organic compounds
Three-dimensional supramolecular structures in (E,E)-N,N′-bis(4-nitrobenzylidene)butane-1,4-diamine and (E,E)-N,N′-bis(4-nitrobenzylidene)hexane-1,6-diamine
aSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland, bDepartment of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen AB24 3UE, Scotland, and cInstituto de Química, Departamento de Química Inorgânica, Universidade Federal do Rio de Janeiro, 21945-970 Rio de Janeiro, RJ, Brazil
*Correspondence e-mail: cg@st-andrews.ac.uk
In both (E,E)-N,N′-bis(4-nitrobenzylidene)butane-1,4-diamine, C18H18N4O4, (III), and (E,E)-N,N′-bis(4-nitrobenzylidene)hexane-1,6-diamine, C20H22N4O4, (IV), the molecules lie across centres of inversion in space groups P and P21/c, respectively. In (III), the three-dimensional supramolecular structure is built from π-stacked chains of edge-fused R22(30) rings, while in (IV), chains of edge-fused R22(38) rings are linked by dipolar nitro–nitro interactions.
Comment
In this paper, we describe the structures of two compounds in the series 4-O2NC6H4CH=N–(CH2)n–N=CHC6H4NO2, viz. for n = 4, compound (III), or n = 6, compound (IV) (see scheme). We have recently reported the molecular and supramolecular structures of N,N′-bis(4-nitrobenzylidene)ethane-1,2-diamine, (II), where n = 2 (Bomfim et al., 2005). The molecules of (II), which lie across centres of inversion in the P21/n, are linked into sheets by a single C—H⋯O hydrogen bond, and these sheets are further linked by an aromatic π–π stacking interaction. By contrast, in (E,E)-1-(3-nitrophenyl)-4-(4-nitrophenyl)-2,3-diaza-1,3-butadiene, (I), where there are no methylene groups between the two –CH=N– units, the centrosymmetric molecules are linked directly into a three-dimensional framework structure by means of two independent C—H⋯O hydrogen bonds (Glidewell et al., 2006). Intrigued by the differences in the aggregation patterns of these two compounds, we have now undertaken a more extended study involving compounds (III) and (IV), and report their structures here.
Compounds (I)–(IV) all lie across centres of inversion and all have the E,E configuration at the C=N double bonds. In each of compounds (III) and (IV) (Figs. 1 and 2), the reference molecule was selected, for the sake of convenience, as that centred across () in the space groups P and P21/c, respectively.
In each of compounds (II)–(IV), the nitro groups are essentially coplanar with the adjacent aryl rings, as shown by the relevant torsion angles (Table 1) and, likewise, the C1—C11—N11—C12 fragments are effectively coplanar with these rings. However, the skeletons in the polymethylene spacer units adopt conformations which are very far from planar.
In compound (III) (Fig. 1), the molecules are linked into chains of edge-fused rings, which can alternatively be described as molecular ladders, by a single C—H⋯O hydrogen bond (Table 2), and these chains are further linked into a three-dimensional framework by two independent π–π stacking interactions. The methine C11 atoms at (x, y, z) and (1 − x, 1 − y, 1 − z) are parts of the molecule centred at (). These atoms act as hydrogen-bond donors to the nitro atoms O42 at (x, y, 1 + z) and (1 − x, 1 − y, −z), respectively, which themselves are parts of the molecules centred at () and (), respectively. Propagation by translation and inversion of this single hydrogen bond then generates a chain of edge-fused R22(30) rings (Bernstein et al., 1995) running along () (Fig. 3).
The aryl rings at (x, y, z) and (−x, 1 − y, −z), which form parts of molecules centred at () and (), are strictly parallel, with an interplanar spacing of 3.738 (2) Å; the centroid separation is 3.377 (2) Å, corresponding to a ring offset of 1.602 (2) Å. Propagation by inversion of this stacking interaction then generates a chain running parallel to the [101] direction (Fig. 4). Similarly, the rings at (x, y, z) and (−x, 2 − y, −z) are parallel, with an interplanar spacing of 3.630 (2) Å, and a centroid separation and offset of 3.378 (2) and 1.327 (2) Å, respectively. This stacking interaction generates a chain parallel to the [11] direction (Fig. 5). The combination of the [001], [101] and [11] chains suffices to link all of the molecules into a single three-dimensional structure.
In compound (IV) (Fig. 2), the molecules are linked by a single C—H⋯O hydrogen bond (Table 2), but aromatic π–π stacking interactions are absent from the structure. Instead, the hydrogen-bonded chains are linked, again into a three-dimensional structure, by a single dipolar nitro–nitro interaction. The aryl C2 atoms at (x, y, z) and (1 − x, 1 − y, 1 − z) act as hydrogen-bond donors to nitro atoms O42 at (−1 + x, −1 + y, z) and (2 − x, 2 − y, 1 − z), which are themselves parts of the molecules centred at () and (), respectively. Propagation of this single hydrogen bond thus generates a chain of edge-fused R22(38) rings running parallel to the [110] direction (Fig. 6).
