organic compounds
3,3-Difluoro-5-nitro-1H-indol-2(3H)-one: sheets of R22(8) and R46(34) rings built from three-centre N—H⋯(O)2 hydrogen bonds
aSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland, bDepartment of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen AB24 3UE, Scotland, and cInstituto de Química, Departamento de Química Inorgânica, Universidade Federal do Rio de Janeiro, 21945-970 Rio de Janeiro, RJ, Brazil
*Correspondence e-mail: cg@st-andrews.ac.uk
The title compound, C8H4F2N2O3, crystallizes with Z′ = 2 in the P21/c. The molecules are linked into sheets of (8) and (34) rings by two independent asymmetric three-centre N—H⋯(O)2 hydrogen bonds [H⋯O = 2.15/2.57 Å in one system and 2.23/2.46 Å in the other; N⋯O = 2.8959 (17)/3.2972 (16) and 2.9561 (16)/3.1774 (15) Å; N—H⋯O = 142/140 and 140/139°; O⋯H⋯O = 77 and 79°].
Comment
Indoline-2,3-diones (isatins) are very versatile synthetic substrates, useful both in the synthesis of et al., 2001). 3,3-Difluorooxindolones, prepared from indoline-2,3-diones by reaction with (diethylamino)sulfur trifluoride (Torres et al., 1999), have been shown to be particularly valuable precursors of pharmaceutically active materials (Boechat & Pinto, 2000). We report here the molecular and supramolecular structure of the title compound, (I), a typical simply substituted 3,3-difluorooxindolone.
and as raw materials for drugs (da SilvaCompound (I) (Fig. 1) crystallizes in P21/c with Z′ = 2. The bond distances and angles within the two independent molecules are very similar (Table 1), but there are a number of unusual values consistently observed for the two molecules. The distances Cn2—Cn3 (n = 1 or 2) are long for their type, where the mean value (Allen et al., 1987) is 1.511 Å and the upper-quartile value 1.521 Å. In addition, there are indications of weak bond fixation within the aryl rings. Likewise, the interbond angles at both Cn2 and Cn3 show some unexpected values. In particular, the opposed pair of angles Fn31—Cn3—Fn32 and Cn2—Cn3—Cn3A (n = 1 or 2) are all significantly less than the idealized tetrahedral values; normally, the distortions in opposed pairs of angles are such that one angle is significantly larger and one is significantly smaller than the idealized value. While the bicyclic skeletons are essentially planar, the nitro groups are both twisted away from these planes. The nitro groups containing atoms N15 and N25 make dihedral angles with the adjacent rings of 13.2 (2) and 15.6 (2)°, respectively. The sense of these rotations, as shown by the key torsion angles (Table 1), indicates approximate twofold rotational symmetry for the selected asymmetric unit.
The two independent molecules of (I) are linked by paired N—H⋯O hydrogen bonds with carbonyl acceptors (Table 2), the dimensions of which differ sufficiently to preclude the possibility of any additional symmetry. These two interactions are each, in fact, one component of a planar but asymmetric three-centre N—H⋯(O)2 system, in each of which the second acceptor is a nitro O atom, and these longer, and weaker, components link the bimolecular aggregates (Fig. 1) into continuous sheets.
Atom N11 in the type 1 molecule (n = 1) at (x, y, z) acts as hydrogen-bond donor to nitro atom O252 in the type 2 molecule (n = 2) at (1 − x, y − , − z), so forming a C 12(9)[(8)] chain of rings (Bernstein et al., 1995) running parallel to the [010] direction and generated by the 21 screw axis along (, y, ) (Fig. 2). Similarly, atom N21 at (x, y, z) acts as hydrogen-bond donor to O152 at (−x, + y, − z), so producing a second C 12(9)[(8)] chain of rings, this time along (0, y, ) (Fig. 3). The combination of these two chain motifs generates a (101) sheet containing (8) and (34) rings (Fig. 4), in which each bimolecular aggregate is linked to four others. Hence, if these aggregates are regarded as the nodes of the resulting net, this is of the (4,4)-type (Batten & Robson, 1998). Two (101) sheets, related to one another by inversion, pass through each unit cell.
