organic compounds
2-(2-Pyridyl)pyridinium perchlorate, redetermined at 120 K: complex hydrogen-bonded sheets
aSchool of Chemistry, Bharathidasan University, Tiruchirappalli, Tamil Nadu 620 024, India, bDepartment of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen AB24 3UE, Scotland, and cSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland
*Correspondence e-mail: cg@st-andrews.ac.uk
In the title compound, C10H9N2+·ClO4−, the ions are linked into complex sheets by the combination of one N—H⋯O and four independent C—H⋯O hydrogen bonds.
Comment
The structure of the title compound, (I), was determined many years ago (Lipkowski et al., 1976); using diffraction data collected at ambient temperature, the structure was refined only to R = 0.072. We have now redetermined this structure using diffraction data collected at 120 K and report here a more precise determination, together with the interesting supramolecular structure of this compound. The and unit-cell dimensions confirm that the previous study and the present work involve the same phase.
The title compound (Fig. 1) is a salt, and in the selected the two ions are linked by an N—H⋯O hydrogen bond. In the cation, the dihedral angle between the two ring planes is 14.96 (15)°, similar to the value of 16.6° reported previously for the ambient-temperature structure (Lipkowski et al., 1976). In addition, there is a significant difference in the C—N—C angles at the protonated atom N11 and the unprotonated atom N21 (Table 1). In the anion, the Cl—O distance involving atom O1 is somewhat longer than the other Cl—O distances, possibly reflecting some modest localization of the negative charge.
In addition to the N—H⋯O hydrogen bond, involving the more negative atom O1 as the acceptor, there are a number of independent C—H⋯O hydrogen bonds (Table 2). Although these all have fairly long H⋯O distances, they all appear to have some structural significance, including the effective tethering of the perchlorate anion, for which the anisotropic displacement parameters give no indication of significant libration, far less of the type of disorder for which this anion is notorious. Hence, we conclude that these interactions are significant. All of the hydrogen bonds involve donors in the protonated pyridinium ring, leading to more acidic X—H bonds (X = C or N), and all four O atoms of the anion act as acceptors, so precluding any significant librational motion for the anion.
The C—H⋯O hydrogen bond involving atom C16 as the donor reinforces the N—H⋯O hydrogen bond in linking together the two independent ions, so forming an R22(7) motif, and the combination of this and the interaction having atom C13 as the donor then generates by translation a C22(8)C22(9)[R22(7)] chain of rings running parallel to the [10] direction (Fig. 2). The two hydrogen bonds having atoms C14 and C15 as the donors act co-operatively to form a zigzag chain of edge-fused rings running parallel to the [20] direction and generated by the c-glide plane at y = 0 (Fig. 3). The combination of the [10] and [20] chains then generates a complex (010) sheet.
Experimental
2,2′-Bipyridine (3.2 mmol) was dissolved in ethanol (25 ml) and perchloric acid (3.2 mmol) was then added dropwise. The reaction mixture was warmed in a water bath for 15 min and colourless crystals of (I) separated out on cooling (m.p. 441 K).
Crystal data
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Refinement
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The Pc and P2/c as possible space groups; Pc was selected and confirmed by the subsequent analysis. All H atoms were located in difference maps and then treated as riding atoms, with C—H distances of 0.95 Å and N—H distances of 0.88 Å, and with Uiso(H) = 1.2Ueq(C,N). The correct orientation of the structure with respect to the polar-axis directions (Jones, 1986) was determined by means of the Flack (1983) parameter.
permittedData collection: COLLECT (Hooft, 1999); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S0108270105018810/sk1853sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270105018810/sk1853Isup2.hkl
2,2'-Bipyridine (3.2 mmol) was dissolved in ethanol (Volume?) and perchloric acid (3.2 mmol) was then added dropwise. The reaction mixture was warmed in a water bath for 15 min and colourless crystals of (I) suitable for single-crystal X-ray diffraction separated out on cooling (m.p. 441 K).
