organic compounds
6-(4-Bromophenyl)-6,7-dihydro-1,3-dioxolo[4,5-g]quinolin-8(5H)-one: bilayers built from N—H⋯O, C—H⋯O and C—H⋯π(arene) hydrogen bonds
aDepartment of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen AB24 3UE, Scotland, bDepartamento de Química Inorgánica y Orgánica, Universidad de Jaén, 23071 Jaén, Spain, cGrupo de Investigación de Compuestos Heterociclícos, Departamento de Química, Universidad de Valle, AA 25360, Colombia, and dSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland
*Correspondence e-mail: cg@st-andrews.ac.uk
Molecules of the title compound, C16H12BrNO3, exhibit a polarized molecular–electronic structure. A combination of one N—H⋯O hydrogen bond and one C—H⋯O hydrogen bond links the molecules into sheets, and pairs of sheets are linked into bilayers by a single C—H⋯π(arene) hydrogen bond.
Comment
As part of a synthetic programme targeted on compounds displaying important biological properties, we have recently focused on hydroquinoline derivatives because the dioxolotetrahydroquinolin-8-one structure, for example, has been found in compounds used as antimitotic and antitumour agents (Prager & Thredgold, 1968; Donnelly & Farrell, 1990; Kurasawa et al., 2000; Zhang et al., 2000). We report here the molecular and supramolecular structure of 6-(4-bromo-phenyl)-6,7-dihydro-1,3-dioxolo[4,5-g]quinolin-8(5H)-one, (I), which has been synthesized by 6-endo intramolecular from the corresponding 2-aminochalcone; the structures of a range of these precursors have been reported recently (Low, Cobo, Nogueras et al., 2004).
The molecule of (I) contains a stereogenic centre at atom C10 (Fig. 1); the reference molecule was selected as one having an S configuration, but the centrosymmetric accommodates equal numbers of R and S enantiomers. In addition to the two planar carbocyclic rings, the molecule contains two heterocyclic rings, both of which are non-planar. The five-membered ring is folded across the O⋯O line, and for the atom sequence O1—C2—O3—C3a—C7a, the ring-puckering parameter φ2 (Cremer & Pople, 1975) has a value of 37 (2)°, consistent with an (Evans & Boeyens, 1989). For the nitrogen-containing ring, the parameters corresponding to the atom sequence N5—C5—C6—C8—C9—C10 are θ = 52.3 (5)° and φ = 291.5 (6)°, corresponding closely to an where the idealized values are θ = 54.7° and φ = (60n)°; in (I), the ring is folded along the N5⋯C9 line.
The bond distances in (I) (Table 1) provide evidence for some polarization of the molecular–electronic structure. Within the central ring of the fused tricyclic unit, the C3a—C4 and C7—C7a bonds are shorter than the typical values found in delocalized aromatic rings (Allen et al., 1987) and are much shorter than the remaining bonds, which themselves are longer than normal for delocalized aromatic rings. In addition, the C5—N5 bond is shorter than the typical value for bonds of this type involving pyramidal N (mean value = 1.419 Å and lower quartile value = 1.412 Å), and the C6—C8 bond is again much shorter than normal for Car—COR-type bonds (mean value = 1.488 Å and lower quartile value = 1.478 Å). Finally, we note that the C8—O8 bond is also long for its type. These observations, taken together, provide evidence for the importance of the polarized form (Ia) in addition to the conventional aromatic form (I).
The molecules of (I) are linked by a combination of N—H⋯O, C—H⋯O and C—H⋯π(arene) hydrogen bonds (Table 2) into a double-layer structure, whose formation is readily analysed in terms of the simple motifs generated by each of the individual hydrogen bonds. In the first such motif, atom N5 in the molecule at (x, y, z) acts as a hydrogen-bond donor to carbonyl atom O8 in the molecule at (x, − y, + z), so forming a C(6) chain (Bernstein et al., 1995) running parallel to the [001] direction and generated by the c-glide plane at y = (Fig. 2). In addition, aryl atom C12 in the molecule at (x, y, z) acts as a hydrogen-bond donor also to atom O8 but in the molecule at (x, − y, + z), so forming a C(7) chain parallel to [001], this time generated by the c-glide plane at y = (Fig. 3). The combination of these two chain motifs generates a (100) sheet in the form of a (4,4)-net (Batten & Robson, 1998) built from a single type of R43(20) ring (Fig. 4).
