organic compounds
Three substituted 4-pyrazolylbenzoates: hydrogen-bonded supramolecular structures in one, two and three dimensions
aGrupo de Investigación de Compuestos Heterocíclicos, Departamento de Química, Universidad de Valle, AA 25360 Cali, Colombia, bCONICET–Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Suipacha 531, S2002LRK, Argentina, cDepartamento de Química Inorgánica y Orgánica, Universidad de Jaén, 23071 Jaén, Spain, dDepartment of Chemistry, University of Aberdeen, Meston Walk, Old Aberdeen AB24 3UE, Scotland, and eSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland
*Correspondence e-mail: cg@st-andrews.ac.uk
The molecules of ethyl 4-(5-amino-3-methyl-1H-pyrazol-1-yl)benzoate, C13H15N3O2, are linked by two independent N—H⋯O hydrogen bonds into a chain of edge-fused and alternating R42(8) and R22(20) rings. A combination of N—H⋯N and N—H⋯O hydrogen bonds links the molecules of methyl 4-(5-amino-3-tert-butyl-1H-pyrazol-1-yl)benzoate, C15H19N3O2, into sheets of alternating R22(20) and R66(32) rings. In 4-(5-amino-3-methyl-1H-pyrazol-1-yl)benzoic acid monohydrate, C11H11N3O2·H2O, the molecular components are linked into a three-dimensional framework structure by a combination of five independent hydrogen bonds, two of O—H⋯N type and one each of O—H⋯O, N—H⋯O and N—H⋯N types.
Comment
As precursors for the synthesis of pyrazolo[1,5-a][1,3,5]benzotriazepines, which are useful as drugs, agrochemicals and dye intermediates (Tachibana & Kaneko, 1989), we have synthesized several 4-(5-aminopyrazol-1-yl)benzoates by construction of the pyrazole ring from 4-hydrazinobenzoic acid and 3-aminocrotononitrile, and report here the structures of three substituted 4-pyrazolylbenzoic acid derivatives, namely ethyl 4-(5-amino-3-methyl-1H-pyrazol-1-yl)benzoate, (I), methyl 4-(5-amino-3-tert-butyl-1H-pyrazol-1-yl)benzoate, (II), and 4-(5-amino-3-methyl-1H-pyrazol-1-yl)benzoic acid monohydrate, (III) (Figs. 1–3).
The intramolecular geometries of compounds (I)–(III) present no unexpected features; the pyrazole rings all exhibit marked bond fixation, and the dihedral angles between the two rings in (I)–(III) are 30.1 (2), 34.2 (2) and 46.5 (2)°, respectively. The principal points of interest in the structures of compounds (I)–(III) are the different modes of supramolecular aggregation, leading to hydrogen-bonded structures in one, two and three dimensions, respectively.
The supramolecular structure of compound (I) is simple. Amino atom N45 in the molecule at (x, y, z) acts as a hydrogen-bond donor, via H45A and H45B, to the O11 atoms in the molecules at (−x, 1 − y, 1 − z) and (x, y, 1 + z), respectively (Table 1). Propagation by translation and inversion of these two hydrogen bonds then generates a chain of edge-fused centrosymmetric rings running parallel to the [001] direction, with R22(20) (Bernstein et al., 1995) rings centred at (0, , n + ) (where n represents zero or an integer), and R42(8) rings centred at (0, , n) (n = zero or integer) (Fig. 4). There are no direction-specific interactions between adjacent chains; in particular C—H⋯π(arene) hydrogen bonds and aromatic π–π stacking interactions are both absent.
The molecules of compound (II) are linked by a combination of N—H⋯O and N—H⋯N hydrogen bonds (Table 2); this may be contrasted with compound (I), where N—H⋯N hydrogen bonds were absent. The molecules are linked into sheets, and the formation of the sheet is readily analysed in terms of a dimeric building block. Amino atom N45 in the molecule at (x, y, z) acts as a hydrogen-bond donor, via H45A, to atom O11 in the molecule at (1 − x, 1 − y, 1 − z), so generating by inversion a dimeric unit characterized by an R22(20) motif. In addition, the N45 atoms in the molecules at (x, y, z) and (1 − x, 1 − y, 1 − z), which are components of the R22(20) dimer centred at (, , ), act as hydrogen-bond donors, via H45B, to the ring atoms N42 of the molecules at (1 − x, + y, − z) and (x, − y, + z), respectively, which are themselves components of the dimers centred at (, 1, 0) and (, 0, 1). In a similar way, atoms N42 at (x, y, z) and (1 − x, 1 − y, 1 − z) accept hydrogen bonds from atoms N45 in the molecules at (1 − x, − + y, − z) and (x, − y, + z), which are components of the dimers centred at (, 0, 0) and (, 1, 1) respectively. Thus, each dimer is directly linked, via N—H⋯N hydrogen bonds, to four adjacent dimers, and propagation of this interaction by the leads to the formation of a sheet parallel to (100) built from alternating R22(20) and R66(32) rings, where both ring types are centrosymmetric (Fig. 5). There are no direction-specific interactions between adjacent sheets, nor is there any interweaving of adjacent sheets, despite the occurrence of the large R66(32) rings; interweaving is prevented by the effective masking of the large rings by pairs of tert-butyl groups (Fig. 5).
Compound (III) is a stoichiometric monohydrate, and in the selected (Fig. 3), the components are linked by a rather short and almost linear O—H⋯O hydrogen bond (Table 3). Four further hydrogen bonds link the molecular components into a single three-dimensional framework structure, whose formation is readily analysed in terms of three independent one-dimensional substructures, only one of which involves the water molecule. In the first which runs parallel to the [100] direction, water atom O1 at (x, y, z) acts as a hydrogen-bond donor, via H1A and H1B, respectively, to atom N42 at (−x, 1 − y, 1 − z) and N45 at (1 − x, 1 − y, 1 − z). Propagation by inversion of these two hydrogen bonds then generates a chain of edge-fused centrosymmetric rings with R44(22) rings centred at (n, , ) (n = zero or integer) and R44(24) rings centred at (n + , , ) (n = zero or integer) (Fig. 6).
The second x, y, z) acts as a hydrogen-bond donor, via H45A, to ring atom N42 at ( − x, + y, − z), so forming a C(5) chain generated by the 21 screw axis along (, y, ) (Fig. 7). The third is also built from only the organic components, and runs along the [10] direction; amino atom N45 at (x, y, z) acts as a hydrogen-bond donor, this time via H45B, to atom O11 at ( + x, − y, − + z), so forming a C(10) chain generated by the n-glide plane at y = (Fig. 8). The combination of the chains along [100], [010] and [10] suffices to link all the molecules into a single three-dimensional framework structure.
runs parallel to the [010] direction and consists of simple chains built from the organic component only; amino atom N45 at (Thus, rather modest changes in the peripheral substituents in compounds (I)–(III) are associated with substantial changes both in the patterns of the hydrogen bonds deployed and in the dimensionality of the resulting supramolecular structures.
Experimental
For the synthesis of compounds (I) and (III), 3-aminocrotononitrile (3.3 mmol) was added at ambient temperature to a stirred solution of 4-hydrazinobenzoic acid (3.3 mmol) in ethanol (6 ml). The resulting suspension was stirred for 20 min and then 5 M HCl solution (15 ml) was added. The mixture was stirred for 40 min at 368 K and, after cooling (< 263 K), the solution was made either basic or neutral, in separate experiments, using aqueous ammonia solution. From the basic solution, compound (I) was precipitated upon removal of the solvent; compound (I) was collected by filtration and recrystallized from dimethyl sulfoxide to give yellow crystals suitable for single-crystal X-ray diffraction (yield 13%, m.p. 430–431 K). MS (70 eV) m/z (%): 245 (100, M+), 217 (21), 200 (39), 134 (11), 122 (26). From the neutral solution, compound (III) was precipitated upon removal of the solvent; the compound was collected by filtration and recrystallized from ethanol to give yellow crystals suitable for single-crystal X-ray diffraction (yield 72%, m.p. 503–504 K). MS (70 eV) m/z (%): 217 (100, M+), 200 (28). For the synthesis of compound (II), 4,4-dimethyl-3-oxopentanenitrile (3.3 mmol) was added at ambient temperature to a stirred solution of 4-hydrazinobenzoic acid (3.3 mmol) in methanol (6 ml). The resulting suspension was stirred for 20 min and then 5 M HCl solution (15 ml) was added. The mixture was stirred for 40 min at 368 K and, after cooling (< 263 K), the mixture was neutralized using aqueous ammonia solution. The intermediate 4-(5-amino-3-tert-butyl-1H-pyrazol-1-yl)benzoic acid was precipitated as a yellow solid (yield 80%, m.p. 468–469 K). A suspension of the entire batch of this intermediate in methanol (6 ml) was treated with diazomethane (3.3 mmol) at 273–283 K. Compound (II) was formed as a yellow solid, which was collected by filtration and then recrystallized from methanol to afford yellow crystals suitable for single-crystal X-ray diffraction (overall yield 76%, m.p. 468–469 K). MS (70 eV) m/z (%): 273 (53, M+), 258 (100), 231 (83).