The
permitted Pc and P2/c as possible space groups. Pc was selected and confirmed by the subsequent analysis. All H atoms were located in difference maps and then treated as riding atoms, with C—H distances of 0.95 Å and N—H distances of 0.88 Å, and with Uiso(H) = 1.2Ueq(C,N). The correct orientation of the structure with respect to the polar axis directions (Jones, 1986) was determined by means of the (Flack, 1983).Data collection: COLLECT (Hooft, 1999); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).C10H9N2+·ClO4− | F(000) = 264 |
Mr = 256.64 | Dx = 1.602 Mg m−3 |
Monoclinic, Pc | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P -2yc | Cell parameters from 2313 reflections |
a = 5.958 (4) Å | θ = 3.2–27.5° |
b = 12.854 (4) Å | µ = 0.36 mm−1 |
c = 7.060 (11) Å | T = 120 K |
β = 100.26 (7)° | Plate, colourless |
V = 532.0 (9) Å3 | 0.18 × 0.12 × 0.02 mm |
Z = 2 |
Bruker Nonius KappaCCD area-detector diffractometer | 2313 independent reflections |
Radiation source: Bruker-Nonius FR91 rotating anode | 2035 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.2° |
ϕ and ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −16→16 |
Tmin = 0.954, Tmax = 0.993 | l = −9→9 |
6904 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.115 | w = 1/[σ2(Fo2) + (0.0712P)2 + 0.011P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
2313 reflections | Δρmax = 0.46 e Å−3 |
155 parameters | Δρmin = −0.46 e Å−3 |
2 restraints | Absolute structure: Flack (1983), with 1086 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.03 (16) |
C10H9N2+·ClO4− | V = 532.0 (9) Å3 |
Mr = 256.64 | Z = 2 |
Monoclinic, Pc | Mo Kα radiation |
a = 5.958 (4) Å | µ = 0.36 mm−1 |
b = 12.854 (4) Å | T = 120 K |
c = 7.060 (11) Å | 0.18 × 0.12 × 0.02 mm |
β = 100.26 (7)° |
Bruker Nonius KappaCCD area-detector diffractometer | 2313 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2035 reflections with I > 2σ(I) |
Tmin = 0.954, Tmax = 0.993 | Rint = 0.046 |
6904 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.115 | Δρmax = 0.46 e Å−3 |
S = 1.07 | Δρmin = −0.46 e Å−3 |
2313 reflections | Absolute structure: Flack (1983), with 1086 Friedel pairs |
155 parameters | Absolute structure parameter: 0.03 (16) |
2 restraints |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.78153 (11) | 0.18772 (5) | 0.12569 (11) | 0.02248 (19) | |
O1 | 0.7292 (4) | 0.25897 (17) | 0.2714 (3) | 0.0264 (5) | |
O2 | 1.0236 (4) | 0.18298 (16) | 0.1357 (3) | 0.0288 (5) | |
O3 | 0.6951 (4) | 0.08604 (18) | 0.1587 (4) | 0.0432 (7) | |
O4 | 0.6765 (4) | 0.2262 (2) | −0.0603 (3) | 0.0397 (6) | |
N11 | 0.3950 (4) | 0.21493 (19) | 0.5136 (4) | 0.0205 (5) | |
N21 | 0.4404 (4) | 0.42048 (19) | 0.5365 (4) | 0.0221 (6) | |
C12 | 0.2347 (5) | 0.2674 (2) | 0.5864 (4) | 0.0207 (6) | |
C13 | 0.0777 (5) | 0.2114 (3) | 0.6677 (5) | 0.0244 (7) | |
C14 | 0.0897 (5) | 0.1034 (3) | 0.6715 (5) | 0.0256 (7) | |
C15 | 0.2574 (6) | 0.0523 (2) | 0.5932 (5) | 0.0277 (7) | |
C16 | 0.4097 (5) | 0.1101 (2) | 0.5145 (4) | 0.0240 (7) | |