Nitro atom O41 at (x, y, z) forms a short dipolar contact with nitro atom N4 at (3 − x, + y, − z); the dimensions of this contact are N⋯O = 2.893 (2) Å, N—O⋯N = 117.2 (2)° and O⋯N—C = 118.4 (2)°; so that it is somewhat reminiscent of the type I (perpendicular) dipolar carbonyl–carbonyl interaction (Allen et al., 1998). In this manner, the molecule centred at () acts as donor to the molecules centred at (), and () and as acceptor from those centred at () and (), so generating a (04) sheet in the form of a (4,4)-net built from a single type of R44(46) ring (Starbuck et al., 1999) (Fig. 7). The combination of these sheets and the hydrogen-bonded [110] chains links all the molecules into a single three-dimensional framework.
Hence, although compounds (I)–(IV) all form three-dimensional supramolecular structures, no two exhibit the same range of direction-specific intermolecular interactions, and the details of the framework formation are different for each.
Experimental
A solution of 4-nitrobenzaldehyde (8 mmol) and 1,4-diaminobutane (4 mmol) in methanol (25 ml) was heated under reflux for 30 min. After cooling, the solvent was removed under reduced pressure and the product was recrystallized from methanol–1,2-dichloroethane (1:1 v/v) to yield crystals of (III) suitable for single-crystal X-ray diffraction (m.p. 438–439 K). Compound (IV) was prepared in a similar way from 4-nitrobenzaldehyde and 1,6-diaminohexane, but it was recrystallized from 1,2-dichloroethane (m.p. 408–410 K).
Compound (III)
Crystal data
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Compound (IV)
Crystal data
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Crystals of compound (III) are triclinic. The P was selected and confirmed by the subsequent structure analysis. For compound (IV), the P21/c was uniquely determined from the All H atoms were located in difference maps and then treated as riding atoms, with C—H distances of 0.95 or 0.99 Å, and with Uiso(H) = 1.2Ueq(C).
For both compounds, data collection: COLLECT (Nonius, 1998); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S0108270105035766/sk1882sup1.cif
contains datablocks global, III, IV. DOI:Structure factors: contains datablock III. DOI: 10.1107/S0108270105035766/sk1882IIIsup2.hkl
Structure factors: contains datablock IV. DOI: 10.1107/S0108270105035766/sk1882IVsup3.hkl
A solution of 4-nitrobenzaldehyde (8 mmol) and 1,4-diaminobutane (4 mmol) in methanol (25 ml) was heated under reflux for 30 min. After cooling, the solvent was removed under reduced pressure and the resulting solid product was recrystallized from methanol–1,2-dichloroethane (1:1 v/v) to yield crystals of compound (III) suitable for single-crystal X-ray diffraction (m.p. 438–439 K). Compound (IV) was prepared in a similar way from 4-nitrobenzaldehyde and 1,6-diaminohexane, but it was recrystallized from 1,2-dichloroethane (m.p. 408–410 K).
Crystals of compound (III) are triclinic. The 1 was selected and confirmed by the subsequent structure analysis. For compound (IV), the P21/c was uniquely determined from the All H atoms were located in difference maps and then treated as riding atoms, with C—H distances of 0.95 or 0.99 Å, and with Uiso(H) = 1.2Ueq(C).
PIn this paper, we describe the structures of two compounds in the series 4-O2NC6H4CH═N—(CH2)n—N═CHC6H4NO2, where n = 4, compound (III), or n = 6, compound (IV) (see scheme). We have recently reported the molecular and supramolecular structures of N,N'-bis(4-nitrobenzylidene)ethane-1,2-diamine, (II), where n = 2 (Bomfim et al., 2005). The molecules of (II), which lie across centres of inversion in P21/n, are linked into sheets by a single C—H···O hydrogen bond, and these sheets are further linked by an aromatic π–π stacking interaction. By contrast, in (E,E)-1-(3-nitrophenyl)-4-(4-nitrophenyl)-2,3-diaza-1,3-butadiene, compound (I), where there are no methylene groups between the two –CH═N– units, the centrosymmetric molecules are linked directly into a three-dimensional framework structure by means of two independent C—H···O hydrogen bonds (Glidewell et al., 2006). Intrigued by the differences in the aggregation patterns of these two compounds, we have now undertaken a more extended study involving compounds (III) and (IV), and report their structures here.
Compounds (I)–(IV) all lie across centres of inversion and all have the (E,E) configuration at the C═N double bonds. In each of compounds (III) and (IV) (Figs. 1 and 2), the reference molecule was selected, for the sake of convenience, as that centred across (1/2, 1/2, 1/2), in space groups P1 and P21/c, respectively
In each of compounds (II)–(IV), the nitro groups are essentially co-planar with the adjacent aryl rings, as shown by the relevant torsion angles (Table 1) and, likewise, the C1—C11—N11—C12 fragments are effectively co-planar with these rings. However, the skeletons in the polymethylene spacer units adopt conformations which are very far from planar.
In compound (III) (Fig. 1), the molecules are linked into chains of edge-fused rings, which can alternatively be described as molecular ladders, by a single C—H···O hydrogen bond (Table 2), and these chains are further linked into a three-dimensional framework by two independent π–π stacking interactions. The methine atoms C11 at (x, y, z) and (1 - x, 1 - y, 1 - z) are parts of the molecule centred at (1/2, 1/2, 1/2). These atoms act as hydrogen-bond donors to the nitro atoms O42 at (x, y, 1 + z) and (1 - x, 1 - y, -z), respectively, which themselves are parts of the molecules centred at (1/2, 1/2, 3/2) and (1/2, 1/2, -1/2), respectively. Propagation by translation and inversion of this single hydrogen bond then generates a chain of edge-fused R22(30) rings (Bernstein et al., 1995) running along (1/2, 1/2, z) (Fig. 3).
