research papers
Salts of purine
caffeine and theobromine with 2,6-dihydroxybenzoic acid as coformer: structural, theoretical, thermal and spectroscopic studiesaFaculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland, and bDepartment of Polymers, Faculty of Chemical Technology, Institute of Chemical Technology and Engineering, Poznan University of Technology, Berdychowo 4, Poznań 60-965, Poland
*Correspondence e-mail: mateusz.goldyn@amu.edu.pl
The study of various forms of pharmaceutical substances with specific physicochemical properties suitable for putting them on the market is one of the elements of research in the pharmaceutical industry. A large proportion of active pharmaceutical ingredients (APIs) occur in the salt form. The use of an acidic coformer with a given structure and a suitable pKa value towards purine containing a basic imidazole N atom can lead to salt formation. In this work, 2,6-dihydroxybenzoic acid (26DHBA) was used for cocrystallization of theobromine (TBR) and caffeine (CAF). Two novel salts, namely, theobrominium 2,6-dihydroxybenzoate, C7H9N4O2+·C7H5O4− (I), and caffeinium 2,6-dihydroxybenzoate, C8H11N4O2+·C7H5O4− (II), were synthesized. Both salts were obtained independently by slow evaporation from solution, by neat grinding and also by microwave-assisted slurry cocrystallization. Powder X-ray diffraction measurements proved the formation of the new substances. Single-crystal X-ray diffraction studies confirmed proton transfer between the given alkaloid and 26DHBA, and the formation of N—H⋯O hydrogen bonds in both I and II. Unlike the caffeine cations in II, the theobromine cations in I are paired by noncovalent N—H⋯O=C interactions and a cyclic array is observed. As expected, the two hydroxy groups in the 26DHBA anion in both salts are involved in two intramolecular O—H⋯O hydrogen bonds. C—H⋯O and π–π interactions further stabilize the crystal structures of both compounds. Steady-state UV–Vis spectroscopy showed changes in the water solubility of xanthines after ionizable complex formation. The obtained salts I and II were also characterized by theoretical calculations, Fourier-transform IR spectroscopy (FT–IR), thermogravimetric analysis (TGA), (DSC) and elemental analysis.
1. Introduction
Research into different crystalline forms of active pharmaceutical ingredients (APIs) is one of the interests of chemists and engineers in the pharmaceutical industry. Each form of a given drug, such as polymorphs, solvates, hydrates, salts, cocrystals, amorphous forms, etc., have different physicochemical properties due to the molecular arrangement in the solid state (i.e. stability, bioavailability, tabletability, permeability, mechanical properties and dissolution rate) (Carstens et al., 2020). The preferred form of a substance is the crystalline form with the most stable arrangement of molecules (Ghadi et al., 2014). In turn, amorphous substances have limited pharmaceutical use despite their proven better solubility compared to crystalline forms, due to their poor stability and the possibility of transformation into other phases (Hancock & Parks, 2000; Yu, 2001; Banerjee & Brettmann, 2020).
The search for the appropriate form of a drug is often difficult and time-consuming because, on the one hand, its pharmacological action must be maintained or improved and, on the other hand, its physicochemical properties, which have a direct impact on its activity, should be improved (Kumar & Nanda, 2018; Yadav et al., 2009). Many methods are known to improve the physicochemical properties of an API, such as particle size reduction (Fang et al., 2020), synthesis of solid dispersion (Nair et al., 2020; Sareen et al., 2012), nanoparticles (Kumar et al., 2020), self-emulsifying drug delivery (SEEDS) (Pehlivanov, 2020), nanosuspension (Stefan et al., 2020) or advanced lipid technologies (ALT) (Lopez-Toledano et al., 2019). Another method is to introduce guest molecules into the of an API, which is still a very popular method (Dai et al., 2018). This gives an opportunity to create various types of two- or multi-component systems. One of these systems involves molecular complex formation, in which the molecules of both an API and a guest (coformer) are in the neutral form. When both of these substances and the complex which they form are in the solid form, under normal conditions, we can obtain a cocrystal (Byrn et al., 2017). There is also the possibility of proton transfer between an API and coformer, leading to salt formation when certain conditions are met, such as a suitable ΔpKa value or the structure of the compound (type and position of functional groups). The formation of complexes of this type (multi-component crystal) in comparison to pure substances (single-component crystal) most often leads to changes in physicochemical properties due to rearrangement of the molecules in the (Schultheiss & Newman, 2009).
The use of acidic coformers with a given pKa value for purine containing an imidazole basic N atom may lead to the formation of an ionizable complex. In this article, 2,6-dihydroxybenzoic acid (26DHBA), the strongest of the dihydroxybenzoic acids, was used for cocrystallization with theobromine (TBR) and caffeine (CAF) (Fig. 1). The crystal structures of the title salts were determined by single-crystal X-ray diffraction. The powders were also characterized by powder X-ray diffraction, thermogravimetric analysis, UV–Vis and Fourier-transform IR spectroscopy, and elemental analysis. Theoretical studies were also performed for the title salts.
2. Experimental
2.1. Materials
Theobromine (TBR) and caffeine (CAF) were purchased from Swiss Herbal and Coffeine Shop, respectively. 2,6-Dihydroxybenzoic acid (26DHBA) was obtained from TriMen Chemicals. All substances were used without prior purification. Millipore distilled water (18 MΩ) was used in all UV–Vis analyses.
2.2. Synthesis and crystallization
2.2.1. Cocrystallization from solution
Theobromine (13.3 mg, 0.074 mmol) and 2,6-dihydroxybenzoic acid (11.5 mg, 0.075 mmol) were dissolved in an isopropanol–water solution by heating, and single crystals of I were obtained by slow evaporation. Caffeine (27.5 mg, 0.14 mmol) and 2,6-dihydroxybenzoic acid (21.7 mg, 0.14 mmol) formed II by slow evaporation from an acetonitrile solution.
2.2.2. Cocrystallization by grinding
Neat grinding experiments were performed using an oscillatory ball mill Retsch MM300. TBR (8.8 mg, 48.8 µmol) with 26DHBA (7.5 mg, 48.7 µmol) and CAF (10.8 mg, 55.6 µmol) with 26DHBA (8.4 mg, 54.5 µmol) were ground with a 6.35 mm stainless steel ball. Each experiment lasted 30 min at a frequency of 25 Hz.
2.2.3. Microwave-assisted slurry cocrystallization
The Discover LabMate reactor was used as a microwave irradiation source for cocrystallization experiments. The alkaloid and the acid in stoichiometric ratios were placed in glass vials together with a magnetic stirrer bar, and then a specific volume of the appropriate solvent was added. Water, methanol, acetonitrile and ethyl acetate were used as solvents. The amounts of the substrates and solvents used in the microwave-assisted cocrystallizations are given in Tables S1 and S2 (see supporting information). The experiments with the slurries containing theobromine and 2,6-dihydroxybenzoic acid were carried out at 60 °C for 5 min with continuous stirring at 300 rpm. In turn, the experiments with samples containing caffeine were carried out at 80 °C for 3 min with a stirring speed at 300 rpm. The microwave potency needed to reach the desired temperature and maintain it during the reaction for a certain time was adjusted automatically by the apparatus. The solids obtained were dried under ambient conditions and characterized by powder X-ray diffraction (PXRD).
2.3. Refinement
Crystal data, data collection and structure +·(26DHBA)− (I) and (CAF-H)+·(26DHBA)− (II) are summarized in Table 1. H atoms were located in a difference Fourier map and refined with isotropic displacement parameters. In the final model, chosen distances were restrained in both structures.
details for (TBR-H)2.4. Powder X-ray diffraction (PXRD)
Low-temperature powder experiments using an Oxford Diffraction SuperNova diffractometer with a Cu Kα radiation source for samples from a solvent, neat grinding and microwave-assisted slurry cocrystallizations were performed. CrysAlis PRO was used for data collection (Rigaku OD, 2019). Experimental conditions: scanning intervals = 0–50° (2Θ), time per step = 0.5 s and step size = 0.01° θ. Theoretical powder patterns were determined using Mercury (Macrae et al., 2020). Parameters used for simulation: step size = 0.01° θ and width at half height (FWHM) = 0.2. The Kdif software (http://kdiff3.sourceforge.net/) was used for analysis of the powder patterns.
2.5. Vibrational spectroscopy (FT–IR)
FT–IR spectra were recorded in KBr pellets in the range 4000-400 cm−1 using a Bruker IFS 66v/S instrument, with a resolution of 2 cm−1. Each spectrum was accumulated by the acquisition of 64 scans.
