electron diffraction
Structure and Cordyceps javanica, determined by 3D electron diffraction
of natural fungal product beauveriolide I, isolated fromaDepartment of Structure Analysis, Institute of Physics of the Czech Academy of Sciences, Na Slovance 1999/2, Prague 8, 18221, Czech Republic, and bBiology Centre, Czech Academy of Sciences, Branišovská 1160/31, České Budějovice 2, 370 05, Czech Republic
*Correspondence e-mail: palat@fzu.cz
Beauveriolides, including the main beauveriolide I {systematic name: (3R,6S,9S,13S)-9-benzyl-13-[(2S)-hexan-2-yl]-6-methyl-3-(2-methylpropyl)-1-oxa-4,7,10-triazacyclotridecane-2,5,8,11-tetrone, C27H41N3O5}, are a series of cyclodepsipeptides that have shown promising results in the treatment of Alzheimer's disease and in the prevention of foam cell formation in atherosclerosis. Their studies have been difficult due to their tiny crystal size and fibre-like morphology, until now. Recent developments in 3D electron diffraction methodology have made it possible to accurately study the crystal structures of submicron crystals by overcoming the problems of beam sensitivity and dynamical scattering. In this study, the of beauveriolide I was determined by 3D electron diffraction. The cyclodepsipeptide crystallizes in the I2 with lattice parameters a = 40.2744 (4), b = 5.0976 (5), c = 27.698 (4) Å and β = 105.729 (6)°. After dynamical its was determined by comparing the R factors and calculating the z-scores of the two possible enantiomorphs of beauveriolide I.
Keywords: crystal structure; natural product; 3D electron diffraction; absolute structure; Alzheimer's disease.
CCDC reference: 2332378
1. Introduction
Beauveriolides represent a series of cyclodepsipeptides containing three amino acids and the unusual (3S,4S)-hydroxy-4-methylhydroxy acid. They were first described as beauveriolide metabolites of the entomopathogenic fungus Beauveria bassiana (Elsworth & Grove, 1977). Similar metabolites were further described in several other fungi of the genera Beauveria, Isaria or Paecilomyces (Kadlec et al., 1994). The of the (3S,4S)-hydroxy acid component of beauveriolide I and II isolated from various Beauveria species was first estimated by synthesizing all possible chiral variants and comparing their 1H and 13C NMR spectra and data (Mochizuki et al., 1993). Recently, the beauveriolides (beauverolides) have attracted attention as potential drugs for the treatment of Alzheimer's disease and for preventing foam cell formation in atherosclerosis (Nagai et al., 2008; Heneberg et al., 2020). In particular, beauveriolide I (Fig. 1) has previously shown potent activity in inhibiting the formation of lipid droplets in mouse macrophages by specifically inhibiting the activity of acyl-coenzyme A (CoA):cholesterol acyltransferase (ACAT) (Namatame et al., 2004; Tomoda & Doi, 2008). Inhibition of ACAT also reduces the secretion of amyloid-β peptide (Huttunen et al., 2007; Puglielli et al., 2001), the accumulation of which in brain loci is known to progress Alzheimer's disease (Hardy & Selkoe, 2002).
Beauveriolides form very small fibre-like crystals. Therefore, the determination of their single-crystal structure has never been successful, which, together with the difficulty of correctly identifying 3-hydroxy-4-methylhydroxy acid and its
led to probably identical metabolites from several fungi being described under different names. This ambiguity still exists today. The structure and conformation of beauveriolides remain important for understanding their physical properties, their role in the self–nonself recognition as fungal metabolites by the insect immune system, and for investigating their potential role in the treatment of human diseases.In the last decade, thanks to the tremendous progress in data acquisition and processing, 3D electron diffraction (ED) has become an effective tool in crystallography for determining the structure of crystals of various compounds, including inorganics, organics, metal–organic frameworks (MOFS) and biological samples. The great advantage of 3D ED is that in a transmission electron microscope (TEM), very small crystals with a volume in the range of 100 to 10−5 µm3 can be easily located, and the beam can be focused to perform ED measurements (Gemmi et al., 2019). Continuous rotation electron diffraction (cRED) has become the most common data-acquisition technique in 3D ED, where a sample is continuously rotated over a range, while the diffraction data is collected at a certain tilt-step. Thus, cRED enables fast data collection, minimizing the electron dose on the sample, and making it very useful for beam-sensitive samples, including organic samples. The electrons used in 3D ED interact much more strongly than the more commonly used X-ray, resulting in multiple scattering of the beam, called dynamic scattering, and described by the of diffraction. The causes nonlinear deviations in the diffracted intensities from the kinematic limit. A technique called dynamical (Palatinus et al., 2015) takes these effects into account in the calculation of model intensities during structure giving more accurate and reliable results than those obtained without the application of the dynamical diffraction theory. In addition, the dynamical effects are sensitive to the of noncentrosymmetric crystals (Spence et al., 1994), enabling accurate and structure configuration of the crystals (Klar et al., 2023; Brázda et al., 2019).
In this study, we collected the 3D ED patterns of beauveriolide I using cRED experiments to solve its
Despite the difficulties with the data quality resulting from the beam sensitivity of the crystal, we obtained satisfactory dynamical including the determination of thus confirming the of the chiral centres of beauveriolide I.2. Experimental
2.1. Isolation of beauveriolide I
The surface stationary cultivation of Cordyceps javanica CCM8917 was carried out on a medium containing glucose (40 g), sorbitol (20 g), mannitol (10 g), soya peptone (30 g), KH2PO4 (1 g), MgSO4·7H2O (0.1 g), ZnSO4·7H2O (0.01 g) and water (1 l), for 18 d at 297 K. The isolated mycelium was washed with water and extracted several times with methanol (2 l). The extract was evaporated to dryness on a vacuum evaporator. HPLC–MS analysis revealed that the major isolated cyclodepsipeptide had characteristics of previously described beauveriolide I (Mochizuki et al., 1993); the other beauveriolides were M, F, L and Q in an approximate ratio of 40:20:20:20 (% with respect to beauveriolide I as 100%). The crude mixture was purified first by on silica gel with a stepwise gradient of dichloromethane/methanol. The final purification was carried out by preparative HPLC using a 354 mm × 18 mm internal diameter column, with Luna C8, 10 µm, and isocratic elution with methanol (85%) and water (15%). The crystalline material was obtained by the stepwise addition of water to the methanolic solution of beauveriolide I. Finally, the crystals were isolated by filtration and dried in air.