Compound (I)
Crystal data
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Refinement
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Compound (II)
Crystal data
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Refinement
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Compound (III)
Crystal data
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Refinement
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For compounds (II) and (III), the space groups P21/c and P21/n, respectively, were uniquely assigned from the Crystals of compound (I) are triclinic; P was selected and confirmed by the structure analysis. All H atoms were located in difference maps and then treated as riding atoms. H atoms bonded to C atoms were assigned standard C—H distances [0.95 (aromatic), 0.98 (CH3) or 0.99 Å (CH2), with Uiso(H) = kUeq(C), where k = 1.5 for methyl groups and 1.2 for other H atoms bonded to C atoms]. The H atoms bonded to N or O atoms were permitted to ride at the distances found from difference maps [N—H = 0.91–0.94 Å and O—H = 0.90 Å, with Uiso(H) = 1.2Ueq(N) or 1.5Ueq(O).]
For all compounds, data collection: COLLECT (Hooft, 1999); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S0108270106050360/gg3055sup1.cif
contains datablocks global, I, II, III. DOI:Structure factors: contains datablock I. DOI: 10.1107/S0108270106050360/gg3055Isup2.hkl
Structure factors: contains datablock II. DOI: 10.1107/S0108270106050360/gg3055IIsup3.hkl
Structure factors: contains datablock III. DOI: 10.1107/S0108270106050360/gg3055IIIsup4.hkl
For the synthesis of compounds (I) and (III), 3-aminocrotononitrile (3.3 mmol) was added at ambient temperature to a stirred solution of 4-hydrazinobenzoic acid (3.3 mmol) in ethanol (6 ml). The resulting suspension was stirred for 20 min and then 5 M HCl solution (15 ml) was added. The mixture was stirred for 40 min at 368 K, and after cooling (< 263 K) the solution was made either basic or neutral, in separate experiments, using aqueous ammonia solution. From the basic solution, compound (I) was precipitated upon removal of the solvent; the compound was collected by filtration and recrystallized from DMSO to give yellow crystals suitable for single-crystal X-ray diffraction (yield 13%, m.p. 430–431 K). MS (70 eV) m/z (%) 245 (100, M+), 217?(21), 200?(39), 134?(11), 122?(26). From the neutral solution, compound (III) was precipitated upon removal of the solvent; the compound was collected by filtration and recrystallized from ethanol to give yellow crystals suitable for single-crystal X-ray diffraction (yield 72%, m.p. 503–504 K). MS (70 eV) m/z (%) = 217 (100, M+), 200 ?(28). For the synthesis of compound (II) 4,4-dimethyl-3-oxopentanenitrile (3.3 mmol) was added at ambient temperature to a stirred solution of 4-hydrazinobenzoic acid (3.3 mmol) in methanol (6 ml). The resulting suspension was stirred for 20 min and then 5M HCl solution (15 ml) was added. The mixture was stirred for 40 min at 368 K, and after cooling (< 263 K) the mixture was neutralized using aqueous ammonia solution. The intermediate 4-(5-amino-3-tert-butyl-1H-pyrazol-1-yl)benzoic acid was precipitated as a yellow solid (yield 80%, m.p. 468–469 K). A suspension of the entire batch of this intermediate in methanol (6 ml) was treated with diazomethane (3.3 mmol) at 273–283 K. Compound (II) was formed as a yellow solid, which was collected by filtration and then recrystallized from methanol to afford yellow crystals suitable for single-crystal X-ray diffraction (overall yield 76%, m.p. 468–469 K). MS (70 eV) m/z (%) = 273 (53, M+), 258?(100), 231?(83).
For compounds (II) and (III), the space groups P21/c and P21/n, respectively, were uniquely assigned from the 1 was selected, and confirmed by the structure analysis. All H atoms were located in difference maps and then treated as riding atoms. H atoms bonded to C atoms were assigned standard C—H distances [0.95 Å (aromatic), 0.98 Å (CH3) or 0.99 Å (CH2), with Uiso(H) = kUeq(C), where k = 1.5 for methyl groups and 1.2 for other H atoms]. The H atoms bonded to N or O atoms were permitted to ride at the distances found from difference maps [N—H = 0.91–0.94 Å and O—H = 0.90 Å, with Uiso(H) = 1.2Ueq(N) or 1.5Ueq(O).]
Crystals of compound (I) are triclinic; PFor all compounds, data collection: COLLECT (Hooft, 1999); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).C13H15N3O2 | Z = 2 |
Mr = 245.28 | F(000) = 260 |
Triclinic, P1 | Dx = 1.362 Mg m−3 |
Hall symbol: -P 1 | Melting point: 430 K |
a = 7.2228 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.4433 (3) Å | Cell parameters from 2748 reflections |
c = 10.5938 (5) Å | θ = 2.1–27.6° |
α = 98.234 (3)° | µ = 0.10 mm−1 |
β = 107.609 (2)° | T = 120 K |
γ = 97.907 (3)° | Plate, colourless |
V = 598.12 (5) Å3 | 0.28 × 0.14 × 0.06 mm |
Bruker–Nonius KappaCCD diffractometer | 2748 independent reflections |
Radiation source: Bruker-Nonius FR591 rotating anode | 1904 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.052 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.6°, θmin = 2.1° |
ϕ and ω scans | h = −9→9 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −10→10 |
Tmin = 0.979, Tmax = 0.994 | l = −13→13 |
12140 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.136 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0676P)2 + 0.0939P] where P = (Fo2 + 2Fc2)/3 |
2748 reflections | (Δ/σ)max = 0.001 |
165 parameters | Δρmax = 0.23 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