2.6. Theoretical calculations
Density functional theory (DFT) calculations were performed using the GAUSSIAN16 program package (Frisch et al., 2016). The APF-D hybrid DFT method including dispersion (Austin et al., 2012) and the 6-311++G(d,p) basis set (Wiberg, 1986) were employed to obtain the optimized geometry and vibrational wavenumbers. The APF-D method was chosen as one of the best for determining the molecular geometry of organic molecules, hydrogen-bond interactions and IR spectra, and it had the best compromise between accuracy and computational cost (Foresman & Frisch, 2015). The X-ray geometries of I and II were used as starting points for the calculations. All calculated IR frequencies were real, which confirmed that the optimized structures corresponded to a local energy minimum. The distribution (PED) of the vibrational modes was established using the VEDA 4 program (Jamróz, 2004, 2013). Only contributions to PED greater than 10% were considered.
2.7. Thermal analysis
The thermal stability of the described salts was investigated with a TG 209 F3 Tarsus thermogravimetric analyzer (NETZSCH–Geratebau GmbH, Norderstedt, Germany) in the temperature range from 30 to 600 °C. About 10 mg of sample was placed in a platinum crucible and analyzed with a 10 °C min−1 heating rate under a nitrogen atmosphere (purge of 10 ml min−1 of N2 protection gas and 20 ml min−1 of N2 sample gas). Melting temperatures (Tm) were measured by DSC (Mettler–Toledo DSC1 instrument, Greifensee, Switzerland) under a nitrogen atmosphere with a heating rate of 10 °C min−1 in the temperature range from 30 to 220 °C and were determined from the transition peaks.
2.8. Steady-state absorption spectroscopy
The concentrations of (TBR-H)+·(26DHBA)− (I) and (CAF-H)+·(26DHBA)− (II) in aqueous samples were determined via spectrophotometric assays using an Agilent 8453 UV–Vis spectrophotometer with a scanning range between 200 and 1000 nm, and 1 nm increments. The investigation of the solubility of the salts was performed using UV–Vis spectrophotometric assays. A series of standard solutions of I and II in distilled water at concentrations of 0.0025, 0.005, 0.01, 0.015 and 0.02 mg ml−1 were prepared and used for the preparation of the calibration curves. The recorded UV–Vis spectra exhibited maxima for I and II at 274 nm. The prepared calibration curves were subsequently used for the calculation of the solubility of the salts by measuring absorbance. Saturated samples of I and II were prepared by mixing 15 mg of the alkaloid derivative with 3 ml of distilled water at room temperature for 1 h, using an ultrasound bath. Saturation of the solutions was indicated by the presence of undissolved material. The spectrophotometric measurements were made in triplicate.
3. Results and discussion
3.1. design – Cambridge Structural Database (CSD) analysis
In the initial stage of designing the ΔpKa values for the discussed systems (Table 2), as they are in the range −1 to 4 (Cruz-Cabeza, 2012). However, much information can be gained by an analysis of solids containing substances that have been deposited in the CSD (Groom et al., 2016) so far, which will be used for the cocrystal synthesis.
of the two title substances, it was significant to know the forms in which they occur (neutral or ionized), the formation of possible supramolecular synthons and which of them are preferred. It was difficult to unequivocally predict the nature of the product based only on the determined
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2,6-Dihydroxybenzoic acid is the strongest of the dihydroxybenzoic acids, due to the formation of two intermolecular hydrogen bonds in its structure, with the participation of the hydroxy groups and the carboxyl group (pKa = 1.29) (Papadopoulos & Avranas, 1991). In the of the pure acid, we observed either 2,6-dihydroxybenzoic acid molecules in which the carboxyl groups adopt the syn (motif C, monoclinic polymorph; Gdaniec et al., 1994) or anti [motif D, orthorhombic polymorph (MacGillivray & Zaworotko, 1994) and monohydrate (Gdaniec et al., 1994)] conformations (Fig. 2). In cocrystals of this acid, the carboxyl group more often adopts the syn (9 out of 10 entries) than the anti conformation (Table S4 in the supporting information) (Bruno et al., 2002). This acid, however, is more likely to form salts than cocrystals. Of 50 deposited acid–base systems, 44 structures display proton transfer from 2,6-dihydroxybenzoic acid.
In the two deposited structures where 2,6-dihydroxybenzoic acid is in the anionic form, only one intramolecular hydrogen bond with the participation of one hydroxy group was formed, while the proton from the second hydroxy group does not form any strong contact (motif B). However, the formation of two intramolecular noncovalent interactions with the participation of both hydroxy groups is much more preferable, as can be seen in 43 of 44 structures containing the 2,6-dihydroxybenzoate anion and in all structures where this acid is in the neutral form (Tables S3 and S4, respectively, in the supporting information). This observation is consistent with one of the Etter rules of the preferential formation of intramolecular hydrogen bonds over intermolecular interactions in six-membered rings (Etter, 1990). The hydroxy O atoms can also be proton acceptors if additional groups, such as nitrogen (e.g. –NH3+, primary or secondary amine group) or oxygen donors (e.g. –COOH or –OH group, or H2O molecule), appear in their vicinity. In 22 entries containing the 2,6-dihydroxybenzoate anion, at least one hydroxy group acts as a proton acceptor and is involved in the formation of an intermolecular hydrogen bond (details are presented in Table S3 of the supporting information).
Caffeine has only good proton acceptors (carbonyl groups and an imidazole N atom) but does not have good donors. Theobromine, unlike caffeine, has one good donor at the pyrimidine ring. It can participate in the formation of strong amide–amide dimers, which are observed in many theobromine–carboxylic acid systems (Figs. 4a and 4b) (Groom et al., 2016). The imidazole N atom of purine most often interacts noncovalently with the carboxyl group of an acid. In several structures containing theobromine and a carboxylic acid derivative, formation of the amide–carboxylic acid synthon was observed (Figs. 3a and 3b). However, proton migration from the carboxyl group to the imidazole N atom is expected (Fig. 4c), so we do not take into account the possibility of the formation of an amide–carboxylic acid heterosynthon in the theobromine–2,6-dihydroxybenzoic acid system.
Based on the above considerations, it can be concluded with a high degree of probability that caffeine with 2,6-dihydroxybenzoic acid will form an ionized binary system maintained by N—H⋯O− hydrogen bonding. In the of the theobromine–acid complex, it is envisaged that an imidazole–carboxylic acid motif (Fig. 4c) and the amide–amide homosynthon between two xanthine units will be observed. There are two possibilities for the formation of this dimer, i.e. with the exo or the endo carbonyl group of the pyrimidine ring of the alkaloid (Figs. 4a and 4b, respectively). The CSD analysis indicates the preference for the formation of the amide–amide synthon with the participation of the exo-carbonyl group (Groom et al., 2016).
3.2. Synthetic approach
Cocrystallizations with theobromine and caffeine using 2,6-dihydroxybenzoic acid as coformer were performed. Theobromine with this acid can form a salt hydrate or a salt depending on the conditions of cocrystallization from solution or by milling. It has been shown that the monohydrate form (TBR-H)+·(26DHBA)−·H2O was obtained by slow evaporation from an acetonitrile–water solution and by water-assisted grinding (Gołdyn et al., 2019). In turn, cocrystallization by slow evaporation from an isopropanol–water solution leads to the anhydrous form (I). Caffeine with 2,6-dihydroxybenzoic acid forms only the salt (II). The described salt was obtained by cocrystallization in acetonitrile solution. A comparison of the powder patterns shows the possibility of the formation of both discussed compounds via grinding under solvent-free conditions (Figs. 5 and 6).
The use of microwave irradiation seems to be a promising method for obtaining cocrystals or salts. Both of the discussed compounds were obtained by microwave-assisted slurry cocrystallization. Solvents such as water, methanol, acetonitrile and ethyl acetate were used for these experiments. The powder diffraction patterns for the solids obtained by the synthesis using the above method were compared (Figs. 7 and 8). The microwave cocrystallization of caffeine and 2,6-dihydroxybenzoic acid in each case resulted in the formation of II. The use of water and acetonitrile to cocrystallize theobromine with this acid resulted in the desired product I. In turn, when methanol and ethyl acetate were used, peaks not only from salt I, but also from theobromine, were observed, which indicates incomplete conversion of the substrates. In these cases, the reaction should probably be carried out longer or at a higher temperature.
3.3. Structural analysis
Single-crystal X-ray diffraction measurements allowed the determination of the ionic nature of the title substances. The location of the proton in a difference Fourier map is the simplest determinant of the nature of the analyzed complex. However, we should also pay attention to the geometry of the relevant functional groups, since we are dealing with a pair of acid–base compounds. There is a significant difference in the C—O bond lengths in the carboxyl moiety, as opposed to the carboxylate anion, in which these values are similar.
