organic compounds
5-Fluorouracil and thymine form a crystalline solid solution
aChristopher Ingold Laboratory, Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, England
*Correspondence e-mail: a.hulme@ucl.ac.uk
The H,3H)-dione–5-methylpyrimidine-2,4(1H,3H)-dione, C4H3FN2O2·C5H6N2O2] has been determined. Both of the crystallographically independent sites can accommodate either 5-fluorouracil or thymine molecules, leading to occupational disorder [C5−xH6–3xFxN2O2·C5−yH6−3xFyN2O2, with x = 0.52 and y = 0.7 for determination (I), x = 0.55 and y = 0.69 for (II), and x = 0.67 and y = 0.76 for (III)]. The 5-fluorouracil–thymine ratio in the is influenced by the 5-fluorouracil–thymine ratio in the crystallization solution, though it does not exactly mirror it. The comprises interpenetrating hydrogen-bonded nets, containing four independent hydrogen bonds.
of a 5-fluorouracil–thymine [5-fluoropyrimidine-2,4(1Comment
F atoms and methyl groups have been identified as being capable of replacing one another in a molecule to produce isomorphic crystal structures because of their similar size, shape and van der Waals interactions (Kuhnert-Brandstatter, 1982). Attempts were made to exploit this interchangeability as part of an ongoing study into the crystalline solid state of 5-fluorouracil (Hulme et al., 2005; Hamad et al., 2006), with the aim of growing 5-fluorouracil crystals isostructural with thymine (Portalone et al., 1999) or thymine crystals isostructural with 5-fluorouracil form 1 (Fallon, 1973). Instead of producing such isostructural cocrystals, an entirely new structure was discovered, grown from solution in 2,2,2-trifluoroethanol, containing 5-fluorouracil and thymine in a solid solution.
A cocrystal can be defined as a ). In the structure reported here, both of the crystallographically independent sites (Fig. 1) can be occupied by either 5-fluorouracil or thymine molecules, giving non-integer occupancies for both molecules at each site and leading to the description of this structure as a rather than a cocrystal.
containing two (or more) molecular species on separate crystallographic sites with a fixed stoichiometric ratio in the in contrast with a which exhibits `a homogeneous crystalline phase in which some of the constituent molecules are substituted by foreign molecules that possess sufficient similarity that the lattice dimensions are changed only slightly' (Datta & Grant, 2004The structure adopts the monoclinic C2/c. The denoted (I), of a crystal grown from a 1:1 solution of 5-fluorouracil and thymine, with the structure determined at 150 K, is reported; two further structure determinations are reported to exemplify the features of this system. (II) denotes the determination of a crystal grown from a 1:1 solution at 298 K and (III) denotes the determination of a crystal grown from a 2:1 solution of 5-fluorouracil and thymine at 150 K. Structure (I) will be used exclusively for the purposes of the discussion of the with the other two determinations used to highlight features of the structure.
The only difference between 5-fluorouracil and thymine is the substituent bonded to the 5-position in the molecular structure, and hence the only sign of the occupational disorder is the F:Me ratio at the 9- and 19-positions in the and (II) were grown from 1:1 5-fluorouracil/thymine crystallization solutions and have similar F:Me ratios at the 9- and 19-postions [for (I), 0.52 (1):0.48 (1) for the 9-position and 0.70 (1):0.30 (1) for the 19-position; for (II), 0.55 (1):0.45 (1) for the 9-position and 0.69 (2):0.31 (2) for the 19-position]. This result indicates that the 5-fluorouracil/thymine ratio in the crystals is not simply a statistical distribution throughout the crystal but depends on the ratio in the crystallization solution. This fact is exemplified by the distinct preference for incorporating F at the 19-position, even though the original crystallization solution contained a 1:1 ratio. Structure (III) was grown from a 2:1 solution and has a higher proportion of F at both positions [0.66 (1):0.34 (1) for the 9-position and 0.76 (1):0.24 (1) for the 19-position]. It can be concluded that altering the 5-fluorouracil/thymine ratio in the crystallization solution will alter the ratio at each of the crystallographically independent sites. Refinements of (I) as either fully 5-fluorouracil or fully thymine did not prove satisfactory, yielding unacceptable displacement parameters at the 9- and 19-positions, and higher than expected R factors, thus confirming the disordered model.
Both (I)Structure (II), measured at room temperature, shows in the a axis of approximately 0.5 Å (2.6%) compared with structure (I), determined at 150 K. No significant change is evident in either of the other cell axes or the β angle. The was determined at 298 K for the crystal used for (III) at 150 K, and a similar expansion in the a axis was observed [a = 19.704 (11) Å at 298 K and a = 19.235 (3) Å at 150 K].
It should be noted that crystals with this structure could not be grown from solutions with 5-fluorouracil/thymine ratios of 3:1 or 1:2, and attempts to grow pure 5-fluorouracil crystals with this structure from seeded solutions also failed. This implies that the two compounds have a limited solubility range in this solid solution.
The –3). Two R22(8) hydrogen-bonded dimers are present (Bernstein et al., 1995), with one dimer composed of two N3—H3⋯O8(−x + 1, −y + 2, −z + 1) hydrogen bonds and the other dimer composed of two N13—H13⋯O18(−x + , −y + , −z + 2) hydrogen bonds. Along with the dimers, two single D11(2) hydrogen bonds participate in the overall hydrogen-bond network (Fig. 2), viz. N1—H1⋯O17(−x + , y − , −z + ) and N11—H11⋯O7.
contains four independent N—H⋯O hydrogen bonds, and all hydrogen-bond donors and acceptors are used (Table 1The hydrogen bonds build a two-dimensional net, with the constituent rings of the net made up of 14 molecules in an approximately rectangular conformation. Of the 14 molecules, 12 are involved in six dimers joined by R22(8) hydrogen-bonded rings, and these dimers are connected together by single hydrogen bonds. The two remaining molecules are at diagonally opposite corners of the rectangle; along with the two single hydrogen bonds that incorporate each of these molecules into the ring, each participates in a dimer with the second molecule part of the adjacent ring. These interactions hence produce the two-dimensional net motif (Fig. 3).
Two subsets of nets are observed; within each subset, the planes of the nets are parallel to one another, but each of the subsets is parallel to different Miller planes, viz. [11] and [1]. The two subsets interpenetrate to give the overall three-dimensional hydrogen-bonded motif (Fig. 4), with hydrogen bonding at the points of interpenetration of the nets via single hydrogen bonds only.
Experimental
The crystals used for determinations (I) and (II) were produced from a of 5-fluorouracil and thymine (1:1 molar ratio) in 2,2,2-trifluoroethanol by solvent evaporation. The crystal used for (III) was produced from a of 5-fluorouracil and thymine (2:1 molar ratio) in 2,2,2-trifluoroethanol by solvent evaporation.
Determination (I)
Crystal data
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Refinement
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Determination (II)
Crystal data
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Refinement
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Determination (III)
Crystal data
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Refinement
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In all three structures, the C5—C9 and C15—C19 bonds were restrained to 1.520 (2) Å, and the C5—F9 and C15—F19 bonds were restrained to 1.350 (2) Å. For each determination, all H atoms other than the methyl H atoms were located in a difference map and were refined isotropically. In determinations (I) and (II), methyl H atoms were modelled as idealized disordered methyl groups over two sites offset by 60°. For determination (III), the C19 methyl group was modelled as an idealized disordered methyl group, and for the C9 methyl group the H atoms were located from a difference map and refined using a rigid rotor model. For (I), the refined C—H bond lengths are 0.948 (18) and 0.968 (17) Å, with all methyl C—H bond lengths fixed at 0.98 Å; the range of N—H bond lengths is 0.875 (18)–0.901 (18) Å. For (II), the C—H bond lengths are 0.95 (3) and 1.02 (3) Å, with all methyl C—H bond lengths fixed at 0.96 Å; the range of N—H bond lengths is 0.86 (3)–0.89 (3) Å. For (III), the C—H bond lengths are 0.950 (19) and 0.96 (2) Å, with all methyl C—H bond lengths fixed at 0.98 Å; the range of N—H bond lengths is 0.84 (2)–0.90 (2) Å.
