organic compounds
2-Amino-2-thiazoline and its 1:1 organic salt with 2-naphthoxyacetic acid
aSchool of Science and the Environment, Coventry University, Coventry CV1 5FB, England
*Correspondence e-mail: apx106@coventry.ac.uk
The crystal structures of 2-amino-2-thiazoline, C3H6N2S, and 2-amino-2-thiazolinium 2-naphthoxyacetate, C3H7N2S+·C12H9O3−, are reported. The structure of 2-amino-2-thiazoline consists of two unique molecules that construct a convoluted hydrogen-bonded ribbon involving (8) graph-set association via both N—H⋯N and N—H⋯S interactions. The organic salt structure consists of the two molecules associated via an (8) graph-set dimer through N—H⋯O interactions, with the hydrogen-bonding network propagated via additional N—H⋯O three-centre interactions from the second 2-amine H atom.
Comment
2-Amino-2-thiazoline has been reported as a potential inducer of the reverse transformation of tumour cells, with the mechanism for anticancer action depending on strong metal–ligand binding via the N atoms (Brugarolas & Gosálvez, 1982). Alternatively, the placement of the N atoms in this molecule also makes it suitable for association with and four subsequent crystal structures have been reported (Lynch et al., 1998; Lynch, Cooper et al., 1999; Lynch, Nicholls et al., 1999). Such structures are part of a broader study of complexes of with 2-aminothiazole derivatives that has thus far resulted in the characterization of 19 published crystal structures, with three others published recently (Lynch et al., 2004). Although the structure of 2-aminothiazole was published by Caranoni & Reboul (1982), the structure of 2-amino-2-thiazoline has not been reported; the structure of this compound, (I), is reported here. 2-Naphthoxyacetic acid is used as a plant hormone to promote growth of roots on clippings and to prevent fruit from falling prematurely, although stunted growth results if it is used in excess (The Merck Index, 2001). 2-Naphthoxyacetic acid is related in structure to phenoxyacetic acid, whose chloro derivatives have been used extensively by the author for complexing with (Lynch, Cooper et al., 1999) and should thus have comparable structural properties. Furthermore, the Cambridge Structural Database (Allen, 2002) contains only four previously reported crystal structures containing the compound, of which two are the parent structure (Howie et al., 2001), thus more structures containing 2-naphthoxyacetic acid are required. For these reasons, the structure of the 1:1 organic salt of (I) with 2-naphthoxyacetic acid is also reported here, viz. (II).
Compound (I) packs with two unique thiazoline molecules associated in a hydrogen-bonded (8) graph-set dimer (Etter, 1990) via N—H⋯N interactions (Fig. 1). The hydrogen-bonding network is then extended by N—H⋯S interactions, resulting in further (8) graph-set arrangements. Hydrogen-bonding associations for this compound are listed in Table 1. Together, these interactions create a convoluted hydrogen-bonded ribbon that runs in the direction of the ac axis diagonal (Fig. 2). The incorporation of the S atoms into the hydrogen-bonding network is not observed in the structure of 2-aminothiazole but is seen in the structure of a related 2-aminothiazole derivative, viz. 2-amino-4-(4-bisphenyl)-1,3-thiazole (Lynch et al., 2002). In (I), there is a single S⋯S close contact [3.520 (5) Å] between atom S1B and the symmetry-equivalent atom at (2 − x, 1 − y, −z).
The structure of (II) comprises the organic salt of a non-planar acetate molecule and a protonated thiazoline molecule arranged in a packing mode commonly observed for these types of molecules. In contrast to its planar parent structure, the acetate chain of the naphthoxyacetate molecule in (II) adopts an anticlinical (or hooked) arrangement, as classified for phenoxyacetic acids (Smith & Kennard, 1979) and defined by the C2B—O11B—C12B—C13B torsion angle [92.8 (2)°; Fig. 3]. Packing with the thiazoline molecule has an associated effect on (2,4,5-trichlorophenoxy)acetic acid, whose structure is planar in the parent compound but hooked in the salt complex (Lynch, Cooper et al., 1999). The components of (II), like those of the vast majority of adducts/organic salts comprising a 2-amino-heterocycle and a carboxylic acid molecule, associate via an unsymmetrical (8) graph-set dimer between the N=C—NH2 site and the carboxylate group (Fig. 4). In general, this association is unsymmetrical in that the N3A⋯O14B distance, or equivalent, is (apart from a very few cases) shorter than the N21A⋯O15B distance, although the values listed in Table 2 indicate that the structure of (I) is one of the very few exceptions where the opposite has occurred. Another common feature of this association is the inconsistency of the C2A—N21A [1.302 (2) Å] and C2A—N3A [1.324 (2) Å] bond lengths, as previously highlighted (Lynch et al., 2000). The propagation of the hydrogen-bonding network via the N21A—H22A⋯O14B(x, y − 1, z) interaction has also been observed previously for these types of systems (Lynch, Nicholls et al., 1999), although the additional interaction with atom O11B is not common amongst complexes of 2-aminothiazole derivatives and phenoxyacetic acids (Lynch, Cooper et al., 1999).