In theobromine salt I, the C=O [C7—O1 = 1.241 (3) Å] and C—O [C7—O2 = 1.297 (3) Å] bond lengths suggest the presence of a carboxylate group. A similar situation occurs in caffeine salt II, where the difference in the C—O bond lengths in the carboxyl group of 2,6-dihydroxybenzoic acid is 0.041 Å [C7—O1 = 1.2530 (16) Å and C7—O2 = 1.2940 (15) Å]. Interestingly, such significant differences result from the different number of strong hydrogen bonds formed by the carboxylate O atoms and the nature of the donors (Chumakov et al., 2006). In I and II, each of the carboxylate O atoms in the 2,6-dihydroxybenzoate anion forms strong intramolecular O—H⋯O hydrogen bonds, while one of them additionally forms a strong hydrogen bond with the imidazole N atom. The formation of the ionic complex is the result of proton migration from the acid group to the imidazole N atom, which is a basic group. There is then a slight but distinct change in the geometry of the imidazole ring. Changes in the values of the valence angles in this ring can confirm the presence of the cationic form of the alkaloid molecule in the (Fig. 9). The list of values of the α, β and γ valence angles in the discussed complexes, together with those already obtained for theobromine and caffeine complexes with hydroxybenzoic acids, are presented in Tables S6 and S7, respectively, in the supporting information.
3.3.1. Theobromine with 2,6-dihydroxybenzoic acid
Theobromine and 2,6-dihydroxybenzoic acid cocrystallize as a salt, I, in a 1:1 stoichiometric ratio in the monoclinic P21/c (Fig. 10a). In the finite four-component systems formed by two alkaloid and two acid molecules are observed (Fig. 10b). The hydroxy groups in the 2,6-dihydroxybenzoate anions are involved in intramolecular O—H⋯O− hydrogen bonds and two S(6) systems are formed (Table 3). As predicted, the acid–alkaloid motif is maintained through charge-assisted N—H⋯O− hydrogen bonds (Fig. 4c). Each pair of theobromine cations forms a centrosymmetric R22(8) homodimer via N—H⋯O interactions with the participation of the endo-O atom (Fig. 4b). The above supramolecular motifs are consistent with earlier assumptions, however, a less expected amide–amide synthon is observed (Figs. 4b and 10b). Weak C—H⋯O hydrogen bonds and π(TBR)⋯π(26DHBA) interactions (Table S8 in the supporting information) are responsible for stabilization of the three-dimensional structure (Fig. 10c).
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3.3.2. Caffeine with 2,6-dihydroxybenzoic acid
Caffeinium 2,6-dihydroxybenzoate salt II crystallizes in the monoclinic P21/n with a caffeine cation and a (26DHBA)− anion in the (Fig. 11a). These ionic species are hydrogen bonded via N—H⋯O− interactions (Fig. 4c and Table 3). As expected, in the of II, the alkaloid and acid form discrete two-component building blocks stacked in a `head-to-tail' manner, sustained by π(CAF)⋯π(26DHBA) forces (Fig. 11b and Table S8). In the anion, two intramolecular O—H⋯O− hydrogen bonds involving hydroxy groups are formed. The O3—C2—C3—C4 and O4—C6—C5—C4 torsion angles [−178.9 (1) and 179.8 (1)°, respectively] show that the phenol groups are practically in the same plane as the arene ring of the 2,6-dihydroxybenzoate anion. C—H⋯O interactions occur between neighbouring two-component building blocks and these additionally stabilize the (CAF-H)+·(26DHBA)− (Fig. 11c).
3.4. Optimized structures and IR spectra
The optimized structures of the isolated molecules of TBR·26DHBA (Ia) and CAF·26DHBA (IIa) are presented in Fig. S2 (see supporting information). The geometrical parameters (bond lengths, bond angles and selected torsion angles) are compared with the XRD results in Table S9.
The mean absolute differences (MAD) between the experimental and calculated bond lengths are 0.011 and 0.013 Å for Ia and IIa, respectively. The MAD of the bond angles for the theobromine complex is 0.94° and for the caffeine complex is 0.99°. In the crystal, the proton is transferred from the acid to the TBR or CAF molecule, which is in contrast to the isolated molecule. Additional calculations for CAF·26DHBA with acetonitrile or water (Fig. S2c) as solvents revealed also the transfer of the proton to the imidazole N atom. We conclude that the localization of the proton depends on intermolecular interactions.
Electron-density distribution can be described in detail with the quantum theory of atoms in molecules (QTAIM) (Bader, 1994; Lu & Chen, 2012). The (3,−1) critical points and the bonding paths between two atoms indicate the existence of hydrogen bonds. Bonding paths and critical points in the structures of Ia and IIa are shown in Fig. 12.
In order to interpret the measured IR spectra (Fig. 13), model spectra were calculated for the optimized structures. Details of these calculations are included in the supporting information (Figs. S3 and S4, and Tables S10–S13). For the salts, in both cases, there are hydrogen bonds of medium strength, and in the experimental IR spectra, broad absorption with three ABC bands was observed. All bonds are noncentrosymmetric, especially N—H⋯O, hence the N—H stretching vibration bands are also visible. In salt I, in the range 3600–2000 cm−1, the absorption is more intense compared to the spectrum of II, which is related to the presence of a weak N—H⋯O (2.881 Å) hydrogen bond in the TBR salt. The most intense band predicted theoretically is connected with the O—H⋯N mode.
The carbonyl group is characterized by a strong absorption band due to C=O stretching vibrations. In the IR spectrum of caffeine, two bands are observed in the carbonyl region at 1701 and 1660 cm−1 (Srivastava & Singh, 2013). After the formation of salt II, these bands are moved towards higher wavenumbers at 1718 and 1673 cm−1, similar to the caffeine and theophylline complexes (Gunasekaran et al., 2005). Stretching modes νCC and νCN in the purine ring are observed at 1565 and 1530 cm−1 for II, and at 1560, 1529 and 1516 cm−1 for I. The imidazole ring νCN vibrations are observed at 1322 cm−1, whereas for TBR·26DHBA they are at 1335 cm−1.
IR spectroscopy provides valuable information on salt formation. For 2,6-dihydroxybenozic acid, the νCOOH mode is observed at 1685 cm−1 (Solomon et al., 2017). The formation of the salt causes the disappearance of this band and two bands are observed for the carboxylate anion. In the experimental spectra of I and II, carboxylate bands are observed at 1579/1390 and 1587/1390 cm−1. Similar bands were observed for salts of 2,6-dihydroxybenzoic acid with nitrogen heterocycles (Solomon et al., 2017) and Dapsone (Li et al., 2020).
3.5. Solubility tests
The modification of active pharmaceutical compounds should lead to an improvement in their physicochemical properties. Much attention has been paid to solubility, an increase of which can affect other properties, such as permeability, bioavailability, dissolution rate and others (Roy & Ghosh, 2020). Solubility measurements were carried out for I and II using UV–Vis spectroscopy. Theobromine is characterized by relatively low solubility in water, i.e. 0.33 mg ml−1 (0.00183 mmol ml−1). Cocrystallization of this alkaloid with 2,6-dihydroxybenzoic acid results in the formation of salt I with a solubility of 1.44 g l−1 (0.00431 mmol ml−1) (Table 4). Thus, this compound is more than twice as soluble in water compared to the pure alkaloid. Earlier studies have shown that the monohydrate equivalent (TBR-H)+·(26DHBA)−·H2O has a 52-fold greater solubility than theobromine (Gołdyn et al., 2019). The anhydrous form of this complex is less soluble than the hydrate analog, which shows that the presence of water in the can significantly improve water solubility.
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Caffeine salt II shows a greater than 12 times lower water solubility (3.133 g l−1, 0.009 mmol ml−1) compared to pure caffeine (20.973 g l−1, 0.108 mmol ml−1). It is worth mentioning the salt hydrate of theophylline with this acid, which, according to UV–Vis studies by Sarma & Saikia (2014), is about 1.2 times more soluble in water than the pure alkaloid (Table 4).