Two sheets of this type, related to one another by inversion, pass through each x < 0.41 and 0.59 < x < 0.97; adjacent sheets are linked into pairs by means of a C—H⋯π(arene) hydrogen bond. Atom C2 in the molecule at (x, y, z), which lies in the domain 0.03 < x < 0.41, acts as a hydrogen-bond donor via atom H2A to the C3A–C7A carbocyclic ring in the molecule at (−x, 2 − y, −z), which lies in the domain −0.41 < x < −0.03; the resulting centrosymmetric motif (Fig. 5) serves to link two adjacent sheets into a bilayer, but there are no direction-specific interactions between adjacent bilayers.
one each in the domains 0.03 <It is of interest to compare the supramolecular aggregation of (I) with that in the related compound (II) (Low, Cobo, Ortíz et al., 2004), in which N—H bonds are absent. In (II), the molecules are linked into chains of rings by a combination of C—H⋯O and C—H⋯π(arene) hydrogen bonds, both of which utilize aromatic C—H bonds.
Experimental
For the synthesis of (I), a mixture of 1-(6-amino-1,3-benzodioxol-5-yl)-3-(4-bromophenyl)prop-2-en-1-one (0.2 g, 0.58 mmol), 2-propanol (15 ml) and 4-toluenesulfonic acid (50 mg) was heated under reflux for 2 h. After cooling, the solvent was removed under reduced pressure and the residue was purified by on silica gel using hexane–ethyl acetate (4:1 v/v) as eluant. The product, (I) (75% yield; m.p. 490 K), is a yellow luminescent solid. MS (70 eV): m/e (%): 345/347 (90/85, [M+]), 190 (100, [M—C6H4Br]), 163 (61, [M—CH2 = CHC6H4Br]). Crystals suitable for single-crystal X-ray diffraction were grown from a solution in 2-propanol.
Crystal data
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Data collection
Refinement
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P21/c was uniquely assigned from the All H atoms were located from difference maps and then treated as riding atoms, with C—H distances of 0.95 (aromatic), 0.99 (CH2) or 1.00 Å (aliphatic CH), and an N—H distance of 0.96 Å [Uiso(H) = 1.2Ueq(C,N)]. The atom labelling follows that used for the 1-(6-amino-1,3-benzodioxol-5-yl)-3-arylprop-2-en-1-one precursor compounds (Low, Cobo, Nogueras et al., 2004).
Data collection: COLLECT (Hooft, 1999); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S0108270104024564/sk1778sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270104024564/sk1778Isup2.hkl
For the synthesis of (I) a mixture of 1-(6-amino-1,3-benzodioxol-5-yl)-3-(4-bromophenyl)prop-2-en-1-one (0.2 g, 0.58 mmol), 2-propanol (15 ml) and 4-toluenesulfonic acid (50 mg) was heated under reflux for 2 h. After cooling, the solvent was removed under reduced pressure and the residue was purified by
on silica gel using hexane–ethyl acetate (4:1, v/v) as eluant. The product, (I) (75% yield; m.p. 490 K), is a yellow luminescent solid. MS (70 eV): m/e (%): 345/347 (90/85, [M+]), 190 (100), [M—C6H4Br]), 163 (61), [M—CH2=CHC6H4Br]). Crystals suitable for single-crystal X-ray diffraction were grown from a solution in 2-propanol.Space group P21/c was uniquely assigned from the