2.2. 3D electron diffraction (ED) experiment
The white powdery beauveriolide I sample was gently ground in an agate mortar. A TEM copper grid with holey carbon film was gently slid on the sample to stick some of the crystals onto the grid, and the excess was gently tapped off. The grid was loaded onto a cryo-holder and was inserted into an FEI Tecnai G2 20 TEM. The holder was then cooled to a temperature of 100 K before performing any measurements. The microscope was operated at 200 kV with a LaB6 cathode, equipped with a Medipix 3 hybrid pixel detector ASI Cheetah (512 × 512 pixels, 24-bit dynamic range). The tilt step per frame was 0.3°, with the exposure time ranging from 504 to 1014 ms per frame. The crystals were found to be too sensitive to the electron beam to permit the collection of a full data set on a single crystal. Therefore, data sets from four different crystals, labelled a–d, were merged to obtain a complete data set for the structure solution.
2.3. Data reduction and refinement
Indexation, lattice parameter determination and peak integration were performed using PETS2 (Palatinus et al., 2019). The processed data were imported into JANA2020 (Petříček et al., 2023) and the was solved using SHELXT (Sheldrick, 2015). All non-H atoms were found in the solution. For the only crystals b and c, shown in Fig. 2, were used since the data from the other two crystals were very weak and yielded poor R factors.
Detailed 3D ED set-up, crystal information and .
details are given in Table 1
|
3. Results and discussion
3.1. Structure solution and refinement
The a = 40.2744 (4), b = 5.0976 (5), c = 27.698 (4) Å and β = 105.729 (6)°. The reflection condition h + k + l = 2n in the 2D reconstruction of reciprocal sections (Fig. S1 in the supporting information) indicates an I2 which was further confirmed by the successful structure solution and There are two independent molecules in the The standard setting C2 was not used, because it leads to a very high monoclinic angle of 140.87°. Fig. S2 in the supporting information shows the structure of beauveriolide I down the c axis.
of beauveriolide I was determined to be a body-centred monoclinic lattice with lattice parameters ofIt can be observed clearly in Fig. 3(a) that one of the two molecules in an has a distorted benzene ring with very large atomic displacement parameters (ADPs) for four C atoms (labelled C40, C41, C43 and C44 in Fig. 3). The electrostatic potential map after an initial dynamical [Fig. 3(b)] shows the broadening of the potential around the C atoms. Therefore, to better model this benzene ring, the four C atoms along with their H atoms were split equally into two different positions [Fig. 3(c)]. The relative occupancy of the two positions was refined freely. Subsequent refinements led to significantly improved ADPs of these C atoms, as well as improved R factors.
The H atoms for all the C atoms were added to geometrically determined positions. These H atoms were refined with Uiso(H) = 1.2Uiso(C). The C—H distances were fixed to 1.06 Å, i.e. to the internuclear distances, as electron diffraction does not suffer from the biased H-atom positions in the same way as X-ray diffraction data. To determine the arrangement of the H atoms bonded to the N atoms, initial dynamical of the was performed without the H atoms, and the difference electrostatic potential (DESP) map was calculated to attempt the localization of the H-atom positions (Fig. 4). The H-atom positions shown in Fig. 4 are in their expected positions that form trigonal planar geometry with the N atoms and the two adjacent C atoms. Of the six N atoms in the the H atoms of four of them (N1, N2, N4 and N5) are clearly visible, with a density maximum between the N atoms and their adjacent O atoms. The lack of visibility of the H atoms in the other two N atoms is likely due to the data quality, which in turn, is likely due to the electron-beam sensitivity of the samples. For the final each of the six H atoms on the amine N atoms was added and fixed in the geometrically expected positions, with N—H distances of 1.01 Å and Uiso(H) = 1.2Uiso(N).
The final refined structure of beauveriolide I [Fig. 5(a)] shows the stacking of the same asymmetric units along the b axis. As can be seen in Figs. 5(b) and 5(c), the stacking is stabilized by three hydrogen bonds between two molecules. Regarding the distorted benzene ring, the split model considerably decreases the ADPs of the atoms. The split was found to be almost even, with an occupancy ratio of 0.47:0.53.
3.2. Determination of and absolute structure
Beauveriolide I is a chiral molecule and has two different enantiomers (Fig. 6), which can thus form two enantiomorphs in crystalline form. Structure models of both enantiomorphs were refined against the same data set using the same set of parameters and restraints. The correct and configuration can be determined easily by comparing the R factors (Table 2). The difference in the R factors is significant enough to point to `Configuration A' as the correct enantiomer. To quantify the reliability of the determination, we used the z-score method proposed by Klar et al. (2023). The z-score method provides the confidence level that the hypothesis that the selected configuration is correct. The z-score of 23.0σ for `Configuration A' (Table 2) corresponds to a probability of correct estimation indistinguishably close to 100%.