C13H15N3O2 | γ = 97.907 (3)° |
Mr = 245.28 | V = 598.12 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.2228 (4) Å | Mo Kα radiation |
b = 8.4433 (3) Å | µ = 0.10 mm−1 |
c = 10.5938 (5) Å | T = 120 K |
α = 98.234 (3)° | 0.28 × 0.14 × 0.06 mm |
β = 107.609 (2)° |
Bruker–Nonius KappaCCD diffractometer | 2748 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 1904 reflections with I > 2σ(I) |
Tmin = 0.979, Tmax = 0.994 | Rint = 0.052 |
12140 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.136 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.23 e Å−3 |
2748 reflections | Δρmin = −0.32 e Å−3 |
165 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.2358 (2) | 0.48950 (19) | 0.47329 (16) | 0.0203 (4) | |
C2 | 0.3291 (2) | 0.5776 (2) | 0.60484 (16) | 0.0223 (4) | |
C11 | 0.2299 (2) | 0.56079 (19) | 0.35266 (17) | 0.0211 (4) | |
O11 | 0.15727 (17) | 0.48372 (14) | 0.23714 (11) | 0.0273 (3) | |
O12 | 0.30959 (18) | 0.71974 (14) | 0.38273 (11) | 0.0249 (3) | |
C12 | 0.3015 (3) | 0.7981 (2) | 0.26690 (17) | 0.0265 (4) | |
C121 | 0.3781 (3) | 0.9772 (2) | 0.3201 (2) | 0.0393 (5) | |
C3 | 0.3304 (2) | 0.50584 (19) | 0.71474 (17) | 0.0218 (4) | |
C4 | 0.2337 (2) | 0.34459 (19) | 0.69318 (16) | 0.0202 (4) | |
C5 | 0.1408 (3) | 0.2555 (2) | 0.56222 (17) | 0.0235 (4) | |
C6 | 0.1434 (2) | 0.3274 (2) | 0.45321 (17) | 0.0229 (4) | |
N41 | 0.2326 (2) | 0.26682 (16) | 0.80299 (13) | 0.0211 (3) | |
N42 | 0.2263 (2) | 0.09975 (16) | 0.78477 (14) | 0.0238 (3) | |
C43 | 0.2324 (2) | 0.0635 (2) | 0.90363 (17) | 0.0230 (4) | |
C431 | 0.2345 (3) | −0.1079 (2) | 0.92392 (19) | 0.0286 (4) | |
C44 | 0.2385 (2) | 0.20233 (19) | 0.99792 (17) | 0.0226 (4) | |
C45 | 0.2370 (2) | 0.32944 (19) | 0.93107 (16) | 0.0211 (4) | |
N45 | 0.2409 (2) | 0.49295 (16) | 0.97490 (14) | 0.0248 (4) | |
H2 | 0.3926 | 0.6880 | 0.6192 | 0.027* | |
H12A | 0.1636 | 0.7789 | 0.2048 | 0.032* | |
H12B | 0.3839 | 0.7526 | 0.2167 | 0.032* | |
H12C | 0.2945 | 1.0211 | 0.3686 | 0.059* | |
H12D | 0.3756 | 1.0328 | 0.2447 | 0.059* | |
H12E | 0.5143 | 0.9947 | 0.3818 | 0.059* | |
H3 | 0.3966 | 0.5659 | 0.8040 | 0.026* | |
H5 | 0.0756 | 0.1456 | 0.5478 | 0.028* | |
H6 | 0.0819 | 0.2658 | 0.3640 | 0.028* | |
H43A | 0.2237 | −0.1780 | 0.8389 | 0.043* | |
H43B | 0.1225 | −0.1464 | 0.9529 | 0.043* | |
H43C | 0.3586 | −0.1118 | 0.9933 | 0.043* | |
H44 | 0.2428 | 0.2065 | 1.0889 | 0.027* | |
H45A | 0.1572 | 0.5388 | 0.9094 | 0.030* | |
H45B | 0.2059 | 0.5069 | 1.0538 | 0.030* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0213 (9) | 0.0239 (8) | 0.0187 (9) | 0.0078 (7) | 0.0083 (7) | 0.0061 (7) |
C2 | 0.0246 (9) | 0.0215 (8) | 0.0217 (9) | 0.0035 (7) | 0.0091 (7) | 0.0046 (7) |
C11 | 0.0218 (9) | 0.0230 (9) | 0.0209 (9) | 0.0061 (7) | 0.0094 (7) | 0.0049 (7) |
O11 | 0.0326 (7) | 0.0313 (7) | 0.0181 (7) | 0.0054 (5) | 0.0087 (5) | 0.0049 (5) |
O12 | 0.0320 (7) | 0.0252 (6) | 0.0195 (6) | 0.0043 (5) | 0.0097 (5) | 0.0091 (5) |
C12 | 0.0324 (10) | 0.0302 (9) | 0.0193 (9) | 0.0060 (7) | 0.0094 (8) | 0.0104 (7) |
C121 | 0.0644 (15) | 0.0283 (10) | 0.0283 (11) | 0.0103 (9) | 0.0169 (10) | 0.0108 (8) |
C3 | 0.0259 (9) | 0.0223 (8) | 0.0173 (8) | 0.0049 (7) | 0.0074 (7) | 0.0028 (6) |
C4 | 0.0238 (9) | 0.0219 (8) | 0.0191 (9) | 0.0086 (7) | 0.0098 (7) | 0.0074 (7) |
C5 | 0.0288 (10) | 0.0203 (8) | 0.0215 (9) | 0.0040 (7) | 0.0088 (7) | 0.0039 (7) |
C6 | 0.0268 (9) | 0.0244 (9) | 0.0175 (8) | 0.0058 (7) | 0.0077 (7) | 0.0020 (7) |
N41 | 0.0281 (8) | 0.0191 (7) | 0.0180 (7) | 0.0054 (6) | 0.0092 (6) | 0.0052 (5) |
N42 | 0.0294 (8) | 0.0194 (7) | 0.0239 (8) | 0.0055 (6) | 0.0094 (6) | 0.0059 (6) |
C43 | 0.0210 (9) | 0.0256 (9) | 0.0221 (9) | 0.0038 (7) | 0.0058 (7) | 0.0072 (7) |
C431 | 0.0313 (10) | 0.0251 (9) | 0.0303 (10) | 0.0042 (7) | 0.0100 (8) | 0.0096 (7) |
C44 | 0.0238 (9) | 0.0259 (9) | 0.0179 (9) | 0.0039 (7) | 0.0060 (7) | 0.0066 (7) |
C45 | 0.0222 (9) | 0.0245 (8) | 0.0168 (8) | 0.0051 (7) | 0.0062 (7) | 0.0049 (6) |
N45 | 0.0336 (9) | 0.0248 (7) | 0.0186 (8) | 0.0080 (6) | 0.0110 (6) | 0.0043 (6) |
C1—C6 | 1.394 (2) | C4—N41 | 1.417 (2) |
C1—C2 | 1.395 (2) | C5—C6 | 1.383 (2) |
C1—C11 | 1.480 (2) | C5—H5 | 0.95 |
C2—C3 | 1.385 (2) | C6—H6 | 0.95 |
C2—H2 | 0.95 | N41—C45 | 1.373 (2) |
C11—O11 | 1.2190 (19) | N41—N42 | 1.3887 (18) |
C11—O12 | 1.3371 (19) | N42—C43 | 1.327 (2) |
O12—C12 | 1.465 (2) | C43—C44 | 1.413 (2) |
C12—C121 | 1.499 (2) | C43—C431 | 1.495 (2) |
C12—H12A | 0.99 | C431—H43A | 0.98 |
C12—H12B | 0.99 | C431—H43B | 0.98 |
C121—H12C | 0.98 | C431—H43C | 0.98 |
C121—H12D | 0.98 | C44—C45 | 1.367 (2) |
C121—H12E | 0.98 | C44—H44 | 0.95 |
C3—C4 | 1.395 (2) | C45—N45 | 1.386 (2) |
C3—H3 | 0.95 | N45—H45A | 0.94 |
C4—C5 | 1.393 (2) | N45—H45B | 0.94 |
C6—C1—C2 | 119.19 (15) | C6—C5—C4 | 119.93 (15) |
C6—C1—C11 | 118.02 (15) | C6—C5—H5 | 120.0 |
C2—C1—C11 | 122.79 (15) | C4—C5—H5 | 120.0 |
C3—C2—C1 | 120.77 (15) | C5—C6—C1 | 120.48 (15) |
C3—C2—H2 | 119.6 | C5—C6—H6 | 119.8 |
C1—C2—H2 | 119.6 | C1—C6—H6 | 119.8 |
O11—C11—O12 | 123.03 (15) | C45—N41—N42 | 111.23 (13) |
O11—C11—C1 | 123.72 (15) | C45—N41—C4 | 130.60 (13) |
O12—C11—C1 | 113.24 (14) | N42—N41—C4 | 118.17 (13) |
C11—O12—C12 | 115.61 (13) | C43—N42—N41 | 104.42 (13) |
O12—C12—C121 | 107.65 (14) | N42—C43—C44 | 111.84 (14) |
O12—C12—H12A | 110.2 | N42—C43—C431 | 119.79 (15) |
C121—C12—H12A | 110.2 | C44—C43—C431 | 128.37 (15) |
O12—C12—H12B | 110.2 | C43—C431—H43A | 109.5 |
C121—C12—H12B | 110.2 | C43—C431—H43B | 109.5 |
