidazo[2,1-b]thiazole–2-amino-1,3-thiazole (1/1), C6H6N2S·C3H4N2S, (II), have been determined. The molecules in (I) associate via a hydrogen-bonded R(8) dimer consisting of N—H⋯N interactions, with the hydrogen-bonding array additionally involving N—H⋯O interactions to one of the carboxylate O atoms. The 2-aminothiazole molecules in (II) also associate via an N—H⋯N hydrogen-bonded R(8) dimer, with an additional N—H⋯N interaction to the Nsp2 atom of the imidazothiazole moiety, creating hydrogen-bonded quartets.
Comment
Aminothiazoles have been extensively studied for a range of biological and industrial applications (Lynch et al., 1999; Toplak et al., 2003). 2-Amino-1,3-thiazole, the structure of which was reported in 1982 (Caranoni & Reboul, 1982), is itself listed as a thyroid inhibitor (Merck, 2001). A search of the Cambridge Structural Database (CSD, Version 5.25 of April 2004; Allen, 2002) reveals that there are 73 crystal structures containing the 2-aminothiazole moiety, with 51 of those being pure organics. The present authors have recently published a paper on the packing modes of 2-amino-4-phenyl-1,3-thiazole derivatives (Lynch et al., 2002) and have been investigating the structural aspects of 2-aminothiazole derivatives for the last six years. One such compound reported during this time was ethyl 4-tert-butyl-2-(3-phenylureido)-1,3-thiazole-5-carboxylate (Lynch & McClenaghan, 2002), which is currently the only structure of a 4-tert-butyl-5-ester derivative of an aminothiazole. However, we have recently determined the structure of ethyl 2-amino-4-tert-butyl-1,3-thiazole-5-carboxylate, (I), and report it here.
Another aminothiazole derivative is imidazo[2,1-b]thiazole, which has 11 analogues whose structures have previously been reported in the CSD. This bicyclic ring system can be prepared by refluxing a halomethyl ketone with 2-aminothiazole in ethanol. In an attempt to do so, using chloroacetone, an incomplete reaction yielded a mixture of the imidazo[2,1-b]thiazole derivative with the starting thiazole. The crystals that formed from the impure product were subsequently found to contain the 1:1 adduct of 6-methylimidazo[2,1-b]thiazole with 2-aminothiazole, (II), the structure of which is also reported here.
The structure of (I) consists of a single molecule (Fig. 1) which associates, via hydrogen-bonding interactions, to three symmetry-equivalent molecules (Fig. 2). One symmetry-equivalent molecule forms a hydrogen-bonded R(8) graph-set dimer (Etter, 1990) with (I) through an N—H⋯N interaction (Table 1), a feature common for 2-aminothiazole derivatives, while the other two associate to and from (I) through an N—H⋯O interaction. A similar packing mode has previously been observed in the structure of ethyl 2-amino-4-phenyl-1,3-thiazole-5-carboxylate (Lynch et al., 2002), but is not observed in any other 5-ester-substituted 2-aminothiazole. This is probably due to the fact that, in each of these other structures, there are alternative exocyclic hydrogen-bonding acceptor atoms in addition to the two carboxylate O atoms. The ethyl chain twists out of the plane of the thiazole ring, with the C51—O52—C53—C54 torsion angle being 85.5 (2)°, compared with −168.5 (3)° in ethyl 4-tert-butyl-2-(3-phenylureido)-1,3-thiazole-5-carboxylate (Lynch & McClenaghan, 2002). One of the methyl groups in the tert-butyl moiety is aligned with the thiazole ring, with the N3—C4—C41—C42 torsion angle being −1.8 (2)°, similar to what was observed in ethyl 4-tert-butyl-2-(3-phenylureido)-1,3-thiazole-5-carboxylate [comparative torsion angle = 7.2 (5)°].
The structure of (II) comprises two adduct molecules associated by a single hydrogen-bonding interaction from one of the 2-amino H atoms to the Nsp2 atom in the imidazothiazole system (Fig. 3). Although one of the present authors (DEL) has determined 16 structures containing 2-aminothiazole derivatives, there are only two previously reported co-crystals containing 2-aminothiazole itself (Kuz'mina & Struchkov, 1984; Moers et al., 2000), and both of these are organic salts. The structure of (II) is unique in that it is the first adduct (not an organic salt) of 2-aminothiazole. The molecules in (II) pack across an inversion centre to construct an associated quartet, with the 2-aminothiazoles forming a hydrogen-bonded R(8) graph-set dimer (Fig. 4). Hydrogen-bonding associations are listed in Table 2. A C—H⋯N close contact is also observed between atom C2A and the 2-amino N atom. The distance between atoms N7A and S1B is 3.294 (3) Å.
