organic compounds
Hydrogen bonding in C-substituted nitroanilines: simple C(8) chains in 2-bromo-6-chloro-4-nitroaniline
aSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland, bDepartment of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen AB24 3UE, Scotland, and cInstituto de Química, Departamento de Química Inorgânica, Universidade Federal do Rio de Janeiro, 21945-970 Rio de Janeiro, RJ, Brazil
*Correspondence e-mail: cg@st-andrews.ac.uk
In the title compound, C6H4BrClN2O2, the Br and Cl substituents are disordered over two sites, and the intramolecular dimensions provide evidence for charge polarization. The molecules are linked into C(8) chains by a single N—H⋯O hydrogen bond.
Comment
We report here the structure of the title compound, (I), which we compare with the structures of four other closely related 2,6-substituted 4-nitroanilines, namely 2,6-dichloro-4-nitroaniline, (II) (Hughes & Trotter, 1971), 2,6-dibromo-4-nitroaniline, (III) (Bryant et al., 1998), 2-bromo-6-cyano-4-nitroaniline, (IV) (Glidewell et al., 2002), and 2-iodo-6-methoxy-4-nitroaniline, (V) (Garden et al., 2005).
In molecules of (I) (Fig. 1), the Br and Cl substituents are disordered between the 2- and 6-positions in the aryl ring. of the site occupancies showed that position 2 is occupied equally by the two substituents, whereas there is slight preponderance of Cl at position 6, corresponding to co-crystallization of (I) with 10% of the dichloro analogue (II); compound (II) is isomorphous with (I) but not strictly isostructural. The sample of (I) originated in an industrial preparation using bromination of 2-chloro-4-nitroaniline and it seems likely that the 2,6-dichloro compound (II) may have been present as an impurity before the bromination step.
The C—C bond distances in (I) show marked bond fixation (Table 1), with the C2—C3 and C5—C6 distances significantly shorter than the rest; correspondingly, the two C—N distances are both short for their types (Allen et al., 1987), while the N—O distances are both long. These observations taken all together point to the importance of the charge-separated form (Ia) (see scheme) as an important contributor to the overall molecular–electronic structure, as commonly found in 4-nitroanilines. Consistent with the contribution of form (Ia), the dihedral angle between the nitro group and the aryl ring is only 6.6 (2)°.
The molecules of (I) are linked into simple chains by a single N—H⋯O hydrogen bond (Table 2). Amine atom N1 in the molecule at (x, y, z) acts as a hydrogen-bond donor, via H1A, to nitro atom O41 in the molecule at (1 − x, − + y, − z), so forming a C(8) chain (Bernstein et al., 1995) running parallel to the [010] direction and generated by the 21 screw axis along (, y, ) (Fig. 2). Two antiparallel chains of this type, related to one another by inversion, pass through each but there are no direction specific interactions between adjacent chains; in particular, there are no potential acceptors in other chains within hydrogen-bonding distance of H1B.
In (II), the molecules are again linked by a single N—H⋯O hydrogen bond into C(8) chains virtually identical to those in (I) (Hughes & Trotter, 1971). Hence, the presence of a small proportion of (II) co-crystallized with (I) appears to have no significant influence on the supramolecular structure adopted by (I), which in addition retains the sharp melting point of the pure compound (Körner & Contardi, 1914). In contrast to the very simple aggregation in (I) and (II), the molecules of (III), which lie across mirror planes in P21/m, are linked by paired N—H⋯O hydrogen bonds into C(8)[R22(6)] chains of rings, further linked into sheets by bromo–nitro interactions (Bryant et al., 1998). In compound (IV), the molecules are linked by a combination of one N—H⋯O and one N—H⋯N hydrogen bond into sheets of alternating R22(12) and R66(36) rings (Glidewell et al., 2002), while in compound (V), hydrogen-bonded C(8)C(8)[R22(6)] chains of rings are linked into quite complex ribbons by two-centre iodo–nitro interactions (Garden et al., 2005). In each of (III)–(V), the two N—H bonds of the amine group both participate in the hydrogen bonding, in contrast to the situation in (I) and (II), where one of the N—H bonds plays no role in the supramolecular aggregation.