H12A—C12—H12B | 108.5 | H43A—C431—H43B | 109.5 |
C12—C121—H12C | 109.5 | C43—C431—H43C | 109.5 |
C12—C121—H12D | 109.5 | H43A—C431—H43C | 109.5 |
H12C—C121—H12D | 109.5 | H43B—C431—H43C | 109.5 |
C12—C121—H12E | 109.5 | C45—C44—C43 | 105.73 (15) |
H12C—C121—H12E | 109.5 | C45—C44—H44 | 127.1 |
H12D—C121—H12E | 109.5 | C43—C44—H44 | 127.1 |
C2—C3—C4 | 119.43 (15) | C44—C45—N41 | 106.75 (14) |
C2—C3—H3 | 120.3 | C44—C45—N45 | 130.35 (15) |
C4—C3—H3 | 120.3 | N41—C45—N45 | 122.89 (14) |
C5—C4—C3 | 120.17 (15) | C45—N45—H45A | 113.1 |
C5—C4—N41 | 118.75 (14) | C45—N45—H45B | 110.1 |
C3—C4—N41 | 121.06 (14) | H45A—N45—H45B | 109.4 |
C6—C1—C2—C3 | −0.1 (2) | C5—C4—N41—C45 | −150.74 (17) |
C11—C1—C2—C3 | 179.84 (14) | C3—C4—N41—C45 | 31.1 (3) |
C6—C1—C11—O11 | −3.6 (2) | C5—C4—N41—N42 | 29.3 (2) |
C2—C1—C11—O11 | 176.42 (16) | C3—C4—N41—N42 | −148.87 (15) |
C6—C1—C11—O12 | 175.30 (14) | C45—N41—N42—C43 | −1.64 (17) |
C2—C1—C11—O12 | −4.7 (2) | C4—N41—N42—C43 | 178.34 (14) |
O11—C11—O12—C12 | 1.0 (2) | N41—N42—C43—C44 | 1.16 (18) |
C1—C11—O12—C12 | −177.91 (13) | N41—N42—C43—C431 | −178.13 (15) |
C11—O12—C12—C121 | 174.31 (15) | N42—C43—C44—C45 | −0.30 (19) |
C1—C2—C3—C4 | −1.3 (2) | C431—C43—C44—C45 | 178.91 (17) |
C2—C3—C4—C5 | 1.5 (2) | C43—C44—C45—N41 | −0.71 (18) |
C2—C3—C4—N41 | 179.67 (14) | C43—C44—C45—N45 | 179.94 (16) |
C3—C4—C5—C6 | −0.4 (2) | N42—N41—C45—C44 | 1.49 (18) |
N41—C4—C5—C6 | −178.55 (15) | C4—N41—C45—C44 | −178.49 (16) |
C4—C5—C6—C1 | −1.1 (3) | N42—N41—C45—N45 | −179.10 (14) |
C2—C1—C6—C5 | 1.3 (2) | C4—N41—C45—N45 | 0.9 (3) |
C11—C1—C6—C5 | −178.66 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N45—H45A···O11i | 0.94 | 2.30 | 3.1190 (19) | 146 |
N45—H45B···O11ii | 0.94 | 2.11 | 3.0252 (18) | 165 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x, y, z+1. |
C15H19N3O2 | F(000) = 584 |
Mr = 273.33 | Dx = 1.267 Mg m−3 |
Monoclinic, P21/c | Melting point: 503 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 6.1272 (2) Å | Cell parameters from 3269 reflections |
b = 11.6374 (3) Å | θ = 2.7–27.5° |
c = 20.3182 (7) Å | µ = 0.09 mm−1 |
β = 98.629 (2)° | T = 120 K |
V = 1432.38 (8) Å3 | Lath, yellow |
Z = 4 | 0.48 × 0.22 × 0.12 mm |
Bruker–Nonius KappaCCD diffractometer | 3269 independent reflections |
Radiation source: Bruker-Nonius FR591 rotating anode | 2353 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.050 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 2.7° |
ϕ and ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −15→15 |
Tmin = 0.971, Tmax = 0.990 | l = −26→26 |
24177 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0591P)2 + 0.2591P] where P = (Fo2 + 2Fc2)/3 |
3269 reflections | (Δ/σ)max < 0.001 |
185 parameters | Δρmax = 0.17 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
C15H19N3O2 | V = 1432.38 (8) Å3 |
Mr = 273.33 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.1272 (2) Å | µ = 0.09 mm−1 |
b = 11.6374 (3) Å | T = 120 K |
c = 20.3182 (7) Å | 0.48 × 0.22 × 0.12 mm |
β = 98.629 (2)° |
Bruker–Nonius KappaCCD diffractometer | 3269 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2353 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.990 | Rint = 0.050 |
24177 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.17 e Å−3 |
3269 reflections | Δρmin = −0.34 e Å−3 |
185 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.3898 (2) | 0.38814 (11) | 0.45106 (7) | 0.0207 (3) | |
C11 | 0.3351 (2) | 0.31923 (12) | 0.50789 (7) | 0.0216 (3) | |
O11 | 0.46286 (16) | 0.25592 (8) | 0.54173 (5) | 0.0277 (3) | |
O12 | 0.12389 (15) | 0.33286 (8) | 0.51719 (5) | 0.0263 (2) | |
C12 | 0.0550 (2) | 0.26119 (14) | 0.56860 (8) | 0.0312 (4) | |
C2 | 0.2466 (2) | 0.47029 (11) | 0.41881 (7) | 0.0220 (3) | |
C3 | 0.3021 (2) | 0.53156 (11) | 0.36537 (7) | 0.0228 (3) | |
C4 | 0.5056 (2) | 0.51185 (11) | 0.34451 (7) | 0.0202 (3) | |
N41 | 0.56941 (18) | 0.57232 (9) | 0.28996 (6) | 0.0216 (3) | |
N42 | 0.70612 (19) | 0.51678 (10) | 0.25157 (6) | 0.0227 (3) | |
C43 | 0.7550 (2) | 0.59636 (12) | 0.20927 (7) | 0.0216 (3) | |
C431 | 0.8967 (2) | 0.56660 (12) | 0.15658 (7) | 0.0238 (3) | |
C432 | 1.0568 (2) | 0.46868 (13) | 0.18120 (8) | 0.0284 (3) | |
C433 | 0.7460 (3) | 0.53063 (14) | 0.09264 (8) | 0.0330 (4) | |
C434 | 1.0317 (2) | 0.67230 (13) | 0.14224 (8) | 0.0330 (4) | |
C44 | 0.6570 (2) | 0.70301 (12) | 0.22032 (7) | 0.0245 (3) | |
C45 | 0.5411 (2) | 0.68602 (11) | 0.27208 (7) | 0.0221 (3) | |
N45 | 0.40923 (19) | 0.75908 (10) | 0.30303 (6) | 0.0263 (3) | |
C5 | 0.6491 (2) | 0.42901 (12) | 0.37607 (7) | 0.0215 (3) | |
C6 | 0.5913 (2) | 0.36799 (12) | 0.42921 (7) | 0.0221 (3) | |
H12A | 0.0961 | 0.1812 | 0.5616 | 0.047* | |
H12B | −0.1055 | 0.2666 | 0.5667 | 0.047* | |
H12C | 0.1277 | 0.2873 | 0.6123 | 0.047* | |
H2 | 0.1093 | 0.4844 | 0.4337 | 0.026* | |
H3 | 0.2026 | 0.5865 | 0.3431 | 0.027* | |
H43A | 1.1456 | 0.4908 | 0.2235 | 0.043* | |
H43B | 1.1543 | 0.4537 | 0.1481 | 0.043* | |
H43C | 0.9725 | 0.3991 | 0.1877 | 0.043* | |
H43D | 0.6630 | 0.4617 | 0.1013 | 0.050* | |
H43E | 0.8359 | 0.5141 | 0.0578 | 0.050* | |
H43F | 0.6428 | 0.5931 | 0.0780 | 0.050* | |
H43G | 0.9313 | 0.7344 | 0.1248 | 0.049* | |
H43H | 1.1271 | 0.6524 | 0.1093 | 0.049* | |
H43I | 1.1227 | 0.6977 | 0.1835 | 0.049* | |
H44 | 0.6690 | 0.7725 | 0.1966 | 0.029* | |
H45A | 0.4355 | 0.7588 | 0.3492 | 0.032* | |
H45B | 0.4013 | 0.8325 | 0.2856 | 0.032* | |
H5 | 0.7861 | 0.4146 | 0.3611 | 0.026* | |