The determination of the structure of (II) and examination of the packing associations may now lead to a series of adducts containing 2-aminothiazole and heterocyclic bases, as opposed to continuing to try to obtain co-crystals (either adducts or organic salts) with organic acids.
Experimental
Compound (I) was obtained from Key Organics Ltd and was crystallized from ethanol. Compound (II) was prepared by refluxing equimolar amounts of 2-amino-1,3-thiazole and chloroacetone in ethanol for 16 h. Upon removal of the reaction solvent, the product was washed with aqueous NaOH and then extracted into dichloromethane. Crystals of (II) grew from the resultant liquid after removal of the extraction solvent.
Compound (I)
Crystal data
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Data collection
Refinement
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Compound (II)
Crystal data
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Data collection
Refinement
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All H atoms were included in the 3 H atoms) and 0.99 Å (CH2 H atoms), and with Uiso(H) = 1.25Ueq(C,N).
at calculated positions in the riding-model approximation, with N—H distances of 0.88 Å, and C—H distances of 0.95 (aromatic H atoms), 0.98 (CHFor both compounds, data collection: DENZO (Otwinowski & Minor, 1997) and COLLECT (Nonius, 1998); cell DENZO and COLLECT; data reduction: DENZO, SCALEPACK (Otwinowski & Minor, 1997) and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S0108270104015471/sk1738sup1.cif
contains datablocks I, II, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270104015471/sk1738Isup2.hkl
Structure factors: contains datablock II. DOI: 10.1107/S0108270104015471/sk1738IIsup3.hkl
Compound (I) was obtained from Key Organics Ltd. and was crystallized from ethanol. Compound (II) was prepared by refluxing equimolar amounts of 2-amino-1,3-thiazole and chloroacetone in ethanol for 16 h. Upon removal of the reaction solvent, the product was washed with aqueous NaOH and then extracted into dichloromethane. Crystals of (II) grew from the resultant liquid after removal of the extraction solvent.
All H atoms were included in the
at calculated positions, in the riding-model approximation, with N—H distances of 0.88 Å, and C—H distances of 0.95 (aromatic H atoms), 0.98 (CH3 H atoms) and 0.99 Å (CH2 H atoms), and with Uiso(H) = 1.25Ueq(C,N).Data collection: DENZO (Otwinowski & Minor, 1997) and COLLECT (Nonius, 1998) for (I); DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998) for (II). For both compounds, cell
DENZO and COLLECT; data reduction: DENZO, SCALEPACK (Otwinowski & Minor, 1997) and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997); software used to prepare material for publication: SHELXL97.C10H16N2O2S | F(000) = 488 |
Mr = 228.31 | Dx = 1.276 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 3289 reflections |
a = 10.6248 (8) Å | θ = 2.9–27.5° |
b = 8.6055 (5) Å | µ = 0.26 mm−1 |
c = 13.0135 (9) Å | T = 120 K |
β = 92.977 (4)° | Prism, colourless |
V = 1188.24 (14) Å3 | 0.42 × 0.32 × 0.08 mm |