The aryl rings at (x, y, z) and (-x, 1 - y, -z), which form parts of molecules centred at (1/2, 1/2, 1/2) and (-1/2, 1/2, -1/2), are strictly parallel, with an 11] direction (Fig. 5). The combination of the [001], [101] and [111] chains suffices to link all of the molecules into a single three-dimensional structure.
of 3.738 (2) Å; the centroid separation is 3.377 (2) Å, corresponding to a ring offset of 1.602 (2) Å. Propagation by inversion of this stacking interaction then generates a chain running parallel to the [101] direction (Fig. 4). Similarly, the rings at (x, y, z) and (-x, 2 - y, -z) are parallel, with an of 3.630 (2) °, and a centroid separation and offset of 3.378 (2) and 1.327 (2) Å, respectively. This stacking interaction generates a chain parallel to the [1In compound (IV) (Fig. 2), the molecules are linked by a single C—H···O hydrogen bond (Table 2), but aromatic π–π stacking interactions are absent from the structure. Instead, the hydrogen-bonded chains are linked, again into a three-dimensional structure, by a single dipolar nitro···nitro interaction. The aryl atoms C2 at (x, y, z) and (1 - x, 1 - y, 1 - z) act as hydrogen-bond donors to the nitro atoms O42 at (-1 + x, -1 + y, z) and (2 - x, 2 - y, 1 - z), which are themselves parts of the molecules centred at (-1/2, -1/2, 1/2) and (3/2, 3/2, 1/2), respectively. Propagation of this single hydrogen bond thus generates a chain of edge-fused R22(38) rings running parallel to the [110] direction (Fig. 6).
The nitro atom O41 at (x, y, z) forms a short dipolar contact with the nitro atom N4 at (3 - x, 1/2 + y, 3/2 - z); the dimensions of this contact are N···Oi 2.893 (2) Å, N—O···Ni 117.2 (2)° and O···Ni—Ci 118.4 (2)° [symmetry code: (i) 3 - x, 1/2 + y, 3/2 - z], so that it is somewhat reminiscent of the type I (perpendicular) dipolar carbonyl···carbonyl interaction (Allen et al., 1998). In this manner, the molecule centred at (1/2, 1/2, 1/2) acts as donor to the molecules centred at (5/2, 1, 1) and (-3/2, 0, 0) and as acceptor from those centred at (5/2, 0, 1) and (-3/2, 1, 0), so generating a (104) sheet in the form of a (4,4) net built from a single type of R44(46) ring (Starbuck et al., 1999) (Fig. 7). The combination of these sheets and the hydrogen-bonded [110] chains links all the molecules into a single three-dimensional framework.
Hence, although compounds (I)–(IV) all form three-dimensional supramolecular structures, no two exhibit the same range of direction-specific intermolecular interactions, and the details of the framework formation are different for each.
For both compounds, data collection: COLLECT (Nonius, 1998); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).C18H18N4O4 | Z = 1 |
Mr = 354.36 | F(000) = 186 |
Triclinic, P1 | Dx = 1.414 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.1162 (4) Å | Cell parameters from 1895 reflections |
b = 7.1895 (2) Å | θ = 3.1–27.6° |
c = 9.1695 (4) Å | µ = 0.10 mm−1 |
α = 83.210 (3)° | T = 120 K |
β = 78.920 (2)° | Lath, colourless |
γ = 64.808 (3)° | 0.46 × 0.34 × 0.13 mm |
V = 416.25 (3) Å3 |
Nonius KappaCCD area-detector diffractometer | 1895 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 1589 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.6°, θmin = 3.1° |
φ and ω scans | h = −9→9 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −9→9 |
Tmin = 0.944, Tmax = 0.987 | l = −11→11 |