H6 | 0.6895 | 0.3120 | 0.4510 | 0.027* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0216 (7) | 0.0207 (7) | 0.0195 (7) | −0.0020 (5) | 0.0019 (6) | −0.0032 (5) |
C11 | 0.0224 (7) | 0.0226 (7) | 0.0196 (7) | −0.0007 (5) | 0.0027 (6) | −0.0037 (6) |
O11 | 0.0274 (5) | 0.0319 (6) | 0.0239 (6) | 0.0041 (4) | 0.0042 (4) | 0.0055 (4) |
O12 | 0.0234 (5) | 0.0302 (6) | 0.0267 (6) | 0.0017 (4) | 0.0080 (4) | 0.0066 (4) |
C12 | 0.0286 (8) | 0.0379 (9) | 0.0289 (9) | −0.0007 (6) | 0.0101 (7) | 0.0095 (7) |
C2 | 0.0196 (6) | 0.0223 (7) | 0.0246 (8) | −0.0005 (5) | 0.0048 (6) | −0.0019 (6) |
C3 | 0.0239 (7) | 0.0202 (7) | 0.0240 (8) | 0.0030 (5) | 0.0031 (6) | 0.0004 (6) |
C4 | 0.0230 (7) | 0.0186 (7) | 0.0193 (7) | −0.0026 (5) | 0.0039 (5) | −0.0015 (5) |
N41 | 0.0236 (6) | 0.0183 (6) | 0.0241 (7) | 0.0016 (5) | 0.0077 (5) | −0.0006 (5) |
N42 | 0.0244 (6) | 0.0212 (6) | 0.0239 (6) | 0.0017 (5) | 0.0077 (5) | −0.0003 (5) |
C43 | 0.0211 (6) | 0.0218 (7) | 0.0214 (7) | −0.0017 (5) | 0.0014 (6) | 0.0013 (6) |
C431 | 0.0258 (7) | 0.0238 (7) | 0.0226 (8) | −0.0005 (6) | 0.0066 (6) | 0.0009 (6) |
C432 | 0.0304 (8) | 0.0292 (8) | 0.0273 (8) | 0.0030 (6) | 0.0095 (6) | −0.0018 (6) |
C433 | 0.0369 (8) | 0.0372 (9) | 0.0252 (8) | −0.0017 (7) | 0.0055 (7) | −0.0013 (7) |
C434 | 0.0322 (8) | 0.0314 (8) | 0.0381 (10) | −0.0017 (7) | 0.0141 (7) | 0.0044 (7) |
C44 | 0.0268 (7) | 0.0218 (7) | 0.0248 (8) | 0.0009 (6) | 0.0035 (6) | 0.0039 (6) |
C45 | 0.0229 (7) | 0.0194 (7) | 0.0236 (7) | 0.0011 (5) | 0.0019 (6) | 0.0010 (6) |
N45 | 0.0333 (7) | 0.0202 (6) | 0.0264 (7) | 0.0064 (5) | 0.0082 (5) | 0.0028 (5) |
C5 | 0.0197 (6) | 0.0223 (7) | 0.0229 (8) | 0.0002 (5) | 0.0043 (6) | −0.0029 (6) |
C6 | 0.0232 (7) | 0.0206 (7) | 0.0218 (7) | 0.0026 (5) | 0.0008 (6) | −0.0010 (6) |
C1—C2 | 1.3930 (19) | C431—C434 | 1.534 (2) |
C1—C6 | 1.3931 (18) | C431—C433 | 1.535 (2) |
C1—C11 | 1.4849 (19) | C431—C432 | 1.537 (2) |
C11—O11 | 1.2112 (16) | C432—H43A | 0.98 |
C11—O12 | 1.3448 (15) | C432—H43B | 0.98 |
O12—C12 | 1.4483 (16) | C432—H43C | 0.98 |
C12—H12A | 0.98 | C433—H43D | 0.98 |
C12—H12B | 0.98 | C433—H43E | 0.98 |
C12—H12C | 0.98 | C433—H43F | 0.98 |
C2—C3 | 1.3834 (19) | C434—H43G | 0.98 |
C2—H2 | 0.95 | C434—H43H | 0.98 |
C3—C4 | 1.3947 (18) | C434—H43I | 0.98 |
C3—H3 | 0.95 | C44—C45 | 1.369 (2) |
C4—C5 | 1.3945 (19) | C44—H44 | 0.95 |
C4—N41 | 1.4166 (17) | C45—N45 | 1.3867 (17) |
N41—C45 | 1.3762 (17) | N45—H45A | 0.93 |
N41—N42 | 1.3871 (15) | N45—H45B | 0.92 |
N42—C43 | 1.3279 (17) | C5—C6 | 1.3820 (19) |
C43—C44 | 1.4114 (19) | C5—H5 | 0.95 |
C43—C431 | 1.5162 (19) | C6—H6 | 0.95 |
C2—C1—C6 | 119.43 (13) | C433—C431—C432 | 110.29 (12) |
C2—C1—C11 | 122.46 (12) | C431—C432—H43A | 109.5 |
C6—C1—C11 | 118.11 (12) | C431—C432—H43B | 109.5 |
O11—C11—O12 | 123.07 (12) | H43A—C432—H43B | 109.5 |
O11—C11—C1 | 124.60 (12) | C431—C432—H43C | 109.5 |
O12—C11—C1 | 112.32 (11) | H43A—C432—H43C | 109.5 |
C11—O12—C12 | 115.10 (11) | H43B—C432—H43C | 109.5 |
O12—C12—H12A | 109.5 | C431—C433—H43D | 109.5 |
O12—C12—H12B | 109.5 | C431—C433—H43E | 109.5 |
H12A—C12—H12B | 109.5 | H43D—C433—H43E | 109.5 |
O12—C12—H12C | 109.5 | C431—C433—H43F | 109.5 |
H12A—C12—H12C | 109.5 | H43D—C433—H43F | 109.5 |
H12B—C12—H12C | 109.5 | H43E—C433—H43F | 109.5 |
C3—C2—C1 | 120.75 (12) | C431—C434—H43G | 109.5 |
C3—C2—H2 | 119.6 | C431—C434—H43H | 109.5 |
C1—C2—H2 | 119.6 | H43G—C434—H43H | 109.5 |
C2—C3—C4 | 119.34 (13) | C431—C434—H43I | 109.5 |
C2—C3—H3 | 120.3 | H43G—C434—H43I | 109.5 |
C4—C3—H3 | 120.3 | H43H—C434—H43I | 109.5 |
C5—C4—C3 | 120.30 (12) | C45—C44—C43 | 106.11 (12) |
C5—C4—N41 | 118.31 (11) | C45—C44—H44 | 126.9 |
C3—C4—N41 | 121.37 (12) | C43—C44—H44 | 126.9 |
C45—N41—N42 | 111.25 (10) | C44—C45—N41 | 106.39 (12) |
C45—N41—C4 | 130.19 (11) | C44—C45—N45 | 131.64 (13) |
N42—N41—C4 | 118.00 (10) | N41—C45—N45 | 121.92 (12) |
C43—N42—N41 | 104.66 (10) | C45—N45—H45A | 115.6 |
N42—C43—C44 | 111.56 (12) | C45—N45—H45B | 113.2 |
N42—C43—C431 | 120.43 (12) | H45A—N45—H45B | 112.5 |
C44—C43—C431 | 128.00 (12) | C6—C5—C4 | 119.79 (12) |
C43—C431—C434 | 109.44 (12) | C6—C5—H5 | 120.1 |
C43—C431—C433 | 108.92 (11) | C4—C5—H5 | 120.1 |
C434—C431—C433 | 109.32 (12) | C5—C6—C1 | 120.37 (13) |
C43—C431—C432 | 110.15 (11) | C5—C6—H6 | 119.8 |
C434—C431—C432 | 108.70 (11) | C1—C6—H6 | 119.8 |
C2—C1—C11—O11 | −171.87 (13) | N42—C43—C431—C434 | −148.58 (13) |
C6—C1—C11—O11 | 8.9 (2) | C44—C43—C431—C434 | 32.7 (2) |
C2—C1—C11—O12 | 9.41 (19) | N42—C43—C431—C433 | 91.96 (15) |
C6—C1—C11—O12 | −169.80 (12) | C44—C43—C431—C433 | −86.79 (17) |
O11—C11—O12—C12 | −3.30 (19) | N42—C43—C431—C432 | −29.13 (18) |
C1—C11—O12—C12 | 175.44 (11) | C44—C43—C431—C432 | 152.12 (14) |
C6—C1—C2—C3 | 0.2 (2) | N42—C43—C44—C45 | −0.43 (17) |
C11—C1—C2—C3 | −179.00 (13) | C431—C43—C44—C45 | 178.41 (13) |
C1—C2—C3—C4 | −1.1 (2) | C43—C44—C45—N41 | −0.64 (15) |
C2—C3—C4—C5 | 1.7 (2) | C43—C44—C45—N45 | −178.23 (15) |
C2—C3—C4—N41 | 179.87 (12) | N42—N41—C45—C44 | 1.49 (16) |
C5—C4—N41—C45 | −141.44 (14) | C4—N41—C45—C44 | 172.65 (13) |
C3—C4—N41—C45 | 40.4 (2) | N42—N41—C45—N45 | 179.37 (12) |
C5—C4—N41—N42 | 29.23 (18) | C4—N41—C45—N45 | −9.5 (2) |
C3—C4—N41—N42 | −148.96 (13) | C3—C4—C5—C6 | −1.4 (2) |
C45—N41—N42—C43 | −1.72 (15) | N41—C4—C5—C6 | −179.64 (12) |
C4—N41—N42—C43 | −174.08 (12) | C4—C5—C6—C1 | 0.5 (2) |
N41—N42—C43—C44 | 1.29 (15) | C2—C1—C6—C5 | 0.1 (2) |
N41—N42—C43—C431 | −177.65 (12) | C11—C1—C6—C5 | 179.34 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N45—H45A···O11i | 0.93 | 2.22 | 3.1388 (16) | 172 |