Z = 4 |
Bruker-Nonius KappaCCD area-detector diffractometer | 2093 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 1668 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.082 |
Detector resolution: 9.091 pixels mm-1 | θmax = 25.0°, θmin = 3.1° |
ϕ and ω scans | h = −12→12 |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | k = −10→10 |
Tmin = 0.913, Tmax = 0.977 | l = −15→15 |
9227 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0601P)2 + 0.0328P] where P = (Fo2 + 2Fc2)/3 |
2093 reflections | (Δ/σ)max < 0.001 |
140 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
C10H16N2O2S | V = 1188.24 (14) Å3 |
Mr = 228.31 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.6248 (8) Å | µ = 0.26 mm−1 |
b = 8.6055 (5) Å | T = 120 K |
c = 13.0135 (9) Å | 0.42 × 0.32 × 0.08 mm |
β = 92.977 (4)° |
Bruker-Nonius KappaCCD area-detector diffractometer | 2093 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 1668 reflections with I > 2σ(I) |
Tmin = 0.913, Tmax = 0.977 | Rint = 0.082 |
9227 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.20 e Å−3 |
2093 reflections | Δρmin = −0.34 e Å−3 |
140 parameters |
x | y | z | Uiso*/Ueq | ||
S1 | 0.73102 (5) | 0.23587 (6) | 0.65724 (3) | 0.02690 (19) | |
C2 | 0.62597 (18) | 0.3504 (2) | 0.58627 (14) | 0.0256 (5) | |
N21 | 0.57163 (16) | 0.47329 (19) | 0.62767 (12) | 0.0318 (4) | |
H21 | 0.5186 | 0.5309 | 0.5900 | 0.040* | |
H22 | 0.5887 | 0.4969 | 0.6927 | 0.040* | |
N3 | 0.60506 (15) | 0.30740 (18) | 0.48900 (11) | 0.0242 (4) | |
C4 | 0.67079 (18) | 0.1747 (2) | 0.46746 (14) | 0.0233 (4) | |
C41 | 0.64797 (18) | 0.1044 (2) | 0.35997 (14) | 0.0260 (5) | |
C42 | 0.5490 (2) | 0.1988 (3) | 0.29758 (15) | 0.0366 (5) | |
H41 | 0.4713 | 0.2036 | 0.3348 | 0.046* | |
H42 | 0.5316 | 0.1491 | 0.2306 | 0.046* | |
H43 | 0.5807 | 0.3043 | 0.2873 | 0.046* | |
C43 | 0.7696 (2) | 0.1048 (2) | 0.30173 (15) | 0.0326 (5) | |
H44 | 0.8007 | 0.2116 | 0.2964 | 0.041* | |
H45 | 0.7526 | 0.0622 | 0.2326 | 0.041* | |
H46 | 0.8333 | 0.0411 | 0.3389 | 0.041* | |
C44 | 0.5958 (2) | −0.0610 (2) | 0.37003 (15) | 0.0306 (5) | |
H47 | 0.6590 | −0.1266 | 0.4064 | 0.038* | |
H48 | 0.5759 | −0.1039 | 0.3013 | 0.038* | |
H49 | 0.5191 | −0.0581 | 0.4088 | 0.038* | |
C5 | 0.74610 (18) | 0.1188 (2) | 0.54923 (14) | 0.0249 (4) | |
C51 | 0.83058 (18) | −0.0117 (2) | 0.56901 (14) | 0.0261 (5) | |
O51 | 0.87845 (14) | −0.03732 (17) | 0.65452 (10) | 0.0345 (4) | |
O52 | 0.85479 (13) | −0.09931 (15) | 0.48804 (9) | 0.0288 (3) | |
C53 | 0.9321 (2) | −0.2367 (2) | 0.50785 (16) | 0.0312 (5) | |
H51 | 0.9964 | −0.2144 | 0.5637 | 0.039* | |
H52 | 0.9764 | −0.2640 | 0.4452 | 0.039* | |
C54 | 0.8522 (3) | −0.3706 (2) | 0.5382 (2) | 0.0484 (6) | |
H53 | 0.8094 | −0.3440 | 0.6008 | 0.060* | |
H54 | 0.9055 | −0.4621 | 0.5512 | 0.060* | |
H55 | 0.7893 | −0.3933 | 0.4825 | 0.060* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0291 (3) | 0.0302 (3) | 0.0211 (3) | 0.0021 (2) | −0.0018 (2) | −0.0009 (2) |
C2 | 0.0268 (11) | 0.0267 (10) | 0.0232 (10) | −0.0036 (8) | −0.0002 (8) | 0.0000 (8) |
N21 | 0.0404 (11) | 0.0325 (9) | 0.0220 (8) | 0.0094 (8) | −0.0049 (7) | −0.0022 (8) |