8689 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.114 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0652P)2 + 0.1082P] where P = (Fo2 + 2Fc2)/3 |
1893 reflections | (Δ/σ)max < 0.001 |
118 parameters | Δρmax = 0.26 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
C18H18N4O4 | γ = 64.808 (3)° |
Mr = 354.36 | V = 416.25 (3) Å3 |
Triclinic, P1 | Z = 1 |
a = 7.1162 (4) Å | Mo Kα radiation |
b = 7.1895 (2) Å | µ = 0.10 mm−1 |
c = 9.1695 (4) Å | T = 120 K |
α = 83.210 (3)° | 0.46 × 0.34 × 0.13 mm |
β = 78.920 (2)° |
Nonius KappaCCD area-detector diffractometer | 1895 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 1589 reflections with I > 2σ(I) |
Tmin = 0.944, Tmax = 0.987 | Rint = 0.028 |
8689 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.114 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.26 e Å−3 |
1893 reflections | Δρmin = −0.34 e Å−3 |
118 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.04942 (18) | 0.76874 (16) | 0.16560 (12) | 0.0166 (3) | |
C2 | −0.16018 (18) | 0.80111 (17) | 0.17853 (12) | 0.0180 (3) | |
C3 | −0.24425 (18) | 0.79419 (17) | 0.05569 (13) | 0.0182 (3) | |
C4 | −0.11310 (18) | 0.75422 (16) | −0.07985 (12) | 0.0164 (3) | |
C5 | 0.09695 (18) | 0.72065 (17) | −0.09719 (12) | 0.0178 (3) | |
C6 | 0.17834 (18) | 0.72778 (17) | 0.02671 (13) | 0.0175 (3) | |
N4 | −0.20026 (16) | 0.74590 (15) | −0.21094 (11) | 0.0187 (2) | |
O41 | −0.38677 (14) | 0.77768 (14) | −0.19416 (10) | 0.0272 (2) | |
O42 | −0.08302 (14) | 0.70788 (14) | −0.33088 (9) | 0.0270 (2) | |
C11 | 0.12746 (18) | 0.78186 (17) | 0.30044 (12) | 0.0176 (3) | |
N11 | 0.30768 (16) | 0.77813 (15) | 0.29785 (11) | 0.0190 (2) | |
C12 | 0.36181 (19) | 0.79103 (18) | 0.44148 (12) | 0.0195 (3) | |
C13 | 0.53546 (19) | 0.58793 (17) | 0.48542 (12) | 0.0188 (3) | |
H2 | −0.2472 | 0.8284 | 0.2730 | 0.022* | |
H3 | −0.3873 | 0.8162 | 0.0645 | 0.022* | |
H5 | 0.1830 | 0.6934 | −0.1920 | 0.021* | |
H6 | 0.3217 | 0.7048 | 0.0174 | 0.021* | |
H11 | 0.0382 | 0.7937 | 0.3936 | 0.021* | |
H12A | 0.2354 | 0.8245 | 0.5187 | 0.023* | |
H12B | 0.4096 | 0.9029 | 0.4353 | 0.023* | |
H13A | 0.6581 | 0.5508 | 0.4048 | 0.023* | |
H13B | 0.5808 | 0.6064 | 0.5762 | 0.023* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0197 (6) | 0.0126 (5) | 0.0176 (5) | −0.0072 (4) | −0.0032 (4) | 0.0016 (4) |
C2 | 0.0188 (6) | 0.0181 (6) | 0.0164 (5) | −0.0086 (5) | 0.0008 (4) | −0.0005 (4) |
C3 | 0.0160 (6) | 0.0171 (5) | 0.0218 (6) | −0.0079 (4) | −0.0023 (4) | 0.0005 (4) |
C4 | 0.0196 (6) | 0.0132 (5) | 0.0170 (5) | −0.0067 (4) | −0.0050 (4) | 0.0010 (4) |
C5 | 0.0185 (6) | 0.0164 (5) | 0.0160 (5) | −0.0065 (5) | 0.0010 (4) | −0.0007 (4) |
C6 | 0.0154 (6) | 0.0161 (6) | 0.0206 (6) | −0.0063 (4) | −0.0025 (4) | 0.0003 (4) |
N4 | 0.0209 (5) | 0.0157 (5) | 0.0192 (5) | −0.0071 (4) | −0.0039 (4) | −0.0003 (4) |
O41 | 0.0204 (5) | 0.0349 (5) | 0.0287 (5) | −0.0114 (4) | −0.0072 (4) | −0.0046 (4) |
O42 | 0.0280 (5) | 0.0335 (5) | 0.0177 (4) | −0.0112 (4) | −0.0020 (4) | −0.0032 (4) |
C11 | 0.0198 (6) | 0.0146 (5) | 0.0163 (5) | −0.0062 (4) | −0.0011 (4) | 0.0005 (4) |
N11 | 0.0201 (5) | 0.0192 (5) | 0.0180 (5) | −0.0081 (4) | −0.0051 (4) | 0.0019 (4) |
C12 | 0.0213 (6) | 0.0209 (6) | 0.0176 (6) | −0.0095 (5) | −0.0037 (4) | −0.0009 (4) |
C13 | 0.0194 (6) | 0.0209 (6) | 0.0178 (5) | −0.0094 (5) | −0.0048 (4) | −0.0002 (4) |
C1—C2 | 1.3914 (16) | N4—O42 | 1.2266 (13) |
C1—C6 | 1.4000 (16) | N4—O41 | 1.2285 (13) |
C1—C11 | 1.4771 (16) | C11—N11 | 1.2670 (16) |
C2—C3 | 1.3880 (16) | C11—H11 | 0.95 |