The structure of (II) is actually the eighth known complex of a carboxylic acid with (I), with three others currently unpublished (Lynch et al., 2004). Elucidation of the structure of (I) is important because, as highlighted above, when collecting data on the inconsistencies in the bond distances across the N=C—NH2 site for any type of complexed 2-amino-heterocyclic compound, it is important to compare bond distances against those of the parent structure. For example, compare the C2A—N21A and C2A—N3A distances listed above with those for (I), viz. 1.348 (5)/1.267 (5) and 1.351 (5)/1.276 (5) Å for molecules A and B, respectively. The mean respective distances for the seven complex structures are 1.305 (5) and 1.314 (5) Å. Also of interest is the N3—C2—N21 (or equivalent) angle, which decreases upon association with a carboxylic acid. Compare, for (I), values of 124.8 (3) and 125.8 (3)° with that of 124.53 (17)° in (II) [the mean angle over the eight structures is 124.0 (5)°]. In one or two instances where N1A is a quaternary N atom, it might be suitable to suggest that the N1A—C2A double bond has moved to C2A—N21A, but this simple `pushing of the double bond around' does not fit a significant portion of the available data. It is the intention of the author to publish such findings in a dedicated paper, but not without each of the parent structures and a supportive list of different complexes, which the structures in this paper add to.
Experimental
Crystals of (I) were grown from an ethanol solution. For (II), equimolar amounts of (I) and 2-naphthoxyacetic acid were refluxed in ethanol for 20 min. Crystals of (II) were grown by slow evaporation of the reaction solution.
Compound (I)
Crystal data
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Refinement
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Compound (II)
Crystal data
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Refinement
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All H atoms, except for the H atom on the N+ ion in (II), were included in the at calculated positions in the riding-model approximation, with N—H distances of 0.88 Å, and C—H distances of 0.95 (aromatic H atoms) and 0.99 Å (CH2 H atoms). The Uiso(H) values were set at 1.25Ueq of the The H atom on the N+ ion was located in a difference synthesis and both the positional and displacement parameters were refined. A high Rint value for (I) was the result of weak high-angle data.
For both compounds, data collection: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); cell DENZO and COLLECT; data reduction: DENZO, SCALEPACK (Otwinowski & Minor, 1997) and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).
Supporting information
10.1107/S0108270104015604/sk1737sup1.cif
contains datablocks I, II, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270104015604/sk1737Isup2.hkl
Structure factors: contains datablock II. DOI: 10.1107/S0108270104015604/sk1737IIsup3.hkl
Crystals of (I) were grown from ethanol solution. For (II), equimolar amounts of (I) and 2-naphthoxyacetic acid were refluxed in ethanol for 20 min. Crystals of (II) were grown from the slow evaporation of the reaction solution.
All H atoms, except for the H atom on the N+ ion in (II), were included in the
at calculated positions, in the riding-model approximation, with N—H distances of 0.88 Å, and C—H distances of 0.95 (aromatic H atoms) and 0.99 Å (CH2 H atoms). The isotropic displacement parameters were set to 1.25Ueq of the The H atom on the N+ ion was located in a difference synthesis and both the positional and the displacement parameters were refined. A high Rint value for (I) was the result of weak high-angle data.For both compounds, data collection: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); cell