There are neither C—H⋯π(arene) hydrogen bonds nor aromatic π–π stacking interactions between the components of adjacent sheets. The only significant C—H⋯O hydrogen bonds (Table 2) all lie within a single (101) sheet. There are some short F⋯N contacts involving nitro N atoms between molecules in adjacent sheets, namely C15—N15⋯F232i, with N15⋯F232i = 2.915 (2) Å and C15—N15⋯F232i = 109.6 (2)° [symmetry code: (i) −x, 1 − y, 1 − z], and C25—H25⋯F232ii, with N25⋯F231ii = 2.947 (2) Å and C25—N25⋯F231ii = 91.2 (2)° [symmetry code: (ii) x, − y, z − ], but the status of such dipolar contacts, in terms of their possible structural significance, has not yet been established.
Experimental
The title compound was obtained according to the procedure published by Torres et al. (1999) [m.p. 459–460 K; literature m.p. 461–462 K (Torres et al., 1999)]. Crystals of (I) suitable for single-crystal X-ray diffraction were obtained by slow evaporation of a solution in acetonitrile.
Crystal data
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Refinement
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The P21/c was uniquely assigned from the All H atoms were located from difference maps and subsequently treated as riding atoms, with C—H distances of 0.95 Å and N—H distances of 0.88 Å, and with Uiso(H) = 1.2Ueq(C,N).
Data collection: COLLECT (Hooft, 1999); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S0108270104031026/sk1799sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270104031026/sk1799Isup2.hkl
The title compound was obtained using the procedure published by Torres et al. (1999) [m.p. 459–460 K; literature m.p. 461–462 K (Torres et al., 1999)]. Crystals of (I) suitable for single-crystal X-ray diffraction were obtained by slow evaporation of a solution in acetonitrile.
The
P21/c was uniquely assigned from the All H atoms were located from difference maps and subsequently treated as riding atoms, with C—H distances of 0.95 Å and N—H distances of 0.88 Å, and with Uiso(H) = 1.2 Ueq(C,N).Data collection: COLLECT (Hooft, 1999); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle , 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).Fig. 1. The two independent molecules in compound (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level and H atoms are shown as small spheres of arbitrary radii. | |
Fig. 2. A stereoview of part of the crystal structure of (I), showing the formation of a chain of rings along (1/2, y, 1/4). For the sake of clarity, H atoms bonded to C atoms have been omitted. | |
Fig. 3. A stereoview of part of the crystal structure of (I), showing the formation of a chain of rings along (0, y, 3/4). For the sake of clarity, H atoms bonded to C atoms have been omitted. | |
Fig. 4. A stereoview of part of the crystal structure of (I), showing the formation of a (101) sheet of R22(8) and R46(34) rings. For the sake of clarity, H atoms bonded to C atoms have been omitted. |