N3 | 0.0277 (9) | 0.0246 (8) | 0.0203 (8) | −0.0001 (7) | −0.0004 (7) | −0.0006 (7) |
C4 | 0.0235 (10) | 0.0247 (10) | 0.0219 (9) | −0.0045 (8) | 0.0031 (8) | 0.0015 (8) |
C41 | 0.0264 (11) | 0.0305 (11) | 0.0213 (9) | 0.0015 (8) | 0.0012 (8) | 0.0005 (8) |
C42 | 0.0438 (14) | 0.0413 (12) | 0.0237 (10) | 0.0090 (10) | −0.0068 (9) | −0.0071 (9) |
C43 | 0.0385 (13) | 0.0374 (12) | 0.0225 (10) | 0.0001 (10) | 0.0071 (9) | 0.0011 (9) |
C44 | 0.0306 (12) | 0.0337 (11) | 0.0276 (10) | −0.0024 (9) | 0.0029 (9) | −0.0067 (9) |
C5 | 0.0272 (11) | 0.0270 (10) | 0.0208 (9) | −0.0024 (8) | 0.0030 (8) | 0.0006 (8) |
C51 | 0.0255 (11) | 0.0292 (11) | 0.0239 (10) | −0.0035 (8) | 0.0039 (8) | 0.0021 (9) |
O51 | 0.0395 (9) | 0.0393 (9) | 0.0241 (7) | 0.0101 (7) | −0.0042 (6) | 0.0016 (6) |
O52 | 0.0315 (8) | 0.0315 (8) | 0.0233 (7) | 0.0067 (6) | 0.0017 (6) | −0.0011 (6) |
C53 | 0.0293 (12) | 0.0332 (11) | 0.0315 (11) | 0.0087 (9) | 0.0046 (9) | 0.0010 (9) |
C54 | 0.0551 (16) | 0.0331 (12) | 0.0583 (15) | 0.0020 (11) | 0.0163 (13) | 0.0017 (12) |
S1—C2 | 1.7214 (19) | C43—H45 | 0.98 |
S1—C5 | 1.7434 (18) | C43—H46 | 0.98 |
C2—N3 | 1.327 (2) | C44—H47 | 0.98 |
C2—N21 | 1.332 (2) | C44—H48 | 0.98 |
N21—H21 | 0.88 | C44—H49 | 0.98 |
N21—H22 | 0.88 | C5—C51 | 1.452 (3) |
N3—C4 | 1.375 (2) | C51—O51 | 1.219 (2) |
C4—C5 | 1.384 (3) | C51—O52 | 1.332 (2) |
C4—C41 | 1.532 (2) | O52—C53 | 1.455 (2) |
C41—C42 | 1.529 (3) | C53—C54 | 1.496 (3) |
C41—C43 | 1.532 (3) | C53—H51 | 0.99 |
C41—C44 | 1.535 (3) | C53—H52 | 0.99 |
C42—H41 | 0.98 | C54—H53 | 0.98 |
C42—H42 | 0.98 | C54—H54 | 0.98 |
C42—H43 | 0.98 | C54—H55 | 0.98 |
C43—H44 | 0.98 | ||
C2—S1—C5 | 88.99 (9) | H44—C43—H46 | 109.5 |
N3—C2—N21 | 123.57 (17) | H45—C43—H46 | 109.5 |
N3—C2—S1 | 115.09 (14) | C41—C44—H47 | 109.5 |
N21—C2—S1 | 121.34 (14) | C41—C44—H48 | 109.5 |
C2—N21—H21 | 120.0 | H47—C44—H48 | 109.5 |
C2—N21—H22 | 120.0 | C41—C44—H49 | 109.5 |
H21—N21—H22 | 120.0 | H47—C44—H49 | 109.5 |
C2—N3—C4 | 111.38 (15) | H48—C44—H49 | 109.5 |
N3—C4—C5 | 114.28 (16) | C4—C5—C51 | 137.07 (18) |
N3—C4—C41 | 117.14 (15) | C4—C5—S1 | 110.22 (14) |
C5—C4—C41 | 128.52 (17) | C51—C5—S1 | 112.69 (13) |
C42—C41—C4 | 110.29 (16) | O51—C51—O52 | 122.07 (17) |
C42—C41—C43 | 108.08 (16) | O51—C51—C5 | 121.76 (18) |
C4—C41—C43 | 110.68 (16) | O52—C51—C5 | 116.15 (16) |
C42—C41—C44 | 107.26 (17) | C51—O52—C53 | 116.77 (14) |
C4—C41—C44 | 109.21 (15) | O52—C53—C54 | 110.44 (17) |
C43—C41—C44 | 111.25 (16) | O52—C53—H51 | 109.6 |
C41—C42—H41 | 109.5 | C54—C53—H51 | 109.6 |
C41—C42—H42 | 109.5 | O52—C53—H52 | 109.6 |
H41—C42—H42 | 109.5 | C54—C53—H52 | 109.6 |
C41—C42—H43 | 109.5 | H51—C53—H52 | 108.1 |
H41—C42—H43 | 109.5 | C53—C54—H53 | 109.5 |
H42—C42—H43 | 109.5 | C53—C54—H54 | 109.5 |
C41—C43—H44 | 109.5 | H53—C54—H54 | 109.5 |
C41—C43—H45 | 109.5 | C53—C54—H55 | 109.5 |
H44—C43—H45 | 109.5 | H53—C54—H55 | 109.5 |
C41—C43—H46 | 109.5 | H54—C54—H55 | 109.5 |
C5—S1—C2—N3 | −1.16 (16) | C41—C4—C5—C51 | 2.1 (4) |
C5—S1—C2—N21 | 179.29 (17) | N3—C4—C5—S1 | 1.1 (2) |
N21—C2—N3—C4 | −178.48 (18) | C41—C4—C5—S1 | −176.03 (16) |