DENZO and COLLECT; data reduction: DENZO, SCALEPACK (Otwinowski & Minor, 1997) and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).Fig. 1. The molecular configuration and atom-numbering scheme for (I). Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. A packing diagram for (I). [Symmetry codes: (i) x − 1/2, −y + 1/2, z + 1/2; (ii) x + 1/2, −y + 1/2, z − 1/2.] | |
Fig. 3. The molecular configuration and atom-numbering scheme for (II). Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 4. A packing diagram for (II). [Symmetry code: (i) x, y − 1, z.] |
C3H6N2S | F(000) = 432 |
Mr = 102.17 | Dx = 1.481 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 8580 reflections |
a = 5.8980 (5) Å | θ = 2.9–27.5° |
b = 14.8324 (12) Å | µ = 0.53 mm−1 |
c = 10.7092 (8) Å | T = 120 K |
β = 101.974 (4)° | Prism, yellow |
V = 916.47 (13) Å3 | 0.20 × 0.20 × 0.10 mm |
Z = 8 |
Nonius KappaCCD area-detector diffractometer | 2101 independent reflections |
Radiation source: Nonius FR591 rotating anode | 1149 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.112 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.4° |
ϕ and ω scans | h = −7→7 |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | k = −19→19 |
Tmin = 0.826, Tmax = 0.948 | l = −13→13 |
10396 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.061 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.160 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0802P)2] where P = (Fo2 + 2Fc2)/3 |
2101 reflections | (Δ/σ)max < 0.001 |
109 parameters | Δρmax = 0.49 e Å−3 |
0 restraints | Δρmin = −0.41 e Å−3 |
C3H6N2S | V = 916.47 (13) Å3 |
Mr = 102.17 | Z = 8 |
Monoclinic, P21/n | Mo Kα radiation |
a = 5.8980 (5) Å | µ = 0.53 mm−1 |
b = 14.8324 (12) Å | T = 120 K |
c = 10.7092 (8) Å | 0.20 × 0.20 × 0.10 mm |
β = 101.974 (4)° |
Nonius KappaCCD area-detector diffractometer | 2101 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 1149 reflections with I > 2σ(I) |
Tmin = 0.826, Tmax = 0.948 | Rint = 0.112 |
10396 measured reflections |
R[F2 > 2σ(F2)] = 0.061 | 0 restraints |
wR(F2) = 0.160 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.49 e Å−3 |
2101 reflections | Δρmin = −0.41 e Å−3 |
109 parameters |
x | y | z | Uiso*/Ueq | ||
S1A | −0.02730 (17) | 0.06496 (7) | 0.20321 (9) | 0.0269 (3) | |
C2A | 0.1754 (6) | 0.1438 (2) | 0.1644 (4) | 0.0219 (8) | |
N21A | 0.3725 (6) | 0.1576 (2) | 0.2517 (3) | 0.0295 (8) | |
H21A | 0.4788 | 0.1946 | 0.2348 | 0.037* | |
H22A | 0.3949 | 0.1296 | 0.3257 | 0.037* | |
N3A | 0.1270 (5) | 0.1808 (2) | 0.0554 (3) | 0.0263 (8) | |
C4A | −0.0968 (7) | 0.1525 (3) | −0.0198 (4) | 0.0271 (9) | |
H41A | −0.1959 | 0.2062 | −0.0434 | 0.034* | |
H42A | −0.0732 | 0.1238 | −0.0996 | 0.034* | |
C5A | −0.2206 (7) | 0.0864 (3) | 0.0520 (4) | 0.0309 (10) | |
H51A | −0.3679 | 0.1127 | 0.0655 | 0.039* | |
H52A | −0.2554 | 0.0297 | 0.0031 | 0.039* | |
S1B | 0.77862 (17) | 0.43581 (7) | 0.04456 (9) | 0.0246 (3) | |
C2B | 0.5938 (6) | 0.3476 (2) | 0.0781 (4) | 0.0228 (8) | |
N21B | 0.4037 (5) | 0.3289 (2) | −0.0124 (3) | 0.0289 (8) | |
H21B | 0.3088 | 0.2856 | 0.0002 | 0.036* | |
H22B | 0.3747 | 0.3599 | −0.0840 | 0.036* | |
N3B | 0.6540 (5) | 0.3076 (2) | 0.1853 (3) | 0.0260 (8) | |
C4B | 0.8603 (6) | 0.3461 (3) | 0.2639 (4) | 0.0270 (9) | |
H41B | 0.9621 | 0.2972 | 0.3062 | 0.034* | |
H42B | 0.8163 | 0.3841 | 0.3311 | 0.034* | |
C5B | 0.9918 (7) | 0.4032 (3) | 0.1840 (4) | 0.0306 (10) | |
H51B | 1.1178 | 0.3678 | 0.1592 | 0.038* | |