4. Conclusion
The ab initio using diffraction data collected from four crystals using continuous-rotation 3D ED. The compound crystallized in the I2, with lattice parameters of a = 40.2744 (4), b = 5.0976 (5), c = 27.698 (4) Å and β = 105.729 (6)°. After the dynamical of the solved structure without the H atoms in the amine groups, four out of six H atoms were located in the DESP maps, which were found to be in trigonal planar geometry, and the same case was assumed for the other two. The amine H atoms were found to form hydrogen bonds with the O atoms of adjacent molecules along the b axis. The was determined using the z-score method at the confidence level of 23.0σ. This study, apart from providing the structure of the studied compound, further highlights the utility of the 3D ED technique for studying structures of complex beam-sensitive organic compounds, including natural products. The robustness of the determination is an important feature of the method, which is of foremost importance in the analysis of natural products, where the is often unknown and difficult to determine.
of beauveriolide I was solvedSupporting information
CCDC reference: 2332378
https://doi.org/10.1107/S2053229624001359/nh3001sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2053229624001359/nh3001Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2053229624001359/nh3001Isup3.cml
Additional figures. DOI: https://doi.org/10.1107/S2053229624001359/nh3001sup4.pdf
C27H41N3O5 | F(000) = 2112 |
Mr = 487.6 | cell parameters determined from the combined data of four crystals |
Monoclinic, I2 | Dx = 1.184 Mg m−3 |
Hall symbol: I 2y | Electrons 200 KeV radiation, λ = 0.0251 Å |
a = 40.2744 (4) Å | Cell parameters from 13569 reflections |
b = 5.0976 (5) Å | θ = 0.1–0.8° |
c = 27.698 (4) Å | µ = 0 mm−1 |
β = 105.729 (6)° | T = 100 K |
V = 5473.6 (9) Å3 | Long, flat rods, white |
Z = 8 | 0.01 × 0.0004 × 0.0001 mm |
TEM FEI Tecnai G2 20 diffractometer | 4154 reflections with I > 3σ(I) |
Radiation source: Lab6 cathode | θmax = 0.8°, θmin = 0.1° |
continuous rotation 3D ED scans | h = −27→27 |
15190 measured reflections | k = −4→4 |
6694 independent reflections | l = −24→24 |
Refinement on F | 370 constraints |
R[F2 > 2σ(F2)] = 0.110 | H-atom parameters constrained |
wR(F2) = 0.120 | Weighting scheme based on measured s.u.'s w = 1/(σ2(F) + 0.0001F2) |
S = 1.91 | (Δ/σ)max = 0.052 |
6694 reflections | Δρmax = 0.16 e Å−3 |
364 parameters | Δρmin = −0.17 e Å−3 |
6 restraints | Absolute structure: 3563 of Friedel pairs used in the refinement |
Refinement. Structure refined by dynamical refinement. Hence, no R_int available. Dynamical refinement settings: gmax = 1.30 RSg = 0.70 DSg = 0.00 Nsteps = 150 Absolute structure determined by the z-score method (see Klar et al., Nat. Chem. (2023), doi.org/10.1038/s41557-023-01186-1). The absolute structure is correct with the z-score level of 20.161. Calculated intensities based on dynamical theory of electron diffraction. Number of individual data sets in refinement: 2 Block 1 refers to crystal #2 and block 2 refers to crystal #4 in the article. Block Thickness Nobs Nall Robs Rall wRall 1 1577.511 4154 6694 0.1098 0.1423 0.1199 2 1091.936 1733 7865 0.1351 0.2235 0.1555 Thickness given in Angstrom. Refinement statistics relevant for the non-linear least-squares minimisation of wR(all): Number of reflections in refinement (obs/all): 5887 / 14559 Number of reflections present more than once: Number of reflections unique in point group 1: Robs: 0.1173 Rall: 0.1745 wRall: 0.1282 Post-refinement analysis of symmetrically-equivalent reflections: Number of unique reflections (obs/all): 3290 / 6246 MRobs: 0.1060 MRall: 0.1460 MwRall: 0.1104 |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.7101 (8) | −0.148 (6) | 0.6294 (9) | 0.366 (19)* | |