S1—C2—N3—C4 | 2.0 (2) | C2—S1—C5—C4 | 0.00 (15) |
C2—N3—C4—C5 | −2.0 (2) | C2—S1—C5—C51 | −178.60 (15) |
C2—N3—C4—C41 | 175.51 (16) | C4—C5—C51—O51 | −174.3 (2) |
N3—C4—C41—C42 | −1.8 (2) | S1—C5—C51—O51 | 3.8 (2) |
C5—C4—C41—C42 | 175.29 (19) | C4—C5—C51—O52 | 7.1 (3) |
N3—C4—C41—C43 | 117.77 (19) | S1—C5—C51—O52 | −174.81 (13) |
C5—C4—C41—C43 | −65.2 (3) | O51—C51—O52—C53 | 5.6 (3) |
N3—C4—C41—C44 | −119.42 (18) | C5—C51—O52—C53 | −175.82 (16) |
C5—C4—C41—C44 | 57.7 (3) | C51—O52—C53—C54 | 85.5 (2) |
N3—C4—C5—C51 | 179.2 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···N3i | 0.88 | 2.14 | 3.016 (2) | 173 |
N21—H22···O51ii | 0.88 | 2.02 | 2.858 (2) | 158 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+3/2, y+1/2, −z+3/2. |
C6H6N2S·C3H4N2S | Z = 2 |
Mr = 238.33 | F(000) = 248 |
Triclinic, P1 | Dx = 1.470 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.9195 (2) Å | Cell parameters from 9410 reflections |
b = 9.1860 (2) Å | θ = 2.9–27.5° |
c = 9.6953 (3) Å | µ = 0.47 mm−1 |
α = 69.5204 (17)° | T = 120 K |
β = 71.4823 (16)° | Plate, colourless |
γ = 74.2770 (17)° | 0.26 × 0.08 × 0.04 mm |
V = 538.48 (3) Å3 |
Bruker-Nonius KappaCCD area-detector diffractometer | 2472 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 2224 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.072 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.6°, θmin = 3.2° |
ϕ and ω scans | h = −8→9 |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | k = −11→11 |
Tmin = 0.885, Tmax = 0.982 | l = −12→12 |
12593 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.105 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0468P)2 + 0.3904P] where P = (Fo2 + 2Fc2)/3 |
2472 reflections | (Δ/σ)max < 0.001 |
137 parameters | Δρmax = 0.26 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
C6H6N2S·C3H4N2S | γ = 74.2770 (17)° |
Mr = 238.33 | V = 538.48 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.9195 (2) Å | Mo Kα radiation |
b = 9.1860 (2) Å | µ = 0.47 mm−1 |
c = 9.6953 (3) Å | T = 120 K |
α = 69.5204 (17)° | 0.26 × 0.08 × 0.04 mm |
β = 71.4823 (16)° |
Bruker-Nonius KappaCCD area-detector diffractometer | 2472 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 2224 reflections with I > 2σ(I) |
Tmin = 0.885, Tmax = 0.982 | Rint = 0.072 |
12593 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.105 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.26 e Å−3 |
2472 reflections | Δρmin = −0.44 e Å−3 |
137 parameters |
x | y | z | Uiso*/Ueq | ||
S1A | 0.00960 (8) | −0.08327 (6) | 0.30204 (5) | 0.03224 (15) | |
C2A | 0.1187 (3) | −0.2132 (2) | 0.1913 (2) | 0.0286 (4) | |
H2A | 0.1030 | −0.3207 | 0.2263 | 0.036* | |
C3A | 0.2265 (3) | −0.1461 (2) | 0.0524 (2) | 0.0243 (4) | |
H3A | 0.2955 | −0.1999 | −0.0225 | 0.030* | |
N4A | 0.2258 (2) | 0.01230 (17) | 0.03015 (16) | 0.0202 (3) | |
C5A | 0.3102 (3) | 0.1371 (2) | −0.0801 (2) | 0.0233 (4) | |
H5A | 0.3949 | 0.1379 | −0.1790 | 0.029* | |
C6A | 0.2462 (3) | 0.2595 (2) | −0.0171 (2) | 0.0226 (4) | |
C61A | 0.2951 (3) | 0.4226 (2) | −0.0846 (2) | 0.0301 (4) | |