For all determinations, data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics and software used to prepare material for publication: CAMERON (Watkin et al., 1996) and MERCURY (Macrae et al., 2006).
Supporting information
10.1107/S0108270106019688/gg3013sup1.cif
contains datablocks I, II, III, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270106019688/gg3013Isup2.hkl
Structure factors: contains datablock II. DOI: 10.1107/S0108270106019688/gg3013IIsup3.hkl
Structure factors: contains datablock III. DOI: 10.1107/S0108270106019688/gg3013IIIsup4.hkl
The crystals used for determinations (I) and (II) were produced from a
of 5-fluorouracil and thymine (1:1 molar ratio) in 2,2,2-trifluoroethanol by solvent evaporation. The crystal used for (III) was produced from a of 5-fluorouracil and thymine (2:1 molar ratio) in 2,2,2-trifluoroethanol by solvent evaporation.In all three structures the bonds C5—C9 and C15—C19 were restrained to 1.520 (2) Å and the bonds C5—F9 and C15—F19 were restrained to 1.350 (2) Å. For each determination, all H atoms other than the methyl H atoms were located in the difference map and were refined isotropically. In determinations (I) and (II), methyl H atoms were modelled as idealized disordered methyl groups over two sites, offset by 60°. For determination (III), the methyl group at C19 was modelled as an idealized disordered methyl group and for the methyl group at C9 the H atoms were located from ΔF and refined using a rigid rotor model. For structure (I), the refined C—H bond lengths are 0.95</span>(2) and 0.97 (2) Å, with all methyl C—H lengths fixed at 0.98 Å; the range of N—H bond lengths is 0.88 (2) to 0.90 (2) Å. For structure (II) the C—H bond lengths are 0.95 (3) and 1.02 (3) Å, with all methyl C—H lengths fixed at 0.96 Å; the range of N—H bond lengths is 0.86 (2) to 0.89 (3) Å. For structure (III), the C—H bond lengths are 0.95 (2) and 0.96 (2) Å, with all methyl C—H lengths fixed at 0.98 Å; the range of N—H bond lengths is 0.84 (2) to 0.90<span style=" font-weight:600;">(2) Å.
For all compounds, data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); software used to prepare material for publication: CAMERON (Watkin et al., 1996) and Mercury (Macrae et al., 2006).Fig. 1. The asymmetric unit of the title cocrystal. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as spheres (only one component of the disordered methyl groups is shown). The dashed line indicates a hydrogen bond. | |
Fig. 2. The hydrogen bonding present in the crystal structure. Hydrogen bonds are shown as dotted lines. [Symmetry codes: (i) 3/2 − x, y − 1/2, 3/2 − z; (ii) 1 − x, 2 − y, 1 − z; (iii) 3/2 − x, 1/2 − y, 2 − z.] | |
Fig. 3. Four adjacent rings from a single net. Hydrogen bonds are shown as dotted lines. | |
Fig. 4. A view of three nets parallel to the c axis, with two nets parallel to one another and intersecting the third net. Separate nets are shown as single colours. Hydrogen bonds are shown as dotted lines. |
C4.48H4.45F0.52N2O2·C4.30H3.91F0.70N2O2 | F(000) = 1056 |
Mr = 257.07 | Dx = 1.660 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 4174 reflections |
a = 19.3785 (15) Å | θ = 2.3–27.9° |
b = 5.9918 (5) Å | µ = 0.15 mm−1 |
c = 20.0293 (15) Å | T = 150 K |
β = 117.813 (1)° | Diamond tablet, colourless |
V = 2057.0 (3) Å3 | 0.79 × 0.22 × 0.20 mm |
Z = 8 |
Bruker SMART APEX diffractometer | 2459 independent reflections |
Radiation source: fine-focus sealed tube | 2232 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.016 |
ω rotation with narrow frames scans | θmax = 28.3°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −25→25 |
Tmin = 0.893, Tmax = 0.971 | k = −7→7 |
8568 measured reflections | l = −26→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: mixed |
wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0452P)2 + 1.6915P] where P = (Fo2 + 2Fc2)/3 |
2459 reflections | (Δ/σ)max < 0.001 |
207 parameters | Δρmax = 0.35 e Å−3 |
4 restraints | Δρmin = −0.19 e Å−3 |
C4.48H4.45F0.52N2O2·C4.30H3.91F0.70N2O2 | V = 2057.0 (3) Å3 |
Mr = 257.07 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 19.3785 (15) Å | µ = 0.15 mm−1 |
b = 5.9918 (5) Å | T = 150 K |
c = 20.0293 (15) Å | 0.79 × 0.22 × 0.20 mm |
β = 117.813 (1)° |
Bruker SMART APEX diffractometer | 2459 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2232 reflections with I > 2σ(I) |
Tmin = 0.893, Tmax = 0.971 | Rint = 0.016 |
8568 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 4 restraints |
wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.35 e Å−3 |
2459 reflections | Δρmin = −0.19 e Å−3 |
207 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
F9 | 0.5287 (5) | 0.5725 (16) | 0.34143 (12) | 0.0362 (14) | 0.524 (8) |
C9 | 0.5169 (9) | 0.573 (4) | 0.33083 (14) | 0.0347 (17) | 0.476 (8) |
H9A | 0.4846 | 0.7064 | 0.3111 | 0.052* | 0.238 (4) |
H9B | 0.4842 | 0.4393 | 0.3112 | 0.052* | 0.238 (4) |
H9C | 0.5576 | 0.5718 | 0.3149 | 0.052* | 0.238 (4) |
H9D | 0.5330 | 0.4386 | 0.3137 | 0.052* | 0.238 (4) |
H9E | 0.5334 | 0.7057 | 0.3136 | 0.052* | 0.238 (4) |
H9F | 0.4600 | 0.5732 | 0.3099 | 0.052* | 0.238 (4) |
O7 | 0.63996 (6) | 0.59939 (16) | 0.64191 (5) | 0.0302 (2) | |
O8 | 0.48879 (6) | 0.91031 (16) | 0.41262 (5) | 0.0298 (2) | |
N1 | 0.63001 (6) | 0.41914 (18) | 0.53753 (6) | 0.0252 (2) | |
H1 | 0.6629 (10) | 0.314 (3) | 0.5667 (10) | 0.034 (4)* | |
N3 | 0.56482 (6) | 0.75029 (18) | 0.52639 (6) | 0.0227 (2) | |