C2 | 0.7024 (4) | −0.117 (4) | 0.5728 (8) | 0.175 (9)* | |
C3 | 0.6990 (2) | −0.347 (2) | 0.5370 (6) | 0.046 (3)* | |
C4 | 0.6924 (2) | −0.264 (2) | 0.4804 (6) | 0.026 (2)* | |
C5 | 0.69465 (18) | −0.5085 (18) | 0.4446 (4) | 0.0098 (19)* | |
C6 | 0.73089 (16) | −0.5961 (18) | 0.4516 (4) | 0.0094 (19)* | |
C7 | 0.67521 (17) | −0.4504 (18) | 0.3900 (4) | 0.0028 (17)* | |
C8 | 0.69023 (16) | −0.2136 (17) | 0.3677 (4) | 0.0034 (18)* | |
C9 | 0.67215 (18) | −0.1430 (17) | 0.3131 (4) | 0.0037 (7)* | |
C10 | 0.63663 (17) | −0.2819 (17) | 0.2324 (4) | 0.0041 (17)* | |
C11 | 0.64427 (17) | −0.4551 (17) | 0.1913 (4) | 0.0053 (17)* | |
C12 | 0.67936 (19) | −0.3984 (18) | 0.1832 (4) | 0.0059 (18)* | |
C13 | 0.70758 (19) | −0.5479 (19) | 0.2070 (4) | 0.015 (2)* | |
C14 | 0.7399 (2) | −0.4927 (18) | 0.2017 (5) | 0.020 (2)* | |
C15 | 0.7450 (2) | −0.2846 (18) | 0.1678 (5) | 0.020 (2)* | |
C16 | 0.7153 (2) | −0.149 (2) | 0.1440 (5) | 0.032 (3)* | |
C17 | 0.6832 (2) | −0.1969 (18) | 0.1500 (5) | 0.013 (2)* | |
C18 | 0.60048 (18) | −0.311492 | 0.2364 (4) | 0.0037 (7)* | |
C19 | 0.54926 (18) | −0.1095 (18) | 0.2490 (4) | 0.0090 (19)* | |
C20 | 0.52102 (18) | −0.1650 (19) | 0.2008 (4) | 0.017 (2)* | |
C21 | 0.54894 (18) | −0.3021 (18) | 0.2903 (4) | 0.0037 (7)* | |
C22 | 0.5811 (2) | −0.4557 (19) | 0.3758 (5) | 0.013 (2)* | |
C23 | 0.5785 (2) | −0.3392 (18) | 0.4267 (5) | 0.019 (2)* | |
C24 | 0.5436 (2) | −0.224 (2) | 0.4265 (5) | 0.030 (3)* | |
C25 | 0.5147 (2) | −0.432 (2) | 0.4120 (5) | 0.050 (3)* | |
C26 | 0.5471 (3) | −0.103 (3) | 0.4787 (7) | 0.072 (4)* | |
C27 | 0.61651 (17) | −0.5702 (18) | 0.3823 (4) | 0.0036 (18)* | |
C28 | 0.3873 (3) | −0.530 (3) | 0.4218 (6) | 0.071 (4)* | |
C29 | 0.4021 (3) | −0.478 (3) | 0.3777 (5) | 0.058 (4)* | |
C30 | 0.4114 (2) | −0.707 (2) | 0.3528 (6) | 0.028 (3)* | |
C31 | 0.42025 (18) | −0.6471 (18) | 0.3016 (5) | 0.012 (2)* | |
C32 | 0.43055 (18) | −0.8917 (18) | 0.2752 (4) | 0.0056 (18)* | |
C33 | 0.46719 (19) | −0.9700 (19) | 0.3049 (4) | 0.027 (2)* | |
C34 | 0.42586 (18) | −0.8470 (17) | 0.2197 (4) | 0.0045 (18)* | |
C35 | 0.44713 (18) | −0.6100 (19) | 0.2075 (5) | 0.011 (2)* | |
C36 | 0.43994 (18) | −0.5505 (18) | 0.1546 (4) | 0.0037 (7)* | |
C37 | 0.42691 (19) | −0.7079 (18) | 0.0662 (4) | 0.0081 (19)* | |
C38 | 0.4451 (2) | −0.914 (2) | 0.0417 (6) | 0.025 (2)* | |
C39 | 0.4418 (2) | −0.849 (2) | −0.0124 (5) | 0.029 (3)* | |
C40 | 0.4469 (4) | −0.583 (5) | −0.0247 (14) | 0.059 (6)* | 0.468 (5) |
C40' | 0.4707 (5) | −0.675 (4) | −0.0228 (12) | 0.059 (6)* | 0.532 (5) |
C41 | 0.4441 (4) | −0.533 (6) | −0.0790 (12) | 0.061 (6)* | 0.468 (5) |
C41' | 0.4645 (6) | −0.635 (4) | −0.0745 (11) | 0.061 (6)* | 0.532 (5) |
C42 | 0.4371 (3) | −0.730 (2) | −0.1135 (7) | 0.065 (4)* | |
C43 | 0.4322 (4) | −0.986 (5) | −0.1015 (13) | 0.051 (5)* | 0.468 (5) |
C43' | 0.4142 (5) | −0.876 (4) | −0.0990 (12) | 0.051 (5)* | 0.532 (5) |
C44 | 0.4343 (4) | −1.057 (6) | −0.0504 (12) | 0.059 (6)* | 0.468 (5) |
C44' | 0.4169 (5) | −0.938 (4) | −0.0452 (12) | 0.059 (6)* | 0.532 (5) |
C45 | 0.38801 (18) | −0.7443 (17) | 0.0486 (4) | 0.0037 (7)* | |
C46 | 0.33201 (19) | −0.5376 (18) | 0.0280 (4) | 0.018 (2)* | |
C47 | 0.3145 (2) | −0.600 (2) | −0.0208 (5) | 0.033 (3)* | |
C48 | 0.31997 (19) | −0.7207 (18) | 0.0658 (4) | 0.0037 (7)* | |