C2—H2 | 0.95 | N11—C12 | 1.4649 (14) |
C3—C4 | 1.3815 (16) | C12—C13 | 1.5289 (16) |
C3—H3 | 0.95 | C12—H12A | 0.99 |
C4—C5 | 1.3887 (16) | C12—H12B | 0.99 |
C4—N4 | 1.4725 (14) | C13—C13i | 1.528 (2) |
C5—C6 | 1.3859 (16) | C13—H13A | 0.99 |
C5—H5 | 0.95 | C13—H13B | 0.99 |
C6—H6 | 0.95 | ||
C2—C1—C6 | 119.64 (10) | O42—N4—C4 | 118.32 (10) |
C2—C1—C11 | 118.19 (10) | O41—N4—C4 | 118.13 (9) |
C6—C1—C11 | 122.17 (11) | N11—C11—C1 | 123.15 (10) |
C3—C2—C1 | 121.08 (10) | N11—C11—H11 | 118.4 |
C3—C2—H2 | 119.5 | C1—C11—H11 | 118.4 |
C1—C2—H2 | 119.5 | C11—N11—C12 | 116.39 (10) |
C4—C3—C2 | 117.85 (11) | N11—C12—C13 | 110.93 (9) |
C4—C3—H3 | 121.1 | N11—C12—H12A | 109.5 |
C2—C3—H3 | 121.1 | C13—C12—H12A | 109.5 |
C3—C4—C5 | 122.77 (10) | N11—C12—H12B | 109.5 |
C3—C4—N4 | 118.37 (10) | C13—C12—H12B | 109.5 |
C5—C4—N4 | 118.86 (10) | H12A—C12—H12B | 108.0 |
C6—C5—C4 | 118.60 (10) | C13i—C13—C12 | 112.57 (12) |
C6—C5—H5 | 120.7 | C13i—C13—H13A | 109.1 |
C4—C5—H5 | 120.7 | C12—C13—H13A | 109.1 |
C5—C6—C1 | 120.06 (11) | C13i—C13—H13B | 109.1 |
C5—C6—H6 | 120.0 | C12—C13—H13B | 109.1 |
C1—C6—H6 | 120.0 | H13A—C13—H13B | 107.8 |
O42—N4—O41 | 123.55 (10) | ||
C6—C1—C2—C3 | −0.22 (17) | C3—C4—N4—O42 | −179.11 (10) |
C11—C1—C2—C3 | 178.97 (10) | C5—C4—N4—O42 | 0.55 (15) |
C1—C2—C3—C4 | −0.03 (16) | C3—C4—N4—O41 | 0.96 (15) |
C2—C3—C4—C5 | 0.18 (17) | C5—C4—N4—O41 | −179.38 (10) |
C2—C3—C4—N4 | 179.83 (9) | C2—C1—C11—N11 | −171.77 (10) |
C3—C4—C5—C6 | −0.08 (17) | C6—C1—C11—N11 | 7.40 (17) |
N4—C4—C5—C6 | −179.72 (9) | C1—C11—N11—C12 | −179.54 (9) |
C4—C5—C6—C1 | −0.19 (16) | C11—N11—C12—C13 | 111.42 (11) |
C2—C1—C6—C5 | 0.33 (16) | N11—C12—C13—C13i | −65.67 (15) |
C11—C1—C6—C5 | −178.83 (10) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11···O42ii | 0.95 | 2.60 | 3.502 (2) | 159 |
Symmetry code: (ii) x, y, z+1. |
C20H22N4O4 | F(000) = 404 |
Mr = 382.42 | Dx = 1.373 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2083 reflections |
a = 6.1908 (3) Å | θ = 3.3–27.6° |
b = 4.9761 (2) Å | µ = 0.10 mm−1 |
c = 30.1095 (15) Å | T = 120 K |
β = 94.331 (3)° | Lath, colourless |
V = 924.91 (7) Å3 | 0.44 × 0.30 × 0.12 mm |
Z = 2 |
Nonius KappaCCD area-detector diffractometer | 2083 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 1516 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.6°, θmin = 3.3° |
φ and ω scans | h = −8→7 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −6→6 |
Tmin = 0.952, Tmax = 0.988 | l = −31→39 |
7409 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.113 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0532P)2 + 0.2054P] where P = (Fo2 + 2Fc2)/3 |
2083 reflections | (Δ/σ)max = 0.001 |
127 parameters | Δρmax = 0.19 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C20H22N4O4 | V = 924.91 (7) Å3 |
Mr = 382.42 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.1908 (3) Å | µ = 0.10 mm−1 |
b = 4.9761 (2) Å | T = 120 K |
c = 30.1095 (15) Å | 0.44 × 0.30 × 0.12 mm |
β = 94.331 (3)° |
Nonius KappaCCD area-detector diffractometer | 2083 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 1516 reflections with I > 2σ(I) |
Tmin = 0.952, Tmax = 0.988 | Rint = 0.041 |
7409 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.113 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.19 e Å−3 |
2083 reflections | Δρmin = −0.30 e Å−3 |
127 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 1.0614 (2) | 0.6700 (3) | 0.63857 (5) | 0.0180 (3) | |