H3 | 0.5504 (9) | 0.860 (3) | 0.5481 (9) | 0.032 (4)* | |
C2 | 0.61375 (7) | 0.5881 (2) | 0.57345 (7) | 0.0224 (3) | |
C4 | 0.53270 (7) | 0.7575 (2) | 0.44885 (7) | 0.0225 (3) | |
C5 | 0.55443 (7) | 0.5728 (2) | 0.41635 (6) | 0.0245 (3) | |
C6 | 0.60150 (8) | 0.4126 (2) | 0.46055 (8) | 0.0262 (3) | |
H6 | 0.6180 (9) | 0.287 (3) | 0.4412 (9) | 0.032 (4)* | |
F19 | 0.6142 (3) | −0.1573 (5) | 0.8072 (3) | 0.0361 (8) | 0.695 (8) |
C19 | 0.5927 (9) | −0.151 (2) | 0.7950 (12) | 0.045 (4) | 0.305 (8) |
H19A | 0.5983 | −0.2251 | 0.8408 | 0.067* | 0.152 (4) |
H19B | 0.6029 | −0.2578 | 0.7637 | 0.067* | 0.152 (4) |
H19C | 0.5395 | −0.0924 | 0.7666 | 0.067* | 0.152 (4) |
H19D | 0.5622 | −0.1585 | 0.7399 | 0.067* | 0.152 (4) |
H19E | 0.5576 | −0.1257 | 0.8170 | 0.067* | 0.152 (4) |
H19F | 0.6210 | −0.2911 | 0.8142 | 0.067* | 0.152 (4) |
O17 | 0.77445 (6) | 0.60761 (16) | 0.85727 (5) | 0.0322 (2) | |
O18 | 0.69016 (6) | 0.02966 (17) | 0.94790 (5) | 0.0296 (2) | |
N11 | 0.69425 (7) | 0.3489 (2) | 0.77421 (6) | 0.0285 (3) | |
H11 | 0.6911 (10) | 0.425 (3) | 0.7355 (11) | 0.042 (5)* | |
N13 | 0.73097 (6) | 0.31769 (18) | 0.90113 (6) | 0.0222 (2) | |
H13 | 0.7564 (10) | 0.370 (3) | 0.9471 (10) | 0.033 (4)* | |
C12 | 0.73583 (7) | 0.4364 (2) | 0.84456 (7) | 0.0239 (3) | |
C14 | 0.69056 (7) | 0.1218 (2) | 0.89290 (7) | 0.0233 (3) | |
C15 | 0.65056 (8) | 0.0408 (2) | 0.81649 (7) | 0.0288 (3) | |
C16 | 0.65294 (8) | 0.1548 (3) | 0.76039 (7) | 0.0306 (3) | |
H16 | 0.6261 (10) | 0.109 (3) | 0.7093 (10) | 0.038 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F9 | 0.051 (3) | 0.038 (2) | 0.0171 (11) | 0.016 (2) | 0.0143 (15) | 0.0031 (16) |
C9 | 0.036 (3) | 0.046 (4) | 0.0178 (19) | 0.011 (2) | 0.009 (2) | −0.005 (2) |
O7 | 0.0357 (5) | 0.0319 (5) | 0.0206 (4) | 0.0054 (4) | 0.0111 (4) | 0.0049 (4) |
O8 | 0.0356 (5) | 0.0283 (5) | 0.0199 (4) | 0.0106 (4) | 0.0083 (4) | 0.0012 (4) |
N1 | 0.0273 (5) | 0.0216 (5) | 0.0263 (5) | 0.0050 (4) | 0.0121 (4) | 0.0043 (4) |
N3 | 0.0257 (5) | 0.0221 (5) | 0.0198 (5) | 0.0036 (4) | 0.0101 (4) | −0.0001 (4) |
C2 | 0.0219 (6) | 0.0226 (6) | 0.0224 (6) | 0.0000 (5) | 0.0100 (5) | 0.0034 (4) |
C4 | 0.0229 (6) | 0.0233 (6) | 0.0202 (6) | 0.0006 (5) | 0.0092 (5) | −0.0004 (4) |
C5 | 0.0280 (6) | 0.0256 (6) | 0.0205 (6) | 0.0014 (5) | 0.0118 (5) | −0.0017 (5) |
C6 | 0.0285 (6) | 0.0238 (6) | 0.0286 (6) | 0.0011 (5) | 0.0153 (5) | −0.0025 (5) |
F19 | 0.045 (2) | 0.0339 (10) | 0.0257 (16) | −0.0228 (8) | 0.0133 (15) | −0.0097 (7) |
C19 | 0.050 (9) | 0.053 (6) | 0.026 (5) | −0.041 (6) | 0.014 (6) | −0.014 (4) |
O17 | 0.0451 (6) | 0.0279 (5) | 0.0235 (5) | −0.0091 (4) | 0.0160 (4) | −0.0007 (4) |
O18 | 0.0371 (5) | 0.0330 (5) | 0.0197 (4) | −0.0105 (4) | 0.0142 (4) | −0.0022 (4) |
N11 | 0.0350 (6) | 0.0327 (6) | 0.0137 (5) | −0.0016 (5) | 0.0080 (4) | 0.0031 (4) |
N13 | 0.0257 (5) | 0.0248 (5) | 0.0145 (5) | −0.0023 (4) | 0.0082 (4) | −0.0017 (4) |
C12 | 0.0279 (6) | 0.0249 (6) | 0.0183 (6) | 0.0017 (5) | 0.0102 (5) | 0.0017 (5) |
C14 | 0.0241 (6) | 0.0264 (6) | 0.0194 (6) | −0.0026 (5) | 0.0101 (5) | −0.0021 (5) |
C15 | 0.0315 (7) | 0.0315 (7) | 0.0218 (6) | −0.0107 (5) | 0.0111 (5) | −0.0061 (5) |
C16 | 0.0301 (7) | 0.0404 (8) | 0.0159 (6) | −0.0052 (6) | 0.0061 (5) | −0.0047 (5) |
F9—C5 | 1.3426 (18) | F19—C15 | 1.3488 (17) |
C9—C5 | 1.517 (2) | C19—C15 | 1.519 (2) |
O7—C2 | 1.2218 (15) | O17—C12 | 1.2248 (16) |
O8—C4 | 1.2301 (15) | O18—C14 | 1.2355 (15) |
N1—C2 | 1.3611 (17) | N11—C12 | 1.3600 (16) |
N1—C6 | 1.3745 (17) | N11—C16 | 1.3651 (19) |
N1—H1 | 0.894 (18) | N11—H11 | 0.876 (19) |
N3—C2 | 1.3779 (16) | N13—C14 | 1.3774 (16) |
N3—C4 | 1.3781 (15) | N13—C12 | 1.3775 (16) |
N3—H3 | 0.901 (18) | N13—H13 | 0.875 (18) |
C4—C5 | 1.4426 (17) | C14—C15 | 1.4392 (17) |
C5—C6 | 1.3355 (18) | C15—C16 | 1.3340 (19) |
C6—H6 | 0.968 (17) | C16—H16 | 0.948 (18) |
C2—N1—C6 | 122.90 (11) | C12—N11—C16 | 123.11 (11) |
C2—N1—H1 | 116.8 (11) | C12—N11—H11 | 118.7 (13) |
C6—N1—H1 | 120.3 (11) | C16—N11—H11 | 118.1 (12) |
C2—N3—C4 | 126.71 (11) | C14—N13—C12 | 126.48 (11) |
C2—N3—H3 | 116.9 (10) | C14—N13—H13 | 116.1 (11) |
C4—N3—H3 | 116.3 (10) | C12—N13—H13 | 117.4 (12) |
O7—C2—N1 | 123.85 (12) | O17—C12—N11 | 123.18 (12) |
O7—C2—N3 | 121.44 (12) | O17—C12—N13 | 122.08 (11) |
N1—C2—N3 | 114.71 (11) | N11—C12—N13 | 114.74 (11) |
O8—C4—N3 | 120.82 (11) | O18—C14—N13 | 120.92 (11) |
O8—C4—C5 | 124.90 (11) | O18—C14—C15 | 124.96 (12) |
N3—C4—C5 | 114.27 (11) | N13—C14—C15 | 114.12 (11) |
C6—C5—F9 | 121.5 (4) | C16—C15—F19 | 123.7 (2) |
C6—C5—C4 | 120.34 (11) | C16—C15—C14 | 120.66 (12) |
F9—C5—C4 | 118.1 (4) | F19—C15—C14 | 115.6 (2) |
C6—C5—C9 | 124.6 (7) | C16—C15—C19 | 117.3 (8) |
C4—C5—C9 | 115.0 (7) | C14—C15—C19 | 121.1 (9) |
C5—C6—N1 | 121.05 (12) | C15—C16—N11 | 120.86 (12) |
C5—C6—H6 | 123.1 (10) | C15—C16—H16 | 122.9 (11) |
N1—C6—H6 | 115.9 (10) | N11—C16—H16 | 116.2 (11) |
C6—N1—C2—O7 | −178.26 (12) | C16—N11—C12—O17 | 178.17 (13) |
C6—N1—C2—N3 | 1.43 (17) | C16—N11—C12—N13 | −2.17 (19) |
C4—N3—C2—O7 | 178.96 (12) | C14—N13—C12—O17 | −178.62 (12) |
C4—N3—C2—N1 | −0.74 (18) | C14—N13—C12—N11 | 1.72 (19) |
C2—N3—C4—O8 | 179.07 (12) | C12—N13—C14—O18 | −179.86 (12) |
C2—N3—C4—C5 | −0.14 (18) | C12—N13—C14—C15 | −0.01 (18) |
O8—C4—C5—C6 | −178.76 (13) | O18—C14—C15—C16 | 178.45 (14) |
N3—C4—C5—C6 | 0.41 (18) | N13—C14—C15—C16 | −1.4 (2) |
O8—C4—C5—F9 | 4.0 (5) | O18—C14—C15—F19 | −3.8 (3) |
N3—C4—C5—F9 | −176.8 (5) | N13—C14—C15—F19 | 176.3 (3) |