H52B | 1.0599 | 0.4571 | 0.2322 | 0.038* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1A | 0.0240 (6) | 0.0311 (6) | 0.0266 (6) | −0.0060 (4) | 0.0077 (4) | 0.0016 (4) |
C2A | 0.020 (2) | 0.0226 (19) | 0.024 (2) | −0.0013 (15) | 0.0066 (17) | −0.0004 (16) |
N21A | 0.0234 (18) | 0.0421 (19) | 0.0225 (18) | −0.0074 (16) | 0.0039 (14) | 0.0078 (15) |
N3A | 0.0228 (18) | 0.0346 (18) | 0.0217 (18) | −0.0079 (14) | 0.0049 (14) | 0.0011 (15) |
C4A | 0.024 (2) | 0.031 (2) | 0.026 (2) | −0.0034 (17) | 0.0041 (17) | 0.0014 (18) |
C5A | 0.020 (2) | 0.043 (3) | 0.030 (2) | −0.0073 (18) | 0.0067 (19) | 0.0003 (19) |
S1B | 0.0229 (6) | 0.0269 (5) | 0.0253 (6) | 0.0042 (4) | 0.0079 (4) | −0.0014 (4) |
C2B | 0.019 (2) | 0.0241 (19) | 0.028 (2) | 0.0016 (16) | 0.0109 (17) | 0.0035 (17) |
N21B | 0.0272 (19) | 0.0346 (18) | 0.0232 (18) | 0.0097 (14) | 0.0014 (15) | −0.0031 (15) |
N3B | 0.0213 (18) | 0.0331 (18) | 0.0229 (18) | 0.0037 (14) | 0.0034 (15) | −0.0018 (14) |
C4B | 0.020 (2) | 0.032 (2) | 0.028 (2) | 0.0064 (17) | 0.0043 (17) | −0.0013 (18) |
C5B | 0.024 (2) | 0.040 (2) | 0.027 (2) | 0.0027 (18) | 0.0037 (18) | −0.0074 (19) |
S1A—C2A | 1.782 (4) | S1B—C2B | 1.786 (4) |
S1A—C5A | 1.805 (4) | S1B—C5B | 1.807 (4) |
C2A—N3A | 1.267 (5) | C2B—N3B | 1.276 (5) |
C2A—N21A | 1.348 (5) | C2B—N21B | 1.351 (5) |
N21A—H21A | 0.88 | N21B—H21B | 0.88 |
N21A—H22A | 0.88 | N21B—H22B | 0.88 |
N3A—C4A | 1.458 (5) | N3B—C4B | 1.446 (5) |
C4A—C5A | 1.522 (5) | C4B—C5B | 1.525 (5) |
C4A—H41A | 0.99 | C4B—H41B | 0.99 |
C4A—H42A | 0.99 | C4B—H42B | 0.99 |
C5A—H51A | 0.99 | C5B—H51B | 0.99 |
C5A—H52A | 0.99 | C5B—H52B | 0.99 |
C2A—S1A—C5A | 90.24 (18) | C2B—S1B—C5B | 89.24 (18) |
N3A—C2A—N21A | 124.8 (3) | N3B—C2B—N21B | 125.8 (3) |
N3A—C2A—S1A | 117.7 (3) | N3B—C2B—S1B | 117.1 (3) |
N21A—C2A—S1A | 117.5 (3) | N21B—C2B—S1B | 117.2 (3) |
C2A—N21A—H21A | 120.0 | C2B—N21B—H21B | 120.0 |
C2A—N21A—H22A | 120.0 | C2B—N21B—H22B | 120.0 |
H21A—N21A—H22A | 120.0 | H21B—N21B—H22B | 120.0 |
C2A—N3A—C4A | 112.9 (3) | C2B—N3B—C4B | 112.5 (3) |
N3A—C4A—C5A | 112.4 (3) | N3B—C4B—C5B | 110.9 (3) |
N3A—C4A—H41A | 109.1 | N3B—C4B—H41B | 109.5 |
C5A—C4A—H41A | 109.1 | C5B—C4B—H41B | 109.5 |
N3A—C4A—H42A | 109.1 | N3B—C4B—H42B | 109.5 |
C5A—C4A—H42A | 109.1 | C5B—C4B—H42B | 109.5 |
H41A—C4A—H42A | 107.9 | H41B—C4B—H42B | 108.0 |
C4A—C5A—S1A | 106.7 (3) | C4B—C5B—S1B | 105.3 (3) |
C4A—C5A—H51A | 110.4 | C4B—C5B—H51B | 110.7 |
S1A—C5A—H51A | 110.4 | S1B—C5B—H51B | 110.7 |
C4A—C5A—H52A | 110.4 | C4B—C5B—H52B | 110.7 |
S1A—C5A—H52A | 110.4 | S1B—C5B—H52B | 110.7 |
H51A—C5A—H52A | 108.6 | H51B—C5B—H52B | 108.8 |
C5A—S1A—C2A—N3A | −2.7 (3) | C5B—S1B—C2B—N3B | 9.6 (3) |
C5A—S1A—C2A—N21A | 179.3 (3) | C5B—S1B—C2B—N21B | −170.0 (3) |
N21A—C2A—N3A—C4A | 179.2 (4) | N21B—C2B—N3B—C4B | −177.2 (4) |
S1A—C2A—N3A—C4A | 1.4 (4) | S1B—C2B—N3B—C4B | 3.3 (4) |
C2A—N3A—C4A—C5A | 1.0 (5) | C2B—N3B—C4B—C5B | −17.9 (5) |
N3A—C4A—C5A—S1A | −2.8 (4) | N3B—C4B—C5B—S1B | 23.4 (4) |
C2A—S1A—C5A—C4A | 2.9 (3) | C2B—S1B—C5B—C4B | −17.7 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N21A—H21A···N3B | 0.88 | 2.09 | 2.950 (5) | 164 |
N21A—H22A···S1Bi | 0.88 | 2.75 | 3.575 (3) | 156 |
N21B—H21B···N3A | 0.88 | 2.04 | 2.916 (5) | 171 |
N21B—H22B···S1Aii | 0.88 | 2.70 | 3.526 (3) | 156 |
Symmetry codes: (i) x−1/2, −y+1/2, z+1/2; (ii) x+1/2, −y+1/2, z−1/2. |
C3H7N2S+·C12H9O3− | F(000) = 640 |
Mr = 304.36 | Dx = 1.441 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4067 reflections |
a = 8.3669 (2) Å | θ = 2.9–27.5° |
b = 6.3707 (1) Å | µ = 0.24 mm−1 |
c = 26.3457 (6) Å | T = 120 K |
β = 92.1992 (9)° | Plate, colourless |