C2 | 0.9798 (2) | 0.7860 (3) | 0.67597 (5) | 0.0195 (3) | |
C3 | 1.0927 (2) | 0.9893 (3) | 0.69923 (5) | 0.0195 (3) | |
C4 | 1.2888 (2) | 1.0703 (3) | 0.68471 (5) | 0.0172 (3) | |
C5 | 1.3742 (2) | 0.9581 (3) | 0.64772 (5) | 0.0216 (4) | |
C6 | 1.2599 (2) | 0.7585 (3) | 0.62471 (5) | 0.0214 (4) | |
N4 | 1.41049 (19) | 1.2853 (3) | 0.70893 (4) | 0.0190 (3) | |
O41 | 1.32987 (17) | 1.3916 (2) | 0.74050 (3) | 0.0251 (3) | |
O42 | 1.58791 (17) | 1.3487 (2) | 0.69620 (3) | 0.0266 (3) | |
C11 | 0.9388 (2) | 0.4543 (3) | 0.61428 (5) | 0.0192 (3) | |
N11 | 0.99326 (19) | 0.3625 (3) | 0.57753 (4) | 0.0212 (3) | |
C12 | 0.8611 (2) | 0.1507 (3) | 0.55614 (5) | 0.0217 (4) | |
C13 | 0.7409 (2) | 0.2517 (3) | 0.51322 (5) | 0.0203 (4) | |
C14 | 0.5605 (2) | 0.4499 (3) | 0.52148 (5) | 0.0209 (4) | |
H2 | 0.8456 | 0.7255 | 0.6856 | 0.023* | |
H3 | 1.0365 | 1.0705 | 0.7245 | 0.023* | |
H5 | 1.5093 | 1.0180 | 0.6384 | 0.026* | |
H6 | 1.3162 | 0.6803 | 0.5992 | 0.026* | |
H11 | 0.8147 | 0.3819 | 0.6267 | 0.023* | |
H12A | 0.7550 | 0.0867 | 0.5768 | 0.026* | |
H12B | 0.9547 | −0.0028 | 0.5493 | 0.026* | |
H13A | 0.8457 | 0.3398 | 0.4947 | 0.024* | |
H13B | 0.6780 | 0.0961 | 0.4963 | 0.024* | |
H14A | 0.6234 | 0.6058 | 0.5383 | 0.025* | |
H14B | 0.4560 | 0.3620 | 0.5401 | 0.025* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0193 (7) | 0.0185 (8) | 0.0158 (7) | −0.0004 (6) | −0.0016 (6) | 0.0025 (6) |
C2 | 0.0183 (7) | 0.0213 (8) | 0.0191 (7) | −0.0021 (6) | 0.0023 (6) | 0.0010 (6) |
C3 | 0.0208 (8) | 0.0208 (8) | 0.0171 (7) | 0.0006 (7) | 0.0035 (6) | −0.0006 (6) |
C4 | 0.0187 (7) | 0.0161 (8) | 0.0163 (7) | −0.0009 (6) | −0.0024 (6) | 0.0016 (6) |
C5 | 0.0175 (7) | 0.0271 (9) | 0.0204 (7) | −0.0032 (7) | 0.0029 (6) | 0.0013 (7) |
C6 | 0.0221 (8) | 0.0242 (8) | 0.0183 (7) | 0.0008 (7) | 0.0046 (6) | −0.0022 (6) |
N4 | 0.0197 (6) | 0.0176 (7) | 0.0193 (6) | −0.0005 (5) | −0.0001 (5) | 0.0025 (5) |
O41 | 0.0270 (6) | 0.0239 (6) | 0.0245 (6) | −0.0008 (5) | 0.0031 (5) | −0.0064 (5) |
O42 | 0.0227 (6) | 0.0299 (7) | 0.0276 (6) | −0.0100 (5) | 0.0043 (5) | 0.0002 (5) |
C11 | 0.0197 (7) | 0.0186 (8) | 0.0193 (7) | −0.0018 (6) | 0.0010 (6) | 0.0021 (6) |
N11 | 0.0217 (7) | 0.0225 (7) | 0.0191 (6) | −0.0023 (6) | −0.0012 (5) | −0.0026 (6) |
C12 | 0.0238 (8) | 0.0194 (8) | 0.0222 (8) | −0.0005 (7) | 0.0027 (6) | −0.0034 (7) |
C13 | 0.0213 (8) | 0.0213 (8) | 0.0185 (7) | −0.0038 (7) | 0.0023 (6) | −0.0041 (6) |
C14 | 0.0226 (8) | 0.0217 (9) | 0.0184 (7) | −0.0036 (6) | 0.0020 (6) | −0.0033 (6) |
C1—C2 | 1.394 (2) | N4—O42 | 1.2315 (15) |
C1—C6 | 1.398 (2) | C11—N11 | 1.2663 (18) |
C1—C11 | 1.476 (2) | C11—H11 | 0.95 |
C2—C3 | 1.389 (2) | N11—C12 | 1.4546 (19) |
C2—H2 | 0.95 | C12—C13 | 1.527 (2) |
C3—C4 | 1.381 (2) | C12—H12A | 0.99 |
C3—H3 | 0.95 | C12—H12B | 0.99 |
C4—C5 | 1.386 (2) | C13—C14 | 1.524 (2) |
C4—N4 | 1.4698 (19) | C13—H13A | 0.99 |
C5—C6 | 1.376 (2) | C13—H13B | 0.99 |
C5—H5 | 0.95 | C14—C14i | 1.528 (3) |
C6—H6 | 0.95 | C14—H14A | 0.99 |
N4—O41 | 1.2265 (15) | C14—H14B | 0.99 |
C2—C1—C6 | 119.38 (14) | N11—C11—H11 | 118.8 |
C2—C1—C11 | 119.83 (13) | C1—C11—H11 | 118.8 |
C6—C1—C11 | 120.79 (13) | C11—N11—C12 | 118.07 (13) |
C3—C2—C1 | 120.68 (14) | N11—C12—C13 | 110.98 (13) |
C3—C2—H2 | 119.7 | N11—C12—H12A | 109.4 |
C1—C2—H2 | 119.7 | C13—C12—H12A | 109.4 |
C4—C3—C2 | 118.28 (13) | N11—C12—H12B | 109.4 |
C4—C3—H3 | 120.9 | C13—C12—H12B | 109.4 |
C2—C3—H3 | 120.9 | H12A—C12—H12B | 108.0 |