C8H4F2N2O3 | F(000) = 864 |
Mr = 214.13 | Dx = 1.797 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3611 reflections |
a = 11.0529 (4) Å | θ = 3.1–27.5° |
b = 15.4381 (6) Å | µ = 0.17 mm−1 |
c = 9.2768 (4) Å | T = 120 K |
β = 90.951 (2)° | Block, yellow |
V = 1582.74 (11) Å3 | 0.04 × 0.04 × 0.03 mm |
Z = 8 |
Bruker-Nonius KappaCCD diffractometer | 3611 independent reflections |
Radiation source: Bruker-Nonius FR591 rotating anode | 2980 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
ϕ and ω scans | h = −11→14 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −19→20 |
Tmin = 0.980, Tmax = 0.995 | l = −12→12 |
18600 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0405P)2 + 0.7598P] where P = (Fo2 + 2Fc2)/3 |
3611 reflections | (Δ/σ)max = 0.001 |
271 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
C8H4F2N2O3 | V = 1582.74 (11) Å3 |
Mr = 214.13 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.0529 (4) Å | µ = 0.17 mm−1 |
b = 15.4381 (6) Å | T = 120 K |
c = 9.2768 (4) Å | 0.04 × 0.04 × 0.03 mm |
β = 90.951 (2)° |
Bruker-Nonius KappaCCD diffractometer | 3611 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2980 reflections with I > 2σ(I) |
Tmin = 0.980, Tmax = 0.995 | Rint = 0.033 |
18600 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.31 e Å−3 |
3611 reflections | Δρmin = −0.24 e Å−3 |
271 parameters |
x | y | z | Uiso*/Ueq | ||
F131 | −0.04435 (7) | 0.75196 (5) | 0.68875 (9) | 0.0225 (2) | |
F132 | 0.06701 (8) | 0.74983 (5) | 0.88442 (9) | 0.0231 (2) | |
O12 | 0.22009 (9) | 0.73174 (7) | 0.63905 (11) | 0.0235 (2) | |
O151 | −0.29573 (10) | 0.53040 (7) | 1.05503 (12) | 0.0301 (3) | |
O152 | −0.23822 (9) | 0.39721 (6) | 1.02704 (11) | 0.0239 (2) | |
N11 | 0.13652 (11) | 0.59334 (8) | 0.64370 (13) | 0.0212 (3) | |
N15 | −0.23069 (10) | 0.47540 (8) | 0.99992 (13) | 0.0194 (3) | |
C12 | 0.14473 (13) | 0.67972 (9) | 0.67466 (15) | 0.0191 (3) | |
C13 | 0.03345 (13) | 0.70129 (9) | 0.76904 (15) | 0.0180 (3) | |
C13A | −0.01902 (12) | 0.61490 (9) | 0.80219 (15) | 0.0172 (3) | |
C14 | −0.11111 (12) | 0.59184 (9) | 0.89226 (15) | 0.0175 (3) | |
C15 | −0.13848 (12) | 0.50402 (9) | 0.89886 (14) | 0.0175 (3) | |
C16 | −0.07966 (13) | 0.44197 (9) | 0.81771 (15) | 0.0209 (3) | |
C17 | 0.01354 (13) | 0.46609 (9) | 0.72587 (16) | 0.0217 (3) | |
C17A | 0.04350 (12) | 0.55325 (9) | 0.72094 (15) | 0.0185 (3) | |
F231 | 0.57606 (8) | 0.56843 (5) | 0.34072 (9) | 0.0236 (2) | |
F232 | 0.44907 (8) | 0.57528 (5) | 0.15914 (9) | 0.0239 (2) | |
O22 | 0.32454 (11) | 0.58867 (7) | 0.43013 (13) | 0.0324 (3) | |
O251 | 0.78901 (9) | 0.79173 (7) | −0.05958 (11) | 0.0239 (2) | |
O252 | 0.79517 (9) | 0.91845 (6) | 0.04203 (11) | 0.0236 (2) | |
N21 | 0.39276 (11) | 0.72992 (7) | 0.39912 (13) | 0.0194 (3) | |
N25 | 0.75454 (10) | 0.84455 (7) | 0.03053 (12) | 0.0175 (2) | |
C22 | 0.39055 (13) | 0.64264 (9) | 0.37930 (15) | 0.0210 (3) | |