V = 1403.27 (5) Å3 | 0.32 × 0.10 × 0.04 mm |
Z = 4 |
Nonius KappaCCD area-detector diffractometer | 3183 independent reflections |
Radiation source: Nonius FR591 rotating anode | 2546 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.091 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.4°, θmin = 3.1° |
ϕ and ω scans | h = −10→10 |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | k = −7→8 |
Tmin = 0.710, Tmax = 0.990 | l = −34→34 |
15534 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0503P)2 + 0.8055P] where P = (Fo2 + 2Fc2)/3 |
3183 reflections | (Δ/σ)max < 0.001 |
194 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
C3H7N2S+·C12H9O3− | V = 1403.27 (5) Å3 |
Mr = 304.36 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.3669 (2) Å | µ = 0.24 mm−1 |
b = 6.3707 (1) Å | T = 120 K |
c = 26.3457 (6) Å | 0.32 × 0.10 × 0.04 mm |
β = 92.1992 (9)° |
Nonius KappaCCD area-detector diffractometer | 3183 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 2546 reflections with I > 2σ(I) |
Tmin = 0.710, Tmax = 0.990 | Rint = 0.091 |
15534 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.121 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.25 e Å−3 |
3183 reflections | Δρmin = −0.34 e Å−3 |
194 parameters |
x | y | z | Uiso*/Ueq | ||
S1A | −0.19892 (6) | −0.56175 (8) | 0.06199 (19) | 0.02416 (16) | |
C2A | −0.0340 (2) | −0.3943 (3) | 0.06063 (7) | 0.0173 (4) | |
N21A | 0.11091 (18) | −0.4589 (3) | 0.07144 (6) | 0.0198 (4) | |
H21A | 0.1913 | −0.3698 | 0.0712 | 0.025* | |
H22A | 0.1285 | −0.5917 | 0.0790 | 0.025* | |
N3A | −0.07266 (19) | −0.1983 (3) | 0.04883 (6) | 0.0188 (3) | |
H3A | −0.005 (3) | −0.097 (4) | 0.0543 (8) | 0.023 (6)* | |
C4A | −0.2446 (2) | −0.1539 (3) | 0.04747 (7) | 0.0218 (4) | |
H41A | −0.2715 | −0.0441 | 0.0220 | 0.027* | |
H42A | −0.2781 | −0.1050 | 0.0811 | 0.027* | |
C5A | −0.3271 (2) | −0.3597 (3) | 0.03314 (8) | 0.0228 (4) | |
H51A | −0.3356 | −0.3768 | −0.0042 | 0.029* | |
H52A | −0.4356 | −0.3655 | 0.0468 | 0.029* | |
C1B | 0.2758 (2) | 0.3025 (3) | 0.19187 (7) | 0.0194 (4) | |
H1B | 0.2442 | 0.1666 | 0.1805 | 0.024* | |
C2B | 0.3684 (2) | 0.4257 (3) | 0.16244 (7) | 0.0177 (4) | |
C3B | 0.4200 (2) | 0.6263 (3) | 0.17909 (7) | 0.0206 (4) | |
H3B | 0.4866 | 0.7082 | 0.1584 | 0.026* | |
C4B | 0.3745 (2) | 0.7029 (3) | 0.22471 (7) | 0.0215 (4) | |
H4B | 0.4095 | 0.8381 | 0.2355 | 0.027* | |
C5B | 0.2202 (2) | 0.6600 (3) | 0.30307 (7) | 0.0241 (4) | |
H5B | 0.2536 | 0.7948 | 0.3147 | 0.030* | |
C6B | 0.1201 (2) | 0.5432 (3) | 0.33145 (7) | 0.0258 (5) | |
H6B | 0.0818 | 0.5985 | 0.3622 | 0.032* | |
C7B | 0.0730 (2) | 0.3398 (3) | 0.31514 (7) | 0.0274 (5) | |
H7B | 0.0042 | 0.2588 | 0.3353 | 0.034* | |
C8B | 0.1256 (2) | 0.2589 (3) | 0.27081 (7) | 0.0234 (4) | |
H8B | 0.0945 | 0.1213 | 0.2607 | 0.029* | |
C9B | 0.2266 (2) | 0.3787 (3) | 0.23966 (7) | 0.0201 (4) | |
C10B | 0.2751 (2) | 0.5823 (3) | 0.25623 (7) | 0.0199 (4) | |
O11B | 0.41670 (15) | 0.3708 (2) | 0.11458 (5) | 0.0190 (3) | |
C12B | 0.4426 (2) | 0.1542 (3) | 0.10439 (8) | 0.0209 (4) | |
H12B | 0.4765 | 0.0852 | 0.1367 | 0.026* | |
H13B | 0.5329 | 0.1433 | 0.0813 | 0.026* | |
C13B | 0.3018 (2) | 0.0295 (3) | 0.08086 (7) | 0.0177 (4) | |
O14B | 0.16423 (15) | 0.1099 (2) | 0.07750 (5) | 0.0199 (3) | |
O15B | 0.34007 (16) | −0.15009 (2) | 0.06632 (5) | 0.0239 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1A | 0.0187 (3) | 0.0224 (3) | 0.0313 (3) | 0.00326 (18) | −0.00004 (19) | −0.0037 (2) |
C2A | 0.0178 (9) | 0.0186 (10) | 0.0157 (8) | 0.0009 (7) | 0.0024 (7) | 0.0017 (7) |
N21A | 0.0162 (8) | 0.0173 (9) | 0.0259 (8) | −0.0007 (6) | −0.0005 (6) | −0.0011 (6) |