O8—C4—C5—C9 | −1.7 (9) | O18—C14—C15—C19 | 10.0 (10) |
N3—C4—C5—C9 | 177.5 (9) | N13—C14—C15—C19 | −169.9 (10) |
F9—C5—C6—N1 | 177.4 (5) | F19—C15—C16—N11 | −176.5 (3) |
C4—C5—C6—N1 | 0.2 (2) | C14—C15—C16—N11 | 1.0 (2) |
C9—C5—C6—N1 | −176.5 (9) | C19—C15—C16—N11 | 169.9 (10) |
C2—N1—C6—C5 | −1.2 (2) | C12—N11—C16—C15 | 0.9 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17i | 0.894 (18) | 1.895 (18) | 2.7769 (15) | 168.4 (16) |
N3—H3···O8ii | 0.901 (18) | 1.910 (18) | 2.8092 (14) | 175.2 (15) |
N11—H11···O7 | 0.876 (19) | 1.96 (2) | 2.7892 (14) | 156.6 (16) |
N13—H13···O18iii | 0.875 (18) | 1.956 (18) | 2.8291 (14) | 176.1 (16) |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) −x+1, −y+2, −z+1; (iii) −x+3/2, −y+1/2, −z+2. |
C4.45H4.36F0.55N2O2·C4.31H3.94F0.69N2O2 | F(000) = 1056 |
Mr = 257.13 | Dx = 1.627 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1826 reflections |
a = 19.856 (11) Å | θ = 2.3–23.5° |
b = 5.946 (3) Å | µ = 0.14 mm−1 |
c = 20.073 (11) Å | T = 298 K |
β = 117.660 (8)° | Diamond tablet, colourless |
V = 2099.0 (19) Å3 | 0.69 × 0.20 × 0.15 mm |
Z = 8 |
Bruker SMART APEX diffractometer | 2492 independent reflections |
Radiation source: fine-focus sealed tube | 1856 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
ω rotation with narrow frames scans | θmax = 28.4°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −25→25 |
Tmin = 0.907, Tmax = 0.979 | k = −7→7 |
8509 measured reflections | l = −25→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: mixed |
wR(F2) = 0.138 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0602P)2 + 1.3663P] where P = (Fo2 + 2Fc2)/3 |
2492 reflections | (Δ/σ)max < 0.001 |
207 parameters | Δρmax = 0.24 e Å−3 |
4 restraints | Δρmin = −0.19 e Å−3 |
C4.45H4.36F0.55N2O2·C4.31H3.94F0.69N2O2 | V = 2099.0 (19) Å3 |
Mr = 257.13 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 19.856 (11) Å | µ = 0.14 mm−1 |
b = 5.946 (3) Å | T = 298 K |
c = 20.073 (11) Å | 0.69 × 0.20 × 0.15 mm |
β = 117.660 (8)° |
Bruker SMART APEX diffractometer | 2492 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1856 reflections with I > 2σ(I) |
Tmin = 0.907, Tmax = 0.979 | Rint = 0.031 |
8509 measured reflections |
R[F2 > 2σ(F2)] = 0.056 | 4 restraints |
wR(F2) = 0.138 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.24 e Å−3 |
2492 reflections | Δρmin = −0.19 e Å−3 |
207 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
F9 | 0.5251 (6) | 0.5622 (17) | 0.34149 (15) | 0.074 (3) | 0.549 (13) |
C9 | 0.5188 (10) | 0.568 (4) | 0.33157 (17) | 0.054 (4) | 0.451 (13) |
H9A | 0.4870 | 0.6984 | 0.3118 | 0.081* | 0.226 (6) |
H9B | 0.4888 | 0.4348 | 0.3120 | 0.081* | 0.226 (6) |
H9C | 0.5585 | 0.5717 | 0.3171 | 0.081* | 0.226 (6) |
H9D | 0.5359 | 0.4382 | 0.3155 | 0.081* | 0.226 (6) |
H9E | 0.5340 | 0.7018 | 0.3152 | 0.081* | 0.226 (6) |
H9F | 0.4643 | 0.5649 | 0.3102 | 0.081* | 0.226 (6) |
O7 | 0.64097 (10) | 0.6061 (3) | 0.64158 (9) | 0.0512 (4) | |
O8 | 0.48828 (9) | 0.9043 (3) | 0.41302 (8) | 0.0496 (4) | |
N1 | 0.63040 (11) | 0.4223 (3) | 0.53755 (11) | 0.0410 (5) | |
H1 | 0.6616 (14) | 0.322 (5) | 0.5660 (14) | 0.051 (7)* | |
N3 | 0.56521 (10) | 0.7510 (3) | 0.52624 (10) | 0.0357 (4) | |
H3 | 0.5521 (13) | 0.858 (4) | 0.5486 (13) | 0.043 (6)* | |
C2 | 0.61447 (11) | 0.5919 (3) | 0.57359 (11) | 0.0350 (5) | |
C4 | 0.53236 (12) | 0.7541 (3) | 0.44906 (11) | 0.0344 (5) | |
C5 | 0.55361 (12) | 0.5688 (4) | 0.41683 (11) | 0.0389 (5) | |
C6 | 0.60124 (13) | 0.4121 (4) | 0.46085 (13) | 0.0422 (5) | |
H6 | 0.6206 (14) | 0.283 (4) | 0.4411 (14) | 0.053 (7)* | |
F19 | 0.6146 (4) | −0.1532 (7) | 0.8070 (3) | 0.0568 (16) | 0.685 (14) |
C19 | 0.5897 (10) | −0.134 (3) | 0.7940 (16) | 0.074 (9) | 0.315 (14) |
H19A | 0.5944 | −0.2092 | 0.8384 | 0.111* | 0.158 (7) |
H19B | 0.5960 | −0.2417 | 0.7616 | 0.111* | 0.158 (7) |
H19C | 0.5402 | −0.0667 | 0.7680 | 0.111* | 0.158 (7) |
H19D | 0.5594 | −0.1359 | 0.7403 | 0.111* | 0.158 (7) |
H19E | 0.5578 | −0.1034 | 0.8171 | 0.111* | 0.158 (7) |
H19F | 0.6135 | −0.2783 | 0.8106 | 0.111* | 0.158 (7) |
O17 | 0.77299 (10) | 0.6112 (3) | 0.85737 (9) | 0.0522 (5) | |
O18 | 0.68974 (10) | 0.0316 (3) | 0.94708 (8) | 0.0491 (4) | |
N11 | 0.69425 (11) | 0.3544 (3) | 0.77465 (10) | 0.0446 (5) | |
H11 | 0.6916 (14) | 0.439 (5) | 0.7371 (16) | 0.060 (8)* | |
N13 | 0.73006 (10) | 0.3201 (3) | 0.90068 (9) | 0.0346 (4) | |
H13 | 0.7572 (12) | 0.366 (4) | 0.9473 (14) | 0.038 (6)* | |
C12 | 0.73498 (13) | 0.4410 (3) | 0.84481 (11) | 0.0369 (5) | |
C14 | 0.69017 (12) | 0.1249 (4) | 0.89244 (11) | 0.0365 (5) | |
C15 | 0.65032 (13) | 0.0467 (3) | 0.81615 (12) | 0.0439 (6) | |
C16 | 0.65290 (13) | 0.1612 (4) | 0.76069 (12) | 0.0460 (6) | |
H16 | 0.6264 (14) | 0.114 (4) | 0.7095 (15) | 0.050 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F9 | 0.111 (5) | 0.073 (4) | 0.032 (2) | 0.045 (3) | 0.028 (3) | 0.001 (2) |
C9 | 0.068 (7) | 0.061 (8) | 0.037 (4) | 0.005 (6) | 0.028 (5) | 0.000 (5) |
O7 | 0.0643 (11) | 0.0513 (10) | 0.0330 (9) | 0.0119 (8) | 0.0183 (8) | 0.0101 (7) |
O8 | 0.0643 (10) | 0.0450 (9) | 0.0314 (8) | 0.0224 (8) | 0.0153 (8) | 0.0014 (7) |
N1 | 0.0461 (11) | 0.0315 (9) | 0.0434 (11) | 0.0112 (8) | 0.0192 (9) | 0.0076 (8) |
N3 | 0.0449 (10) | 0.0312 (9) | 0.0307 (9) | 0.0073 (8) | 0.0174 (8) | −0.0002 (7) |
C2 | 0.0370 (11) | 0.0329 (10) | 0.0347 (11) | 0.0018 (9) | 0.0163 (9) | 0.0070 (8) |
C4 | 0.0383 (11) | 0.0331 (11) | 0.0309 (10) | 0.0041 (9) | 0.0152 (9) | 0.0007 (8) |