C23 | 0.49404 (13) | 0.62130 (9) | 0.27326 (15) | 0.0185 (3) | |
C23A | 0.54302 (12) | 0.70766 (9) | 0.23409 (15) | 0.0170 (3) | |
C24 | 0.63337 (12) | 0.72974 (9) | 0.14063 (14) | 0.0167 (3) | |
C25 | 0.65924 (12) | 0.81772 (9) | 0.12913 (14) | 0.0165 (3) | |
C26 | 0.59836 (13) | 0.88096 (9) | 0.20610 (15) | 0.0198 (3) | |
C27 | 0.50592 (13) | 0.85779 (9) | 0.29936 (16) | 0.0216 (3) | |
C27A | 0.48003 (12) | 0.77018 (9) | 0.31233 (15) | 0.0174 (3) | |
H11 | 0.1836 | 0.5662 | 0.5829 | 0.025* | |
H14 | −0.1537 | 0.6336 | 0.9470 | 0.021* | |
H16 | −0.1028 | 0.3829 | 0.8245 | 0.025* | |
H17 | 0.0546 | 0.4245 | 0.6692 | 0.026* | |
H21 | 0.3455 | 0.7579 | 0.4588 | 0.023* | |
H24 | 0.6757 | 0.6874 | 0.0870 | 0.020* | |
H26 | 0.6197 | 0.9402 | 0.1952 | 0.024* | |
H27 | 0.4626 | 0.9002 | 0.3517 | 0.026* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F131 | 0.0225 (4) | 0.0205 (4) | 0.0244 (5) | 0.0020 (3) | 0.0020 (3) | 0.0053 (3) |
F132 | 0.0289 (5) | 0.0210 (4) | 0.0195 (4) | −0.0045 (4) | 0.0034 (3) | −0.0041 (3) |
O12 | 0.0216 (5) | 0.0255 (5) | 0.0237 (6) | −0.0041 (4) | 0.0053 (4) | 0.0027 (4) |
O151 | 0.0303 (6) | 0.0212 (5) | 0.0395 (7) | 0.0025 (5) | 0.0195 (5) | −0.0032 (5) |
O152 | 0.0254 (5) | 0.0165 (5) | 0.0301 (6) | −0.0018 (4) | 0.0057 (4) | 0.0039 (4) |
N11 | 0.0219 (6) | 0.0209 (6) | 0.0210 (6) | 0.0002 (5) | 0.0092 (5) | −0.0013 (5) |
N15 | 0.0188 (6) | 0.0181 (6) | 0.0215 (6) | −0.0012 (5) | 0.0040 (5) | 0.0003 (5) |
C12 | 0.0196 (7) | 0.0220 (7) | 0.0156 (6) | 0.0006 (6) | 0.0008 (5) | 0.0030 (5) |
C13 | 0.0202 (7) | 0.0171 (7) | 0.0167 (7) | −0.0002 (5) | 0.0013 (5) | −0.0006 (5) |
C13A | 0.0193 (7) | 0.0156 (6) | 0.0168 (7) | 0.0007 (5) | 0.0012 (5) | 0.0009 (5) |
C14 | 0.0180 (7) | 0.0167 (6) | 0.0180 (6) | 0.0021 (5) | 0.0042 (5) | −0.0009 (5) |
C15 | 0.0155 (6) | 0.0187 (7) | 0.0184 (7) | 0.0000 (5) | 0.0038 (5) | 0.0007 (5) |
C16 | 0.0222 (7) | 0.0169 (7) | 0.0236 (7) | 0.0005 (6) | 0.0047 (6) | −0.0011 (5) |
C17 | 0.0236 (7) | 0.0187 (7) | 0.0230 (7) | 0.0022 (6) | 0.0075 (6) | −0.0032 (6) |
C17A | 0.0187 (7) | 0.0205 (7) | 0.0165 (7) | 0.0001 (6) | 0.0039 (5) | 0.0005 (5) |
F231 | 0.0249 (4) | 0.0188 (4) | 0.0271 (5) | 0.0032 (3) | 0.0030 (3) | 0.0041 (3) |
F232 | 0.0270 (5) | 0.0226 (4) | 0.0222 (4) | −0.0065 (4) | 0.0029 (3) | −0.0048 (3) |
O22 | 0.0337 (6) | 0.0247 (6) | 0.0395 (7) | −0.0076 (5) | 0.0199 (5) | −0.0020 (5) |
O251 | 0.0259 (5) | 0.0242 (5) | 0.0219 (5) | 0.0021 (4) | 0.0100 (4) | −0.0019 (4) |
O252 | 0.0243 (5) | 0.0196 (5) | 0.0272 (6) | −0.0056 (4) | 0.0059 (4) | 0.0015 (4) |
N21 | 0.0191 (6) | 0.0184 (6) | 0.0208 (6) | 0.0001 (5) | 0.0084 (5) | −0.0010 (5) |
N25 | 0.0165 (6) | 0.0184 (6) | 0.0177 (6) | 0.0015 (5) | 0.0024 (4) | 0.0019 (4) |
C22 | 0.0204 (7) | 0.0210 (7) | 0.0217 (7) | −0.0015 (6) | 0.0053 (5) | −0.0016 (6) |
C23 | 0.0192 (7) | 0.0173 (7) | 0.0190 (7) | −0.0012 (5) | 0.0027 (5) | −0.0009 (5) |