H61A | 0.3603 | 0.4435 | −0.0190 | 0.038* | |
H62A | 0.1670 | 0.4996 | −0.0937 | 0.038* | |
H63A | 0.3902 | 0.4316 | −0.1855 | 0.038* | |
N7A | 0.1235 (2) | 0.21473 (18) | 0.12958 (17) | 0.0249 (3) | |
C8A | 0.1169 (3) | 0.0656 (2) | 0.15266 (19) | 0.0226 (4) | |
S1B | 0.43793 (7) | 0.20121 (5) | 0.32915 (5) | 0.02753 (15) | |
C2B | 0.2352 (3) | 0.3412 (2) | 0.39595 (19) | 0.0214 (3) | |
N21B | 0.0592 (2) | 0.38726 (19) | 0.34887 (18) | 0.0271 (3) | |
H21B | −0.0415 | 0.4574 | 0.3837 | 0.034* | |
H22B | 0.0448 | 0.3473 | 0.2832 | 0.034* | |
N3B | 0.2716 (2) | 0.39372 (18) | 0.49329 (17) | 0.0240 (3) | |
C4B | 0.4678 (3) | 0.3223 (2) | 0.5168 (2) | 0.0256 (4) | |
H4B | 0.5206 | 0.3462 | 0.5841 | 0.032* | |
C5B | 0.5789 (3) | 0.2182 (2) | 0.4401 (2) | 0.0294 (4) | |
H5B | 0.7148 | 0.1621 | 0.4457 | 0.037* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1A | 0.0402 (3) | 0.0267 (3) | 0.0227 (2) | −0.0067 (2) | −0.0004 (2) | −0.00468 (19) |
C2A | 0.0265 (9) | 0.0212 (9) | 0.0359 (10) | −0.0024 (7) | −0.0074 (8) | −0.0073 (8) |
C3A | 0.0220 (8) | 0.0198 (8) | 0.0329 (10) | −0.0007 (7) | −0.0073 (7) | −0.0115 (7) |
N4A | 0.0189 (7) | 0.0199 (7) | 0.0216 (7) | −0.0012 (5) | −0.0053 (5) | −0.0073 (6) |
C5A | 0.0209 (8) | 0.0242 (9) | 0.0224 (8) | −0.0043 (7) | −0.0031 (6) | −0.0058 (7) |
C6A | 0.0225 (8) | 0.0205 (8) | 0.0257 (9) | −0.0028 (6) | −0.0098 (7) | −0.0051 (7) |
C61A | 0.0314 (10) | 0.0210 (9) | 0.0369 (11) | −0.0039 (7) | −0.0116 (8) | −0.0052 (8) |
N7A | 0.0302 (8) | 0.0223 (7) | 0.0232 (7) | −0.0025 (6) | −0.0080 (6) | −0.0082 (6) |
C8A | 0.0244 (8) | 0.0230 (8) | 0.0198 (8) | −0.0021 (7) | −0.0059 (7) | −0.0069 (7) |
S1B | 0.0291 (3) | 0.0251 (3) | 0.0274 (3) | 0.00164 (18) | −0.00392 (18) | −0.01401 (19) |
C2B | 0.0247 (8) | 0.0162 (8) | 0.0204 (8) | −0.0027 (6) | −0.0013 (6) | −0.0065 (6) |
N21B | 0.0271 (8) | 0.0276 (8) | 0.0316 (8) | 0.0007 (6) | −0.0084 (6) | −0.0176 (7) |
N3B | 0.0262 (8) | 0.0217 (7) | 0.0246 (8) | −0.0019 (6) | −0.0052 (6) | −0.0102 (6) |
C4B | 0.0294 (9) | 0.0230 (9) | 0.0238 (9) | −0.0054 (7) | −0.0069 (7) | −0.0052 (7) |
C5B | 0.0272 (9) | 0.0271 (9) | 0.0308 (10) | −0.0011 (7) | −0.0069 (7) | −0.0077 (8) |
S1A—C8A | 1.7324 (18) | C61A—H62A | 0.98 |
S1A—C2A | 1.743 (2) | C61A—H63A | 0.98 |
C2A—C3A | 1.334 (3) | N7A—C8A | 1.319 (2) |
C2A—H2A | 0.95 | S1B—C5B | 1.732 (2) |
C3A—N4A | 1.393 (2) | S1B—C2B | 1.7518 (17) |
C3A—H3A | 0.95 | C2B—N3B | 1.312 (2) |
N4A—C8A | 1.363 (2) | C2B—N21B | 1.345 (2) |
N4A—C5A | 1.381 (2) | N21B—H21B | 0.88 |
C5A—C6A | 1.368 (3) | N21B—H22B | 0.88 |
C5A—H5A | 0.95 | N3B—C4B | 1.391 (2) |
C6A—N7A | 1.388 (2) | C4B—C5B | 1.340 (3) |
C6A—C61A | 1.495 (3) | C4B—H4B | 0.95 |
C61A—H61A | 0.98 | C5B—H5B | 0.95 |
C8A—S1A—C2A | 89.74 (9) | H61A—C61A—H63A | 109.5 |
C3A—C2A—S1A | 113.09 (14) | H62A—C61A—H63A | 109.5 |
C3A—C2A—H2A | 123.5 | C8A—N7A—C6A | 104.09 (14) |
S1A—C2A—H2A | 123.5 | N7A—C8A—N4A | 112.88 (15) |
C2A—C3A—N4A | 111.98 (16) | N7A—C8A—S1A | 136.17 (14) |
C2A—C3A—H3A | 124.0 | N4A—C8A—S1A | 110.93 (13) |
N4A—C3A—H3A | 124.0 | C5B—S1B—C2B | 89.06 (9) |