C49 | 0.3326 (2) | −0.853 (2) | 0.1535 (6) | 0.036 (3)* | |
C50 | 0.3179 (2) | −0.697 (3) | 0.1929 (7) | 0.050 (3)* | |
C51 | 0.3145 (3) | −0.867 (3) | 0.2433 (8) | 0.088 (5)* | |
C52 | 0.2855 (4) | −1.067 (3) | 0.2308 (8) | 0.160 (7)* | |
C53 | 0.3131 (5) | −0.705 (4) | 0.2888 (8) | 0.190 (9)* | |
C54 | 0.3681 (2) | −0.9732 (19) | 0.1791 (5) | 0.014 (2)* | |
H1c1 | 0.730129 | −0.01687 | 0.647237 | 0.4398* | |
H2c1 | 0.68766 | −0.105446 | 0.640828 | 0.4398* | |
H3c1 | 0.718053 | −0.343366 | 0.639439 | 0.4398* | |
H1c2 | 0.68101 | 0.010901 | 0.559902 | 0.2101* | |
H2c2 | 0.71921 | 0.02525 | 0.56437 | 0.2101* | |
H1c3 | 0.721527 | −0.464535 | 0.54779 | 0.0547* | |
H2c3 | 0.678775 | −0.471835 | 0.540805 | 0.0547* | |
H1c4 | 0.667779 | −0.174977 | 0.467856 | 0.0317* | |
H2c4 | 0.710575 | −0.119336 | 0.477368 | 0.0317* | |
H1c5 | 0.681892 | −0.671109 | 0.455357 | 0.0118* | |
H1c6 | 0.743617 | −0.464335 | 0.432921 | 0.0113* | |
H2c6 | 0.743865 | −0.599392 | 0.490356 | 0.0113* | |
H3c6 | 0.73101 | −0.786849 | 0.436385 | 0.0113* | |
H1c7 | 0.67749 | −0.624257 | 0.37013 | 0.0033* | |
H1c8 | 0.716839 | −0.245442 | 0.37156 | 0.0041* | |
H2c8 | 0.690893 | −0.046721 | 0.390742 | 0.0041* | |
H1c10 | 0.640892 | −0.089434 | 0.220911 | 0.0049* | |
H1c11 | 0.642929 | −0.655418 | 0.200869 | 0.0063* | |
H2c11 | 0.62486 | −0.426362 | 0.1572 | 0.0063* | |
H1c13 | 0.704375 | −0.707809 | 0.229805 | 0.0184* | |
H1c14 | 0.761418 | −0.602393 | 0.222347 | 0.0244* | |
H1c15 | 0.769368 | −0.241634 | 0.162044 | 0.0235* | |
H1c16 | 0.717608 | 0.003823 | 0.119137 | 0.0379* | |
H1c17 | 0.661588 | −0.084829 | 0.130261 | 0.0155* | |
H1c19 | 0.543632 | 0.077649 | 0.261476 | 0.0108* | |
H1c20 | 0.525479 | −0.350322 | 0.186319 | 0.0206* | |
H2c20 | 0.496672 | −0.166121 | 0.208591 | 0.0206* | |
H3c20 | 0.521319 | −0.017273 | 0.173975 | 0.0206* | |
H1c22 | 0.562507 | −0.607124 | 0.364904 | 0.0161* | |
H1c23 | 0.597932 | −0.195271 | 0.439107 | 0.0227* | |
H2c23 | 0.585506 | −0.48456 | 0.454993 | 0.0227* | |
H1c24 | 0.536399 | −0.075451 | 0.398799 | 0.0364* | |
H1c25 | 0.505487 | −0.44339 | 0.372349 | 0.06* | |
H2c25 | 0.524527 | −0.617118 | 0.42647 | 0.06* | |
H3c25 | 0.494137 | −0.377968 | 0.427104 | 0.06* | |
H1c26 | 0.555851 | −0.248189 | 0.506668 | 0.0863* | |
H2c26 | 0.564996 | 0.053893 | 0.484761 | 0.0863* | |
H3c26 | 0.522721 | −0.031803 | 0.480588 | 0.0863* | |
H1c28 | 0.360261 | −0.501932 | 0.410543 | 0.0853* | |
H2c28 | 0.392889 | −0.726102 | 0.434266 | 0.0853* | |
H3c28 | 0.398628 | −0.399261 | 0.451452 | 0.0853* | |
H1c29 | 0.423638 | −0.351111 | 0.389107 | 0.0698* | |
H2c29 | 0.384648 | −0.359233 | 0.350953 | 0.0698* | |
H1c30 | 0.432541 | −0.803767 | 0.377521 | 0.0332* | |
H2c30 | 0.391312 | −0.847141 | 0.346598 | 0.0332* | |
H1c31 | 0.440226 | −0.505356 | 0.307747 | 0.0143* | |
H2c31 | 0.399046 | −0.551279 | 0.276765 | 0.0143* | |
H1c32 | 0.41382 | −1.051784 | 0.275588 | 0.0067* | |
H1c33 | 0.484224 | −0.810789 | 0.30552 | 0.0329* | |
H2c33 | 0.467312 | −1.0191 | 0.34216 | 0.0329* | |
H3c33 | 0.475339 | −1.134232 | 0.287615 | 0.0329* | |
H1c34 | 0.434168 | −1.022581 | 0.206124 | 0.0054* | |
H1c35 | 0.442526 | −0.441183 | 0.227113 | 0.0133* | |
H2c35 | 0.47385 | −0.647672 | 0.222356 | 0.0133* | |
H1c37 | 0.434027 | −0.518272 | 0.05682 | 0.0097* | |
H1c38 | 0.434211 | −1.101383 | 0.044084 | 0.0305* | |
H2c38 | 0.47157 | −0.923496 | 0.061623 | 0.0305* | |
H1c40 | 0.452377 | −0.431434 | 0.002602 | 0.0714* | 0.468 (5) |
H1c40' | 0.491966 | −0.598687 | 0.005013 | 0.0714* | 0.532 (5) |
H1c41 | 0.447663 | −0.339874 | −0.090777 | 0.0733* | 0.468 (5) |