All H atoms were located from difference maps, and then treated as riding atoms, with C—H distances of 1.00 (atom C10), 0.95 (aromatic) or 0.99 Å (CH2) and an N—H distance of 0.96 Å, and with Uiso(H) = 1.2Ueq(C,N). The atom-labelling follows that used for the 1-(6-amino-1,3-benzodioxol-5-yl)-3-arylprop-2-en-1-one precursor compounds (Low, Cobo, Nogueras et al., 2004).Data collection: COLLECT (Hooft, 1999); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO (Otwinowski & Minor, 1997) and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).Fig. 1. The S enantiomer of (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. Part of the crystal structure of (I), showing the formation of a C(6) chain along [001] built from N—H···O hydrogen bonds. For clarity, H atoms not involved in the motif shown have been omitted. Atoms marked with an asterisk (*) or a hash (#) are at the symmetry positions (x, 1.5 − y, 0.5 + z) and (x, y, 1 + z), respectively. | |
Fig. 3. Part of the crystal structure of (I), showing the formation of a C(7) chain along [001] built from C—H···O hydrogen bonds. For clarity, H atoms not involved in the motif shown have been omitted. Atoms marked with an asterisk (*) or a hash (#) are at the symmetry positions (x, 0.5 − y, 0.5 + z) and (x, y, 1 + z), respectively. | |
Fig. 4. A stereoview of part of the crystal structure of (I), showing the formation of a (100) sheet of R34(20) rings. For clarity, H atoms not involved in the motifs shown have been omitted. | |
Fig. 5. Part of the crystal structure of (I), showing the formation of a centrosymmetric dimer built from C—H···π(arene) hydrogen bonds. For clarity, H atoms bonded to N atoms or to the C atoms not involved in the motif shown have been omitted. Atoms marked with an asterisk (*) are at the symmetry position (-x, 2 − y, −z). |
C16H12BrNO3 | F(000) = 696 |
Mr = 346.18 | Dx = 1.644 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3166 reflections |
a = 21.2470 (11) Å | θ = 3.6–27.5° |
b = 5.8263 (3) Å | µ = 2.95 mm−1 |
c = 11.4131 (6) Å | T = 120 K |
β = 98.197 (3)° | Plate, yellow |
V = 1398.41 (13) Å3 | 0.18 × 0.18 × 0.04 mm |
Z = 4 |
Nonius KappaCCD diffractometer | 3166 independent reflections |
Radiation source: fine-focus sealed X-ray tube | 2329 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.054 |
ϕ scans, and ω scans with κ offsets | θmax = 27.5°, θmin = 3.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −27→27 |
Tmin = 0.619, Tmax = 0.891 | k = −6→7 |
14573 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0578P)2 + 2.4187P] where P = (Fo2 + 2Fc2)/3 |
3166 reflections | (Δ/σ)max = 0.001 |
190 parameters | Δρmax = 1.29 e Å−3 |
0 restraints | Δρmin = −0.88 e Å−3 |
C16H12BrNO3 | V = 1398.41 (13) Å3 |
Mr = 346.18 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 21.2470 (11) Å | µ = 2.95 mm−1 |
b = 5.8263 (3) Å | T = 120 K |
c = 11.4131 (6) Å | 0.18 × 0.18 × 0.04 mm |
β = 98.197 (3)° |
Nonius KappaCCD diffractometer | 3166 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2329 reflections with I > 2σ(I) |