C22 | 0.2440 (5) | 0.3824 (2) | 0.5763 (4) | 0.0200 (6) | |
C23 | 0.0631 (5) | 0.4445 (2) | 0.6077 (5) | 0.0231 (6) | |
C24 | 0.0889 (5) | 0.5522 (2) | 0.6041 (5) | 0.0247 (6) | |
C25 | 0.2908 (5) | 0.5928 (2) | 0.5643 (4) | 0.0237 (6) | |
C26 | 0.4596 (5) | 0.5242 (2) | 0.5293 (5) | 0.0241 (6) | |
H11 | 0.4954 | 0.2507 | 0.4627 | 0.025* | |
H13 | −0.0373 | 0.2464 | 0.7205 | 0.029* | |
H14 | −0.0170 | 0.0644 | 0.7277 | 0.031* | |
H15 | 0.2660 | −0.0215 | 0.5945 | 0.033* | |
H16 | 0.5257 | 0.0767 | 0.4604 | 0.029* | |
H23 | −0.0749 | 0.4143 | 0.6311 | 0.028* | |
H24 | −0.0298 | 0.5969 | 0.6284 | 0.030* | |
H25 | 0.3136 | 0.6659 | 0.5609 | 0.028* | |
H26 | 0.5961 | 0.5525 | 0.4987 | 0.029* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0211 (3) | 0.0219 (3) | 0.0249 (4) | −0.0002 (3) | 0.0053 (2) | −0.0006 (3) |
O1 | 0.0290 (11) | 0.0263 (12) | 0.0264 (12) | 0.0023 (8) | 0.0116 (8) | −0.0028 (9) |
O2 | 0.0180 (11) | 0.0313 (13) | 0.0376 (14) | 0.0023 (8) | 0.0066 (10) | 0.0009 (9) |
O3 | 0.0449 (15) | 0.0218 (13) | 0.068 (2) | −0.0139 (11) | 0.0248 (14) | −0.0085 (12) |
O4 | 0.0348 (14) | 0.0613 (17) | 0.0212 (13) | 0.0141 (11) | 0.0005 (10) | 0.0028 (11) |
N11 | 0.0211 (12) | 0.0219 (12) | 0.0187 (13) | −0.0006 (10) | 0.0043 (10) | −0.0021 (10) |
N21 | 0.0209 (12) | 0.0234 (13) | 0.0230 (14) | −0.0002 (10) | 0.0069 (10) | −0.0016 (10) |
C12 | 0.0166 (14) | 0.0248 (15) | 0.0202 (16) | 0.0015 (11) | 0.0019 (11) | −0.0005 (12) |
C13 | 0.0209 (15) | 0.0303 (16) | 0.0224 (17) | 0.0003 (12) | 0.0045 (12) | 0.0037 (13) |
C14 | 0.0237 (15) | 0.0268 (16) | 0.0263 (17) | −0.0043 (12) | 0.0042 (12) | 0.0077 (13) |
C15 | 0.0309 (17) | 0.0239 (15) | 0.0260 (19) | −0.0025 (13) | −0.0010 (14) | 0.0017 (13) |
C16 | 0.0298 (16) | 0.0209 (15) | 0.0204 (16) | 0.0026 (11) | 0.0018 (12) | 0.0001 (12) |
C22 | 0.0155 (13) | 0.0259 (15) | 0.0180 (16) | −0.0012 (10) | 0.0010 (11) | −0.0007 (11) |
C23 | 0.0202 (15) | 0.0233 (15) | 0.0257 (16) | 0.0016 (11) | 0.0043 (12) | −0.0022 (12) |
C24 | 0.0245 (15) | 0.0239 (16) | 0.0244 (16) | 0.0011 (12) | 0.0005 (12) | −0.0022 (13) |
C25 | 0.0233 (15) | 0.0220 (15) | 0.0233 (16) | 0.0003 (11) | −0.0026 (13) | −0.0023 (11) |
C26 | 0.0200 (13) | 0.0283 (16) | 0.0235 (15) | −0.0041 (12) | 0.0028 (11) | −0.0014 (12) |
N11—C12 | 1.344 (4) | N21—C22 | 1.344 (4) |
N11—C16 | 1.350 (4) | C22—C23 | 1.391 (4) |
N11—H11 | 0.88 | C23—C24 | 1.393 (4) |
C12—C13 | 1.383 (4) | C23—H23 | 0.95 |
C12—C22 | 1.481 (4) | C24—C25 | 1.386 (4) |
C13—C14 | 1.390 (4) | C24—H24 | 0.95 |
C13—H13 | 0.95 | C25—C26 | 1.392 (4) |
C14—C15 | 1.390 (5) | C25—H25 | 0.95 |
C14—H14 | 0.95 | C26—H26 | 0.95 |
C15—C16 | 1.365 (5) | Cl1—O1 | 1.452 (3) |
C15—H15 | 0.95 | Cl1—O2 | 1.433 (2) |
C16—H16 | 0.95 | Cl1—O3 | 1.439 (2) |
N21—C26 | 1.340 (4) | Cl1—O4 | 1.438 (3) |
C12—N11—C16 | 123.3 (3) | N21—C22—C12 | 114.5 (2) |
C12—N11—H11 | 118.4 | C23—C22—C12 | 121.9 (2) |
C16—N11—H11 | 118.4 | C22—C23—C24 | 118.5 (3) |
N11—C12—C13 | 118.5 (3) | C22—C23—H23 | 120.8 |
N11—C12—C22 | 116.6 (2) | C24—C23—H23 | 120.8 |