3.6. TGA and DSC analysis
Thermogravimetric analysis (TGA) was used to investigate the thermal stabilities of (TBR-H)+·(26DHBA)− (I) and (CAF-H)+·(26DHBA)− (II). Theobromine salt I displays two decomposition steps. The first, occurring at 194 °C, can be attributed to the loss of 2,6-dihydroxybenzoic acid (weight loss calculated 45.8%, determined 43.7%). The next step at 292 °C is the release of the alkaloid molecules (Fig. 14a). The melting point of this solid, determined by DSC analysis, is 202 °C (Fig. S5 in the supporting information). For comparison, the hydrate form (TBR-H)+·(26DHBA)−·H2O melts at 193 °C (Gołdyn et al., 2019). The decomposition of caffeine salt II is divided into two stages. The first step, related to decomposition of the acid, and the second, related to the decomposition of caffeine, are observed at 181.3 and 238.2 °C, respectively (Fig. 14b). However, it is not possible to determine the loss of mass occurring during the first stage, due to its continuity, and this, in turn, does not allow the method of decomposition of the caffeine salt to be determined. On the DSC curve, a sharp endothermic peak, indicating a melting point of II, is observed at Tm = 183 °C (Fig. S6). 2,6-Dihydroxybenzoic acid melts at about 173 °C (Liao et al., 2010) and the melting points of the salts are between those of this acid and the given alkaloid [the melting points of caffeine and theobromine are 235.6 (Klímová & Leitner, 2012) and 348 °C (Martin et al., 1981), respectively].
4. Conclusions
Cocrystallization of selected purine I and II in a 1:1 ratio. The reactions were carried out in solution, by milling and by microwave-assisted slurry cocrystallization, and the products obtained were confirmed by PXRD analysis. Structural studies showed practically complete success in obtaining the predicted basic supramolecular synthons responsible for the noncovalent association of molecules in the described purine derivatives. Both hydroxy groups in the 2,6-dihydroxybenzoate anion form intramolecular O—H⋯O− hydrogen bonds. Proton migration from the carboxyl group to the imidazole N atom, confirmed by the presence of the carboxylate group and the imidazole-ring geometry, leads to N—H⋯O− hydrogen-bond formation (alkaloid–acid heterosynthon). However, the amide–amide dimer found in I was not formed with the exo-carbonyl group but with the endo-carbonyl group, which is less frequently observed in theobromine–carboxylic acid systems.
with 2,6-dihydroxybenzoic acid as a coformer leads to the ionic complexesFollowing the assumptions based on the ΔpKa values and an analysis of the CSD, ionic complexes were obtained. Theoretical calculations carried out for the isolated system reflected the structure obtained by the single-crystal X-ray diffraction method, apart from the proton transfer from the 2,6-dihydroxybenzoic acid to the alkaloid molecule. The difference in the nature of the compounds obtained by the above methods may result from the role of intermolecular interactions in the solid, which are not taken into account in theoretical calculations. Only additional calculations in which proton transfer was simulated in the presence of a solvent as an environment (acetonitrile or water) gave results consistent with our results and the literature data. IR spectroscopy further confirmed the formation of the salts.
Theobromine with 2,6-dihydroxybenzoic acid forms a salt monohydrate (1:1:1 ratio) or anhydrous salt I (1:1 ratio) depending on the cocrystallization conditions. Both are more soluble in water than the pure alkaloid by 2.4 and 52 times, respectively. Caffeine forms anhydrous ionic complex II with this acid, which is 9 times less soluble in water than caffeine. Theophylline forms with 2,6-dihydroxybenzoic acid a slightly more water-soluble salt hydrate (1:1:1 ratio).
In addition to the above differences, we also observed different thermal properties. Both salts described in this article have melting points higher than the melting point of the coformer but lower than the melting point of the alkaloid. The decomposition of both complexes takes place in two stages, with the release of acid molecules in the first stage. In contrast to the theobromine salt, the release of acid coincides with the degradation of the alkaloid in the caffeine salt, so it was impossible to determine a definite way of this salt decomposition.
Supporting information
https://doi.org/10.1107/S2053229621010883/dg3021sup1.cif
contains datablocks caf-26dhba-1-1b, tbr-26dhba-lag-cryst, global. DOI:Structure factors: contains datablock tbr-26dhba-lag-cryst. DOI: https://doi.org/10.1107/S2053229621010883/dg3021tbr-26dhba-lag-crystsup2.hkl
Structure factors: contains datablock caf-26dhba-1-1b. DOI: https://doi.org/10.1107/S2053229621010883/dg3021caf-26dhba-1-1bsup3.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2053229621010883/dg3021sup4.pdf
Supporting information file. DOI: https://doi.org/10.1107/S2053229621010883/dg3021tbr-26dhba-lag-crystsup5.mol
Supporting information file. DOI: https://doi.org/10.1107/S2053229621010883/dg3021caf-26dhba-1-1bsup6.mol
Supporting information file. DOI: https://doi.org/10.1107/S2053229621010883/dg3021tbr-26dhba-lag-crystsup7.cml
Supporting information file. DOI: https://doi.org/10.1107/S2053229621010883/dg3021caf-26dhba-1-1bsup8.cml
For both structures, data collection: CrysAlis PRO (Rigaku OD, 2019); cell
CrysAlis PRO (Rigaku OD, 2019); data reduction: CrysAlis PRO (Rigaku OD, 2019); program(s) used to solve structure: SHELXT2018 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).C8H11N4O2+·C7H5O4− | Dx = 1.560 Mg m−3 |