Experimental
The sample of (I) employed was a gift from ICI; crystals suitable for single-crystal X-ray diffraction were grown by slow evaporation of a solution in ethanol [m.p. 450–452 K; literature m.p. 450 K (Körner & Contardi, 1914)].
Crystal data
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Refinement
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The P21/c was uniquely assigned from the All H atoms were located from difference maps and then treated as riding atoms, with C—H distances of 0.93 Å and N—H distances of 0.86 Å, and with Uiso(H) values of 1.2Ueq(C,N). It was apparent from an early stage that the Cl and Br substituents were disordered between the sites bonded to C2 and C6. of the site-occupancy factors for the substituents at C2 led to values of 0.503 (6) and 0.497 (6) for Cl and Br, respectively; these were thereafter fixed at 0.50. of the site-occupancy factors for the substituents at C6 led to values of 0.603 (5) and 0.397 (5) for Cl and Br, respectively; these were thereafter fixed at 0.60 and 0.40, respectively. Refinements with the occupancy factors for all the halogen sites fixed at 0.50 (to force equal populations of Cl and Br) led to significantly higher R values and hence this model was decisively rejected. Because of the fairly close similarity between the C—Cl and C—Br distances, it was necessary to apply DFIX restraints to the four independent C—X (X = Cl and Br) distances.
Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S0108270105010085/sk1832sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270105010085/sk1832Isup2.hkl
The sample of (I) employed was a gift from ICI; crystals suitable for single-crystal X-ray diffraction were grown by slow evaporation of a solution in ethanol [m.p. 450–452 K; literature m.p. 450 K (Körner & Contardi, 1914)].
The
P21/c was uniquely assigned from the All H atoms were located from difference maps and then treated as riding atoms, with C—H distances of 0.93 Å and N—H distances of 0.86 Å, and with Uiso(H) values of 1.2Ueq(C,N). It was apparent from an early stage that the Cl and Br substituents were disordered between the sites bonded to C2 and C6. of the site-occupancy factors for the substituents at C2 led to values of 0.503 (6) and 0.497 (6) for Cl and Br, respectively; these were thereafter both fixed at 0.50. of the site-occupancy factors for the substituents at C6 led to values of 0.603 (5) and 0.397 (5) for Cl and Br, respectively; these were thereafter fixed at 0.60 and 0.40, respectively. Refinements with the occupancy factors for all the halogen sites fixed at 0.50 (to force equal populations of Cl and Br) led to significantly higher R values, and hence this model was decisively rejected. Because of the fairly close similarity between the C—Cl and C—Br distances, it was necessary to apply DFIX restraints to the four independent C—X (X = Cl and Br) distances.Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).C6H4Br0.90Cl1.10N2O2 | F(000) = 480.8 |
Mr = 247.02 | Dx = 1.996 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1863 reflections |
a = 3.8052 (3) Å | θ = 2.0–27.5° |
b = 17.9667 (13) Å | µ = 4.83 mm−1 |
c = 12.0417 (9) Å | T = 298 K |
β = 93.224 (2)° | Plate, red |
V = 821.95 (11) Å3 | 0.49 × 0.16 × 0.06 mm |
Z = 4 |