C23A | 0.0177 (6) | 0.0162 (7) | 0.0172 (6) | −0.0002 (5) | 0.0014 (5) | 0.0000 (5) |
C24 | 0.0162 (6) | 0.0171 (7) | 0.0169 (7) | 0.0018 (5) | 0.0025 (5) | −0.0019 (5) |
C25 | 0.0151 (6) | 0.0181 (7) | 0.0164 (6) | −0.0006 (5) | 0.0031 (5) | 0.0018 (5) |
C26 | 0.0209 (7) | 0.0149 (7) | 0.0236 (7) | 0.0000 (5) | 0.0037 (5) | 0.0000 (5) |
C27 | 0.0223 (7) | 0.0183 (7) | 0.0243 (7) | 0.0022 (6) | 0.0065 (6) | −0.0021 (6) |
C27A | 0.0162 (6) | 0.0191 (7) | 0.0170 (7) | 0.0002 (5) | 0.0034 (5) | 0.0006 (5) |
N11—C12 | 1.3668 (19) | N21—C22 | 1.3602 (18) |
C12—C13 | 1.5576 (19) | C22—C23 | 1.5562 (19) |
C13—C13A | 1.4886 (19) | C23—C23A | 1.4863 (19) |
C13A—C14 | 1.3744 (19) | C23A—C24 | 1.3761 (19) |
C14—C15 | 1.3907 (19) | C24—C25 | 1.3925 (19) |
C15—C16 | 1.3868 (19) | C25—C26 | 1.3899 (19) |
C16—C17 | 1.3980 (19) | C26—C27 | 1.3963 (19) |
C17—C17A | 1.387 (2) | C27—C27A | 1.388 (2) |
C17A—N11 | 1.4064 (17) | C27A—N21 | 1.4109 (17) |
C13A—C17A | 1.4031 (19) | C23A—C27A | 1.3999 (19) |
C12—O12 | 1.2070 (17) | C22—O22 | 1.2085 (18) |
C13—F131 | 1.3728 (16) | C23—F231 | 1.3641 (16) |
C13—F132 | 1.3534 (16) | C23—F232 | 1.3620 (16) |
C15—N15 | 1.4644 (17) | C25—N25 | 1.4662 (17) |
N15—O151 | 1.2294 (15) | N25—O251 | 1.2327 (15) |
N15—O152 | 1.2361 (15) | N25—O252 | 1.2301 (15) |
N11—H11 | 0.88 | N21—H21 | 0.88 |
C14—H14 | 0.95 | C24—H24 | 0.95 |
C16—H16 | 0.95 | C26—H26 | 0.95 |
C17—H17 | 0.95 | C27—H27 | 0.95 |
C12—N11—C17A | 111.65 (12) | C22—N21—C27A | 111.73 (11) |
C12—N11—H11 | 124.2 | C22—N21—H21 | 124.1 |
C17A—N11—H11 | 124.2 | C27A—N21—H21 | 124.1 |
N11—C12—C13 | 106.05 (11) | N21—C22—C23 | 106.46 (11) |
N11—C12—O12 | 129.45 (13) | N21—C22—O22 | 129.78 (13) |
O12—C12—C13 | 124.51 (13) | O22—C22—C23 | 123.75 (13) |
F131—C13—F132 | 105.94 (11) | F231—C23—F232 | 106.00 (11) |
C12—C13—C13A | 103.80 (11) | C22—C23—C23A | 103.84 (11) |
F132—C13—C13A | 115.80 (11) | F232—C23—C23A | 114.05 (11) |
F131—C13—C13A | 112.33 (11) | F231—C23—C23A | 114.01 (11) |
F132—C13—C12 | 110.75 (11) | F232—C23—C22 | 109.82 (11) |
F131—C13—C12 | 108.07 (11) | F231—C23—C22 | 109.06 (11) |
C14—C13A—C17A | 121.81 (13) | C24—C23A—C27A | 121.88 (13) |
C14—C13A—C13 | 130.75 (13) | C24—C23A—C23 | 130.34 (13) |
C17A—C13A—C13 | 107.44 (12) | C27A—C23A—C23 | 107.78 (12) |
C13A—C14—C15 | 116.30 (12) | C23A—C24—C25 | 116.23 (12) |
C13A—C14—H14 | 121.8 | C23A—C24—H24 | 121.9 |
C15—C14—H14 | 121.8 | C25—C24—H24 | 121.9 |
C16—C15—C14 | 123.03 (13) | C26—C25—C24 | 122.95 (12) |
C16—C15—N15 | 118.47 (12) | C26—C25—N25 | 118.75 (12) |
C14—C15—N15 | 118.46 (12) | C24—C25—N25 | 118.29 (12) |
O151—N15—O152 | 123.23 (12) | O252—N25—O251 | 123.77 (12) |
O151—N15—C15 | 118.41 (11) | O252—N25—C25 | 118.23 (11) |
O152—N15—C15 | 118.35 (11) | O251—N25—C25 | 118.00 (11) |
C15—C16—C17 | 120.25 (13) | C25—C26—C27 | 120.26 (13) |
C15—C16—H16 | 119.9 | C25—C26—H26 | 119.9 |
C17—C16—H16 | 119.9 | C27—C26—H26 | 119.9 |