N3A | 0.0152 (8) | 0.0182 (9) | 0.0229 (8) | −0.0009 (7) | −0.0005 (6) | 0.0009 (7) |
C4A | 0.0170 (9) | 0.0251 (11) | 0.0231 (10) | −0.0058 (8) | −0.0003 (7) | 0.0008 (8) |
C5A | 0.0165 (9) | 0.0267 (11) | 0.0253 (10) | −0.0024 (8) | 0.0003 (7) | 0.0004 (8) |
C1B | 0.0177 (9) | 0.0178 (10) | 0.0225 (10) | 0.0003 (7) | −0.0019 (7) | −0.0003 (7) |
C2B | 0.0149 (9) | 0.0197 (10) | 0.0185 (9) | −0.0031 (7) | −0.0014 (7) | 0.0001 (7) |
C3B | 0.0183 (9) | 0.0208 (10) | 0.0226 (10) | 0.0012 (7) | −0.0001 (7) | −0.0036 (8) |
C4B | 0.0213 (9) | 0.0187 (10) | 0.0241 (10) | 0.0010 (8) | −0.0026 (7) | 0.0015 (8) |
C5B | 0.0213 (10) | 0.0300 (12) | 0.0207 (10) | −0.0030 (8) | −0.0047 (8) | 0.0022 (8) |
C6B | 0.0224 (10) | 0.0369 (13) | 0.0179 (10) | −0.0050 (8) | −0.0019 (8) | 0.0009 (8) |
C7B | 0.0214 (10) | 0.0394 (13) | 0.0213 (10) | 0.0020 (9) | −0.0005 (8) | −0.0064 (9) |
C8B | 0.0218 (10) | 0.0263 (11) | 0.0218 (10) | 0.0042 (8) | −0.0034 (7) | −0.0044 (8) |
C9B | 0.0150 (9) | 0.0241 (10) | 0.0208 (9) | −0.0002 (7) | −0.0040 (7) | −0.0028 (8) |
C10B | 0.0163 (9) | 0.0216 (10) | 0.0214 (9) | −0.0031 (7) | −0.0039 (7) | −0.0008 (8) |
O11B | 0.0194 (7) | 0.0172 (7) | 0.0206 (7) | −0.0004 (5) | 0.0032 (5) | 0.0014 (5) |
C12B | 0.0163 (9) | 0.0188 (10) | 0.0277 (10) | −0.0017 (7) | 0.0019 (7) | 0.0023 (8) |
C13B | 0.0175 (9) | 0.0190 (10) | 0.0167 (9) | −0.0012 (7) | 0.0042 (7) | −0.0029 (7) |
O14B | 0.0152 (6) | 0.0200 (7) | 0.0245 (7) | −0.0006 (5) | 0.0001 (5) | 0.0008 (5) |
O15B | 0.0221 (7) | 0.0189 (8) | 0.0309 (8) | −0.0016 (5) | 0.0018 (6) | 0.0038 (6) |
S1A—C2A | 1.7455 (19) | C3B—H3B | 0.95 |
S1A—C5A | 1.823 (2) | C4B—C10B | 1.423 (3) |
C2A—N21A | 1.302 (2) | C4B—H4B | 0.95 |
C2A—N3A | 1.324 (2) | C5B—C6B | 1.365 (3) |
N21A—H21A | 0.88 | C5B—C10B | 1.422 (3) |
N21A—H22A | 0.88 | C5B—H5B | 0.95 |
N3A—C4A | 1.465 (2) | C6B—C7B | 1.417 (3) |
N3A—H3A | 0.87 (2) | C6B—H6B | 0.95 |
C4A—C5A | 1.523 (3) | C7B—C8B | 1.365 (3) |
C4A—H41A | 0.99 | C7B—H7B | 0.95 |
C4A—H42A | 0.99 | C8B—C9B | 1.422 (3) |
C5A—H51A | 0.99 | C8B—H8B | 0.95 |
C5A—H52A | 0.99 | C9B—C10B | 1.423 (3) |
C1B—C2B | 1.365 (3) | O11B—C12B | 1.424 (2) |
C1B—C9B | 1.425 (3) | C12B—C13B | 1.532 (3) |
C1B—H1B | 0.95 | C12B—H12B | 0.99 |
C2B—O11B | 1.384 (2) | C12B—H13B | 0.99 |
C2B—C3B | 1.413 (3) | C13B—O15B | 1.252 (2) |
C3B—C4B | 1.365 (3) | C13B—O14B | 1.260 (2) |
C2A—S1A—C5A | 90.73 (9) | C3B—C4B—C10B | 120.65 (18) |
N21A—C2A—N3A | 124.53 (17) | C3B—C4B—H4B | 119.7 |
N21A—C2A—S1A | 122.19 (15) | C10B—C4B—H4B | 119.7 |
N3A—C2A—S1A | 113.27 (14) | C6B—C5B—C10B | 120.7 (2) |
C2A—N21A—H21A | 120.0 | C6B—C5B—H5B | 119.6 |
C2A—N21A—H22A | 120.0 | C10B—C5B—H5B | 119.6 |
H21A—N21A—H22A | 120.0 | C5B—C6B—C7B | 120.13 (19) |
C2A—N3A—C4A | 114.77 (16) | C5B—C6B—H6B | 119.9 |
C2A—N3A—H3A | 120.5 (15) | C7B—C6B—H6B | 119.9 |
C4A—N3A—H3A | 120.0 (15) | C8B—C7B—C6B | 120.66 (19) |
N3A—C4A—C5A | 105.96 (15) | C8B—C7B—H7B | 119.7 |
N3A—C4A—H41A | 110.5 | C6B—C7B—H7B | 119.7 |
C5A—C4A—H41A | 110.5 | C7B—C8B—C9B | 120.64 (19) |
N3A—C4A—H42A | 110.5 | C7B—C8B—H8B | 119.7 |
C5A—C4A—H42A | 110.5 | C9B—C8B—H8B | 119.7 |
H41A—C4A—H42A | 108.7 | C8B—C9B—C10B | 118.74 (18) |
C4A—C5A—S1A | 104.53 (12) | C8B—C9B—C1B | 121.69 (18) |
C4A—C5A—H51A | 110.8 | C10B—C9B—C1B | 119.54 (17) |
S1A—C5A—H51A | 110.8 | C5B—C10B—C9B | 119.08 (18) |
C4A—C5A—H52A | 110.8 | C5B—C10B—C4B | 122.26 (18) |
S1A—C5A—H52A | 110.8 | C9B—C10B—C4B | 118.65 (17) |
H51A—C5A—H52A | 108.9 | C2B—O11B—C12B | 117.93 (14) |
C2B—C1B—C9B | 119.71 (18) | O11B—C12B—C13B | 117.32 (15) |
C2B—C1B—H1B | 120.1 | O11B—C12B—H12B | 108.0 |
C9B—C1B—H1B | 120.1 | C13B—C12B—H12B | 108.0 |