Bruker SMART 1000 CCD area detector diffractometer | 1863 independent reflections |
Radiation source: Bruker-Nonius FR91 rotating anode | 1357 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
ϕ–ω scans | θmax = 27.5°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −4→4 |
Tmin = 0.201, Tmax = 0.749 | k = −23→16 |
5904 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.087 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0477P)2] where P = (Fo2 + 2Fc2)/3 |
1863 reflections | (Δ/σ)max = 0.001 |
129 parameters | Δρmax = 0.50 e Å−3 |
4 restraints | Δρmin = −0.38 e Å−3 |
C6H4Br0.90Cl1.10N2O2 | V = 821.95 (11) Å3 |
Mr = 247.02 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 3.8052 (3) Å | µ = 4.83 mm−1 |
b = 17.9667 (13) Å | T = 298 K |
c = 12.0417 (9) Å | 0.49 × 0.16 × 0.06 mm |
β = 93.224 (2)° |
Bruker SMART 1000 CCD area detector diffractometer | 1863 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 1357 reflections with I > 2σ(I) |
Tmin = 0.201, Tmax = 0.749 | Rint = 0.037 |
5904 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 4 restraints |
wR(F2) = 0.087 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.50 e Å−3 |
1863 reflections | Δρmin = −0.38 e Å−3 |
129 parameters |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br2 | 0.1862 (12) | 0.3784 (4) | 0.4908 (2) | 0.0367 (6) | 0.50 |
Br6 | 0.832 (2) | 0.2873 (4) | 0.9060 (7) | 0.0507 (11) | 0.40 |
Cl2 | 0.152 (3) | 0.3787 (11) | 0.5097 (5) | 0.0362 (14) | 0.50 |
Cl6 | 0.778 (4) | 0.2869 (5) | 0.8918 (11) | 0.0446 (12) | 0.60 |
N1 | 0.4805 (8) | 0.26991 (16) | 0.6681 (3) | 0.0545 (8) | |
N4 | 0.5273 (9) | 0.56628 (18) | 0.8132 (3) | 0.0569 (8) | |
O41 | 0.3704 (10) | 0.61269 (16) | 0.7523 (3) | 0.0789 (9) | |
O42 | 0.6807 (10) | 0.58180 (18) | 0.9026 (3) | 0.0838 (10) | |
C1 | 0.4947 (8) | 0.34078 (17) | 0.7041 (3) | 0.0370 (7) | |
C2 | 0.3633 (7) | 0.40011 (17) | 0.63759 (16) | 0.0359 (7) | |
C3 | 0.3719 (8) | 0.47309 (17) | 0.6714 (3) | 0.0383 (7) | |
C4 | 0.5183 (8) | 0.48899 (19) | 0.7769 (3) | 0.0404 (8) | |
C5 | 0.6536 (8) | 0.4335 (2) | 0.8470 (3) | 0.0427 (8) | |
C6 | 0.6380 (7) | 0.36189 (15) | 0.8095 (2) | 0.0395 (8) | |
H1A | 0.5584 | 0.2346 | 0.7111 | 0.065* | |
H1B | 0.3883 | 0.2597 | 0.6031 | 0.065* | |
H3 | 0.2823 | 0.5108 | 0.6250 | 0.046* | |
H5 | 0.7519 | 0.4447 | 0.9175 | 0.051* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br2 | 0.0409 (11) | 0.0396 (7) | 0.0290 (9) | −0.0005 (9) | −0.0021 (10) | 0.0000 (11) |
Br6 | 0.037 (2) | 0.0630 (12) | 0.050 (2) | 0.0040 (9) | −0.0141 (13) | 0.0272 (11) |
Cl2 | 0.0378 (19) | 0.0454 (18) | 0.026 (2) | −0.0016 (14) | 0.0046 (18) | −0.003 (2) |
Cl6 | 0.034 (3) | 0.0550 (17) | 0.042 (2) | 0.0067 (15) | −0.0151 (18) | 0.0203 (12) |
N1 | 0.069 (2) | 0.0347 (17) | 0.059 (2) | 0.0049 (14) | −0.0034 (17) | 0.0026 (14) |
N4 | 0.074 (2) | 0.0446 (19) | 0.053 (2) | −0.0122 (17) | 0.0105 (17) | −0.0092 (16) |
O41 | 0.117 (3) | 0.0373 (18) | 0.082 (2) | 0.0081 (16) | −0.0024 (19) | −0.0034 (14) |
O42 | 0.118 (3) | 0.068 (2) | 0.065 (2) | −0.0216 (19) | −0.0024 (18) | −0.0247 (16) |
C1 | 0.0359 (16) | 0.0319 (18) | 0.0437 (19) | 0.0020 (13) | 0.0066 (14) | 0.0042 (14) |
C2 | 0.0302 (15) | 0.0356 (17) | 0.0419 (18) | −0.0013 (12) | 0.0027 (13) | 0.0016 (13) |
C3 | 0.0368 (16) | 0.0309 (17) | 0.048 (2) | 0.0003 (13) | 0.0059 (14) | 0.0058 (14) |