C5 | 0.0463 (12) | 0.0386 (11) | 0.0334 (11) | 0.0047 (10) | 0.0199 (10) | −0.0033 (9) |
C6 | 0.0490 (13) | 0.0348 (11) | 0.0469 (13) | 0.0047 (10) | 0.0258 (11) | −0.0039 (10) |
F19 | 0.072 (4) | 0.0523 (18) | 0.040 (2) | −0.0371 (17) | 0.021 (3) | −0.0139 (14) |
C19 | 0.063 (13) | 0.071 (10) | 0.053 (9) | −0.045 (9) | −0.003 (8) | −0.002 (6) |
O17 | 0.0739 (11) | 0.0416 (9) | 0.0401 (9) | −0.0203 (8) | 0.0256 (8) | −0.0024 (7) |
O18 | 0.0672 (11) | 0.0505 (10) | 0.0312 (8) | −0.0206 (8) | 0.0242 (8) | −0.0019 (7) |
N11 | 0.0587 (12) | 0.0455 (11) | 0.0242 (9) | −0.0065 (9) | 0.0147 (9) | 0.0043 (8) |
N13 | 0.0438 (10) | 0.0357 (9) | 0.0220 (9) | −0.0068 (8) | 0.0133 (8) | −0.0034 (7) |
C12 | 0.0460 (12) | 0.0346 (11) | 0.0296 (10) | 0.0008 (10) | 0.0171 (9) | 0.0027 (8) |
C14 | 0.0413 (11) | 0.0369 (11) | 0.0320 (11) | −0.0059 (9) | 0.0178 (9) | −0.0018 (9) |
C15 | 0.0522 (13) | 0.0426 (12) | 0.0349 (12) | −0.0160 (11) | 0.0185 (10) | −0.0073 (9) |
C16 | 0.0475 (13) | 0.0565 (15) | 0.0244 (11) | −0.0064 (11) | 0.0087 (10) | −0.0050 (10) |
F9—C5 | 1.347 (2) | F19—C15 | 1.352 (2) |
C9—C5 | 1.519 (2) | C19—C15 | 1.520 (2) |
O7—C2 | 1.217 (3) | O17—C12 | 1.217 (3) |
O8—C4 | 1.224 (2) | O18—C14 | 1.233 (2) |
N1—C2 | 1.361 (3) | N11—C12 | 1.358 (3) |
N1—C6 | 1.372 (3) | N11—C16 | 1.363 (3) |
N1—H1 | 0.86 (3) | N11—H11 | 0.89 (3) |
N3—C4 | 1.374 (3) | N13—C14 | 1.371 (3) |
N3—C2 | 1.376 (3) | N13—C12 | 1.373 (3) |
N3—H3 | 0.88 (3) | N13—H13 | 0.88 (2) |
C4—C5 | 1.437 (3) | C14—C15 | 1.436 (3) |
C5—C6 | 1.329 (3) | C15—C16 | 1.326 (3) |
C6—H6 | 1.02 (3) | C16—H16 | 0.95 (3) |
C2—N1—C6 | 123.23 (19) | C12—N11—C16 | 122.97 (19) |
C2—N1—H1 | 115.7 (17) | C12—N11—H11 | 115.9 (18) |
C6—N1—H1 | 121.0 (17) | C16—N11—H11 | 120.8 (18) |
C4—N3—C2 | 126.97 (18) | C14—N13—C12 | 126.92 (18) |
C4—N3—H3 | 117.8 (15) | C14—N13—H13 | 115.0 (15) |
C2—N3—H3 | 115.1 (15) | C12—N13—H13 | 117.9 (15) |
O7—C2—N1 | 124.15 (19) | O17—C12—N11 | 122.92 (19) |
O7—C2—N3 | 121.7 (2) | O17—C12—N13 | 122.58 (19) |
N1—C2—N3 | 114.11 (19) | N11—C12—N13 | 114.50 (19) |
O8—C4—N3 | 120.72 (18) | O18—C14—N13 | 121.04 (19) |
O8—C4—C5 | 124.90 (18) | O18—C14—C15 | 125.12 (19) |
N3—C4—C5 | 114.37 (18) | N13—C14—C15 | 113.83 (17) |
C6—C5—F9 | 121.6 (5) | C16—C15—F19 | 124.0 (3) |
C6—C5—C4 | 120.34 (19) | C16—C15—C14 | 120.80 (19) |
F9—C5—C4 | 118.0 (5) | F19—C15—C14 | 115.1 (3) |
C6—C5—C9 | 124.0 (9) | C16—C15—C19 | 116.9 (11) |
C4—C5—C9 | 115.7 (9) | C14—C15—C19 | 120.7 (12) |
C5—C6—N1 | 121.0 (2) | C15—C16—N11 | 121.0 (2) |
C5—C6—H6 | 123.5 (14) | C15—C16—H16 | 122.4 (15) |
N1—C6—H6 | 115.5 (14) | N11—C16—H16 | 116.6 (15) |
C6—N1—C2—O7 | −178.5 (2) | C16—N11—C12—O17 | 178.6 (2) |
C6—N1—C2—N3 | 1.2 (3) | C16—N11—C12—N13 | −1.2 (3) |
C4—N3—C2—O7 | 179.4 (2) | C14—N13—C12—O17 | −178.6 (2) |
C4—N3—C2—N1 | −0.3 (3) | C14—N13—C12—N11 | 1.1 (3) |
C2—N3—C4—O8 | 178.9 (2) | C12—N13—C14—O18 | −179.7 (2) |
C2—N3—C4—C5 | −0.3 (3) | C12—N13—C14—C15 | −0.1 (3) |
O8—C4—C5—C6 | −179.1 (2) | O18—C14—C15—C16 | 178.6 (2) |
N3—C4—C5—C6 | 0.1 (3) | N13—C14—C15—C16 | −0.9 (3) |
O8—C4—C5—F9 | 2.3 (6) | O18—C14—C15—F19 | −4.7 (5) |
N3—C4—C5—F9 | −178.6 (5) | N13—C14—C15—F19 | 175.8 (4) |
O8—C4—C5—C9 | 1.4 (8) | O18—C14—C15—C19 | 13.4 (13) |
N3—C4—C5—C9 | −179.5 (8) | N13—C14—C15—C19 | −166.1 (12) |
F9—C5—C6—N1 | 179.4 (6) | F19—C15—C16—N11 | −175.5 (4) |
C4—C5—C6—N1 | 0.7 (3) | C14—C15—C16—N11 | 0.9 (4) |
C9—C5—C6—N1 | −179.7 (8) | C19—C15—C16—N11 | 166.6 (13) |
C2—N1—C6—C5 | −1.4 (3) | C12—N11—C16—C15 | 0.2 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17i | 0.86 (3) | 1.94 (3) | 2.792 (3) | 171 (2) |
N3—H3···O8ii | 0.88 (3) | 1.95 (3) | 2.831 (2) | 173 (2) |
N11—H11···O7 | 0.89 (3) | 1.97 (3) | 2.805 (3) | 156 (2) |
N13—H13···O18iii | 0.88 (2) | 1.98 (2) | 2.852 (3) | 175 (2) |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) −x+1, −y+2, −z+1; (iii) −x+3/2, −y+1/2, −z+2. |
C4.33H3.99F0.67N2O2·C4.24H3.73F0.76N2O2 | F(000) = 1056 |
Mr = 257.87 | Dx = 1.690 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 4138 reflections |
a = 19.235 (3) Å | θ = 2.3–28.1° |
b = 5.9683 (8) Å | µ = 0.15 mm−1 |
c = 20.042 (3) Å | T = 150 K |
β = 118.216 (2)° | Colourless, diamond tablet |
V = 2027.4 (5) Å3 | 0.45 × 0.37 × 0.34 mm |
Z = 8 |
Bruker SMART APEX diffractometer | 2405 independent reflections |
Radiation source: fine-focus sealed tube | 2147 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
ω rotation with narrow frames scans | θmax = 28.1°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −25→25 |
Tmin = 0.935, Tmax = 0.950 | k = −7→7 |
8306 measured reflections | l = −26→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: mixed |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0584P)2 + 1.4434P] where P = (Fo2 + 2Fc2)/3 |
2405 reflections | (Δ/σ)max < 0.001 |
207 parameters | Δρmax = 0.30 e Å−3 |
4 restraints | Δρmin = −0.25 e Å−3 |
C4.33H3.99F0.67N2O2·C4.24H3.73F0.76N2O2 | V = 2027.4 (5) Å3 |
Mr = 257.87 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 19.235 (3) Å | µ = 0.15 mm−1 |
b = 5.9683 (8) Å | T = 150 K |
c = 20.042 (3) Å | 0.45 × 0.37 × 0.34 mm |
β = 118.216 (2)° |
Bruker SMART APEX diffractometer | 2405 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2147 reflections with I > 2σ(I) |
Tmin = 0.935, Tmax = 0.950 | Rint = 0.030 |
8306 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 4 restraints |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.30 e Å−3 |
2405 reflections | Δρmin = −0.25 e Å−3 |