C13—C12—C22 | 125.0 (3) | C25—C24—C23 | 118.7 (3) |
C12—C13—C14 | 119.5 (3) | C25—C24—H24 | 120.6 |
C12—C13—H13 | 120.3 | C23—C24—H24 | 120.6 |
C14—C13—H13 | 120.3 | C24—C25—C26 | 118.5 (3) |
C13—C14—C15 | 120.2 (3) | C24—C25—H25 | 120.7 |
C13—C14—H14 | 119.9 | C26—C25—H25 | 120.7 |
C15—C14—H14 | 119.9 | N21—C26—C25 | 123.7 (3) |
C16—C15—C14 | 118.8 (3) | N21—C26—H26 | 118.2 |
C16—C15—H15 | 120.6 | C25—C26—H26 | 118.2 |
C14—C15—H15 | 120.6 | O2—Cl1—O4 | 109.28 (16) |
N11—C16—C15 | 119.9 (3) | O2—Cl1—O3 | 109.86 (15) |
N11—C16—H16 | 120.1 | O4—Cl1—O3 | 110.53 (18) |
C15—C16—H16 | 120.1 | O2—Cl1—O1 | 109.47 (15) |
C22—N21—C26 | 117.0 (2) | O4—Cl1—O1 | 108.43 (16) |
N21—C22—C23 | 123.5 (3) | O3—Cl1—O1 | 109.26 (16) |
C16—N11—C12—C13 | 0.5 (4) | N11—C12—C22—N21 | −14.6 (4) |
C16—N11—C12—C22 | 179.3 (2) | N11—C12—C22—C23 | 166.0 (3) |
N11—C12—C13—C14 | −0.1 (4) | C13—C12—C22—N21 | 164.1 (3) |
C22—C12—C13—C14 | −178.8 (3) | C13—C12—C22—C23 | −15.3 (4) |
C12—C13—C14—C15 | −0.4 (5) | N21—C22—C23—C24 | −2.2 (5) |
C13—C14—C15—C16 | 0.5 (5) | C12—C22—C23—C24 | 177.2 (3) |
C12—N11—C16—C15 | −0.4 (5) | C22—C23—C24—C25 | 1.7 (5) |
C14—C15—C16—N11 | −0.1 (4) | C23—C24—C25—C26 | 0.1 (4) |
C26—N21—C22—C23 | 0.7 (4) | C22—N21—C26—C25 | 1.3 (4) |
C26—N21—C22—C12 | −178.7 (3) | C24—C25—C26—N21 | −1.7 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11···O1 | 0.88 | 2.11 | 2.902 (6) | 150 |
C13—H13···O4i | 0.95 | 2.51 | 3.328 (7) | 144 |
C14—H14···O3ii | 0.95 | 2.57 | 3.375 (7) | 142 |
C15—H15···O2ii | 0.95 | 2.57 | 3.365 (6) | 141 |
C16—H16···O3 | 0.95 | 2.52 | 3.289 (6) | 139 |
Symmetry codes: (i) x−1, y, z+1; (ii) x−1, −y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C10H9N2+·ClO4− |
Mr | 256.64 |
Crystal system, space group | Monoclinic, Pc |
Temperature (K) | 120 |
a, b, c (Å) | 5.958 (4), 12.854 (4), 7.060 (11) |
β (°) | 100.26 (7) |
V (Å3) | 532.0 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.36 |
Crystal size (mm) | 0.18 × 0.12 × 0.02 |
Data collection | |
Diffractometer | Bruker Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.954, 0.993 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6904, 2313, 2035 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.115, 1.07 |
No. of reflections | 2313 |
No. of parameters | 155 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.46, −0.46 |
Absolute structure | Flack (1983), with 1086 Friedel pairs |
Absolute structure parameter | 0.03 (16) |
Computer programs: COLLECT (Hooft, 1999), DENZO (Otwinowski & Minor, 1997) and COLLECT, DENZO and COLLECT, OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
Cl1—O1 | 1.452 (3) | Cl1—O3 | 1.439 (2) |
Cl1—O2 | 1.433 (2) | Cl1—O4 | 1.438 (3) |
C12—N11—C16 | 123.3 (3) | C22—N21—C26 | 117.0 (2) |
N11—C12—C22—N21 | −14.6 (4) | C13—C12—C22—N21 | 164.1 (3) |
N11—C12—C22—C23 | 166.0 (3) | C13—C12—C22—C23 | −15.3 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11···O1 | 0.88 | 2.11 | 2.902 (6) | 150 |
C13—H13···O4i | 0.95 | 2.51 | 3.328 (7) | 144 |