Mr = 348.32 | Melting point: 183 K |
Monoclinic, P21/n | Cu Kα radiation, λ = 1.54184 Å |
a = 14.8560 (3) Å | Cell parameters from 6420 reflections |
b = 6.95591 (11) Å | θ = 3.1–75.9° |
c = 15.8927 (3) Å | µ = 1.05 mm−1 |
β = 115.413 (3)° | T = 131 K |
V = 1483.39 (6) Å3 | Block, clear light colourless |
Z = 4 | 0.3 × 0.17 × 0.12 mm |
F(000) = 728 |
Rigaku OD SuperNova Single source diffractometer with an Atlas detector | 3076 independent reflections |
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source | 2815 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.025 |
Detector resolution: 10.5357 pixels mm-1 | θmax = 76.4°, θmin = 3.4° |
ω scans | h = −18→18 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2019) | k = −8→8 |
Tmin = 0.773, Tmax = 1.000 | l = −19→19 |
11899 measured reflections |
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | All H-atom parameters refined |
wR(F2) = 0.096 | w = 1/[σ2(Fo2) + (0.0539P)2 + 0.4452P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
3076 reflections | Δρmax = 0.28 e Å−3 |
290 parameters | Δρmin = −0.18 e Å−3 |
1 restraint |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O6 | 0.87775 (7) | 0.94531 (14) | 0.71150 (6) | 0.0295 (2) | |
O5 | 0.80375 (7) | 1.01841 (13) | 0.40182 (6) | 0.0266 (2) | |
N2 | 0.72024 (8) | 0.86953 (15) | 0.60787 (7) | 0.0224 (2) | |
N4 | 0.55934 (7) | 0.79191 (15) | 0.48111 (7) | 0.0232 (2) | |
H4 | 0.5168 (15) | 0.752 (3) | 0.5118 (15) | 0.064 (6)* | |
N1 | 0.83843 (7) | 0.98771 (15) | 0.55706 (7) | 0.0228 (2) | |
N3 | 0.59383 (8) | 0.86753 (15) | 0.36370 (7) | 0.0228 (2) | |
C9 | 0.81589 (9) | 0.93483 (17) | 0.63069 (8) | 0.0231 (3) | |
C11 | 0.67820 (9) | 0.90751 (17) | 0.44496 (8) | 0.0216 (2) | |
C12 | 0.52493 (9) | 0.79891 (18) | 0.38801 (9) | 0.0247 (3) | |
H12 | 0.4601 (12) | 0.758 (2) | 0.3432 (11) | 0.027 (4)* | |
C10 | 0.65472 (9) | 0.85802 (17) | 0.51619 (8) | 0.0214 (2) | |
C8 | 0.77546 (9) | 0.97551 (17) | 0.46063 (8) | 0.0217 (2) | |
C15 | 0.94090 (9) | 1.0539 (2) | 0.58291 (9) | 0.0281 (3) | |
H15A | 0.9644 (16) | 1.126 (3) | 0.6409 (16) | 0.056 (6)* | |
H15B | 0.9400 (16) | 1.136 (3) | 0.5311 (15) | 0.052 (6)* | |
H15C | 0.9864 (18) | 0.947 (3) | 0.5919 (16) | 0.064 (7)* | |
C13 | 0.69146 (10) | 0.8075 (2) | 0.68087 (9) | 0.0281 (3) | |
H13A | 0.7503 (14) | 0.808 (3) | 0.7393 (13) | 0.037 (5)* | |
H13B | 0.6421 (16) | 0.902 (3) | 0.6872 (15) | 0.054 (6)* | |
H13C | 0.6599 (16) | 0.680 (3) | 0.6668 (14) | 0.050 (5)* | |
C14 | 0.58116 (10) | 0.8956 (2) | 0.26772 (9) | 0.0282 (3) | |
H14A | 0.6294 (14) | 0.818 (3) | 0.2556 (13) | 0.044 (5)* | |
H14B | 0.5940 (16) | 1.030 (3) | 0.2598 (14) | 0.049 (5)* | |
H14C | 0.5130 (16) | 0.864 (3) | 0.2249 (15) | 0.050 (5)* | |
O4 | 0.16405 (7) | 0.53913 (15) | 0.37731 (6) | 0.0297 (2) | |
H4A | 0.2180 (16) | 0.593 (3) | 0.3738 (14) | 0.047 (5)* | |
O2 | 0.45129 (6) | 0.69157 (14) | 0.56176 (6) | 0.0275 (2) | |
O1 | 0.33645 (7) | 0.67306 (15) | 0.41487 (6) | 0.0298 (2) | |
O3 | 0.40547 (7) | 0.61533 (16) | 0.69704 (6) | 0.0311 (2) | |
H3 | 0.4443 (17) | 0.645 (3) | 0.6650 (16) | 0.061 (6)* | |
C1 | 0.28984 (9) | 0.58156 (17) | 0.53489 (8) | 0.0221 (2) | |
C6 | 0.19273 (9) | 0.52601 (18) | 0.47030 (9) | 0.0237 (3) | |
C2 | 0.31443 (9) | 0.56542 (18) | 0.63089 (9) | 0.0236 (3) | |
C5 | 0.12501 (9) | 0.45492 (19) | 0.50127 (9) | 0.0268 (3) | |
H5 | 0.0609 (13) | 0.417 (2) | 0.4566 (12) | 0.029 (4)* | |
C3 | 0.24597 (10) | 0.49508 (19) | 0.66139 (9) | 0.0271 (3) | |
H3A | 0.2650 (14) | 0.486 (3) | 0.7277 (13) | 0.036 (5)* | |
C7 | 0.36193 (9) | 0.65282 (18) | 0.50043 (9) | 0.0233 (3) | |
C4 | 0.15242 (10) | 0.43917 (19) | 0.59610 (10) | 0.0281 (3) | |
H4B | 0.1039 (13) | 0.389 (2) | 0.6177 (12) | 0.033 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O6 | 0.0235 (4) | 0.0408 (5) | 0.0193 (4) | −0.0023 (4) | 0.0045 (4) | 0.0005 (4) |
O5 | 0.0259 (4) | 0.0328 (5) | 0.0220 (4) | −0.0026 (4) | 0.0112 (4) | 0.0004 (3) |
N2 | 0.0208 (5) | 0.0277 (5) | 0.0169 (5) | −0.0002 (4) | 0.0065 (4) | 0.0007 (4) |
N4 | 0.0194 (5) | 0.0273 (5) | 0.0212 (5) | −0.0009 (4) | 0.0072 (4) | 0.0003 (4) |
N1 | 0.0191 (5) | 0.0276 (5) | 0.0198 (5) | −0.0008 (4) | 0.0065 (4) | −0.0002 (4) |
N3 | 0.0202 (5) | 0.0278 (5) | 0.0178 (5) | −0.0002 (4) | 0.0058 (4) | −0.0003 (4) |
C9 | 0.0217 (6) | 0.0245 (6) | 0.0211 (6) | 0.0018 (4) | 0.0073 (5) | −0.0001 (4) |
C11 | 0.0204 (6) | 0.0240 (6) | 0.0179 (5) | 0.0009 (4) | 0.0058 (4) | 0.0002 (4) |
C12 | 0.0202 (6) | 0.0288 (6) | 0.0225 (6) | −0.0006 (5) | 0.0066 (5) | −0.0006 (5) |
C10 | 0.0193 (5) | 0.0232 (5) | 0.0196 (6) | 0.0011 (4) | 0.0065 (4) | 0.0000 (4) |
C8 | 0.0212 (6) | 0.0225 (5) | 0.0198 (6) | 0.0009 (4) | 0.0073 (5) | 0.0000 (4) |
C15 | 0.0191 (6) | 0.0375 (7) | 0.0260 (6) | −0.0036 (5) | 0.0081 (5) | −0.0008 (5) |
C13 | 0.0253 (6) | 0.0385 (7) | 0.0203 (6) | −0.0020 (5) | 0.0096 (5) | 0.0017 (5) |
C14 | 0.0266 (6) | 0.0381 (7) | 0.0177 (6) | −0.0017 (5) | 0.0074 (5) | 0.0012 (5) |
O4 | 0.0249 (5) | 0.0404 (5) | 0.0206 (4) | −0.0012 (4) | 0.0066 (4) | −0.0021 (4) |
O2 | 0.0209 (4) | 0.0368 (5) | 0.0238 (4) | −0.0024 (4) | 0.0088 (3) | 0.0004 (4) |
O1 | 0.0284 (5) | 0.0407 (5) | 0.0208 (4) | −0.0019 (4) | 0.0109 (4) | 0.0012 (4) |
O3 | 0.0223 (4) | 0.0476 (6) | 0.0204 (4) | −0.0025 (4) | 0.0064 (4) | −0.0009 (4) |
C1 | 0.0204 (6) | 0.0239 (6) | 0.0215 (6) | 0.0017 (4) | 0.0084 (5) | 0.0003 (4) |
C6 | 0.0218 (6) | 0.0247 (6) | 0.0227 (6) | 0.0029 (5) | 0.0078 (5) | −0.0016 (5) |