C4 | 0.0426 (18) | 0.0368 (19) | 0.0423 (19) | −0.0037 (14) | 0.0077 (14) | −0.0033 (15) |
C5 | 0.0400 (17) | 0.053 (2) | 0.0351 (18) | −0.0077 (15) | 0.0016 (14) | 0.0019 (15) |
C6 | 0.0326 (16) | 0.0389 (19) | 0.047 (2) | 0.0010 (14) | 0.0044 (14) | 0.0117 (15) |
C1—C2 | 1.408 (4) | N4—O42 | 1.228 (4) |
C2—C3 | 1.373 (4) | C2—Cl2 | 1.741 (2) |
C3—C4 | 1.387 (5) | C2—Br2 | 1.8965 (19) |
C4—C5 | 1.387 (5) | C3—H3 | 0.93 |
C5—C6 | 1.364 (5) | C5—H5 | 0.93 |
C6—C1 | 1.404 (5) | C6—Cl6 | 1.738 (2) |
C1—N1 | 1.345 (4) | C6—Br6 | 1.8963 (19) |
C4—N4 | 1.456 (5) | N1—H1A | 0.86 |
N4—O41 | 1.241 (4) | N1—H1B | 0.86 |
N1—C1—C6 | 123.6 (3) | C6—C5—C4 | 117.9 (3) |
N1—C1—C2 | 121.8 (3) | C6—C5—H5 | 121.0 |
C6—C1—C2 | 114.6 (2) | C4—C5—H5 | 121.0 |
C3—C2—C1 | 123.5 (2) | C5—C6—C1 | 124.2 (2) |
C3—C2—Cl2 | 118.4 (7) | C5—C6—Cl6 | 122.4 (6) |
C1—C2—Cl2 | 117.9 (7) | C1—C6—Cl6 | 113.4 (5) |
C3—C2—Br2 | 118.3 (3) | C5—C6—Br6 | 117.0 (4) |
C1—C2—Br2 | 118.1 (3) | C1—C6—Br6 | 118.8 (4) |
C2—C3—C4 | 118.0 (3) | C1—N1—H1A | 119.9 |
C2—C3—H3 | 121.0 | C1—N1—H1B | 120.1 |
C4—C3—H3 | 121.0 | H1A—N1—H1B | 120.0 |
C5—C4—C3 | 121.7 (3) | O42—N4—O41 | 123.7 (4) |
C5—C4—N4 | 120.1 (3) | O42—N4—C4 | 118.8 (4) |
C3—C4—N4 | 118.2 (3) | O41—N4—C4 | 117.5 (3) |
N1—C1—C2—C3 | 179.8 (3) | C4—C5—C6—C1 | 0.2 (5) |
C6—C1—C2—C3 | 0.0 (4) | C4—C5—C6—Cl6 | −176.7 (6) |
N1—C1—C2—Cl2 | 4.4 (6) | C4—C5—C6—Br6 | 178.9 (4) |
C6—C1—C2—Cl2 | −175.4 (5) | N1—C1—C6—C5 | −179.9 (3) |
N1—C1—C2—Br2 | −3.4 (5) | C2—C1—C6—C5 | −0.1 (4) |
C6—C1—C2—Br2 | 176.8 (3) | N1—C1—C6—Cl6 | −2.7 (7) |
C1—C2—C3—C4 | 0.0 (4) | C2—C1—C6—Cl6 | 177.1 (6) |
Cl2—C2—C3—C4 | 175.4 (5) | N1—C1—C6—Br6 | 1.4 (6) |
Br2—C2—C3—C4 | −176.8 (3) | C2—C1—C6—Br6 | −178.8 (4) |
C2—C3—C4—C5 | 0.1 (4) | C5—C4—N4—O42 | 5.7 (5) |
C2—C3—C4—N4 | −179.9 (3) | C3—C4—N4—O42 | −174.3 (3) |
C3—C4—C5—C6 | −0.2 (5) | C5—C4—N4—O41 | −172.6 (3) |
N4—C4—C5—C6 | 179.8 (3) | C3—C4—N4—O41 | 7.4 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O41i | 0.86 | 2.25 | 3.026 (4) | 151 |
Symmetry code: (i) −x+1, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C6H4Br0.90Cl1.10N2O2 |
Mr | 247.02 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 3.8052 (3), 17.9667 (13), 12.0417 (9) |
β (°) | 93.224 (2) |
V (Å3) | 821.95 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 4.83 |
Crystal size (mm) | 0.49 × 0.16 × 0.06 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.201, 0.749 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5904, 1863, 1357 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.087, 1.02 |
No. of reflections | 1863 |
No. of parameters | 129 |
No. of restraints | 4 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.50, −0.38 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2000), SAINT, OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
C1—C2 | 1.408 (4) | C6—C1 | 1.404 (5) |
C2—C3 | 1.373 (4) | C1—N1 | 1.345 (4) |
C3—C4 | 1.387 (5) | C4—N4 | 1.456 (5) |
C4—C5 | 1.387 (5) | N4—O41 | 1.241 (4) |
C5—C6 | 1.364 (5) | N4—O42 | 1.228 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O41i | 0.86 | 2.25 | 3.026 (4) | 151 |
Symmetry code: (i) −x+1, y−1/2, −z+3/2. |
Acknowledgements
X-ray data were collected at the University of Aberdeen; the authors thank the university for funding the purchase of the diffractometer.