Tmin = 0.619, Tmax = 0.891 | Rint = 0.054 |
14573 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 1.07 | Δρmax = 1.29 e Å−3 |
3166 reflections | Δρmin = −0.88 e Å−3 |
190 parameters |
x | y | z | Uiso*/Ueq | ||
Br14 | 0.475584 (18) | 0.66273 (8) | 0.63741 (3) | 0.04391 (18) | |
O1 | 0.03463 (12) | 1.0776 (5) | −0.1556 (2) | 0.0330 (6) | |
O3 | 0.04465 (12) | 1.3103 (4) | 0.0106 (2) | 0.0294 (6) | |
O8 | 0.20169 (12) | 0.4244 (4) | −0.0591 (2) | 0.0281 (5) | |
N5 | 0.21863 (13) | 0.8716 (5) | 0.2189 (2) | 0.0245 (6) | |
C2 | 0.01441 (18) | 1.2891 (6) | −0.1107 (3) | 0.0291 (8) | |
C3A | 0.08805 (16) | 1.1376 (6) | 0.0287 (3) | 0.0228 (7) | |
C4 | 0.13109 (16) | 1.0989 (6) | 0.1274 (3) | 0.0237 (7) | |
C5 | 0.17195 (15) | 0.9066 (6) | 0.1249 (3) | 0.0223 (7) | |
C6 | 0.16483 (15) | 0.7576 (6) | 0.0261 (3) | 0.0225 (7) | |
C7 | 0.11890 (16) | 0.8058 (6) | −0.0744 (3) | 0.0255 (7) | |
C7A | 0.08238 (16) | 0.9957 (6) | −0.0708 (3) | 0.0250 (7) | |
C8 | 0.20693 (16) | 0.5629 (6) | 0.0243 (3) | 0.0232 (7) | |
C9 | 0.25972 (17) | 0.5399 (6) | 0.1262 (3) | 0.0275 (7) | |
C10 | 0.24398 (17) | 0.6416 (6) | 0.2419 (3) | 0.0268 (7) | |
C11 | 0.30174 (16) | 0.6497 (6) | 0.3375 (3) | 0.0258 (7) | |
C12 | 0.31097 (18) | 0.4750 (7) | 0.4206 (3) | 0.0331 (8) | |
C13 | 0.36354 (18) | 0.4776 (7) | 0.5091 (3) | 0.0343 (8) | |
C14 | 0.40543 (17) | 0.6562 (7) | 0.5139 (3) | 0.0294 (8) | |
C15 | 0.39783 (18) | 0.8316 (7) | 0.4331 (3) | 0.0332 (8) | |
C16 | 0.34613 (18) | 0.8277 (6) | 0.3441 (3) | 0.0311 (8) | |
H2A | −0.0324 | 1.2904 | −0.1142 | 0.035* | |
H2B | 0.0268 | 1.4190 | −0.1584 | 0.035* | |
H4 | 0.1336 | 1.1962 | 0.1947 | 0.028* | |
H5 | 0.2121 | 0.9569 | 0.2881 | 0.029* | |
H7 | 0.1140 | 0.7081 | −0.1418 | 0.031* | |
H9A | 0.2981 | 0.6171 | 0.1052 | 0.033* | |
H9B | 0.2700 | 0.3752 | 0.1386 | 0.033* | |
H10 | 0.2106 | 0.5444 | 0.2708 | 0.032* | |
H12 | 0.2813 | 0.3525 | 0.4173 | 0.040* | |
H13 | 0.3701 | 0.3566 | 0.5653 | 0.041* | |
H15 | 0.4276 | 0.9541 | 0.4380 | 0.040* | |
H16 | 0.3408 | 0.9474 | 0.2870 | 0.037* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br14 | 0.0303 (2) | 0.0694 (3) | 0.0291 (2) | −0.0001 (2) | −0.00602 (16) | 0.00020 (18) |
O1 | 0.0359 (14) | 0.0393 (15) | 0.0202 (12) | 0.0087 (12) | −0.0083 (10) | −0.0031 (10) |
O3 | 0.0334 (14) | 0.0325 (14) | 0.0200 (12) | 0.0081 (11) | −0.0039 (10) | −0.0005 (9) |
O8 | 0.0378 (14) | 0.0283 (13) | 0.0188 (12) | 0.0023 (11) | 0.0063 (10) | 0.0000 (9) |
N5 | 0.0249 (15) | 0.0318 (16) | 0.0159 (13) | 0.0030 (12) | −0.0003 (11) | −0.0014 (11) |
C2 | 0.0303 (19) | 0.030 (2) | 0.0251 (17) | 0.0019 (15) | −0.0030 (14) | 0.0011 (14) |
C3A | 0.0236 (16) | 0.0267 (17) | 0.0188 (16) | −0.0007 (14) | 0.0049 (13) | −0.0003 (13) |
C4 | 0.0269 (17) | 0.0268 (17) | 0.0177 (16) | −0.0021 (14) | 0.0041 (13) | 0.0003 (12) |
C5 | 0.0205 (16) | 0.0291 (18) | 0.0174 (16) | −0.0037 (13) | 0.0036 (12) | 0.0014 (12) |
C6 | 0.0207 (16) | 0.0289 (17) | 0.0180 (15) | −0.0028 (14) | 0.0031 (13) | −0.0003 (13) |