C2 | 0.0207 (6) | 0.0267 (6) | 0.0218 (6) | 0.0031 (4) | 0.0076 (5) | 0.0002 (4) |
C5 | 0.0205 (6) | 0.0298 (6) | 0.0286 (6) | −0.0002 (5) | 0.0091 (5) | −0.0032 (5) |
C3 | 0.0274 (6) | 0.0320 (6) | 0.0241 (6) | 0.0033 (5) | 0.0131 (5) | 0.0020 (5) |
C7 | 0.0230 (6) | 0.0243 (6) | 0.0226 (6) | 0.0016 (4) | 0.0097 (5) | −0.0004 (4) |
C4 | 0.0256 (6) | 0.0303 (6) | 0.0321 (7) | 0.0013 (5) | 0.0160 (5) | 0.0009 (5) |
O6—C9 | 1.2191 (16) | C13—H13B | 1.02 (2) |
O5—C8 | 1.2151 (16) | C13—H13C | 0.98 (2) |
N2—C9 | 1.3838 (16) | C14—H14A | 0.98 (2) |
N2—C10 | 1.3636 (16) | C14—H14B | 0.97 (2) |
N2—C13 | 1.4631 (16) | C14—H14C | 0.97 (2) |
N4—H4 | 0.989 (15) | O4—H4A | 0.91 (2) |
N4—C12 | 1.3431 (16) | O4—C6 | 1.3541 (16) |
N4—C10 | 1.3608 (16) | O2—C7 | 1.2940 (15) |
N1—C9 | 1.3976 (16) | O1—C7 | 1.2530 (16) |
N1—C8 | 1.4144 (15) | O3—H3 | 0.94 (2) |
N1—C15 | 1.4700 (16) | O3—C2 | 1.3545 (15) |
N3—C11 | 1.3882 (15) | C1—C6 | 1.4189 (17) |
N3—C12 | 1.3282 (16) | C1—C2 | 1.4125 (17) |
N3—C14 | 1.4677 (15) | C1—C7 | 1.4821 (17) |
C11—C10 | 1.3641 (17) | C6—C5 | 1.3870 (18) |
C11—C8 | 1.4369 (17) | C2—C3 | 1.3900 (18) |
C12—H12 | 0.963 (16) | C5—H5 | 0.949 (18) |
C15—H15A | 0.97 (2) | C5—C4 | 1.3865 (19) |
C15—H15B | 1.00 (2) | C3—H3A | 0.970 (19) |
C15—H15C | 0.97 (2) | C3—C4 | 1.3862 (19) |
C13—H13A | 0.964 (19) | C4—H4B | 0.985 (18) |
C9—N2—C13 | 120.37 (10) | N2—C13—H13B | 110.8 (12) |
C10—N2—C9 | 118.77 (10) | N2—C13—H13C | 111.1 (12) |
C10—N2—C13 | 120.82 (10) | H13A—C13—H13B | 107.1 (16) |
C12—N4—H4 | 122.1 (13) | H13A—C13—H13C | 111.6 (16) |
C12—N4—C10 | 106.04 (10) | H13B—C13—H13C | 108.1 (17) |
C10—N4—H4 | 131.8 (13) | N3—C14—H14A | 110.6 (11) |
C9—N1—C8 | 127.35 (10) | N3—C14—H14B | 108.5 (12) |
C9—N1—C15 | 116.09 (10) | N3—C14—H14C | 109.2 (12) |
C8—N1—C15 | 116.47 (10) | H14A—C14—H14B | 107.8 (17) |
C11—N3—C14 | 127.02 (10) | H14A—C14—H14C | 111.6 (16) |
C12—N3—C11 | 107.59 (10) | H14B—C14—H14C | 109.1 (17) |
C12—N3—C14 | 125.38 (11) | C6—O4—H4A | 102.8 (13) |
O6—C9—N2 | 121.39 (12) | C2—O3—H3 | 106.0 (14) |
O6—C9—N1 | 121.55 (11) | C6—C1—C7 | 119.69 (11) |
N2—C9—N1 | 117.06 (10) | C2—C1—C6 | 118.11 (11) |
N3—C11—C8 | 131.80 (11) | C2—C1—C7 | 122.19 (11) |
C10—C11—N3 | 105.73 (10) | O4—C6—C1 | 121.15 (11) |
C10—C11—C8 | 122.38 (11) | O4—C6—C5 | 118.35 (11) |
N4—C12—H12 | 126.2 (9) | C5—C6—C1 | 120.49 (12) |
N3—C12—N4 | 110.91 (11) | O3—C2—C1 | 121.83 (11) |
N3—C12—H12 | 122.8 (9) | O3—C2—C3 | 117.11 (11) |
N2—C10—C11 | 123.53 (11) | C3—C2—C1 | 121.05 (12) |
N4—C10—N2 | 126.72 (11) | C6—C5—H5 | 118.8 (10) |
N4—C10—C11 | 109.72 (11) | C4—C5—C6 | 119.64 (12) |
O5—C8—N1 | 122.17 (11) | C4—C5—H5 | 121.6 (10) |
O5—C8—C11 | 126.98 (11) | C2—C3—H3A | 119.1 (11) |
N1—C8—C11 | 110.85 (10) | C4—C3—C2 | 119.10 (12) |
N1—C15—H15A | 109.6 (13) | C4—C3—H3A | 121.8 (11) |
N1—C15—H15B | 107.6 (12) | O2—C7—C1 | 117.50 (11) |
N1—C15—H15C | 111.9 (14) | O1—C7—O2 | 121.91 (11) |
H15A—C15—H15B | 111.0 (17) | O1—C7—C1 | 120.59 (11) |
H15A—C15—H15C | 108.1 (19) | C5—C4—H4B | 119.3 (10) |
H15B—C15—H15C | 108.7 (18) | C3—C4—C5 | 121.59 (12) |
N2—C13—H13A | 108.1 (11) | C3—C4—H4B | 119.1 (10) |
N3—C11—C10—N2 | 177.45 (11) | C13—N2—C9—O6 | −1.19 (19) |
N3—C11—C10—N4 | −0.66 (14) | C13—N2—C9—N1 | 178.67 (11) |
N3—C11—C8—O5 | 2.1 (2) | C13—N2—C10—N4 | 0.05 (19) |
N3—C11—C8—N1 | −177.84 (12) | C13—N2—C10—C11 | −177.73 (12) |
C9—N2—C10—N4 | 177.81 (11) | C14—N3—C11—C10 | −179.96 (12) |
C9—N2—C10—C11 | 0.03 (18) | C14—N3—C11—C8 | −3.4 (2) |
C9—N1—C8—O5 | −176.99 (12) | C14—N3—C12—N4 | −179.58 (11) |
C9—N1—C8—C11 | 2.91 (17) | O4—C6—C5—C4 | 179.76 (12) |
C11—N3—C12—N4 | 0.14 (14) | O3—C2—C3—C4 | −178.92 (12) |
C12—N4—C10—N2 | −177.29 (12) | C1—C6—C5—C4 | 0.36 (19) |
C12—N4—C10—C11 | 0.75 (14) | C1—C2—C3—C4 | 0.36 (19) |
C12—N3—C11—C10 | 0.32 (14) | C6—C1—C2—O3 | 179.98 (11) |
C12—N3—C11—C8 | 176.88 (13) | C6—C1—C2—C3 | 0.73 (18) |
C10—N2—C9—O6 | −178.96 (12) | C6—C1—C7—O2 | −176.21 (11) |
C10—N2—C9—N1 | 0.89 (17) | C6—C1—C7—O1 | 3.39 (18) |
C10—N4—C12—N3 | −0.55 (14) | C6—C5—C4—C3 | 0.8 (2) |
C10—C11—C8—O5 | 178.14 (12) | C2—C1—C6—O4 | 179.52 (11) |
C10—C11—C8—N1 | −1.76 (17) | C2—C1—C6—C5 | −1.10 (18) |
C8—N1—C9—O6 | 177.25 (12) | C2—C1—C7—O2 | 3.42 (18) |
C8—N1—C9—N2 | −2.60 (18) | C2—C1—C7—O1 | −176.98 (12) |
C8—C11—C10—N2 | 0.49 (19) | C2—C3—C4—C5 | −1.1 (2) |
C8—C11—C10—N4 | −177.62 (11) | C7—C1—C6—O4 | −0.84 (18) |
C15—N1—C9—O6 | 0.73 (18) | C7—C1—C6—C5 | 178.55 (11) |
C15—N1—C9—N2 | −179.12 (11) | C7—C1—C2—O3 | 0.35 (19) |
C15—N1—C8—O5 | −0.48 (18) | C7—C1—C2—C3 | −178.90 (12) |
C15—N1—C8—C11 | 179.42 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···O2 | 0.99 (2) | 1.56 (2) | 2.5441 (14) | 179 (2) |
O4—H4A···O1 | 0.91 (2) | 1.69 (2) | 2.5440 (13) | 156.1 (19) |
O3—H3···O2 | 0.94 (2) | 1.72 (2) | 2.5737 (13) | 149 (2) |
C7H9N4O2+·C7H5O4− | Dx = 1.551 Mg m−3 |
Mr = 334.29 | Melting point: 202 K |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 6.9579 (3) Å | Cell parameters from 5599 reflections |
b = 16.5845 (6) Å | θ = 2.7–75.3° |
c = 12.4718 (5) Å | µ = 1.06 mm−1 |
β = 95.691 (4)° | T = 132 K |
V = 1432.06 (10) Å3 | Plate, clear light colourless |
Z = 4 | 0.34 × 0.24 × 0.08 mm |
F(000) = 696 |
Rigaku OD SuperNova Single source diffractometer with an Atlas detector | 2970 independent reflections |
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source | 2782 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.023 |
Detector resolution: 10.5357 pixels mm-1 | θmax = 76.5°, θmin = 4.5° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2019) | k = −20→20 |