H1c41' | 0.482911 | −0.517953 | −0.085587 | 0.0733* | 0.532 (5) |
H1c42 | 0.435445 | −0.683056 | −0.151396 | 0.0775* | |
H1c43 | 0.426788 | −1.131803 | −0.129882 | 0.0615* | 0.468 (5) |
H1c43' | 0.392977 | −0.952002 | −0.126906 | 0.0615* | 0.532 (5) |
H1c44 | 0.430549 | −1.253395 | −0.040631 | 0.071* | 0.468 (5) |
H1c44' | 0.397999 | −1.056088 | −0.035457 | 0.071* | 0.532 (5) |
H1c46 | 0.325045 | −0.337101 | 0.028004 | 0.0215* | |
H1c47 | 0.312572 | −0.430703 | −0.043679 | 0.0401* | |
H2c47 | 0.328097 | −0.748581 | −0.03427 | 0.0401* | |
H3c47 | 0.28945 | −0.66795 | −0.021943 | 0.0401* | |
H1c49 | 0.316285 | −1.011557 | 0.137672 | 0.0436* | |
H1c50 | 0.293608 | −0.614476 | 0.174459 | 0.0603* | |
H2c50 | 0.33303 | −0.526633 | 0.204827 | 0.0603* | |
H1c51 | 0.338449 | −0.966987 | 0.254183 | 0.1061* | |
H1c52 | 0.279216 | −1.111876 | 0.192037 | 0.1917* | |
H2c52 | 0.293457 | −1.23957 | 0.252019 | 0.1917* | |
H3c52 | 0.263498 | −0.987793 | 0.239694 | 0.1917* | |
H1c53 | 0.291342 | −0.579061 | 0.2791 | 0.2282* | |
H2c53 | 0.310947 | −0.832473 | 0.318091 | 0.2282* | |
H3c53 | 0.335857 | −0.591793 | 0.300928 | 0.2282* | |
H1n1 | 0.664554 | −0.521306 | 0.29269 | 0.0112* | |
H1n2 | 0.593891 | 0.081297 | 0.236734 | 0.0077* | |
H1n3 | 0.585367 | −0.086925 | 0.341875 | 0.0166* | |
H1n4 | 0.440643 | −0.944115 | 0.132849 | 0.0181* | |
H1n5 | 0.380141 | −0.356243 | 0.052138 | 0.0077* | |
H1n6 | 0.347286 | −0.49891 | 0.126524 | 0.0265* | |
N1 | 0.65894 (17) | −0.3336 (17) | 0.2819 (4) | 0.0093 (17)* | |
N2 | 0.58336 (17) | −0.0953 (18) | 0.2401 (4) | 0.0064 (11)* | |
N3 | 0.57291 (18) | −0.2609 (18) | 0.3359 (4) | 0.0138 (18)* | |
N4 | 0.43647 (18) | −0.7580 (18) | 0.1201 (4) | 0.0151 (18)* | |
N5 | 0.36839 (16) | −0.5320 (16) | 0.0439 (4) | 0.0064 (11)* | |
N6 | 0.33473 (19) | −0.6701 (19) | 0.1163 (5) | 0.022 (2)* | |
O1 | 0.66891 (17) | 0.0942 (17) | 0.3029 (4) | 0.0139 (17)* | |
O2 | 0.58823 (15) | −0.5401 (17) | 0.2383 (4) | 0.0048 (15)* | |
O3 | 0.52579 (16) | −0.4763 (16) | 0.2876 (4) | 0.0079 (15)* | |
O4 | 0.62285 (17) | −0.8021 (17) | 0.3845 (4) | 0.0119 (16)* | |
O5 | 0.63964 (16) | −0.3806 (17) | 0.3860 (4) | 0.0084 (16)* | |
O6 | 0.43864 (18) | −0.3203 (17) | 0.1390 (4) | 0.0130 (16)* | |
O7 | 0.37405 (19) | −0.9673 (18) | 0.0434 (4) | 0.0221 (19)* | |
O8 | 0.2984 (2) | −0.8851 (19) | 0.0501 (5) | 0.026 (2)* | |
O9 | 0.37337 (18) | −1.1960 (18) | 0.1827 (4) | 0.0189 (18)* | |
O10 | 0.39091 (16) | −0.7797 (17) | 0.1974 (4) | 0.0101 (16)* |
C1—C2 | 1.52 (3) | C31—H1c31 | 1.06 |
C1—H1c1 | 1.06 | C31—H2c31 | 1.06 |
C1—H2c1 | 1.06 | C32—C33 | 1.535 (10) |
C1—H3c1 | 1.06 | C32—C34 | 1.513 (16) |
C2—C3 | 1.52 (3) | C32—H1c32 | 1.06 |
C2—H1c2 | 1.06 | C33—H1c33 | 1.06 |
C2—H2c2 | 1.06 | C33—H2c33 | 1.06 |
C3—C4 | 1.57 (2) | C33—H3c33 | 1.06 |
C3—H1c3 | 1.06 | C34—C35 | 1.570 (13) |
C3—H2c3 | 1.06 | C34—H1c34 | 1.06 |
C4—C5 | 1.611 (16) | C34—O10 | 1.418 (9) |
C4—H1c4 | 1.06 | C35—C36 | 1.448 (17) |
C4—H2c4 | 1.06 | C35—H1c35 | 1.06 |
C5—C6 | 1.488 (10) | C35—H2c35 | 1.06 |
C5—C7 | 1.532 (14) | C36—N4 | 1.406 (14) |
C5—H1c5 | 1.06 | C36—O6 | 1.247 (13) |
C6—H1c6 | 1.06 | C37—C38 | 1.540 (16) |
C6—H2c6 | 1.06 | C37—C45 | 1.521 (10) |
C6—H3c6 | 1.06 | C37—H1c37 | 1.06 |
C7—C8 | 1.551 (13) | C37—N4 | 1.462 (15) |
C7—H1c7 | 1.06 | C38—C39 | 1.50 (2) |
C7—O5 | 1.451 (10) | C38—H1c38 | 1.06 |
C8—C9 | 1.532 (14) | C38—H2c38 | 1.06 |
C8—H1c8 | 1.06 | C39—C40 | 1.43 (3) |
C8—H2c8 | 1.06 | C39—C40' | 1.55 (3) |
C9—N1 | 1.314 (13) | C39—C44 | 1.47 (3) |
C9—O1 | 1.241 (13) | C39—C44' | 1.24 (2) |
C10—C11 | 1.538 (14) | C40—C40' | 1.06 (3) |