C7 | 0.0243 (17) | 0.0322 (19) | 0.0201 (16) | −0.0027 (14) | 0.0040 (13) | −0.0034 (13) |
C7A | 0.0242 (16) | 0.0317 (19) | 0.0185 (16) | −0.0017 (14) | 0.0006 (13) | 0.0012 (13) |
C8 | 0.0239 (17) | 0.0287 (18) | 0.0180 (16) | −0.0039 (14) | 0.0065 (13) | 0.0013 (13) |
C9 | 0.0296 (18) | 0.032 (2) | 0.0215 (17) | 0.0022 (15) | 0.0060 (14) | 0.0020 (14) |
C10 | 0.0250 (17) | 0.0304 (19) | 0.0244 (17) | 0.0014 (15) | 0.0013 (14) | 0.0030 (14) |
C11 | 0.0233 (17) | 0.0334 (19) | 0.0205 (16) | 0.0032 (15) | 0.0026 (13) | −0.0038 (13) |
C12 | 0.034 (2) | 0.0290 (19) | 0.035 (2) | −0.0031 (16) | −0.0010 (16) | −0.0001 (15) |
C13 | 0.037 (2) | 0.034 (2) | 0.0298 (19) | 0.0034 (17) | −0.0038 (15) | 0.0076 (15) |
C14 | 0.0220 (17) | 0.042 (2) | 0.0241 (18) | 0.0026 (16) | 0.0019 (14) | −0.0015 (15) |
C15 | 0.0260 (18) | 0.038 (2) | 0.035 (2) | −0.0101 (16) | 0.0033 (15) | 0.0000 (16) |
C16 | 0.0319 (19) | 0.033 (2) | 0.0271 (18) | −0.0002 (16) | 0.0008 (15) | 0.0069 (15) |
O1—C7A | 1.383 (4) | C7—H7 | 0.95 |
O1—C2 | 1.424 (5) | C8—C9 | 1.502 (5) |
C2—O3 | 1.446 (4) | C9—C10 | 1.528 (5) |
C2—H2A | 0.99 | C9—H9A | 0.99 |
C2—H2B | 0.99 | C9—H9B | 0.99 |
O3—C3A | 1.360 (4) | C10—C11 | 1.522 (5) |
C3A—C4 | 1.365 (5) | C10—H10 | 1.00 |
C4—C5 | 1.420 (5) | C11—C12 | 1.386 (5) |
C5—C6 | 1.414 (5) | C11—C16 | 1.397 (5) |
C6—C7 | 1.424 (5) | C12—C13 | 1.395 (5) |
C7—C7A | 1.356 (5) | C12—H12 | 0.95 |
C7A—C3A | 1.396 (5) | C13—C14 | 1.366 (5) |
C5—N5 | 1.368 (4) | C13—H13 | 0.95 |
C6—C8 | 1.447 (5) | C14—C15 | 1.370 (5) |
C8—O8 | 1.241 (4) | C14—Br14 | 1.901 (3) |
C4—H4 | 0.95 | C15—C16 | 1.386 (5) |
N5—C10 | 1.454 (4) | C15—H15 | 0.95 |
N5—H5 | 0.96 | C16—H16 | 0.95 |
C7A—O1—C2 | 106.0 (3) | C6—C8—C9 | 117.0 (3) |
O1—C2—O3 | 107.6 (3) | C8—C9—C10 | 113.8 (3) |
O1—C2—H2A | 110.2 | C8—C9—H9A | 108.8 |
O3—C2—H2A | 110.2 | C10—C9—H9A | 108.8 |
O1—C2—H2B | 110.2 | C8—C9—H9B | 108.8 |
O3—C2—H2B | 110.2 | C10—C9—H9B | 108.8 |
H2A—C2—H2B | 108.5 | H9A—C9—H9B | 107.7 |
C3A—O3—C2 | 106.3 (2) | N5—C10—C11 | 109.9 (3) |
O3—C3A—C4 | 127.4 (3) | N5—C10—C9 | 108.8 (3) |
O3—C3A—C7A | 109.7 (3) | C11—C10—C9 | 112.2 (3) |
C4—C3A—C7A | 122.9 (3) | N5—C10—H10 | 108.6 |
C3A—C4—C5 | 117.0 (3) | C11—C10—H10 | 108.6 |
C3A—C4—H4 | 121.5 | C9—C10—H10 | 108.6 |
C5—C4—H4 | 121.5 | C12—C11—C16 | 118.7 (3) |
N5—C5—C6 | 121.1 (3) | C12—C11—C10 | 119.3 (3) |
N5—C5—C4 | 118.6 (3) | C16—C11—C10 | 122.1 (3) |
C6—C5—C4 | 120.3 (3) | C11—C12—C13 | 120.5 (3) |
C5—N5—C10 | 119.2 (3) | C11—C12—H12 | 119.7 |
C5—N5—H5 | 113.2 | C13—C12—H12 | 119.7 |
C10—N5—H5 | 114.9 | C14—C13—C12 | 119.2 (3) |
C5—C6—C7 | 120.3 (3) | C14—C13—H13 | 120.4 |
C5—C6—C8 | 119.8 (3) | C12—C13—H13 | 120.4 |
C7—C6—C8 | 119.8 (3) | C13—C14—C15 | 121.9 (3) |
C7A—C7—C6 | 117.8 (3) | C13—C14—Br14 | 118.9 (3) |
C7A—C7—H7 | 121.1 | C15—C14—Br14 | 119.3 (3) |
C6—C7—H7 | 121.1 | C14—C15—C16 | 119.1 (3) |
C7—C7A—O1 | 128.8 (3) | C14—C15—H15 | 120.5 |
C7—C7A—C3A | 121.7 (3) | C16—C15—H15 | 120.5 |
O1—C7A—C3A | 109.5 (3) | C15—C16—C11 | 120.7 (3) |
O8—C8—C6 | 122.2 (3) | C15—C16—H16 | 119.7 |