C1B—C2B—O11B | 124.35 (17) | O11B—C12B—H13B | 108.0 |
C1B—C2B—C3B | 121.10 (17) | C13B—C12B—H13B | 108.0 |
O11B—C2B—C3B | 114.53 (16) | H12B—C12B—H13B | 107.2 |
C4B—C3B—C2B | 120.32 (18) | O15B—C13B—O14B | 126.43 (17) |
C4B—C3B—H3B | 119.8 | O15B—C13B—C12B | 113.33 (15) |
C2B—C3B—H3B | 119.8 | O14B—C13B—C12B | 120.24 (16) |
C5A—S1A—C2A—N21A | −171.09 (16) | C7B—C8B—C9B—C1B | −176.41 (17) |
C5A—S1A—C2A—N3A | 10.36 (15) | C2B—C1B—C9B—C8B | 177.84 (17) |
N21A—C2A—N3A—C4A | −169.07 (17) | C2B—C1B—C9B—C10B | −0.2 (3) |
S1A—C2A—N3A—C4A | 9.4 (2) | C6B—C5B—C10B—C9B | −1.2 (3) |
C2A—N3A—C4A—C5A | −28.8 (2) | C6B—C5B—C10B—C4B | 177.48 (17) |
N3A—C4A—C5A—S1A | 33.38 (17) | C8B—C9B—C10B—C5B | −0.5 (3) |
C2A—S1A—C5A—C4A | −25.22 (14) | C1B—C9B—C10B—C5B | 177.55 (16) |
C9B—C1B—C2B—O11B | −177.00 (16) | C8B—C9B—C10B—C4B | −179.21 (17) |
C9B—C1B—C2B—C3B | 1.5 (3) | C1B—C9B—C10B—C4B | −1.1 (3) |
C1B—C2B—C3B—C4B | −1.5 (3) | C3B—C4B—C10B—C5B | −177.51 (17) |
O11B—C2B—C3B—C4B | 177.12 (16) | C3B—C4B—C10B—C9B | 1.1 (3) |
C2B—C3B—C4B—C10B | 0.2 (3) | C1B—C2B—O11B—C12B | −31.7 (2) |
C10B—C5B—C6B—C7B | 1.8 (3) | C3B—C2B—O11B—C12B | 149.67 (16) |
C5B—C6B—C7B—C8B | −0.6 (3) | C2B—O11B—C12B—C13B | 92.8 (2) |
C6B—C7B—C8B—C9B | −1.1 (3) | O11B—C12B—C13B—O15B | 170.22 (16) |
C7B—C8B—C9B—C10B | 1.6 (3) | O11B—C12B—C13B—O14B | −9.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N21A—H21A···O15B | 0.88 | 1.88 | 2.754 (2) | 171 |
N21A—H22A···O14Bi | 0.88 | 1.93 | 2.787 (2) | 166 |
N21A—H22A···O11Bi | 0.88 | 2.56 | 2.965 (2) | 109 |
N3A—H3A···O14B | 0.87 (2) | 2.01 (2) | 2.871 (2) | 170 (2) |
Symmetry code: (i) x, y−1, z. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C3H6N2S | C3H7N2S+·C12H9O3− |
Mr | 102.17 | 304.36 |
Crystal system, space group | Monoclinic, P21/n | Monoclinic, P21/c |
Temperature (K) | 120 | 120 |
a, b, c (Å) | 5.8980 (5), 14.8324 (12), 10.7092 (8) | 8.3669 (2), 6.3707 (1), 26.3457 (6) |
β (°) | 101.974 (4) | 92.1992 (9) |
V (Å3) | 916.47 (13) | 1403.27 (5) |
Z | 8 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.53 | 0.24 |
Crystal size (mm) | 0.20 × 0.20 × 0.10 | 0.32 × 0.10 × 0.04 |
Data collection | ||
Diffractometer | Nonius KappaCCD area-detector diffractometer | Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) | Multi-scan (SORTAV; Blessing, 1995) |
Tmin, Tmax | 0.826, 0.948 | 0.710, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10396, 2101, 1149 | 15534, 3183, 2546 |
Rint | 0.112 | 0.091 |
(sin θ/λ)max (Å−1) | 0.650 | 0.648 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.061, 0.160, 1.02 | 0.046, 0.121, 1.02 |
No. of reflections | 2101 | 3183 |
No. of parameters | 109 | 194 |
H-atom treatment | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.49, −0.41 | 0.25, −0.34 |
Computer programs: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), DENZO and COLLECT, DENZO, SCALEPACK (Otwinowski & Minor, 1997) and COLLECT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N21A—H21A···N3B | 0.88 | 2.09 | 2.950 (5) | 164 |
N21A—H22A···S1Bi | 0.88 | 2.75 | 3.575 (3) | 156 |
N21B—H21B···N3A | 0.88 | 2.04 | 2.916 (5) | 171 |
N21B—H22B···S1Aii | 0.88 | 2.70 | 3.526 (3) | 156 |
Symmetry codes: (i) x−1/2, −y+1/2, z+1/2; (ii) x+1/2, −y+1/2, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N21A—H21A···O15B | 0.88 | 1.88 | 2.754 (2) | 171 |
N21A—H22A···O14Bi | 0.88 | 1.93 | 2.787 (2) | 166 |
N21A—H22A···O11Bi | 0.88 | 2.56 | 2.965 (2) | 109 |
N3A—H3A···O14B | 0.87 (2) | 2.01 (2) | 2.871 (2) | 170 (2) |
Symmetry code: (i) x, y−1, z. |
Acknowledgements
The authors thank the EPSRC National Crystallography Service (Southampton, England).