C8A—N4A—C5A | 106.52 (14) | N3B—C2B—N21B | 124.61 (16) |
C8A—N4A—C3A | 114.26 (15) | N3B—C2B—S1B | 114.35 (13) |
C5A—N4A—C3A | 139.17 (15) | N21B—C2B—S1B | 121.04 (13) |
C6A—C5A—N4A | 105.51 (15) | C2B—N21B—H21B | 120.0 |
C6A—C5A—H5A | 127.2 | C2B—N21B—H22B | 120.0 |
N4A—C5A—H5A | 127.2 | H21B—N21B—H22B | 120.0 |
C5A—C6A—N7A | 110.99 (16) | C2B—N3B—C4B | 109.87 (15) |
C5A—C6A—C61A | 128.64 (17) | C5B—C4B—N3B | 116.87 (17) |
N7A—C6A—C61A | 120.35 (16) | C5B—C4B—H4B | 121.6 |
C6A—C61A—H61A | 109.5 | N3B—C4B—H4B | 121.6 |
C6A—C61A—H62A | 109.5 | C4B—C5B—S1B | 109.85 (15) |
H61A—C61A—H62A | 109.5 | C4B—C5B—H5B | 125.1 |
C6A—C61A—H63A | 109.5 | S1B—C5B—H5B | 125.1 |
C8A—S1A—C2A—C3A | −0.24 (15) | C3A—N4A—C8A—N7A | 178.36 (14) |
S1A—C2A—C3A—N4A | 0.2 (2) | C5A—N4A—C8A—S1A | −178.08 (11) |
C2A—C3A—N4A—C8A | 0.0 (2) | C3A—N4A—C8A—S1A | −0.15 (19) |
C2A—C3A—N4A—C5A | 176.93 (19) | C2A—S1A—C8A—N7A | −177.8 (2) |
C8A—N4A—C5A—C6A | −0.15 (18) | C2A—S1A—C8A—N4A | 0.22 (14) |
C3A—N4A—C5A—C6A | −177.26 (19) | C5B—S1B—C2B—N3B | −0.48 (14) |
N4A—C5A—C6A—N7A | −0.16 (19) | C5B—S1B—C2B—N21B | 179.75 (16) |
N4A—C5A—C6A—C61A | 178.67 (17) | N21B—C2B—N3B—C4B | −179.87 (17) |
C5A—C6A—N7A—C8A | 0.4 (2) | S1B—C2B—N3B—C4B | 0.36 (19) |
C61A—C6A—N7A—C8A | −178.53 (16) | C2B—N3B—C4B—C5B | 0.0 (2) |
C6A—N7A—C8A—N4A | −0.5 (2) | N3B—C4B—C5B—S1B | −0.4 (2) |
C6A—N7A—C8A—S1A | 177.48 (16) | C2B—S1B—C5B—C4B | 0.45 (15) |
C5A—N4A—C8A—N7A | 0.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N21B—H21B···N3Bi | 0.88 | 2.14 | 3.010 (2) | 170 |
N21B—H22B···N7A | 0.88 | 2.10 | 2.933 (2) | 159 |
C2A—H2A···N21Bii | 0.95 | 2.59 | 3.531 (2) | 174 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x, y−1, z. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C10H16N2O2S | C6H6N2S·C3H4N2S |
Mr | 228.31 | 238.33 |
Crystal system, space group | Monoclinic, P21/n | Triclinic, P1 |
Temperature (K) | 120 | 120 |
a, b, c (Å) | 10.6248 (8), 8.6055 (5), 13.0135 (9) | 6.9195 (2), 9.1860 (2), 9.6953 (3) |
α, β, γ (°) | 90, 92.977 (4), 90 | 69.5204 (17), 71.4823 (16), 74.2770 (17) |
V (Å3) | 1188.24 (14) | 538.48 (3) |
Z | 4 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.26 | 0.47 |
Crystal size (mm) | 0.42 × 0.32 × 0.08 | 0.26 × 0.08 × 0.04 |
Data collection | ||
Diffractometer | Bruker-Nonius KappaCCD area-detector diffractometer | Bruker-Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) | Multi-scan (SORTAV; Blessing, 1995) |
Tmin, Tmax | 0.913, 0.977 | 0.885, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9227, 2093, 1668 | 12593, 2472, 2224 |
Rint | 0.082 | 0.072 |
(sin θ/λ)max (Å−1) | 0.595 | 0.653 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.106, 1.08 | 0.040, 0.105, 1.05 |
No. of reflections | 2093 | 2472 |
No. of parameters | 140 | 137 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.34 | 0.26, −0.44 |
Computer programs: DENZO (Otwinowski & Minor, 1997) and COLLECT (Nonius, 1998), DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), DENZO and COLLECT, DENZO, SCALEPACK (Otwinowski & Minor, 1997) and COLLECT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997), SHELXL97.