O8—C8—C9 | 120.8 (3) | C11—C16—H16 | 119.7 |
C7A—O1—C2—O3 | −8.9 (4) | C5—C6—C8—O8 | 178.4 (3) |
O1—C2—O3—C3A | 9.1 (4) | C7—C6—C8—O8 | −5.3 (5) |
C2—O3—C3A—C4 | 174.9 (3) | C5—C6—C8—C9 | −4.3 (5) |
C2—O3—C3A—C7A | −5.8 (4) | C7—C6—C8—C9 | 172.1 (3) |
O3—C3A—C4—C5 | −179.7 (3) | O8—C8—C9—C10 | −153.3 (3) |
C7A—C3A—C4—C5 | 1.2 (5) | C6—C8—C9—C10 | 29.3 (4) |
C3A—C4—C5—N5 | 175.5 (3) | C5—N5—C10—C11 | 171.2 (3) |
C3A—C4—C5—C6 | −3.4 (5) | C5—N5—C10—C9 | 48.0 (4) |
C6—C5—N5—C10 | −24.8 (5) | C8—C9—C10—N5 | −49.0 (4) |
C4—C5—N5—C10 | 156.3 (3) | C8—C9—C10—C11 | −170.9 (3) |
N5—C5—C6—C7 | −175.6 (3) | N5—C10—C11—C12 | 142.0 (3) |
C4—C5—C6—C7 | 3.3 (5) | C9—C10—C11—C12 | −96.8 (4) |
N5—C5—C6—C8 | 0.8 (5) | N5—C10—C11—C16 | −38.2 (4) |
C4—C5—C6—C8 | 179.7 (3) | C9—C10—C11—C16 | 83.0 (4) |
C5—C6—C7—C7A | −0.8 (5) | C16—C11—C12—C13 | 0.1 (5) |
C8—C6—C7—C7A | −177.1 (3) | C10—C11—C12—C13 | 179.9 (3) |
C6—C7—C7A—O1 | −179.3 (3) | C11—C12—C13—C14 | 0.9 (6) |
C6—C7—C7A—C3A | −1.5 (5) | C12—C13—C14—C15 | −1.0 (6) |
C2—O1—C7A—C7 | −176.5 (4) | C12—C13—C14—Br14 | 178.2 (3) |
C2—O1—C7A—C3A | 5.4 (4) | C13—C14—C15—C16 | 0.1 (6) |
O3—C3A—C7A—C7 | −177.9 (3) | Br14—C14—C15—C16 | −179.1 (3) |
C4—C3A—C7A—C7 | 1.4 (5) | C14—C15—C16—C11 | 0.9 (6) |
O3—C3A—C7A—O1 | 0.3 (4) | C12—C11—C16—C15 | −1.0 (5) |
C4—C3A—C7A—O1 | 179.6 (3) | C10—C11—C16—C15 | 179.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5···O8i | 0.96 | 1.92 | 2.867 (3) | 170 |
C12—H12···O8ii | 0.95 | 2.38 | 3.319 (5) | 170 |
C2—H2A···Cg1iii | 0.99 | 2.74 | 3.550 (4) | 140 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, −y+1/2, z+1/2; (iii) −x, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | C16H12BrNO3 |
Mr | 346.18 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 120 |
a, b, c (Å) | 21.2470 (11), 5.8263 (3), 11.4131 (6) |
β (°) | 98.197 (3) |
V (Å3) | 1398.41 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.95 |
Crystal size (mm) | 0.18 × 0.18 × 0.04 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.619, 0.891 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14573, 3166, 2329 |
Rint | 0.054 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.131, 1.07 |
No. of reflections | 3166 |
No. of parameters | 190 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.29, −0.88 |
Computer programs: COLLECT (Hooft, 1999), DENZO (Otwinowski & Minor, 1997) and COLLECT, OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
C3A—C4 | 1.365 (5) | C7A—C3A | 1.396 (5) |
C4—C5 | 1.420 (5) | C5—N5 | 1.368 (4) |
C5—C6 | 1.414 (5) | C6—C8 | 1.447 (5) |
C6—C7 | 1.424 (5) | C8—O8 | 1.241 (4) |
C7—C7A | 1.356 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5···O8i | 0.96 | 1.92 | 2.867 (3) | 170 |
C12—H12···O8ii | 0.95 | 2.38 | 3.319 (5) | 170 |
C2—H2A···Cg1iii | 0.99 | 2.74 | 3.550 (4) | 140 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, −y+1/2, z+1/2; (iii) −x, −y+2, −z. |
Acknowledgements