References
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We report here the structure of the title compound (I), which we compare with the structures of four other closely related 2,6-substituted 4-nitroanilines, namely 2,6-dichloro-4-nitroaniline, (II) (Hughes & Trotter, 1971), 2,6-dibromo-4-nitroaniline, (III) (Bryant et al., 1998), 2-bromo-6-cyano-4-nitroaniline, (IV) (Glidewell et al., 2002), and 2-iodo-6-methoxy-4-nitroaniline, (V) (Garden et al., 2005).
In molecules of (I) (Fig. 1), the Br and Cl substituents are disordered between the 2- and 6-positions in the aryl ring. Refinement of the site occupancies showed that position 2 is occupied equally by the two substituents, whereas there is slight preponderance of Cl at position 6, corresponding to cocrystallization of (I) with 10% of the dichloro analogue (II), which is isomorphous with (I) but not strictly isostructural. The sample of (I) originated in an industrial preparation using bromination of 2-chloro-4-nitroaniline, and it seems likely that the 2,6-dichloro compound (II) may have been present as an impurity before the bromination step.
The C—C bond distances in (I) show marked bond fixation (Table 1), with the C2—C3 and C5—C6 distances significantly shorter than the rest; correspondingly, the two C—N distances are both short for their types (Allen et al., 1987), while the N—O distances are both long. These observations taken all together point to the importance of the charge-separated form (Ia) as an important contributor to the overall molecular–electronic structure, as commonly found in 4-nitroanilines. Consistent with the contribution of form (Ia), the dihedral angle between the nitro group and the aryl ring is only 6.6 (2)°.
The molecules of (I) are linked into simple chains by a single N—H···O hydrogen bond (Table 2). Amine atom N1 in the molecule at (x, y, z) acts as hydrogen-bond donor, via H1A, to nitro atom O41 in the molecule at (1 − x, −1/2 + y, 1.5 − z), so forming a C(8) chain (Bernstein et al., 1995) running parallel to he [010] direction and generated by the 21 screw axis along (1/2, y, 3/4) (Fig. 2). Two antiparallel chains of this type, related to one another by inversion, pass through each unit cell, but there are no direction specific interactions between adjacent chains; in particular, there are no potential acceptors in other chains within hydrogen bonding distance of H1B.
In compound (II), the molecules are again linked by a single N—H···O hydrogen bond into C(8) chains virtually identical to those in compound (I) (Hughes & Trotter, 1971). Hence the presence of a small proportion of (II) cocrystallized with (I) appears to have no significant influence on the supramolecular structure adopted by (I), which in addition retains the sharp melting point of the pure compound (Körner & Contardi, 1914). In contrast to the very simple aggregation in (I) and (II), the molecules of (III), which lie across mirror planes in space group P21/m, are linked by paired N—H···O hydrogen bonds into C(8)[R22(6)] chains of rings, further linked into sheets by bromo–nitro interactions (Bryant et al., 1998). In compound (IV), the molecules are linked by a combination of one N—H···O and one N—H···N hydrogen bond into sheets of alternating R22(12) and R66(36) rings (Glidewell et al., 2002), while in compound (V), hydrogen-bonded C(8)C(8)[R22(6)] chains of rings are linked into quite complex ribbons by two-centre iodo–nitro interactions (Garden et al., 2005). In each of (III)–(V), the two N—H bonds of the amine group both participate in the hydrogen bonding, in contrast to the situation in (I) and (II), where one of the N—H bonds plays no role in the supramolecular aggregation.