C17A—C17—C16 | 117.21 (13) | C27A—C27—C26 | 117.21 (13) |
C17A—C17—H17 | 121.4 | C27A—C27—H27 | 121.4 |
C16—C17—H17 | 121.4 | C26—C27—H27 | 121.4 |
C17—C17A—C13A | 121.36 (13) | C27—C27A—C23A | 121.45 (12) |
C17—C17A—N11 | 128.38 (13) | C27—C27A—N21 | 128.50 (13) |
C13A—C17A—N11 | 110.24 (12) | C23A—C27A—N21 | 110.05 (12) |
C17A—N11—C12—O12 | 172.40 (14) | C27A—N21—C22—O22 | −176.36 (16) |
C17A—N11—C12—C13 | −7.80 (15) | C27A—N21—C22—C23 | 3.73 (16) |
O12—C12—C13—F132 | −46.13 (18) | O22—C22—C23—F232 | 54.01 (19) |
N11—C12—C13—F132 | 134.05 (12) | N21—C22—C23—F232 | −126.07 (12) |
O12—C12—C13—F131 | 69.50 (17) | O22—C22—C23—F231 | −61.74 (18) |
N11—C12—C13—F131 | −110.32 (12) | N21—C22—C23—F231 | 118.17 (12) |
O12—C12—C13—C13A | −171.05 (13) | O22—C22—C23—C23A | 176.35 (15) |
N11—C12—C13—C13A | 9.13 (14) | N21—C22—C23—C23A | −3.73 (15) |
F132—C13—C13A—C14 | 51.4 (2) | F232—C23—C23A—C24 | −58.4 (2) |
F131—C13—C13A—C14 | −70.49 (19) | F231—C23—C23A—C24 | 63.6 (2) |
C12—C13—C13A—C14 | 173.01 (14) | C22—C23—C23A—C24 | −177.87 (14) |
F132—C13—C13A—C17A | −128.87 (13) | F232—C23—C23A—C27A | 121.93 (13) |
F131—C13—C13A—C17A | 109.24 (13) | F231—C23—C23A—C27A | −116.12 (13) |
C12—C13—C13A—C17A | −7.26 (14) | C22—C23—C23A—C27A | 2.43 (15) |
C17A—C13A—C14—C15 | 0.3 (2) | C27A—C23A—C24—C25 | 0.5 (2) |
C13—C13A—C14—C15 | 179.97 (14) | C23—C23A—C24—C25 | −179.17 (14) |
C13A—C14—C15—C16 | −1.5 (2) | C23A—C24—C25—C26 | −0.2 (2) |
C13A—C14—C15—N15 | 176.25 (12) | C23A—C24—C25—N25 | −179.79 (12) |
C16—C15—N15—O151 | −168.87 (13) | C26—C25—N25—O252 | 15.50 (19) |
C14—C15—N15—O151 | 13.26 (19) | C24—C25—N25—O252 | −164.89 (12) |
C16—C15—N15—O152 | 12.06 (19) | C26—C25—N25—O251 | −164.24 (13) |
C14—C15—N15—O152 | −165.81 (13) | C24—C25—N25—O251 | 15.37 (18) |
C14—C15—C16—C17 | 1.3 (2) | C24—C25—C26—C27 | −0.5 (2) |
N15—C15—C16—C17 | −176.48 (13) | N25—C25—C26—C27 | 179.07 (13) |
C15—C16—C17—C17A | 0.2 (2) | C25—C26—C27—C27A | 0.9 (2) |
C16—C17—C17A—C13A | −1.4 (2) | C26—C27—C27A—C23A | −0.7 (2) |
C16—C17—C17A—N11 | 176.66 (14) | C26—C27—C27A—N21 | 179.38 (14) |
C14—C13A—C17A—C17 | 1.2 (2) | C24—C23A—C27A—C27 | −0.1 (2) |
C13—C13A—C17A—C17 | −178.54 (13) | C23—C23A—C27A—C27 | 179.67 (13) |
C14—C13A—C17A—N11 | −177.20 (13) | C24—C23A—C27A—N21 | 179.91 (13) |
C13—C13A—C17A—N11 | 3.04 (16) | C23—C23A—C27A—N21 | −0.36 (16) |
C12—N11—C17A—C17 | −174.99 (15) | C22—N21—C27A—C27 | 177.70 (14) |
C12—N11—C17A—C13A | 3.29 (17) | C22—N21—C27A—C23A | −2.27 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11···O22 | 0.88 | 2.15 | 2.8959 (17) | 142 |
N11—H11···O252i | 0.88 | 2.57 | 3.2972 (16) | 140 |
N21—H21···O12 | 0.88 | 2.23 | 2.9561 (16) | 140 |
N21—H21···O152ii | 0.88 | 2.46 | 3.1774 (15) | 139 |
C14—H14···O251iii | 0.95 | 2.52 | 3.3102 (18) | 140 |
C17—H17···O252i | 0.95 | 2.59 | 3.3708 (18) | 140 |