207 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
F9 | 0.5279 (5) | 0.5785 (15) | 0.34048 (12) | 0.0345 (13) | 0.665 (9) |
C9 | 0.5158 (17) | 0.573 (6) | 0.32973 (16) | 0.038 (3) | 0.335 (9) |
H9A | 0.4832 | 0.7080 | 0.3098 | 0.056* | 0.167 (4) |
H9B | 0.4826 | 0.4398 | 0.3102 | 0.056* | 0.167 (4) |
H9C | 0.5567 | 0.5719 | 0.3137 | 0.056* | 0.167 (4) |
H9D | 0.5318 | 0.4385 | 0.3127 | 0.056* | 0.167 (4) |
H9E | 0.5324 | 0.7066 | 0.3123 | 0.056* | 0.167 (4) |
H9F | 0.4583 | 0.5746 | 0.3088 | 0.056* | 0.167 (4) |
O7 | 0.63948 (6) | 0.59234 (18) | 0.64111 (6) | 0.0286 (3) | |
O8 | 0.48920 (6) | 0.91451 (17) | 0.41236 (5) | 0.0275 (3) | |
N1 | 0.62952 (7) | 0.4148 (2) | 0.53618 (7) | 0.0236 (3) | |
H1 | 0.6633 (11) | 0.309 (3) | 0.5651 (11) | 0.033 (5)* | |
N3 | 0.56477 (7) | 0.74840 (19) | 0.52591 (6) | 0.0212 (3) | |
H3 | 0.5518 (11) | 0.856 (3) | 0.5480 (10) | 0.032 (5)* | |
C2 | 0.61329 (8) | 0.5833 (2) | 0.57262 (7) | 0.0210 (3) | |
C4 | 0.53269 (8) | 0.7596 (2) | 0.44817 (7) | 0.0208 (3) | |
C5 | 0.55438 (8) | 0.5747 (2) | 0.41560 (7) | 0.0234 (3) | |
C6 | 0.60107 (9) | 0.4111 (2) | 0.45916 (8) | 0.0245 (3) | |
H6 | 0.6154 (11) | 0.287 (3) | 0.4388 (11) | 0.030 (4)* | |
F19 | 0.6120 (2) | −0.1625 (4) | 0.8077 (2) | 0.0352 (8) | 0.756 (9) |
C19 | 0.5876 (9) | −0.149 (3) | 0.7930 (12) | 0.043 (4) | 0.244 (9) |
H19A | 0.5922 | −0.2260 | 0.8380 | 0.064* | 0.122 (5) |
H19B | 0.5960 | −0.2563 | 0.7605 | 0.064* | 0.122 (5) |
H19C | 0.5349 | −0.0828 | 0.7650 | 0.064* | 0.122 (5) |
H19D | 0.5565 | −0.1507 | 0.7377 | 0.064* | 0.122 (5) |
H19E | 0.5527 | −0.1204 | 0.8152 | 0.064* | 0.122 (5) |
H19F | 0.6138 | −0.2939 | 0.8107 | 0.064* | 0.122 (5) |
O17 | 0.77433 (7) | 0.60358 (18) | 0.85675 (6) | 0.0308 (3) | |
O18 | 0.68982 (6) | 0.02760 (18) | 0.94850 (5) | 0.0282 (3) | |
N11 | 0.69302 (8) | 0.3432 (2) | 0.77386 (6) | 0.0275 (3) | |
H11 | 0.6890 (11) | 0.422 (4) | 0.7375 (13) | 0.042 (6)* | |
N13 | 0.73048 (7) | 0.3148 (2) | 0.90106 (6) | 0.0214 (3) | |
H13 | 0.7555 (11) | 0.372 (3) | 0.9461 (11) | 0.030 (4)* | |
C12 | 0.73522 (8) | 0.4327 (2) | 0.84422 (7) | 0.0228 (3) | |
C14 | 0.68991 (8) | 0.1187 (2) | 0.89316 (7) | 0.0222 (3) | |
C15 | 0.64939 (9) | 0.0352 (2) | 0.81688 (8) | 0.0278 (3) | |
C16 | 0.65137 (9) | 0.1487 (3) | 0.76029 (8) | 0.0298 (3) | |
H16 | 0.6243 (12) | 0.101 (3) | 0.7082 (12) | 0.041 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F9 | 0.054 (3) | 0.0353 (17) | 0.0161 (9) | 0.0142 (19) | 0.0183 (14) | 0.0026 (13) |
C9 | 0.038 (5) | 0.050 (6) | 0.022 (3) | 0.011 (4) | 0.012 (4) | −0.005 (4) |
O7 | 0.0367 (6) | 0.0307 (6) | 0.0176 (5) | 0.0049 (4) | 0.0122 (4) | 0.0041 (4) |
O8 | 0.0359 (6) | 0.0270 (5) | 0.0170 (5) | 0.0101 (4) | 0.0104 (4) | 0.0016 (4) |
N1 | 0.0276 (6) | 0.0206 (6) | 0.0230 (6) | 0.0048 (5) | 0.0123 (5) | 0.0036 (4) |
N3 | 0.0262 (6) | 0.0212 (6) | 0.0172 (5) | 0.0040 (5) | 0.0111 (5) | 0.0005 (4) |
C2 | 0.0215 (6) | 0.0221 (6) | 0.0201 (6) | 0.0004 (5) | 0.0104 (5) | 0.0037 (5) |
C4 | 0.0232 (6) | 0.0227 (6) | 0.0177 (6) | 0.0005 (5) | 0.0106 (5) | −0.0004 (5) |
C5 | 0.0301 (7) | 0.0248 (7) | 0.0179 (6) | 0.0019 (5) | 0.0134 (5) | −0.0010 (5) |
C6 | 0.0294 (7) | 0.0224 (6) | 0.0255 (7) | 0.0018 (5) | 0.0160 (6) | −0.0017 (5) |
F19 | 0.0454 (19) | 0.0351 (9) | 0.0212 (16) | −0.0219 (9) | 0.0126 (14) | −0.0079 (7) |
C19 | 0.046 (9) | 0.048 (6) | 0.020 (6) | −0.031 (6) | 0.004 (6) | −0.007 (4) |
O17 | 0.0452 (6) | 0.0272 (5) | 0.0215 (5) | −0.0086 (5) | 0.0169 (5) | −0.0006 (4) |
O18 | 0.0371 (6) | 0.0316 (6) | 0.0181 (5) | −0.0101 (4) | 0.0149 (4) | −0.0018 (4) |
N11 | 0.0366 (7) | 0.0318 (7) | 0.0119 (5) | −0.0024 (5) | 0.0097 (5) | 0.0033 (5) |
N13 | 0.0266 (6) | 0.0243 (6) | 0.0128 (5) | −0.0027 (5) | 0.0089 (4) | −0.0017 (4) |
C12 | 0.0287 (7) | 0.0244 (7) | 0.0160 (6) | 0.0013 (5) | 0.0112 (5) | 0.0021 (5) |
C14 | 0.0240 (6) | 0.0257 (7) | 0.0175 (6) | −0.0022 (5) | 0.0104 (5) | −0.0018 (5) |
C15 | 0.0325 (7) | 0.0307 (8) | 0.0199 (7) | −0.0099 (6) | 0.0121 (6) | −0.0059 (5) |
C16 | 0.0314 (7) | 0.0396 (8) | 0.0138 (6) | −0.0068 (6) | 0.0070 (5) | −0.0044 (6) |
F9—C5 | 1.3423 (18) | F19—C15 | 1.3485 (17) |
C9—C5 | 1.518 (2) | C19—C15 | 1.519 (2) |
O7—C2 | 1.2195 (17) | O17—C12 | 1.2207 (17) |
O8—C4 | 1.2257 (16) | O18—C14 | 1.2360 (17) |
N1—C2 | 1.3629 (18) | N11—C12 | 1.3603 (18) |
N1—C6 | 1.3726 (19) | N11—C16 | 1.363 (2) |
N1—H1 | 0.90 (2) | N11—H11 | 0.84 (2) |
N3—C2 | 1.3756 (17) | N13—C14 | 1.3739 (18) |
N3—C4 | 1.3796 (17) | N13—C12 | 1.3782 (17) |
N3—H3 | 0.88 (2) | N13—H13 | 0.87 (2) |
C4—C5 | 1.4408 (19) | C14—C15 | 1.4372 (18) |
C5—C6 | 1.334 (2) | C15—C16 | 1.337 (2) |
C6—H6 | 0.950 (19) | C16—H16 | 0.96 (2) |
C2—N1—C6 | 122.95 (12) | C12—N11—C16 | 123.22 (12) |
C2—N1—H1 | 117.0 (12) | C12—N11—H11 | 116.4 (15) |
C6—N1—H1 | 119.8 (12) | C16—N11—H11 | 120.0 (15) |
C2—N3—C4 | 126.91 (12) | C14—N13—C12 | 126.57 (12) |
C2—N3—H3 | 116.3 (12) | C14—N13—H13 | 117.5 (12) |
C4—N3—H3 | 116.8 (12) | C12—N13—H13 | 115.9 (13) |
O7—C2—N1 | 123.95 (12) | O17—C12—N11 | 123.30 (13) |
O7—C2—N3 | 121.38 (13) | O17—C12—N13 | 122.11 (12) |
N1—C2—N3 | 114.67 (12) | N11—C12—N13 | 114.58 (12) |
O8—C4—N3 | 120.98 (12) | O18—C14—N13 | 120.87 (12) |
O8—C4—C5 | 125.19 (12) | O18—C14—C15 | 124.89 (13) |
N3—C4—C5 | 113.82 (12) | N13—C14—C15 | 114.24 (11) |
C6—C5—F9 | 121.8 (4) | C16—C15—F19 | 123.71 (19) |
C6—C5—C4 | 120.89 (12) | C16—C15—C14 | 120.54 (13) |
F9—C5—C4 | 117.2 (4) | F19—C15—C14 | 115.7 (2) |