N45—H45B···N42ii | 0.92 | 2.34 | 3.2386 (17) | 166 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, y+1/2, −z+1/2. |
C11H11N3O2·H2O | F(000) = 496 |
Mr = 235.24 | Dx = 1.400 Mg m−3 |
Monoclinic, P21/n | Melting point: 468 K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 8.0166 (2) Å | Cell parameters from 2551 reflections |
b = 7.5082 (2) Å | θ = 2.2–27.5° |
c = 18.5507 (5) Å | µ = 0.10 mm−1 |
β = 91.8140 (16)° | T = 120 K |
V = 1116.01 (5) Å3 | Block, yellow |
Z = 4 | 0.54 × 0.36 × 0.18 mm |
Bruker–Nonius KappaCCD diffractometer | 2551 independent reflections |
Radiation source: Bruker-Nonius FR591 rotating anode | 2037 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 2.2° |
ϕ and ω scans | h = −7→10 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −9→9 |
Tmin = 0.961, Tmax = 0.982 | l = −24→24 |
11603 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0673P)2 + 0.2827P] where P = (Fo2 + 2Fc2)/3 |
2551 reflections | (Δ/σ)max < 0.001 |
155 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
C11H11N3O2·H2O | V = 1116.01 (5) Å3 |
Mr = 235.24 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.0166 (2) Å | µ = 0.10 mm−1 |
b = 7.5082 (2) Å | T = 120 K |
c = 18.5507 (5) Å | 0.54 × 0.36 × 0.18 mm |
β = 91.8140 (16)° |
Bruker–Nonius KappaCCD diffractometer | 2551 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2037 reflections with I > 2σ(I) |
Tmin = 0.961, Tmax = 0.982 | Rint = 0.031 |
11603 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.32 e Å−3 |
2551 reflections | Δρmin = −0.28 e Å−3 |
155 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.17150 (16) | 0.63530 (18) | 0.46782 (7) | 0.0171 (3) | |
C11 | 0.17354 (17) | 0.66367 (18) | 0.54763 (7) | 0.0180 (3) | |
O11 | 0.06887 (13) | 0.75336 (14) | 0.57694 (5) | 0.0255 (3) | |
O12 | 0.29894 (12) | 0.58321 (15) | 0.58222 (5) | 0.0246 (3) | |
C2 | 0.29764 (17) | 0.54166 (19) | 0.43474 (7) | 0.0184 (3) | |
C3 | 0.29292 (17) | 0.51800 (19) | 0.36044 (7) | 0.0187 (3) | |
C4 | 0.16013 (17) | 0.58775 (18) | 0.31982 (7) | 0.0171 (3) | |
C5 | 0.03112 (17) | 0.67883 (19) | 0.35215 (7) | 0.0191 (3) | |
C6 | 0.03817 (17) | 0.70322 (18) | 0.42628 (7) | 0.0188 (3) | |
N41 | 0.15166 (14) | 0.56078 (15) | 0.24359 (6) | 0.0179 (3) | |
N42 | 0.00292 (15) | 0.50508 (16) | 0.21120 (6) | 0.0213 (3) | |
C13 | 0.03479 (18) | 0.49248 (18) | 0.14122 (7) | 0.0204 (3) | |
C431 | −0.0995 (2) | 0.4290 (2) | 0.08958 (8) | 0.0293 (4) | |
C44 | 0.19977 (17) | 0.54112 (19) | 0.12778 (7) | 0.0200 (3) | |
C45 | 0.27172 (17) | 0.58320 (17) | 0.19403 (7) | 0.0169 (3) | |
N45 | 0.43384 (14) | 0.63540 (16) | 0.21309 (6) | 0.0202 (3) | |
O1 | 0.29447 (13) | 0.58432 (14) | 0.72233 (5) | 0.0243 (3) | |
H12 | 0.2917 | 0.5930 | 0.6331 | 0.037* | |
H2 | 0.3875 | 0.4936 | 0.4631 | 0.022* | |
H3 | 0.3795 | 0.4549 | 0.3377 | 0.022* | |
H5 | −0.0604 | 0.7236 | 0.3239 | 0.023* | |
H6 | −0.0484 | 0.7666 | 0.4489 | 0.023* | |
H43A | −0.0710 | 0.3101 | 0.0720 | 0.044* | |
H43B | −0.1096 | 0.5116 | 0.0488 | 0.044* | |
H43C | −0.2058 | 0.4237 | 0.1142 | 0.044* | |
H44 | 0.2513 | 0.5444 | 0.0824 | 0.024* | |
H45A | 0.4399 | 0.7197 | 0.2483 | 0.024* | |
H45B | 0.4888 | 0.6763 | 0.1742 | 0.024* | |
H1A | 0.1985 | 0.5509 | 0.7423 | 0.036* | |
H1B | 0.3772 | 0.5174 | 0.7419 | 0.036* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0163 (7) | 0.0208 (7) | 0.0141 (6) | −0.0033 (5) | 0.0011 (5) | 0.0002 (5) |
C11 | 0.0155 (6) | 0.0235 (7) | 0.0151 (6) | −0.0031 (5) | 0.0009 (5) | 0.0001 (5) |
O11 | 0.0249 (6) | 0.0345 (6) | 0.0173 (5) | 0.0049 (5) | 0.0032 (4) | −0.0051 (4) |
O12 | 0.0204 (5) | 0.0404 (6) | 0.0128 (5) | 0.0045 (4) | −0.0003 (4) | −0.0007 (4) |
C2 | 0.0147 (7) | 0.0257 (7) | 0.0146 (6) | −0.0004 (5) | −0.0008 (5) | 0.0014 (5) |
C3 | 0.0154 (7) | 0.0251 (7) | 0.0156 (6) | 0.0005 (5) | 0.0024 (5) | −0.0010 (5) |
C4 | 0.0186 (7) | 0.0199 (7) | 0.0128 (6) | −0.0039 (5) | 0.0010 (5) | 0.0004 (5) |
C5 | 0.0170 (6) | 0.0238 (7) | 0.0165 (6) | 0.0001 (5) | −0.0018 (5) | 0.0017 (5) |
C6 | 0.0166 (7) | 0.0225 (7) | 0.0175 (6) | 0.0005 (5) | 0.0029 (5) | −0.0003 (5) |
N41 | 0.0157 (6) | 0.0253 (6) | 0.0125 (5) | −0.0019 (5) | −0.0005 (4) | 0.0002 (4) |
N42 | 0.0178 (6) | 0.0305 (7) | 0.0154 (5) | −0.0018 (5) | −0.0027 (4) | −0.0002 (5) |
C13 | 0.0228 (7) | 0.0222 (7) | 0.0160 (6) | 0.0022 (6) | −0.0019 (5) | 0.0006 (5) |
C431 | 0.0246 (8) | 0.0437 (10) | 0.0191 (7) | −0.0016 (7) | −0.0046 (6) | −0.0032 (6) |
C44 | 0.0221 (7) | 0.0250 (7) | 0.0131 (6) | 0.0024 (6) | 0.0015 (5) | 0.0004 (5) |
C45 | 0.0181 (7) | 0.0175 (6) | 0.0151 (6) | 0.0007 (5) | 0.0016 (5) | 0.0021 (5) |
N45 | 0.0187 (6) | 0.0267 (6) | 0.0152 (5) | −0.0046 (5) | 0.0024 (4) | 0.0006 (4) |
O1 | 0.0181 (5) | 0.0392 (6) | 0.0157 (5) | −0.0017 (4) | 0.0004 (4) | 0.0020 (4) |
C1—C2 | 1.3902 (19) | N41—C45 | 1.3623 (17) |
C1—C6 | 1.3943 (19) | N41—N42 | 1.3828 (16) |
C1—C11 | 1.4953 (17) | N42—C13 | 1.3343 (17) |
C11—O11 | 1.2174 (17) | C13—C44 | 1.402 (2) |
C11—O12 | 1.3215 (16) | C13—C431 | 1.4961 (19) |
O12—H12 | 0.95 | C431—H43A | 0.98 |
C2—C3 | 1.3891 (18) | C431—H43B | 0.98 |
C2—H2 | 0.95 | C431—H43C | 0.98 |
C3—C4 | 1.3873 (19) | C44—C45 | 1.3778 (18) |
C3—H3 | 0.95 | C44—H44 | 0.95 |
C4—C5 | 1.3915 (19) | C45—N45 | 1.3924 (17) |
C4—N41 | 1.4281 (16) | N45—H45A | 0.91 |
C5—C6 | 1.3867 (18) | N45—H45B | 0.91 |
C5—H5 | 0.95 | O1—H1A | 0.90 |
C6—H6 | 0.95 | O1—H1B | 0.90 |
C2—C1—C6 | 119.78 (12) | C45—N41—C4 | 129.66 (11) |