C14—H14···O3ii | 0.95 | 2.57 | 3.375 (7) | 142 |
C15—H15···O2ii | 0.95 | 2.57 | 3.365 (6) | 141 |
C16—H16···O3 | 0.95 | 2.52 | 3.289 (6) | 139 |
Symmetry codes: (i) x−1, y, z+1; (ii) x−1, −y, z+1/2. |
Acknowledgements
The X-ray data were collected at the EPSRC X-ray Crystallographic Service, University of Southampton, England; the authors thank the staff for all their help and advice.
References
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The structure of the title compound, (I), was determined many years ago (Lipkowski et al., 1976); using diffraction data collected at ambient temperature, the structure was refined only to R = 0.072. We have now redetermined this structure using diffraction data collected at 120 K, and we report here a more precise determination, together with the interesting supramolecular structure of this compound. The space group and unit-cell dimensions confirm that the previous study and the present work involve the same phase.
The title compound (Fig. 1) is a salt, and in the selected asymmetric unit, the two ions are linked by an N—H···O hydrogen bond. In the cation, the dihedral angle between the two ring planes is 14.96 (15)°, similar to the 16.6° reported earlier for the ambient-temperature structure (Lipkowski et al., 1976). In addition, there is a significant difference in the C—N—C angles at the protonated atom N11 and the unprotonated atom N21 (Table 1). In the anion, the Cl—O distance involving atom O1 is somewhat longer than the other Cl—O distances, possibly reflecting some modest localization of the negative charge.
In addition to the N—H···O hydrogen bond, involving the more negative atom O1 as the acceptor, there are a number of independent C—H···O hydrogen bonds (Table 2). Although these all have fairly long H···O distances, they all appear to have some structural significance, including the effective tethering of the perchlorate anion, for which the anisotropic displacement parameters give no indication of significant libration, far less of the type of disorder for which this anion is notorious. Hence we conclude that these interactions are significant. All of the hydrogen bonds involve donors in the protonated pyridinium ring, leading to more acidic X—H bonds (X = C or N), and all four O atoms of the anion act as acceptors, so precluding any significant librational motion for the anion.
The C—H···O hydrogen bond involving atom C16 as the donor reinforces the N—H···O hydrogen bond in linking together the two independent ions, so forming an R22(7) motif, and the combination of this and the interaction having atom C13 as the donor then generates by translation a C22(8)C22(9)[R22(7)] chain of rings running parallel to the [101] direction (Fig. 2). The two hydrogen bonds having atoms C14 and C15 as the donors act cooperatively to form a zigzag chain of edge-fused rings running parallel to the [201] direction and generated by the c-glide plane at y = 0 (Fig. 3). The combination of the [101] and [201] chains then generates a complex (010) sheet.