Tmin = 0.649, Tmax = 1.000 | l = −15→15 |
12055 measured reflections |
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | All H-atom parameters refined |
wR(F2) = 0.147 | w = 1/[σ2(Fo2) + (0.0629P)2 + 1.3861P] where P = (Fo2 + 2Fc2)/3 |
S = 1.11 | (Δ/σ)max < 0.001 |
2970 reflections | Δρmax = 0.51 e Å−3 |
273 parameters | Δρmin = −0.24 e Å−3 |
2 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O5 | 0.3845 (2) | 0.28563 (9) | 0.10648 (12) | 0.0343 (4) | |
O6 | 0.4508 (2) | 0.55891 (9) | 0.10181 (12) | 0.0315 (4) | |
O1 | 0.1578 (2) | 0.43520 (9) | 0.65282 (13) | 0.0352 (4) | |
O2 | 0.2341 (2) | 0.53812 (9) | 0.55146 (12) | 0.0327 (4) | |
O4 | 0.0791 (3) | 0.45956 (11) | 0.84553 (13) | 0.0393 (4) | |
O3 | 0.2082 (3) | 0.68358 (10) | 0.61672 (14) | 0.0394 (4) | |
N4 | 0.2886 (2) | 0.42798 (11) | 0.41420 (14) | 0.0255 (4) | |
N1 | 0.4179 (3) | 0.42264 (11) | 0.10880 (14) | 0.0265 (4) | |
N2 | 0.3665 (2) | 0.50484 (10) | 0.25777 (13) | 0.0260 (4) | |
N3 | 0.3021 (3) | 0.30658 (10) | 0.34625 (14) | 0.0289 (4) | |
C10 | 0.3345 (3) | 0.43505 (12) | 0.31106 (16) | 0.0246 (4) | |
C11 | 0.3441 (3) | 0.36048 (12) | 0.26700 (16) | 0.0260 (4) | |
C9 | 0.4144 (3) | 0.49925 (13) | 0.15252 (16) | 0.0258 (4) | |
C8 | 0.3822 (3) | 0.34889 (13) | 0.15611 (16) | 0.0261 (4) | |
C1 | 0.1489 (3) | 0.56751 (13) | 0.72638 (16) | 0.0264 (4) | |
C7 | 0.1804 (3) | 0.50870 (13) | 0.64013 (16) | 0.0267 (4) | |
C12 | 0.2705 (3) | 0.34930 (13) | 0.43346 (17) | 0.0289 (4) | |
C2 | 0.1672 (3) | 0.65122 (14) | 0.71212 (18) | 0.0310 (5) | |
C6 | 0.1026 (3) | 0.53936 (14) | 0.82804 (17) | 0.0301 (5) | |
C13 | 0.3495 (4) | 0.58438 (14) | 0.30785 (19) | 0.0336 (5) | |
C3 | 0.1432 (4) | 0.70363 (15) | 0.7959 (2) | 0.0400 (6) | |
C5 | 0.0812 (3) | 0.59200 (16) | 0.91215 (19) | 0.0368 (5) | |
C14 | 0.3021 (5) | 0.21876 (14) | 0.3388 (2) | 0.0448 (6) | |
C4 | 0.1032 (4) | 0.67333 (17) | 0.8954 (2) | 0.0425 (6) | |
H4B | 0.077 (3) | 0.7075 (14) | 0.9512 (19) | 0.022 (5)* | |
H1 | 0.454 (4) | 0.4211 (16) | 0.046 (2) | 0.034 (7)* | |
H3 | 0.224 (5) | 0.6347 (12) | 0.575 (2) | 0.057 (9)* | |
H3A | 0.151 (4) | 0.757 (2) | 0.777 (2) | 0.049 (8)* | |
H5 | 0.053 (4) | 0.5737 (17) | 0.980 (2) | 0.040 (7)* | |
H14A | 0.251 (5) | 0.2049 (19) | 0.262 (3) | 0.056 (9)* | |
H13A | 0.329 (4) | 0.623 (2) | 0.251 (3) | 0.054 (9)* | |
H13B | 0.232 (5) | 0.5860 (19) | 0.344 (3) | 0.057 (9)* | |
H14B | 0.225 (5) | 0.198 (2) | 0.398 (3) | 0.064 (10)* | |
H4A | 0.107 (5) | 0.434 (2) | 0.776 (3) | 0.074 (11)* | |
H13C | 0.457 (5) | 0.595 (2) | 0.356 (3) | 0.061 (10)* | |
H4 | 0.273 (5) | 0.473 (2) | 0.459 (3) | 0.081 (12)* | |
H14C | 0.429 (6) | 0.203 (2) | 0.347 (3) | 0.083 (13)* | |
H12 | 0.236 (4) | 0.3280 (16) | 0.5011 (13) | 0.042 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O5 | 0.0441 (9) | 0.0314 (8) | 0.0282 (8) | −0.0026 (7) | 0.0069 (6) | −0.0048 (6) |
O6 | 0.0389 (8) | 0.0325 (8) | 0.0241 (7) | −0.0070 (6) | 0.0073 (6) | 0.0025 (6) |
O1 | 0.0443 (9) | 0.0289 (8) | 0.0333 (8) | 0.0019 (6) | 0.0087 (7) | −0.0001 (6) |
O2 | 0.0429 (9) | 0.0325 (8) | 0.0238 (7) | −0.0004 (6) | 0.0095 (6) | −0.0014 (6) |
O4 | 0.0461 (9) | 0.0401 (9) | 0.0335 (9) | 0.0068 (7) | 0.0136 (7) | 0.0100 (7) |
O3 | 0.0526 (10) | 0.0293 (8) | 0.0379 (9) | −0.0032 (7) | 0.0133 (7) | 0.0044 (7) |
N4 | 0.0262 (8) | 0.0295 (9) | 0.0213 (8) | 0.0000 (7) | 0.0043 (6) | 0.0003 (7) |
N1 | 0.0284 (8) | 0.0324 (9) | 0.0192 (8) | −0.0043 (7) | 0.0053 (6) | −0.0010 (7) |
N2 | 0.0295 (8) | 0.0266 (9) | 0.0225 (8) | −0.0026 (7) | 0.0051 (6) | 0.0007 (6) |
N3 | 0.0384 (10) | 0.0250 (9) | 0.0234 (8) | 0.0010 (7) | 0.0034 (7) | 0.0003 (7) |
C10 | 0.0203 (9) | 0.0307 (10) | 0.0227 (9) | 0.0005 (7) | 0.0022 (7) | 0.0007 (7) |
C11 | 0.0259 (9) | 0.0296 (10) | 0.0225 (10) | −0.0007 (8) | 0.0028 (7) | 0.0050 (8) |
C9 | 0.0229 (9) | 0.0318 (10) | 0.0226 (9) | −0.0033 (7) | 0.0009 (7) | −0.0001 (8) |
C8 | 0.0254 (9) | 0.0298 (10) | 0.0229 (9) | −0.0017 (8) | 0.0018 (7) | −0.0020 (8) |
C1 | 0.0208 (9) | 0.0329 (11) | 0.0253 (10) | 0.0005 (7) | 0.0009 (7) | −0.0005 (8) |
C7 | 0.0228 (9) | 0.0325 (10) | 0.0249 (10) | 0.0014 (8) | 0.0026 (7) | −0.0037 (8) |
C12 | 0.0334 (11) | 0.0317 (10) | 0.0219 (10) | 0.0010 (8) | 0.0044 (8) | 0.0014 (8) |
C2 | 0.0279 (10) | 0.0338 (11) | 0.0316 (11) | −0.0023 (8) | 0.0037 (8) | −0.0011 (9) |
C6 | 0.0226 (9) | 0.0413 (12) | 0.0264 (10) | 0.0040 (8) | 0.0031 (7) | 0.0036 (9) |
C13 | 0.0415 (13) | 0.0282 (11) | 0.0324 (11) | 0.0005 (9) | 0.0110 (10) | −0.0020 (9) |
C3 | 0.0395 (13) | 0.0297 (12) | 0.0520 (15) | −0.0028 (9) | 0.0094 (11) | −0.0071 (10) |
C5 | 0.0283 (11) | 0.0547 (15) | 0.0274 (11) | 0.0026 (10) | 0.0030 (8) | 0.0006 (10) |
C14 | 0.077 (2) | 0.0237 (11) | 0.0345 (13) | 0.0023 (12) | 0.0092 (13) | −0.0007 (9) |
C4 | 0.0363 (12) | 0.0553 (15) | 0.0363 (12) | −0.0009 (11) | 0.0056 (10) | −0.0185 (12) |
O5—C8 | 1.219 (3) | C10—C11 | 1.358 (3) |
O6—C9 | 1.215 (3) | C11—C8 | 1.447 (3) |
O1—C7 | 1.241 (3) | C1—C7 | 1.484 (3) |
O2—C7 | 1.297 (3) | C1—C2 | 1.407 (3) |
O4—C6 | 1.354 (3) | C1—C6 | 1.418 (3) |
O4—H4A | 1.00 (4) | C12—H12 | 0.966 (10) |
O3—C2 | 1.361 (3) | C2—C3 | 1.382 (3) |
O3—H3 | 0.975 (10) | C6—C5 | 1.384 (3) |
N4—C10 | 1.361 (3) | C13—H13A | 0.95 (3) |
N4—C12 | 1.335 (3) | C13—H13B | 0.97 (3) |
N4—H4 | 0.94 (4) | C13—H13C | 0.93 (4) |
N1—C9 | 1.384 (3) | C3—C4 | 1.391 (4) |
N1—C8 | 1.391 (3) | C3—H3A | 0.92 (3) |
N1—H1 | 0.85 (3) | C5—C4 | 1.376 (4) |
N2—C10 | 1.364 (3) | C5—H5 | 0.94 (3) |
N2—C9 | 1.389 (3) | C14—H14A | 1.02 (3) |