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···N3i | 0.88 | 2.14 | 3.016 (2) | 173 |
N21—H22···O51ii | 0.88 | 2.02 | 2.858 (2) | 158 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+3/2, y+1/2, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N21B—H21B···N3Bi | 0.88 | 2.14 | 3.010 (2) | 170 |
N21B—H22B···N7A | 0.88 | 2.10 | 2.933 (2) | 159 |
C2A—H2A···N21Bii | 0.95 | 2.59 | 3.531 (2) | 174 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x, y−1, z. |
Acknowledgements
The authors thank the EPSRC National Crystallography Service, Southampton, England.
References
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Aminothiazoles have been extensively studied for a range of biological and industrial applications (Lynch et al., 1999; Toplak et al., 2003). 2-Amino-1,3-thiazole, the structure of which was reported in 1982 (Caranoni & Reboul, 1982), is itself listed as a thyroid inhibitor (Merck Index, 2001). A search of the Cambridge Structural Database (CSD, Version?; Allen, 2002) reveals that there are 73 crystal structures containing the 2-aminothiazole moiety, with 51 of those being pure organics. The present authors have recently published a paper on the packing modes of 2-amino-4-phenyl-1,3-thiazole derivatives (Lynch et al., 2002) and have been investigating the structural aspects of 2-aminothiazole derivatives for the last six years. One such compound reported during this time was ethyl 4-tert-butyl-2-(3-phenylureido)-1,3-thiazole-5-carboxylate (Lynch & McClenaghan, 2002), which is currently the only structure of a 4-tert-butyl-5-ester derivative of an aminothiazole. However, we have recently determined the structure of ethyl 2-amino-4-tert-butyl-1,3-thiazole-5-carboxylate, (I), and report it here.
Another aminothiazole derivative is imidazo[2,1-b]thiazole, which has 11 analogues whose structures have been previously reported in the CSD. This bicyclic ring system can be prepared by refluxing a halomethylketone with 2-aminothiazole in ethanol. In an attempt to do so, using chloroacetone, an incomplete reaction yielded a mixture of the imidazo[2,1-b]thiazole derivative with the starting thiazole. The crystals that formed from the impure product were subsequently found to contain the 1:1 adduct of 6-methylimidazo[2,1-b]thiazole with 2-aminothiazole, (II), the structure of which is also reported here. \sch
The structure of (I) consists of a single molecule (Fig. 1) which associates, via hydrogen-bonding interactions, to three symmetry-equivalent molecules (Fig. 2). One symmetry-equivalent molecule forms a hydrogen-bonded R22(8) graph-set dimer (Etter, 1990) with (I) through an N—H···N interaction (Table 1), a feature common for 2-aminothiazole derivatives, while the other two associate to and from (I) through an N—H···O interaction. A similar packing mode has previously been observed in the structure of ethyl 2-amino-4-phenyl-1,3-thiazole-5-carboxylate (Lynch et al., 2002), but is not observed in any other 5-ester substituted 2-aminothiazole. This is probably due to the fact that, in each of these other structures, there are alternative exocyclic hydrogen-bonding acceptor atoms in addition to the two carboxylate O atoms. The ethyl chain twists out of the plane of the thiazole ring, with the C51—O52—C53—C54 torsion angle being 85.5 (2)°, compared with −168.5 (3)° in ethyl 4-tert-butyl-2-(3-phenylureido)-1,3-thiazole-5-carboxylate (Lynch & McClenaghan, 2002). One of the methyl groups in the tert-butyl moiety is aligned with the thiazole ring, with the N3—C4—C41—C42 torsion angle being −1.8 (2)°, similar to what was observed in ethyl 4-tert-butyl-2-(3-phenylureido)-1,3-thiazole-5-carboxylate [comparative torsion angle 7.2 (5)°].
The structure of (II) comprises two adduct molecules associated by a single hydrogen-bonding interaction from one of the 2-amino H atoms to the Nsp2 atom in the imidazothiazole (Fig. 3). Although one of the present authors (DEL) has determined 16 co-crystal structures containing 2-aminothiazole derivatives, there are only two previously reported co-crystals containing 2-aminothiazole itself (Kuz'mina & Struchkov, 1984; Moers et al., 2000), and both of these are organic salts. The structure of (II) is unique in that it is the first adduct (not an organic salt) of 2-aminothiazole. The molecules in (II) pack across an inversion centre to construct an associated quartet, with the 2-aminothiazoles forming a hydrogen-bonded R22(8) graph-set dimer (Fig. 4). Hydrogen-bonding associations are listed in Table 2. A C—H···N close contact is also observed between atom C2A and the 2-amino N atom. The distance between atoms N7A and S1B is 3.294 (3) Å.
The determination of the structure of (II), and examination of the packing associations, may now lead to a series of adducts containing 2-aminothiazole and heterocyclic bases, as opposed to continuing to try to obtain co-crystals (either adducts or organic salts) with organic acids.