X-Ray data were collected at the EPSRC X-ray Crystallographic Service, University of Southampton, England; the authors thank the staff for all their help and advice. JNL thanks NCR Self-Service, Dundee, for grants that have provided computing facilities for this work. RA thanks the Fundación para la Promoción de la Investigación y la Tecnología (Banco de la República) and the Universidad del Valle for financial support. PC thanks COLCIENCIAS for a doctoral fellowship. JC thanks the Junta de Andalucía and the Universidad de Jaén for financial support.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Batten, S. R. & Robson, R. (1998). Angew. Chem. Int. Ed. 37, 1460–1494. Web of Science CrossRef Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Donnelly, J. A. & Farrell, D. F. (1990). Tetrahedron, 46, 885–894. CrossRef CAS Web of Science Google Scholar
Evans, D. G. & Boeyens, J. C. A. (1989). Acta Cryst. B45, 581–590. CrossRef CAS Web of Science IUCr Journals Google Scholar
Ferguson, G. (1999). PRPKAPPA. University of Guelph, Canada. Google Scholar
Hooft, R. W. W. (1999). COLLECT. Nonius BV, Delft, The Netherlands. Google Scholar
Kurasawa, Y., Tsuruoka, A., Rikiishi, N., Fujiwara, N., Okamoto, Y. & Kim, H. S. (2000). J. Heterocycl. Chem. 37, 791–798. CrossRef CAS Google Scholar
Low, J. N., Cobo, J., Nogueras, M., Cuervo, P., Abonia, R. & Glidewell, C. (2004). Acta Cryst. C60, o744–o750. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Low, J. N., Cobo, J., Ortíz, A., Cuervo, P., Abonia, R. & Glidewell, C. (2004). Acta Cryst. E60, o1057–o1059. Web of Science CSD CrossRef IUCr Journals Google Scholar
McArdle, P. (2003). OSCAIL for Windows. Version 10. Crystallography Centre, Chemistry Department, NUI Galway, Ireland. Google Scholar
Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press. Google Scholar
Prager, R. & Thredgold, M. (1968). Aust. J. Chem. 21, 229–241. CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (1997). SHELXS97 and SHELXL97. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2003). SADABS. Version 2.10. University of Göttingen, Germany. Google Scholar
Spek, A. L. (2003). J. Appl. Cryst. 36, 7–13. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zhang, S.-X., Feng, J., Kuo, S.-C., Brossi, A., Hamel, E., Tropsha, A. & Li, K.-H. (2000). J. Med. Chem. 43, 167–176. Web of Science CrossRef PubMed CAS Google Scholar
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As part of a synthetic programme targeted on compounds displaying important biological properties, we have recently focused on hydroquinoline derivatives because the dioxolotetrahydroquinolin-8-one structure, for example, has been found in compounds used as antimitotic and antitumour agents (Prager & Thredgold, 1968; Donnelly & Farrell, 1990; Kurasawa et al., 2000; Zhang et al., 2000). We report here the molecular and supramolecular structure of 6-(4-bromo-phenyl)-6,7-dihydro-5H-[1,3]dioxolo[4,5-g]quinolin-8-one, (I), which has been synthesized by 6-endo intramolecular cyclization from the corresponding 2-aminochalcone; the structures of a range of these precursors have recently been reported (Low, Cobo, Nogueras et al., 2004).