C24—H24···O151iv | 0.95 | 2.46 | 3.2766 (18) | 144 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+3/2; (iii) x−1, y, z+1; (iv) x+1, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C8H4F2N2O3 |
Mr | 214.13 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 120 |
a, b, c (Å) | 11.0529 (4), 15.4381 (6), 9.2768 (4) |
β (°) | 90.951 (2) |
V (Å3) | 1582.74 (11) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.17 |
Crystal size (mm) | 0.04 × 0.04 × 0.03 |
Data collection | |
Diffractometer | Bruker-Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.980, 0.995 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18600, 3611, 2980 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.090, 1.04 |
No. of reflections | 3611 |
No. of parameters | 271 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.24 |
Computer programs: COLLECT (Hooft, 1999), DENZO (Otwinowski & Minor, 1997) and COLLECT, DENZO and COLLECT, OSCAIL (McArdle , 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
N11—C12 | 1.3668 (19) | N21—C22 | 1.3602 (18) |
C12—C13 | 1.5576 (19) | C22—C23 | 1.5562 (19) |
C13—C13A | 1.4886 (19) | C23—C23A | 1.4863 (19) |
C13A—C14 | 1.3744 (19) | C23A—C24 | 1.3761 (19) |
C14—C15 | 1.3907 (19) | C24—C25 | 1.3925 (19) |
C15—C16 | 1.3868 (19) | C25—C26 | 1.3899 (19) |
C16—C17 | 1.3980 (19) | C26—C27 | 1.3963 (19) |
C17—C17A | 1.387 (2) | C27—C27A | 1.388 (2) |
C17A—N11 | 1.4064 (17) | C27A—N21 | 1.4109 (17) |
C13A—C17A | 1.4031 (19) | C23A—C27A | 1.3999 (19) |
C12—O12 | 1.2070 (17) | C22—O22 | 1.2085 (18) |
C13—F131 | 1.3728 (16) | C23—F231 | 1.3641 (16) |
C13—F132 | 1.3534 (16) | C23—F232 | 1.3620 (16) |
C15—N15 | 1.4644 (17) | C25—N25 | 1.4662 (17) |
N15—O151 | 1.2294 (15) | N25—O251 | 1.2327 (15) |
N15—O152 | 1.2361 (15) | N25—O252 | 1.2301 (15) |
N11—C12—C13 | 106.05 (11) | N21—C22—C23 | 106.46 (11) |
N11—C12—O12 | 129.45 (13) | N21—C22—O22 | 129.78 (13) |
O12—C12—C13 | 124.51 (13) | O22—C22—C23 | 123.75 (13) |
F131—C13—F132 | 105.94 (11) | F231—C23—F232 | 106.00 (11) |
C12—C13—C13A | 103.80 (11) | C22—C23—C23A | 103.84 (11) |
C14—C15—N15—O151 | 13.26 (19) | C24—C25—N25—O251 | 15.37 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11···O22 | 0.88 | 2.15 | 2.8959 (17) | 142 |
N11—H11···O252i | 0.88 | 2.57 | 3.2972 (16) | 140 |
N21—H21···O12 | 0.88 | 2.23 | 2.9561 (16) | 140 |
N21—H21···O152ii | 0.88 | 2.46 | 3.1774 (15) | 139 |
C14—H14···O251iii | 0.95 | 2.52 | 3.3102 (18) | 140 |
C17—H17···O252i | 0.95 | 2.59 | 3.3708 (18) | 140 |
C24—H24···O151iv | 0.95 | 2.46 | 3.2766 (18) | 144 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+3/2; (iii) x−1, y, z+1; (iv) x+1, y, z−1. |
Acknowledgements
X-ray data were collected at the EPSRC X-ray Crystallographic Service, University of Southampton, England; the authors thank the staff for all their help and advice. JNL thanks NCR Self-Service, Dundee, for grants which have provided computing facilities for this work. JLW thanks CNPq and FAPERJ for financial support.