C10—C18 | 1.497 (11) | C40—C41 | 1.50 (5) |
C10—H1c10 | 1.06 | C40—H1c40 | 1.06 |
C10—N1 | 1.443 (13) | C40'—C41' | 1.40 (4) |
C11—C12 | 1.518 (12) | C40'—H1c40' | 1.06 |
C11—H1c11 | 1.06 | C41—C41' | 0.95 (3) |
C11—H2c11 | 1.06 | C41—C42 | 1.36 (3) |
C12—C13 | 1.379 (11) | C41—H1c41 | 1.06 |
C12—C17 | 1.413 (16) | C41'—C42 | 1.40 (3) |
C13—C14 | 1.378 (13) | C41'—H1c41' | 1.06 |
C13—H1c13 | 1.06 | C42—C43 | 1.38 (3) |
C14—C15 | 1.467 (16) | C42—C43' | 1.33 (3) |
C14—H1c14 | 1.06 | C42—H1c42 | 1.06 |
C15—C16 | 1.382 (13) | C43—C43' | 0.93 (3) |
C15—H1c15 | 1.06 | C43—C44 | 1.44 (5) |
C16—C17 | 1.372 (14) | C43—H1c43 | 1.06 |
C16—H1c16 | 1.06 | C43'—C44 | 1.65 (4) |
C17—H1c17 | 1.06 | C43'—C44' | 1.50 (5) |
C18—N2 | 1.319 (10) | C43'—H1c43' | 1.06 |
C18—O2 | 1.272 (9) | C44—C44' | 0.96 (3) |
C19—C20 | 1.527 (12) | C44—H1c44 | 1.06 |
C19—C21 | 1.510 (15) | C44'—H1c44' | 1.06 |
C19—H1c19 | 1.06 | C45—N5 | 1.326 (11) |
C19—N2 | 1.462 (12) | C45—O7 | 1.259 (12) |
C20—H1c20 | 1.06 | C46—C47 | 1.381 (15) |
C20—H2c20 | 1.06 | C46—C48 | 1.575 (16) |
C20—H3c20 | 1.06 | C46—H1c46 | 1.06 |
C21—N3 | 1.383 (13) | C46—N5 | 1.411 (10) |
C21—O3 | 1.275 (11) | C47—H1c47 | 1.06 |
C22—C23 | 1.558 (18) | C47—H2c47 | 1.06 |
C22—C27 | 1.507 (11) | C47—H3c47 | 1.06 |
C22—H1c22 | 1.06 | C48—N6 | 1.387 (16) |
C22—N3 | 1.455 (15) | C48—O8 | 1.199 (12) |
C23—C24 | 1.521 (13) | C49—C50 | 1.59 (2) |
C23—H1c23 | 1.06 | C49—C54 | 1.543 (12) |
C23—H2c23 | 1.06 | C49—H1c49 | 1.06 |
C24—C25 | 1.547 (14) | C49—N6 | 1.410 (18) |
C24—C26 | 1.54 (2) | C50—C51 | 1.68 (3) |
C24—H1c24 | 1.06 | C50—H1c50 | 1.06 |
C25—H1c25 | 1.06 | C50—H2c50 | 1.06 |
C25—H2c25 | 1.06 | C51—C52 | 1.52 (2) |
C25—H3c25 | 1.06 | C51—C53 | 1.52 (3) |
C26—H1c26 | 1.06 | C51—H1c51 | 1.06 |
C26—H2c26 | 1.06 | C52—H1c52 | 1.06 |
C26—H3c26 | 1.06 | C52—H2c52 | 1.06 |
C27—O4 | 1.207 (12) | C52—H3c52 | 1.06 |
C27—O5 | 1.327 (11) | C53—H1c53 | 1.06 |
C28—C29 | 1.52 (2) | C53—H2c53 | 1.06 |
C28—H1c28 | 1.06 | C53—H3c53 | 1.06 |
C28—H2c28 | 1.06 | C54—O9 | 1.154 (13) |
C28—H3c28 | 1.06 | C54—O10 | 1.349 (12) |
C29—C30 | 1.455 (18) | H1c40'—H1c40'i | 0.7703 |
C29—H1c29 | 1.06 | H1n1—N1 | 1.01 |
C29—H2c29 | 1.06 | H1n2—N2 | 1.01 |
C30—C31 | 1.58 (2) | H1n3—N3 | 1.01 |
C30—H1c30 | 1.06 | H1n4—N4 | 1.01 |
C30—H2c30 | 1.06 | H1n5—N5 | 1.01 |
C31—C32 | 1.558 (15) | H1n6—N6 | 1.01 |
C2—C1—H1c1 | 109.47 | C35—C34—O10 | 104.8 (7) |
C2—C1—H2c1 | 109.47 | H1c34—C34—O10 | 114.89 |
C2—C1—H3c1 | 109.47 | C34—C35—C36 | 114.1 (8) |
H1c1—C1—H2c1 | 109.47 | C34—C35—H1c35 | 109.47 |
H1c1—C1—H3c1 | 109.47 | C34—C35—H2c35 | 109.47 |
H2c1—C1—H3c1 | 109.47 | C36—C35—H1c35 | 109.47 |
C1—C2—C3 | 123.2 (19) | C36—C35—H2c35 | 109.47 |
C1—C2—H1c2 | 109.47 | H1c35—C35—H2c35 | 104.42 |
C1—C2—H2c2 | 109.47 | C35—C36—N4 | 119.1 (9) |
C3—C2—H1c2 | 109.47 | C35—C36—O6 | 121.7 (10) |
C3—C2—H2c2 | 109.47 | N4—C36—O6 | 119.1 (11) |
H1c2—C2—H2c2 | 90.95 | C38—C37—C45 | 110.3 (8) |
C2—C3—C4 | 113.7 (12) | C38—C37—H1c37 | 108.82 |
C2—C3—H1c3 | 109.47 | C38—C37—N4 | 107.8 (8) |
C2—C3—H2c3 | 109.47 | C45—C37—H1c37 | 110.89 |
C4—C3—H1c3 | 109.47 | C45—C37—N4 | 105.6 (9) |
C4—C3—H2c3 | 109.47 | H1c37—C37—N4 | 113.3 |
H1c3—C3—H2c3 | 104.84 | C37—C38—C39 | 111.3 (8) |
C3—C4—C5 | 112.6 (9) | C37—C38—H1c38 | 109.47 |
C3—C4—H1c4 | 109.47 | C37—C38—H2c38 | 109.47 |
C3—C4—H2c4 | 109.47 | C39—C38—H1c38 | 109.47 |
C5—C4—H1c4 | 109.47 | C39—C38—H2c38 | 109.47 |
C5—C4—H2c4 | 109.47 | H1c38—C38—H2c38 | 107.58 |
H1c4—C4—H2c4 | 106.21 | C38—C39—C40 | 117.9 (18) |
C4—C5—C6 | 111.7 (7) | C38—C39—C40' | 116.3 (13) |