C6—C5—C9 | 123.7 (13) | C16—C15—C19 | 115.5 (8) |
C4—C5—C9 | 115.2 (13) | C14—C15—C19 | 122.4 (10) |
C5—C6—N1 | 120.75 (13) | C15—C16—N11 | 120.80 (13) |
C5—C6—H6 | 122.2 (11) | C15—C16—H16 | 123.3 (13) |
N1—C6—H6 | 117.0 (11) | N11—C16—H16 | 115.9 (12) |
C6—N1—C2—O7 | −178.19 (13) | C16—N11—C12—O17 | 177.91 (14) |
C6—N1—C2—N3 | 1.13 (19) | C16—N11—C12—N13 | −2.1 (2) |
C4—N3—C2—O7 | 178.72 (13) | C14—N13—C12—O17 | −178.24 (13) |
C4—N3—C2—N1 | −0.6 (2) | C14—N13—C12—N11 | 1.8 (2) |
C2—N3—C4—O8 | 179.05 (13) | C12—N13—C14—O18 | −179.94 (13) |
C2—N3—C4—C5 | −0.1 (2) | C12—N13—C14—C15 | 0.0 (2) |
O8—C4—C5—C6 | −178.75 (14) | O18—C14—C15—C16 | 178.33 (15) |
N3—C4—C5—C6 | 0.4 (2) | N13—C14—C15—C16 | −1.6 (2) |
O8—C4—C5—F9 | 3.5 (5) | O18—C14—C15—F19 | −3.1 (3) |
N3—C4—C5—F9 | −177.4 (4) | N13—C14—C15—F19 | 177.0 (2) |
O8—C4—C5—C9 | −3.0 (15) | O18—C14—C15—C19 | 13.3 (11) |
N3—C4—C5—C9 | 176.1 (15) | N13—C14—C15—C19 | −166.6 (11) |
F9—C5—C6—N1 | 177.8 (4) | F19—C15—C16—N11 | −177.2 (2) |
C4—C5—C6—N1 | 0.1 (2) | C14—C15—C16—N11 | 1.3 (2) |
C9—C5—C6—N1 | −175.3 (16) | C19—C15—C16—N11 | 167.3 (12) |
C2—N1—C6—C5 | −0.9 (2) | C12—N11—C16—C15 | 0.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17i | 0.90 (2) | 1.90 (2) | 2.7790 (16) | 165.9 (18) |
N3—H3···O8ii | 0.88 (2) | 1.93 (2) | 2.8054 (15) | 173.3 (17) |
N11—H11···O7 | 0.84 (2) | 1.98 (2) | 2.7856 (16) | 159.7 (19) |
N13—H13···O18iii | 0.87 (2) | 1.96 (2) | 2.8205 (15) | 174.1 (18) |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) −x+1, −y+2, −z+1; (iii) −x+3/2, −y+1/2, −z+2. |
Experimental details
(I) | (II) | (III) | |
Crystal data | |||
Chemical formula | C4.48H4.45F0.52N2O2·C4.30H3.91F0.70N2O2 | C4.45H4.36F0.55N2O2·C4.31H3.94F0.69N2O2 | C4.33H3.99F0.67N2O2·C4.24H3.73F0.76N2O2 |
Mr | 257.07 | 257.13 | 257.87 |
Crystal system, space group | Monoclinic, C2/c | Monoclinic, C2/c | Monoclinic, C2/c |
Temperature (K) | 150 | 298 | 150 |
a, b, c (Å) | 19.3785 (15), 5.9918 (5), 20.0293 (15) | 19.856 (11), 5.946 (3), 20.073 (11) | 19.235 (3), 5.9683 (8), 20.042 (3) |
β (°) | 117.813 (1) | 117.660 (8) | 118.216 (2) |
V (Å3) | 2057.0 (3) | 2099.0 (19) | 2027.4 (5) |
Z | 8 | 8 | 8 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.15 | 0.14 | 0.15 |
Crystal size (mm) | 0.79 × 0.22 × 0.20 | 0.69 × 0.20 × 0.15 | 0.45 × 0.37 × 0.34 |
Data collection | |||
Diffractometer | Bruker SMART APEX diffractometer | Bruker SMART APEX diffractometer | Bruker SMART APEX diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) | Multi-scan (SADABS; Sheldrick, 1996) | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.893, 0.971 | 0.907, 0.979 | 0.935, 0.950 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8568, 2459, 2232 | 8509, 2492, 1856 | 8306, 2405, 2147 |
Rint | 0.016 | 0.031 | 0.030 |
(sin θ/λ)max (Å−1) | 0.666 | 0.668 | 0.664 |
Refinement | |||
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.096, 1.06 | 0.056, 0.138, 1.09 | 0.042, 0.110, 1.07 |
No. of reflections | 2459 | 2492 | 2405 |
No. of parameters | 207 | 207 | 207 |
No. of restraints | 4 | 4 | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.19 | 0.24, −0.19 | 0.30, −0.25 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), CAMERON (Watkin et al., 1996) and Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17i | 0.894 (18) | 1.895 (18) | 2.7769 (15) | 168.4 (16) |
N3—H3···O8ii | 0.901 (18) | 1.910 (18) | 2.8092 (14) | 175.2 (15) |
N11—H11···O7 | 0.876 (19) | 1.96 (2) | 2.7892 (14) | 156.6 (16) |
N13—H13···O18iii | 0.875 (18) | 1.956 (18) | 2.8291 (14) | 176.1 (16) |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) −x+1, −y+2, −z+1; (iii) −x+3/2, −y+1/2, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17i | 0.86 (3) | 1.94 (3) | 2.792 (3) | 171 (2) |
N3—H3···O8ii | 0.88 (3) | 1.95 (3) | 2.831 (2) | 173 (2) |
N11—H11···O7 | 0.89 (3) | 1.97 (3) | 2.805 (3) | 156 (2) |
N13—H13···O18iii | 0.88 (2) | 1.98 (2) | 2.852 (3) | 175 (2) |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) −x+1, −y+2, −z+1; (iii) −x+3/2, −y+1/2, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O17i | 0.90 (2) | 1.90 (2) | 2.7790 (16) | 165.9 (18) |
N3—H3···O8ii | 0.88 (2) | 1.93 (2) | 2.8054 (15) | 173.3 (17) |
N11—H11···O7 | 0.84 (2) | 1.98 (2) | 2.7856 (16) | 159.7 (19) |
N13—H13···O18iii | 0.87 (2) | 1.96 (2) | 2.8205 (15) | 174.1 (18) |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) −x+1, −y+2, −z+1; (iii) −x+3/2, −y+1/2, −z+2. |
Acknowledgements
The authors acknowledge the Research Councils UK Basic Technology Programme for supporting `Control and Prediction of the Organic Solid State'. For further information, please visit https://www.cposs.org.uk .
References
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F atoms and methyl groups have been identified as being capable of replacing one another in a molecule to produce isomorphic crystal structures because of their similar size, shape and van der Waals interactions (Kuhnert-Brandstatter, 1982). Attempts were made to exploit this interchangeability as part of an ongoing study into the crystalline solid state of 5-fluorouracil (Hulme et al., 2005; Hamad et al., 2006) with the aim of growing 5-fluorouracil crystals isostructural with the structure of thymine (Portalone et al., 1999) or thymine crystals isostructural with 5-fluorouracil form 1 (Fallon, 1973). Instead of producing such isostructural cocrystals, an entirely new structure was discovered, grown from solution in 2,2,2-trifluoroethanol, containing 5-fluorouracil and thymine in a solid solution.