N2—C13 | 1.469 (3) | C14—H14B | 1.01 (4) |
N3—C11 | 1.385 (3) | C14—H14C | 0.92 (4) |
N3—C12 | 1.334 (3) | C4—H4B | 0.93 (2) |
N3—C14 | 1.460 (3) | ||
C6—O4—H4A | 104 (2) | O2—C7—C1 | 116.52 (18) |
C2—O3—H3 | 101 (2) | N4—C12—H12 | 123.4 (17) |
C10—N4—H4 | 123 (2) | N3—C12—N4 | 110.26 (18) |
C12—N4—C10 | 106.82 (17) | N3—C12—H12 | 126.3 (17) |
C12—N4—H4 | 131 (2) | O3—C2—C1 | 121.9 (2) |
C9—N1—C8 | 128.99 (17) | O3—C2—C3 | 117.7 (2) |
C9—N1—H1 | 114.3 (18) | C3—C2—C1 | 120.4 (2) |
C8—N1—H1 | 116.6 (18) | O4—C6—C1 | 120.51 (19) |
C10—N2—C9 | 118.03 (17) | O4—C6—C5 | 118.1 (2) |
C10—N2—C13 | 122.05 (17) | C5—C6—C1 | 121.4 (2) |
C9—N2—C13 | 119.91 (17) | N2—C13—H13A | 106.9 (19) |
C11—N3—C14 | 126.65 (19) | N2—C13—H13B | 109.3 (19) |
C12—N3—C11 | 107.60 (17) | N2—C13—H13C | 111 (2) |
C12—N3—C14 | 125.67 (19) | H13A—C13—H13B | 105 (3) |
N4—C10—N2 | 126.78 (19) | H13A—C13—H13C | 114 (3) |
C11—C10—N4 | 109.25 (18) | H13B—C13—H13C | 111 (3) |
C11—C10—N2 | 123.97 (18) | C2—C3—C4 | 119.8 (2) |
N3—C11—C8 | 131.92 (19) | C2—C3—H3A | 113 (2) |
C10—C11—N3 | 106.06 (17) | C4—C3—H3A | 127 (2) |
C10—C11—C8 | 121.94 (18) | C6—C5—H5 | 121.8 (17) |
O6—C9—N1 | 122.00 (18) | C4—C5—C6 | 118.8 (2) |
O6—C9—N2 | 121.32 (19) | C4—C5—H5 | 119.4 (17) |
N1—C9—N2 | 116.69 (17) | N3—C14—H14A | 106.5 (18) |
O5—C8—N1 | 121.97 (19) | N3—C14—H14B | 107 (2) |
O5—C8—C11 | 127.8 (2) | N3—C14—H14C | 106 (3) |
N1—C8—C11 | 110.24 (17) | H14A—C14—H14B | 116 (3) |
C2—C1—C7 | 122.34 (19) | H14A—C14—H14C | 106 (3) |
C2—C1—C6 | 117.99 (19) | H14B—C14—H14C | 114 (3) |
C6—C1—C7 | 119.65 (19) | C3—C4—H4B | 121.2 (15) |
O1—C7—O2 | 121.94 (19) | C5—C4—C3 | 121.6 (2) |
O1—C7—C1 | 121.54 (19) | C5—C4—H4B | 116.9 (14) |
O4—C6—C5—C4 | −179.5 (2) | C7—C1—C6—O4 | −2.7 (3) |
O3—C2—C3—C4 | −179.3 (2) | C7—C1—C6—C5 | 176.86 (19) |
N4—C10—C11—N3 | 0.2 (2) | C12—N4—C10—N2 | −179.93 (19) |
N4—C10—C11—C8 | 177.29 (18) | C12—N4—C10—C11 | 0.1 (2) |
N2—C10—C11—N3 | −179.78 (18) | C12—N3—C11—C10 | −0.4 (2) |
N2—C10—C11—C8 | −2.6 (3) | C12—N3—C11—C8 | −177.1 (2) |
N3—C11—C8—O5 | 0.3 (4) | C2—C1—C7—O1 | −177.7 (2) |
N3—C11—C8—N1 | −179.8 (2) | C2—C1—C7—O2 | 2.8 (3) |
C10—N4—C12—N3 | −0.4 (2) | C2—C1—C6—O4 | 178.56 (19) |
C10—N2—C9—O6 | −177.57 (18) | C2—C1—C6—C5 | −1.9 (3) |
C10—N2—C9—N1 | 2.5 (3) | C2—C3—C4—C5 | −1.9 (4) |
C10—C11—C8—O5 | −176.0 (2) | C6—C1—C7—O1 | 3.6 (3) |
C10—C11—C8—N1 | 3.9 (3) | C6—C1—C7—O2 | −175.85 (18) |
C11—N3—C12—N4 | 0.5 (2) | C6—C1—C2—O3 | −178.87 (19) |
C9—N1—C8—O5 | 177.6 (2) | C6—C1—C2—C3 | 1.0 (3) |
C9—N1—C8—C11 | −2.2 (3) | C6—C5—C4—C3 | 1.0 (4) |
C9—N2—C10—N4 | 179.22 (18) | C13—N2—C10—N4 | −1.6 (3) |
C9—N2—C10—C11 | −0.9 (3) | C13—N2—C10—C11 | 178.3 (2) |
C8—N1—C9—O6 | 179.2 (2) | C13—N2—C9—O6 | 3.2 (3) |
C8—N1—C9—N2 | −0.9 (3) | C13—N2—C9—N1 | −176.72 (18) |
C1—C2—C3—C4 | 0.9 (4) | C14—N3—C11—C10 | −177.3 (2) |
C1—C6—C5—C4 | 0.9 (3) | C14—N3—C11—C8 | 5.9 (4) |
C7—C1—C2—O3 | 2.4 (3) | C14—N3—C12—N4 | 177.5 (2) |
C7—C1—C2—C3 | −177.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O6i | 0.85 (3) | 2.04 (3) | 2.881 (2) | 169 (3) |
O3—H3···O2 | 0.98 (1) | 1.63 (2) | 2.558 (2) | 157 (3) |
O4—H4A···O1 | 1.00 (4) | 1.62 (4) | 2.550 (2) | 153 (3) |
N4—H4···O2 | 0.94 (4) | 1.62 (4) | 2.557 (2) | 169 (4) |
Symmetry code: (i) −x+1, −y+1, −z. |
Alkaloid | pKa(protonated base) | ΔpKa (Cruz-Cabeza, 2012) = pKa(protonated base) - pKa(acid) |
TBR (theobromin) | 0.12 (Pereira et al., 2016) | -1.17 |
CAF (caffeine) | 0.6 (Pereira et al., 2016) | -0.69 |
Alkaloid·26DHBA | D—H···A | D—H | H···A | D···A | D—H···A |
Experimental I | O3—H3···O2 | 0.975 (10) | 1.632 (16) | 2.558 (2) | 157 (3) |
(TBR-H)+·(26DHBA)- | O4—H4A···O1 | 1.00 (4) | 1.62 (4) | 2.550 (2) | 153 (3) |
N1—H1···O6i | 0.85 (3) | 2.04 (3) | 2.881 (2) | 169 (3) | |
N4—H4···O2 | 0.94 (4) | 1.62 (4) | 2.557 (2) | 169 (4) | |
Calculated Ia | O3—H3···O2 | 0.972 | 1.727 | 2.579 | 144 |
TBR·26DHBA | O4—H4A···O1 | 0.984 | 1.670 | 2.559 | 148 |
O2—H4···N4 | 1.026 | 1.587 | 2.612 | 178 | |
Experimental II | O3—H3···O2 | 0.94 (2) | 1.72 (2) | 2.5737 (13) | 149 (2) |
(CAF-H)+·(26DHBA)- | O4—H4A···O1 | 0.91 (2) | 1.69 (2) | 2.5440 (13) | 156.1 (19) |
N4—H4···O2 | 0.989 (15) | 1.555 (15) | 2.5441 (14) | 179 (2) | |
Calculated IIa | O3—H3···O2 | 0.972 | 1.725 | 2.579 | 145 |
CAF·26DHBA | O4—H4A···O1 | 0.984 | 1.668 | 2.558 | 148 |
O2—H4···N4 | 1.028 | 1.579 | 2.607 | 178 |
Symmetry code: (i) -x+1, -y+1, -z. |
Alkaloid–26DHBA complex | Alkaloid solubility in water (mmol ml-1) | Absorption solubility (mmol ml-1)a |
(TBR-H)+·(26DHBA)- | 0.00183 ?(Sanphui & Nangia, 2014) | 0.00431 (× 2.36) (this work) |
(TBR-H)+·(26DHBA)-·H2O | 0.09452 (× 51.65) (Gołdyn et al., 2019) | |
(TPH-H)+·(26DHBA)-·H2O | 0.0457 (Sarma & Saikia, 2014) | 0.0526 (× 1.15) (Sarma & Saikia, 2014) |
(CAF-H)+·(26DHBA)- | 0.108 (Lilley et al., 1992) | 0.009 (× 0.083) (this work) |
Note: (a) the change in water solubility in relation to the alkaloid solubility is shown in brackets. |
Acknowledgements
MG and MP acknowledge financial support from the European Union through the European Social Fund under the Operational Program Knowledge Education Development. MG and EBA thank Professor Artur Stefankiewicz for support. The computations were performed at the Poznań Supercomputing and Networking Center and supported in part by PL-Grid Infrastructure. AL acknowledges support from the Ministry of Science and Higher Education.
Funding information
Funding for this research was provided by: European Social Fund (grant No. POWR.03.02.00-00-I026/16).
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