C2—C1—C11 | 121.58 (12) | N42—N41—C4 | 119.11 (11) |
C6—C1—C11 | 118.63 (12) | C13—N42—N41 | 104.78 (11) |
O11—C11—O12 | 124.09 (11) | N42—C13—C44 | 111.43 (12) |
O11—C11—C1 | 122.34 (12) | N42—C13—C431 | 119.31 (13) |
O12—C11—C1 | 113.58 (11) | C44—C13—C431 | 129.25 (12) |
C11—O12—H12 | 112.2 | C13—C431—H43A | 109.5 |
C3—C2—C1 | 120.35 (12) | C13—C431—H43B | 109.5 |
C3—C2—H2 | 119.8 | H43A—C431—H43B | 109.5 |
C1—C2—H2 | 119.8 | C13—C431—H43C | 109.5 |
C4—C3—C2 | 119.14 (12) | H43A—C431—H43C | 109.5 |
C4—C3—H3 | 120.4 | H43B—C431—H43C | 109.5 |
C2—C3—H3 | 120.4 | C45—C44—C13 | 105.76 (12) |
C3—C4—C5 | 121.30 (11) | C45—C44—H44 | 127.1 |
C3—C4—N41 | 119.73 (12) | C13—C44—H44 | 127.1 |
C5—C4—N41 | 118.93 (12) | N41—C45—C44 | 106.79 (12) |
C6—C5—C4 | 119.00 (12) | N41—C45—N45 | 122.49 (11) |
C6—C5—H5 | 120.5 | C44—C45—N45 | 130.70 (12) |
C4—C5—H5 | 120.5 | C45—N45—H45A | 114.0 |
C5—C6—C1 | 120.41 (12) | C45—N45—H45B | 111.4 |
C5—C6—H6 | 119.8 | H45A—N45—H45B | 108.6 |
C1—C6—H6 | 119.8 | H1A—O1—H1B | 107.8 |
C45—N41—N42 | 111.23 (10) | ||
C2—C1—C11—O11 | 175.98 (13) | C5—C4—N41—C45 | 134.47 (15) |
C6—C1—C11—O11 | −4.8 (2) | C3—C4—N41—N42 | 132.94 (14) |
C2—C1—C11—O12 | −3.78 (19) | C5—C4—N41—N42 | −44.87 (17) |
C6—C1—C11—O12 | 175.45 (12) | C45—N41—N42—C13 | 0.52 (15) |
C6—C1—C2—C3 | 1.1 (2) | C4—N41—N42—C13 | 179.98 (12) |
C11—C1—C2—C3 | −179.71 (13) | N41—N42—C13—C44 | −0.82 (16) |
C1—C2—C3—C4 | −0.5 (2) | N41—N42—C13—C431 | 178.10 (12) |
C2—C3—C4—C5 | −0.8 (2) | N42—C13—C44—C45 | 0.83 (16) |
C2—C3—C4—N41 | −178.52 (12) | C431—C13—C44—C45 | −177.96 (14) |
C3—C4—C5—C6 | 1.4 (2) | N42—N41—C45—C44 | −0.02 (15) |
N41—C4—C5—C6 | 179.22 (12) | C4—N41—C45—C44 | −179.41 (13) |
C4—C5—C6—C1 | −0.9 (2) | N42—N41—C45—N45 | −178.72 (12) |
C2—C1—C6—C5 | −0.4 (2) | C4—N41—C45—N45 | 1.9 (2) |
C11—C1—C6—C5 | −179.61 (13) | C13—C44—C45—N41 | −0.46 (15) |
C3—C4—N41—C45 | −47.7 (2) | C13—C44—C45—N45 | 178.09 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
O12—H12···O1 | 0.95 | 1.66 | 2.6005 (13) | 172 |
O1—H1A···N42i | 0.90 | 1.90 | 2.8002 (16) | 176 |
O1—H1B···N45ii | 0.90 | 2.06 | 2.9556 (15) | 180 |
N45—H45A···N42iii | 0.91 | 2.31 | 3.1446 (17) | 152 |
N45—H45B···O11iv | 0.91 | 2.01 | 2.9020 (15) | 168 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1, −y+1, −z+1; (iii) −x+1/2, y+1/2, −z+1/2; (iv) x+1/2, −y+3/2, z−1/2. |
Experimental details
(I) | (II) | (III) | |
Crystal data | |||
Chemical formula | C13H15N3O2 | C15H19N3O2 | C11H11N3O2·H2O |
Mr | 245.28 | 273.33 | 235.24 |
Crystal system, space group | Triclinic, P1 | Monoclinic, P21/c | Monoclinic, P21/n |
Temperature (K) | 120 | 120 | 120 |
a, b, c (Å) | 7.2228 (4), 8.4433 (3), 10.5938 (5) | 6.1272 (2), 11.6374 (3), 20.3182 (7) | 8.0166 (2), 7.5082 (2), 18.5507 (5) |
α, β, γ (°) | 98.234 (3), 107.609 (2), 97.907 (3) | 90, 98.629 (2), 90 | 90, 91.8140 (16), 90 |
V (Å3) | 598.12 (5) | 1432.38 (8) | 1116.01 (5) |
Z | 2 | 4 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.09 | 0.10 |
Crystal size (mm) | 0.28 × 0.14 × 0.06 | 0.48 × 0.22 × 0.12 | 0.54 × 0.36 × 0.18 |
Data collection | |||
Diffractometer | Bruker–Nonius KappaCCD diffractometer | Bruker–Nonius KappaCCD diffractometer | Bruker–Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) | Multi-scan (SADABS; Sheldrick, 2003) | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.979, 0.994 | 0.971, 0.990 | 0.961, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12140, 2748, 1904 | 24177, 3269, 2353 | 11603, 2551, 2037 |
Rint | 0.052 | 0.050 | 0.031 |
(sin θ/λ)max (Å−1) | 0.652 | 0.651 | 0.650 |
Refinement | |||
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.136, 1.08 | 0.042, 0.112, 1.03 | 0.040, 0.121, 1.10 |
No. of reflections | 2748 | 3269 | 2551 |
No. of parameters | 165 | 185 | 155 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.23, −0.32 | 0.17, −0.34 | 0.32, −0.28 |
Computer programs: COLLECT (Hooft, 1999), DENZO (Otwinowski & Minor, 1997) and COLLECT, DENZO and COLLECT, OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N45—H45A···O11i | 0.94 | 2.30 | 3.1190 (19) | 146 |
N45—H45B···O11ii | 0.94 | 2.11 | 3.0252 (18) | 165 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x, y, z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N45—H45A···O11i | 0.93 | 2.22 | 3.1388 (16) | 172 |
N45—H45B···N42ii | 0.92 | 2.34 | 3.2386 (17) | 166 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, y+1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O12—H12···O1 | 0.95 | 1.66 | 2.6005 (13) | 172 |
O1—H1A···N42i | 0.90 | 1.90 | 2.8002 (16) | 176 |
O1—H1B···N45ii | 0.90 | 2.06 | 2.9556 (15) | 180 |
N45—H45A···N42iii | 0.91 | 2.31 | 3.1446 (17) | 152 |
N45—H45B···O11iv | 0.91 | 2.01 | 2.9020 (15) | 168 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1, −y+1, −z+1; (iii) −x+1/2, y+1/2, −z+1/2; (iv) x+1/2, −y+3/2, z−1/2. |
Acknowledgements
X-ray data were collected at the EPSRC National Crystallography Service, University of Southampton, England. The authors thank the staff for all their help and advice. MN and JC thank the Consejería de Innovación, Ciencia y Empresa (Junta de Andalucía, Spain) and the Universidad de Jaén for financial support. JP thanks COLCIENCIAS and UNIVALLE (Universidad del Valle, Columbia) for financial support that has also supported a short stay at Instituto de Química Orgánica de Síntesis, Universidad Nacional de Rosario. EGM thanks CONICET and Universidad Nacional de Rosario for financial support.