C3—C4—C5 | 122.31 (14) | C14—C13—C12 | 113.04 (12) |
C3—C4—N4 | 119.02 (13) | C14—C13—H13A | 109.0 |
C5—C4—N4 | 118.66 (13) | C12—C13—H13A | 109.0 |
C6—C5—C4 | 118.85 (14) | C14—C13—H13B | 109.0 |
C6—C5—H5 | 120.6 | C12—C13—H13B | 109.0 |
C4—C5—H5 | 120.6 | H13A—C13—H13B | 107.8 |
C5—C6—C1 | 120.49 (14) | C13—C14—C14i | 113.03 (15) |
C5—C6—H6 | 119.8 | C13—C14—H14A | 109.0 |
C1—C6—H6 | 119.8 | C14i—C14—H14A | 109.0 |
O41—N4—O42 | 123.74 (13) | C13—C14—H14B | 109.0 |
O41—N4—C4 | 118.37 (12) | C14i—C14—H14B | 109.0 |
O42—N4—C4 | 117.89 (12) | H14A—C14—H14B | 107.8 |
N11—C11—C1 | 122.31 (14) | ||
C6—C1—C2—C3 | 0.5 (2) | C3—C4—N4—O41 | −2.3 (2) |
C11—C1—C2—C3 | −179.95 (13) | C5—C4—N4—O41 | 176.99 (13) |
C1—C2—C3—C4 | −0.9 (2) | C3—C4—N4—O42 | 177.87 (13) |
C2—C3—C4—C5 | 0.7 (2) | C5—C4—N4—O42 | −2.8 (2) |
C2—C3—C4—N4 | 179.98 (13) | C2—C1—C11—N11 | 172.20 (15) |
C3—C4—C5—C6 | −0.1 (2) | C6—C1—C11—N11 | −8.3 (2) |
N4—C4—C5—C6 | −179.41 (13) | C1—C11—N11—C12 | −179.72 (12) |
C4—C5—C6—C1 | −0.3 (2) | C11—N11—C12—C13 | 111.90 (15) |
C2—C1—C6—C5 | 0.1 (2) | N11—C12—C13—C14 | −70.53 (15) |
C11—C1—C6—C5 | −179.45 (14) | C12—C13—C14—C14i | −179.76 (15) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O42ii | 0.95 | 2.50 | 3.3491 (18) | 149 |
Symmetry code: (ii) x−1, y−1, z. |
Experimental details
(III) | (IV) | |
Crystal data | ||
Chemical formula | C18H18N4O4 | C20H22N4O4 |
Mr | 354.36 | 382.42 |
Crystal system, space group | Triclinic, P1 | Monoclinic, P21/c |
Temperature (K) | 120 | 120 |
a, b, c (Å) | 7.1162 (4), 7.1895 (2), 9.1695 (4) | 6.1908 (3), 4.9761 (2), 30.1095 (15) |
α, β, γ (°) | 83.210 (3), 78.920 (2), 64.808 (3) | 90, 94.331 (3), 90 |
V (Å3) | 416.25 (3) | 924.91 (7) |
Z | 1 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.10 |
Crystal size (mm) | 0.46 × 0.34 × 0.13 | 0.44 × 0.30 × 0.12 |
Data collection | ||
Diffractometer | Nonius KappaCCD area-detector | Nonius KappaCCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.944, 0.987 | 0.952, 0.988 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8689, 1895, 1589 | 7409, 2083, 1516 |
Rint | 0.028 | 0.041 |
(sin θ/λ)max (Å−1) | 0.651 | 0.651 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.114, 1.05 | 0.045, 0.113, 1.06 |
No. of reflections | 1893 | 2083 |
No. of parameters | 118 | 127 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.34 | 0.19, −0.30 |
Computer programs: COLLECT (Nonius, 1998), DENZO (Otwinowski & Minor, 1997) and COLLECT, DENZO and COLLECT, OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
Parameter | (II) | (III) | (IV) |
C3-C4-N4-O41 | -5.86 (15) | 0.96 (15) | -2.3 (2) |
C2-C1-C11-N11 | 177.91 (9) | -171.77 (10) | 172.20 (15) |
C1-C11-N11-C12 | -176.58 (8) | -179.54 (9) | -179.72 (12) |
C11-N11-C12-C12i | 118.31 (13) | ||
C11-N11-C12-C13 | 111.42 (11) | 111.90 (15) | |
N11-C12-C13-C13i | -65.67 (15) | ||
N11-C12-C13-C14 | -70.53 (15) | ||
C12-C13-C14-C14i | -179.76 (15) |
Symmetry code: (i) 1 - x, 1 - y, 1 - z. Data for compound (II) from Bomfim et al. (2005). |
Compound | D-H···A | D-H | H···A | D···A | D-H···A |
(III) | C11-H11···O42i | 0.95 | 2.60 | 3.502 (2) | 159 |
(IV) | C2-H2···O42ii | 0.95 | 2.50 | 3.349 (2) | 149 |
Symmetry codes: (i) x, y, 1 + z; (ii) -1 + x, -1 + y, z. |
Acknowledgements
The X-ray data were collected at the EPSRC X-ray Crystallographic Service, University of Southampton; the authors thank the staff for all their help and advice. JLW thanks CNPq and FAPERJ for financial support.