A cocrystal can be defined as a crystal structure containing two (or more) molecular species on separate crystallographic sites with a fixed stoichiometric ratio in the crystal structure, in contrast with a solid solution which exhibits `a homogeneous crystalline phase in which some of the constituent molecules are substituted by foreign molecules that possess sufficient similarity that the lattice dimensions are changed only slightly' (Datta & Grant, 2004). In the structure reported here, both of the crystallographically independent sites (Fig. 1) can be occupied by either 5-fluorouracil or thymine molecules, giving non-integer occupancies for both molecules at each site and leading to the description of this structure as a solid solution rather than a cocrystal.
The structure adopts the monoclinic space group C2/c. The crystal structure, (I), of a crystal grown from a 1:1 solution of 5-fluorouracil/thymine, with the structure determined at 150 K, is reported; two further structure determinations are reported to exemplify the features of this system. (II) denotes the crystal structure determination of a crystal grown from a 1:1 solution at 298 K and (III) denotes the crystal structure determination of a crystal grown grown from a 2:1 solution of 5-fluorouracil:thymine at 150 K. Structure (I) will be used exclusively for the purposes of the discussion of the crystal structure, with the other two determinations used to highlight features of the solid solution structure.
The only difference between 5-fluorouracil and thymine is the substituent bonded to the 5-position in the molecular structure, and hence the only sign of the occupational disorder is the ratio F:Me at positions 9 and 19 in the crystal structure. Both (I) and (II) were grown from 1:1 5-fluorouracil/thymine crystallization solutions and have similar F:Me ratios at postions 9 and 19 [for (I), 0.52 (1):0.48 (1) for the 9-position and 0.70 (1):0.30 (1) for the 19-position; for (II), 0.55 (1):0.45 (1) for the 9-position and 0.69 (2):0.31 (2) for the 19-position]. This result indicates that the 5-fluorouracil/thymine ratio in the crystals is not simply a statistical distribution throughout the crystal but depends on the ratio in the crystallization solution. This fact is exemplified by the distinct preference for incorporating F at the 19-position, even though the original crystallization solution contained a 1:1 ratio. Structure (III) was grown from a 2:1 solution and has a higher proportion of F at both positions [0.66 (1):0.34 (1) for the 9-position and 0.76 (1):0.24 (1) for the 19-position]. It can be concluded that altering the 5-fluorouracil/thymine ratio in the crystallization solution will alter the ratio at each of the crystallographically independent sites. Refinements of (I) as either fully 5-fluorouracil or fully thymine did not prove statisfactory, yielding unacceptable displacment parameters at the 9- and 19-positions, and higher than expected R factors, thus confirming the disordered model.
Structure (II), measured at room temperature, shows thermal expansion in the a axis of approximately 0.5 Å (2.6%) compared with structure (I), determined at 150 K. No significant change is evident in either of the other cell axes or the β angle. The unit cell was determined at 298 K for the crystal used for (III) at 150 K, and a similar expansion in the a axis was observed [a = 19.704 (11) Å at 298 K and a = 19.235 (3) Å at 150 K).
It should be noted that crystals with this structure could not be grown from solutions with 5-fluorouracil/thymine ratios of 75:25 or 33:66, and attempts to grow pure 5-fluorouracil crystals with this structure from seeded solutions also failed. This result implies that the two compounds have a limited solubility range in this solid solution.
The crystal structure contains four independent N—H···O hydrogen bonds, and all hydrogen-bond donors and acceptors are used. Two R22(8) hydrogen-bonded dimers are present (Bernstein et al., 1995), with one dimer composed of two N3—H3···O8(1 − x, 2 − y, 1 − z) hydrogen bonds and the other dimer composed of two N13—H13···O18(−x + 3/2, −y + 1/2, −z + 2) hydrogen bonds. Along with the dimers, two single D11(2) hydrogen bonds participate in the overall hydrogen-bond network (Fig. 2), N1—H1···O17(−x + 3/2, −1/2 + y, −z + 3/2) and N11—H11···O7.
The hydrogen bonds build a two-dimensional net, with the constituent rings of the net made up of 14 molecules in an approximately rectangular conformation. Of the 14 molecules, 12 are involved in six dimers joined by R22(8) hydrogen-bonded rings, and these dimers are connected together by single hydrogen bonds. The two remaining molecules are at diagonally opposite corners of the rectangle; along with the two single hydrogen bonds that incorporate each of these molecules into the ring, each participates in a dimer with the second molecule part of the adjacent ring. These interactions hence produce the two-dimensional net motif (Fig. 3).
Two subsets of nets are observed; within each subset, the planes of the nets are parallel to one another, but each of the subsets is parallel to different Miller planes, viz. [511] and [511]. The two subsets interpenetrate to give the overall three-dimensional hydrogen-bonded motif (Fig. 4), with hydrogen bonding at the points of interpenetration of the nets via single hydrogen bonds only.