References
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2-Amino-2-thiazoline has been reported as a potential inducer of the reverse transformation of tumour cells, with the mechanism for anticancer action depending on strong metal–ligand binding via the N atoms (Brugarolas & Gosálvez, 1982). Alternatively, the placement of the N atoms in this molecule also makes it suitable for association with carboxylic acids, and four subsequent crystal structures have been reported (Lynch et al., 1998; Lynch et al., 1999a; Lynch et al., 1999b). Such structures are part of a broader study of complexes of carboxylic acids with 2-aminothiazole derivatives that has thus far resulted in the characterization of 19 published crystal structures, with another four currently awaiting publication (Lynch et al., 2004). Although the structure of 2-aminothiazole was published by Caranoni & Reboul (1982), the structure of 2-amino-2-thiazoline has not been reported; the structure of this compound, C3H6N2S, (I), is reported here. 2-Naphthoxyacetic acid is used as a plant hormone, to promote growth of roots on clippings and to prevent fruit from falling prematurely, although stunted growth results if it is used in excess (The Merck Index, 2001). 2-Naphthoxyacetic acid is related in structure to phenoxyacetic acid, whose chloro-derivatives have been used extensively by the author for complexing with carboxylic acids (Lynch et al., 1999a), and should thus have comparable structural properties. Furthermore, the Cambridge Crystallographic Database (Allen, 2002) reveals that there are only four previously reported crystal structures containing the compound, of which two are both the parent structure (Howie et al., 2001), thus more structures containing 2-naphthoxyacetic acid are required. For these reasons the 1:1 organic salt structure of (I) with 2-naphthoxyacetic acid, (C3H8N2S)+(C12H8O3)−, (II), is also reported here.
Compound (I) packs with two unique thiazoline molecules associated in a hydrogen-bonded R22(8) graph-set dimer (Etter, 1990) via N—H···N interactions (Fig. 1). The hydrogen-bonding network is then extended by N—H···S interactions, resulting in further R22(8) graph-set arrangements. Hydrogen-bonding associations for this compound are listed in Table 1. Together, these interactions create a convoluted hydrogen-bonded ribbon that runs in the direction of the ac axis diagonal. The incorporation of the S atoms into the hydrogen-bonding network to form a hydrogen-bonded ribbon is not observed in the structure of 2-aminothiazole but is seen in the structure of another related 2-aminothiazole derivative, 2-amino-4-(4-bisphenyl)-1,3-thiazole (Lynch et al., 2002). In (I), there is a single S···S close contact of 3.520 (5) Å between atom S1B and a symmetry-equivalent atom (2 − x, 1 − y, −z).
The structure of (II) comprises the organic salt of a non-planar acetate molecule and a protonated thiazoline molecule arranged in a packing mode commonly observed for these types of molecules. In contrast to its planar parent structure, the acetate chain of the naphthoxyacetate molecule in (II) adopts an anticlinical (or hooked) arrangement, as classified for phenoxyacetic acids (Smith & Kennard, 1979) and defined by the equivalent C2B—O11B—C12B—C13B torsion angle [92.8 (2)°; Fig. 3]. Packing with the thiazoline molecule had an associated effect on (2,4,5-trichlorophenoxy)acetic acid, whose parent structure is planar but is hooked in the salt complex (Lynch et al., 1999a). Like the vast majority of adducts/organic salts comprising a 2-aminoheterocyclic and a carboxylic acid, the components of (II) associate via an unsymmetrical R22(8) graph-set dimer between the N=C—NH2 site and the carboxylate group (Fig. 4). In general, this association is unsymmetrical in that the N3A···O14B distance, or equivalent, is (apart from very few cases) shorter than the N21A···O15B distance, although the values listed in Table 2 indicate that this structure is one of the very few exceptions where the opposite has occurred. Another common feature of this association includes the inconsistency of the C2A—N21A [1.302 (2) Å] and C2A—N3A [1.324 (2) Å] bond lengths, as previously highlighted (Lynch et al., 2000). The propagation of the hydrogen-bonding network via the N21A—H22A···O14B interaction has also been previously observed for these types of systems (Lynch et al., 1999b), although the additional interaction with atom O11B is not common amongst complexes of 2-aminothaizole derivatives and phenoxyacetic acids (Lynch et al., 1999a).
The structure of (II) is actually the eighth known complex of a carboxylic acid with (I), with three others currently unpublished (Lynch et al., 2004). Elucidation of the structure of (I) is important because in each case where the author has been collecting data on the inconsistencies in the bond distances across the N=C—NH2 site, as highlighted above, for any type of complexed 2-aminoheterocyclic compound, it is important to compare bond distances against those of the parent structure. For example, compare the C2A—N21A and C2A—N3A distances listed above against those for (I), viz. 1.348 (5) and 1.267 (5) Å, and 1.351 (5) and 1.276 (5) Å, for molecules A and B, respectively. The mean respective distances for the seven complex structures are 1.305 (5) and 1.314 (5) Å. Also of interest is the N3—C2—N21 (or equivalent) angle that decreases upon association with a carboxylic acid. Compare, for (I), 124.8 (3) and 125.8 (3)° against 124.53 (17)° in (II) (mean angle over the eight structures = 124.0 (5)°]. In one or two instances where N1A is a quaternary N atom it might be suitable to suggest that the N1A—C2A double bond has moved to C2A—N21A, but this simple `pushing of the double bond around' does not fit a significant portion of the available data. It is the author's full intention to publish such findings in a dedicated paper, but not without each of the parent structures and a supportive list of different complexes, which the structures in this paper add to.