The molecule of (I) contains a stereogenic centre at atom C10 (Fig. 1); the reference molecule was selected as one having an S configuration, but the centrosymmetric space group accommodates equal numbers of R and S enantiomers. In addition to the two planar carbocyclic rings, the molecule contains two heterocyclic rings, both of which are non-planar. The five-membered ring is folded across the O···O line, and for the atom sequence O1—C2—O3—C3A—C7A, the ring-puckering parameter ϕ2 (Cremer & Pople, 1975) has a value of 37 (2)°, consistent with the envelope conformation (Evans & Boeyens, 1989). For the nitrogen-containing ring, the parameters corresponding to the atom sequence N5—C5—C6—C8—C9—C10 are θ = 52.3 (5)° and ϕ = 291.5 (6), corresponding closely to an envelope conformation, where the idealized values are θ = 54.7° and ϕ = (60n)°; in (I), the ring is folded along the N5···C9 line.
The bond distances in (I) (Table 1) provide evidence for some polarization of the molecular–electronic structure. Within the central ring of the fused tricyclic unit, the C3A—C4 and C7—C7A bonds are shorter than the typical values found in delocalized aromatic rings (Allen et al., 1987) and are much shorter than the remaining bonds, which themselves are longer than normal for delocalized aromatic rings. In addition, the C5—N5 bond is shorter than the typical value for bonds of this type involving pyramidal N (mean value 1.419 Å; lower quartile value 1.412 Å), and the C6—C8 bond is again much shorter than normal for Car—COR-type bonds (mean value 1.488 Å, lower quartile value 1.478 Å). Finally, we note that the C8—O8 bond is also long for its type. These observations, taken together, provide evidence for the importance of the polarized form (Ia) in addition to the conventional aromatic form (I).
The molecules of (I) are linked by a combination of N—H···O, C—H···O and C—H···π(arene) hydrogen bonds (Table 2) into a double-layer structure, whose formation is readily analyzed in terms of the simple motifs generated by each of the individual hydrogen bonds. In the first such motif, atom N5 in the molecule at (x, y, z) acts as a hydrogen-bond donor to carbonyl atom O8 in the molecule at (x, 1.5 − y, 0.5 + z), so forming a C(6) chain (Bernstein et al., 1995), running parallel to the [001] direction and generated by the c-glide plane at y = 0.75 (Fig. 2). In addition, aryl atom C12 in the molecule at (x, y, z) acts as a hydrogen-bond donor also to atom O8 but in the molecule at (x, 0.5 − y, 0.5 + z), so forming a C(7) chain parallel to [001], this time generated by the c-glide plane at y = 0.25 (Fig. 3). The combination of these two chain motifs generates a (100) sheet in the form of a (4,4)-net (Batten & Robson, 1998) built from a single type of R34(20) ring (Fig. 4).
Two sheets of this type, related to one another by inversion, pass through each unit cell, one each in the domains 0.03 < x < 0.41 and 0.59 < x < 0.97; adjacent sheets are linked into pairs by means of a C—H···π(arene) hydrogen bond. Atom C2 in the molecule at (x, y, z), which lies in the domain 0.03 < x < 0.41, acts as a hydrogen-bond donor via atom H2A to the C3A–C7A carbocyclic ring in the molecule at (-x, 2 − y, −z), which lies in the domain −0.41 < x < −0.03; the resulting centrosymmetric motif (Fig. 5) serves to link two adjacent sheets into a bilayer, but there are no direction-specific interactions between adjacent bilayers.
It is of interest to compare the supramolecular aggregation of (I) with that in the related compound (II) (Low, Cobo, Ortíz et al., 2004), in which N—H bonds are absent. In (II), the molecules are linked into chains of rings by a combination of C—H···O and C—H···π(arene) hydrogen bonds, both of which utilize aromatic C—H bonds. Cg1 is the centroid of the C3A/C4–C7/C7A ring.