References
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Ferguson, G. (1999). PRPKAPPA. University of Guelph, Canada. Google Scholar
Hooft, R. W. W. (1999). COLLECT. Nonius BV, Delft, The Netherlands. Google Scholar
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As precursors for the synthesis of pyrazolo[1,5-a][1,3,5]benzotriazepines, which are useful as drugs, agrochemicals or dye intermediates (Tachibana & Kaneko, 1989), we have synthesized several 4-(5-aminopyrazol-1-yl)benzoates by construction of the pyrazole ring from 4-hydrazinobenzoic acid and 3-aminocrotononitrile, and report the structures of three substituted 4-pyrazolylbenzoic acid derivatives, ethyl 4-(5-amino-3-methyl-1H-pyrazol-1-yl)benzoate, (I), methyl 4-(5-amino-3-tert-butyl-1H-pyrazol-1-yl)benzoate, (II), and 4-(5-amino-3-methyl-1H-pyrazol-1-yl)benzoic acid monohydrate, (III) (Figs. 1–3).
The intramolecular geometries of compounds (I)–(III) present no unexpected features; the pyrazole rings all exhibit marked bond fixation and the dihedral angles between the two rings in (I)–(III) are 30.1 (2), 34.2 (2) and 46.5 (2)°, respectively. The principal points of interest in the structures of compounds (I)–(III) are the different modes of supramolecular aggregation leading to hydrogen-bonded structures in one, two and three dimensions, respectively.
The supramolecular structure of compound (I) is simple. Amino atom N45 in the molecule at (x, y, z) acts as a hydrogen-bond donor, via H45A and H45B, to atoms O11 in the molecules at (−x, 1 − y, 1 − z) and (x, y, 1 + z), respectively (Table 1). Propagation by translation and inversion of these two hydrogen bonds then generates a chain of edge-fused centrosymmetric rings running parallel to the [001] direction, with R22(20) (Bernstein et al., 1995) rings centred at (0, 1/2, n + 1/2) (where n represents zero or an integer), and R24(8) rings centred at (0, 1/2, n) (n = zero or integer) (Fig. 4). There are no direction-specific interactions between adjacent chains; in particular C—H···π(arene) hydrogen bonds and aromatic π–π stacking interactions are both absent.
The molecules of compound (II) are linked by a combination of N—H···O and N—H···N hydrogen bonds (Table 2); this may be contrasted with compound (I), where N—H···N hydrogen bonds were absent. The molecules are linked into sheets, and the formation of the sheet is readily analysed in terms of a dimeric building block. Amino atom N45 in the molecule at (x, y, z) acts as a hydrogen-bond donor, via H45A, to atom O11 in the molecule at (1 − x, 1 − y, 1 − z), so generating by inversion a dimeric unit characterized by an R22(20) motif. In addition, atoms N45 in the molecules at (x, y, z) and (1 − x, 1 − y, 1 − z), which are components of the R22(20) dimer centred at (1/2, 1/2, 1/2), act as hydrogen-bond donors, via H45B, to the ring atoms N42 of the molecules at (1 − x, 1/2 + y, 1/2 − z) and (x, 1/2 − y, 1/2 + z), respectively, which are themselves components of the dimers centred at (1/2, 1, 0) and (1/2, 0, 1). In a similar way, atoms N42 at (x, y, z) and (1 − x, 1 − y, 1 − z) accept hydrogen bonds from atoms N45 in the molecules at (1 − x, −1/2 + y, 1/2 − z) and (x, 1.5 − y, 1/2 + z), which are components of the dimers centred at (1/2, 0, 0) an (1/2, 1, 1) respectively. Thus each dimer is directly linked, via N—H···N hydrogen bonds, to four adjacent dimers, and propagation of this interaction by the space group leads to the formation of a sheet parallel to (100) built form alternating R22(20) and R66(32) rings, where both ring types are centrosymmetric (Fig. 5). There are no direction-specific interactions between adjacent sheets, nor is there any interweaving of adjacent sheets, despite the occurrence of the large R66(32) rings; interweaving is prevented by the effective masking of the large rings by pairs of tert-butyl groups (Fig. 5).
Compound (III) is a stoichiometric monohydrate, and in the selected asymmetric unit (Fig.3), the components are linked by a rather short and almost linear O—H···O hydrogen bond (Table 3). Four further hydrogen bonds link the molecular components into a single three-dimensional framework structure, whose formation is readily analysed in terms of three independent one-dimensional substructures, only one of which involves the water molecule. In the first substructure, which runs parallel to the [100] direction, water atom O1 at (x, y, z) acts as a hydrogen-bond donor, via H1A and H1B, respectively, to atoms N42 at (−x, 1 − y, 1 − z) and N45 at (1 − x, 1 − y, 1 − z). Propagation by inversion of these two hydrogen bonds then generates a chain of edge-fused centrosymmetric rings with R44(22) rings centred at (n, 1/2, 1/2) (n = zero or integer) and R44(24) rings centred at (n + 1/2, 1/2, 1/2) (n = zero or integer) (Fig. 6).
The second substructure runs parallel to the [010] direction and consists of simple chains built from the organic component only; amino atom N45 at (x, y, z) acts as a hydrogen-bond donor, via H45A, to ring atom N42 at (1/2 − x, 1/2 + y, 1/2 − z), so forming a C(5) chain generated by the 21 screw axis along (1/4, y, 1/4) (Fig. 7). The third substructure is also built from only the organic components, and runs along the [101] direction; amino atom N45 at (x, y, z) acts as a hydrogen-bond donor, this time via H45B, to atom O11 at (1/2 + x, 3/2 − y, −1/2 + z), so forming a C(10) chain generated by the n-glide plane at y = 3/4 (Fig. 8). The combination of the chains along [100], [010] and [101] suffices to link all the molecules into a single three-dimensional framework structure.
Thus, rather modest changes in the peripheral substituents in compounds (I)–(III) are associated with substantial changes both in the patterns of the hydrogen bonds deployed and in the dimensionality of the resulting supramolecular structures.