References
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In this paper, we describe the structures of two compounds in the series 4-O2NC6H4CH═N—(CH2)n—N═CHC6H4NO2, where n = 4, compound (III), or n = 6, compound (IV) (see scheme). We have recently reported the molecular and supramolecular structures of N,N'-bis(4-nitrobenzylidene)ethane-1,2-diamine, (II), where n = 2 (Bomfim et al., 2005). The molecules of (II), which lie across centres of inversion in space group P21/n, are linked into sheets by a single C—H···O hydrogen bond, and these sheets are further linked by an aromatic π–π stacking interaction. By contrast, in (E,E)-1-(3-nitrophenyl)-4-(4-nitrophenyl)-2,3-diaza-1,3-butadiene, compound (I), where there are no methylene groups between the two –CH═N– units, the centrosymmetric molecules are linked directly into a three-dimensional framework structure by means of two independent C—H···O hydrogen bonds (Glidewell et al., 2006). Intrigued by the differences in the aggregation patterns of these two compounds, we have now undertaken a more extended study involving compounds (III) and (IV), and report their structures here.
Compounds (I)–(IV) all lie across centres of inversion and all have the (E,E) configuration at the C═N double bonds. In each of compounds (III) and (IV) (Figs. 1 and 2), the reference molecule was selected, for the sake of convenience, as that centred across (1/2, 1/2, 1/2), in space groups P1 and P21/c, respectively
In each of compounds (II)–(IV), the nitro groups are essentially co-planar with the adjacent aryl rings, as shown by the relevant torsion angles (Table 1) and, likewise, the C1—C11—N11—C12 fragments are effectively co-planar with these rings. However, the skeletons in the polymethylene spacer units adopt conformations which are very far from planar.
In compound (III) (Fig. 1), the molecules are linked into chains of edge-fused rings, which can alternatively be described as molecular ladders, by a single C—H···O hydrogen bond (Table 2), and these chains are further linked into a three-dimensional framework by two independent π–π stacking interactions. The methine atoms C11 at (x, y, z) and (1 - x, 1 - y, 1 - z) are parts of the molecule centred at (1/2, 1/2, 1/2). These atoms act as hydrogen-bond donors to the nitro atoms O42 at (x, y, 1 + z) and (1 - x, 1 - y, -z), respectively, which themselves are parts of the molecules centred at (1/2, 1/2, 3/2) and (1/2, 1/2, -1/2), respectively. Propagation by translation and inversion of this single hydrogen bond then generates a chain of edge-fused R22(30) rings (Bernstein et al., 1995) running along (1/2, 1/2, z) (Fig. 3).
The aryl rings at (x, y, z) and (-x, 1 - y, -z), which form parts of molecules centred at (1/2, 1/2, 1/2) and (-1/2, 1/2, -1/2), are strictly parallel, with an interplanar spacing of 3.738 (2) Å; the centroid separation is 3.377 (2) Å, corresponding to a ring offset of 1.602 (2) Å. Propagation by inversion of this stacking interaction then generates a chain running parallel to the [101] direction (Fig. 4). Similarly, the rings at (x, y, z) and (-x, 2 - y, -z) are parallel, with an interplanar spacing of 3.630 (2) °, and a centroid separation and offset of 3.378 (2) and 1.327 (2) Å, respectively. This stacking interaction generates a chain parallel to the [111] direction (Fig. 5). The combination of the [001], [101] and [111] chains suffices to link all of the molecules into a single three-dimensional structure.
In compound (IV) (Fig. 2), the molecules are linked by a single C—H···O hydrogen bond (Table 2), but aromatic π–π stacking interactions are absent from the structure. Instead, the hydrogen-bonded chains are linked, again into a three-dimensional structure, by a single dipolar nitro···nitro interaction. The aryl atoms C2 at (x, y, z) and (1 - x, 1 - y, 1 - z) act as hydrogen-bond donors to the nitro atoms O42 at (-1 + x, -1 + y, z) and (2 - x, 2 - y, 1 - z), which are themselves parts of the molecules centred at (-1/2, -1/2, 1/2) and (3/2, 3/2, 1/2), respectively. Propagation of this single hydrogen bond thus generates a chain of edge-fused R22(38) rings running parallel to the [110] direction (Fig. 6).
The nitro atom O41 at (x, y, z) forms a short dipolar contact with the nitro atom N4 at (3 - x, 1/2 + y, 3/2 - z); the dimensions of this contact are N···Oi 2.893 (2) Å, N—O···Ni 117.2 (2)° and O···Ni—Ci 118.4 (2)° [symmetry code: (i) 3 - x, 1/2 + y, 3/2 - z], so that it is somewhat reminiscent of the type I (perpendicular) dipolar carbonyl···carbonyl interaction (Allen et al., 1998). In this manner, the molecule centred at (1/2, 1/2, 1/2) acts as donor to the molecules centred at (5/2, 1, 1) and (-3/2, 0, 0) and as acceptor from those centred at (5/2, 0, 1) and (-3/2, 1, 0), so generating a (104) sheet in the form of a (4,4) net built from a single type of R44(46) ring (Starbuck et al., 1999) (Fig. 7). The combination of these sheets and the hydrogen-bonded [110] chains links all the molecules into a single three-dimensional framework.
Hence, although compounds (I)–(IV) all form three-dimensional supramolecular structures, no two exhibit the same range of direction-specific intermolecular interactions, and the details of the framework formation are different for each.