References
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2,3-Indolinediones (isatins) are very versatile synthetic substrates, useful both in the synthesis of heterocyclic compounds, and as raw materials for drugs (da Silva et al., 2001). 3,3-Difluoro-2-oxindoles, prepared from 2,3-indolinediones by reaction with (diethylamino)sulfur trifluoride (Torres et al., 1999) have been shown to be particularly valuable precursors of pharmaceutically active materials (Boechat & Pinto, 2000). Here we report the molecular and supramolecular structure of the title compound, (I), a typical simply substituted 3,3-difluoro-2-oxindole.
Compound (I) (Fig. 1) crystallizes in space group P21/c with Z' = 2. The bond distances and angles within the two independent molecules are very similar (Table 1), but there are a number of unusual values consistently observed for the two molecules. The distances Cn2—Cn3 (n = 1 or 2) are long for their type, where the mean value (Allen et al., 1987) is 1.511 Å and the upper-quartile value 1.521 Å. In addition, there are indications of weak bond fixation within the aryl rings. Likewise, the interbond angles at both Cn2 and Cn3 show some unexpected values. In particular, the opposed pair of angles Fn31—Cn3—Fn32 and Cn2—Cn3—Cn3A (n = 1 or 2) are all significantly less than the idealized tetrahedral values; normally, the distortions in opposed pairs of angles are such that one angle is significantly larger and one is significantly smaller than the idealized value. While the bicyclic skeletons are essentially planar, the nitro groups are both twisted away from these planes. The nitro groups containing atoms N15 and N25 make dihedral angles with the adjacent rings of 13.2 (2)° and 15.6 (2)°, respectively. The sense of these rotations, as shown by the key torsion angles (Table 1), indicates approximate twofold rotational symmetry for the selected asymmetric unit.
The two independent molecules of (I) are linked by paired N—H···O hydrogen bonds with carbonyl acceptors (Table 2), the dimensions of which differ sufficiently to preclude the possibility of any additional symmetry. These two interactions are each, in fact, one component of a planar but asymmetric three-centre N—H···(O)2 system, in each of which the second acceptor is a nitro O atom, and these longer, and weaker, components link the bimolecular aggregates (Fig. 1) into continuous sheets.
Atom N11 in the type 1 molecule (n = 1) at (x, y, z) acts as hydrogen-bond donor to nitro atom O252 in the type 2 molecule (n = 2) at (1 − x, y − 1/2, 1/2 − z), so forming a C12(9)[R22(8)] chain of rings (Bernstein et al., 1995) running parallel to the [010] direction, and generated by the 21 screw axis along (1/2, y, 1/4) (Fig. 2). Similarly, atom N21 at (x, y, z) acts as hydrogen-bond donor to O152 at (−x, 1/2 + y, 3/2 − z), so producing a second C12(9)[R22(8)] chain of rings, this time along (0, y, 3/4) (Fig. 3). The combination of these two chain motifs generates a (101) sheet containing R22(8) and R46(34) rings (Fig. 4), in which each bimolecular aggregate is linked to four others. Hence, if these aggregates are regarded as the nodes of the resulting net, this is of the (4,4) type (Batten & Robson, 1998). Two (101) sheets, related to one another by inversion, pass through each unit cell.
There are neither C—H···π(arene) hydrogen bonds nor aromatic π–π stacking interactions between the components of adjacent sheets. The only significant C—H···O hydrogen bonds (Table 2) all lie within a single (101) sheet. There are some short F···N contacts involving nitro N atoms between molecules in adjacent sheets, namely C15—N15···F232i, with N15···F232i 2.915 (2) Å and C15—N15···F232i 109.6 (2)° [symmetry code (i) −x, 1 − y, 1 − z], and C25—H25···F232ii, with N25···F231ii 2.947 (2) Å and C25—N25···F231ii 91.2 (2)° [symmetry code (ii) x, 3/2 − y, z − 1/2], but the status of such dipolar contacts, in terms of their possible structural significance, has not yet been established.