C4—C5—C7 | 111.1 (8) | C38—C39—C44 | 120.2 (15) |
C4—C5—H1c5 | 108.52 | C38—C39—C44' | 119.0 (17) |
C6—C5—C7 | 114.0 (9) | C40—C39—C40' | 41.2 (11) |
C6—C5—H1c5 | 105.2 | C40—C39—C44 | 122 (2) |
C7—C5—H1c5 | 105.82 | C40—C39—C44' | 108.3 (17) |
C5—C6—H1c6 | 109.47 | C40'—C39—C44 | 107.2 (17) |
C5—C6—H2c6 | 109.47 | C40'—C39—C44' | 125 (2) |
C5—C6—H3c6 | 109.47 | C44—C39—C44' | 40.7 (13) |
H1c6—C6—H2c6 | 109.47 | C39—C40—C40' | 76 (2) |
H1c6—C6—H3c6 | 109.47 | C39—C40—C41 | 115 (2) |
H2c6—C6—H3c6 | 109.47 | C39—C40—H1c40 | 122.48 |
C5—C7—C8 | 113.2 (6) | C40'—C40—C41 | 87 (3) |
C5—C7—H1c7 | 104.89 | C40'—C40—H1c40 | 106.4 |
C5—C7—O5 | 110.6 (9) | C41—C40—H1c40 | 122.48 |
C8—C7—H1c7 | 110.26 | C39—C40'—C40 | 63.2 (19) |
C8—C7—O5 | 105.3 (7) | C39—C40'—C41' | 109.9 (17) |
H1c7—C7—O5 | 112.85 | C39—C40'—H1c40' | 125.04 |
C7—C8—C9 | 116.3 (6) | C40—C40'—C41' | 89 (3) |
C7—C8—H1c8 | 109.47 | C40—C40'—H1c40' | 114.38 |
C7—C8—H2c8 | 109.47 | C41'—C40'—H1c40' | 125.04 |
C9—C8—H1c8 | 109.47 | C40—C41—C41' | 87 (3) |
C9—C8—H2c8 | 109.47 | C40—C41—C42 | 122 (2) |
H1c8—C8—H2c8 | 101.66 | C40—C41—H1c41 | 119.12 |
C8—C9—N1 | 118.4 (8) | C41'—C41—C42 | 72 (2) |
C8—C9—O1 | 116.5 (9) | C41'—C41—H1c41 | 111.38 |
N1—C9—O1 | 124.8 (10) | C42—C41—H1c41 | 119.12 |
C11—C10—C18 | 113.0 (7) | C40'—C41'—C41 | 97 (3) |
C11—C10—H1c10 | 103.1 | C40'—C41'—C42 | 128 (2) |
C11—C10—N1 | 113.6 (7) | C40'—C41'—H1c41' | 115.78 |
C18—C10—H1c10 | 110.82 | C41—C41'—C42 | 67 (2) |
C18—C10—N1 | 106.3 (9) | C41—C41'—H1c41' | 107.51 |
H1c10—C10—N1 | 110.17 | C42—C41'—H1c41' | 115.78 |
C10—C11—C12 | 112.4 (7) | C41—C42—C41' | 40.2 (12) |
C10—C11—H1c11 | 109.47 | C41—C42—C43 | 123 (2) |
C10—C11—H2c11 | 109.47 | C41—C42—C43' | 103 (2) |
C12—C11—H1c11 | 109.47 | C41—C42—H1c42 | 118.49 |
C12—C11—H2c11 | 109.47 | C41'—C42—C43 | 106.0 (17) |
H1c11—C11—H2c11 | 106.32 | C41'—C42—C43' | 115 (2) |
C11—C12—C13 | 120.2 (9) | C41'—C42—H1c42 | 120.8 |
C11—C12—C17 | 120.2 (7) | C43—C42—C43' | 40.3 (13) |
C13—C12—C17 | 119.5 (8) | C43—C42—H1c42 | 118.49 |
C12—C13—C14 | 121.0 (10) | C43'—C42—H1c42 | 124.14 |
C12—C13—H1c13 | 119.5 | C42—C43—C43' | 67 (2) |
C14—C13—H1c13 | 119.5 | C42—C43—C44 | 120 (3) |
C13—C14—C15 | 121.1 (8) | C42—C43—H1c43 | 119.97 |
C13—C14—H1c14 | 119.46 | C43'—C43—C44 | 85 (3) |
C15—C14—H1c14 | 119.46 | C43'—C43—H1c43 | 118.09 |
C14—C15—C16 | 114.5 (9) | C44—C43—H1c43 | 119.97 |
C14—C15—H1c15 | 122.76 | C42—C43'—C43 | 73 (2) |
C16—C15—H1c15 | 122.76 | C42—C43'—C44 | 109.5 (15) |
C15—C16—C17 | 125.1 (11) | C42—C43'—C44' | 123.5 (19) |
C15—C16—H1c16 | 117.47 | C42—C43'—H1c43' | 118.25 |
C17—C16—H1c16 | 117.46 | C43—C43'—C44 | 60 (3) |
C12—C17—C16 | 118.7 (8) | C43—C43'—C44' | 96 (3) |
C12—C17—H1c17 | 120.63 | C43—C43'—H1c43' | 102.28 |
C16—C17—H1c17 | 120.63 | C44—C43'—C44' | 35.3 (15) |
C10—C18—N2 | 117.4 (5) | C44—C43'—H1c43' | 120.68 |
C10—C18—O2 | 119.4 (6) | C44'—C43'—H1c43' | 118.26 |
N2—C18—O2 | 123.1 (8) | C39—C44—C43 | 118 (2) |
C20—C19—C21 | 112.6 (7) | C39—C44—C43' | 98.2 (18) |
C20—C19—H1c19 | 106.14 | C39—C44—C44' | 57 (2) |
C20—C19—N2 | 111.9 (9) | C39—C44—H1c44 | 120.91 |
C21—C19—H1c19 | 106.93 | C43—C44—C43' | 34.3 (15) |
C21—C19—N2 | 111.2 (7) | C43—C44—C44' | 98 (3) |
H1c19—C19—N2 | 107.72 | C43—C44—H1c44 | 120.9 |
C19—C20—H1c20 | 109.47 | C43'—C44—C44' | 64 (3) |
C19—C20—H2c20 | 109.47 | C43'—C44—H1c44 | 131.71 |
C19—C20—H3c20 | 109.47 | C44'—C44—H1c44 | 113.15 |
H1c20—C20—H2c20 | 109.47 | C39—C44'—C43' | 118 (2) |
H1c20—C20—H3c20 | 109.47 | C39—C44'—C44 | 82 (2) |
H2c20—C20—H3c20 | 109.47 | C39—C44'—H1c44' | 120.79 |
C19—C21—N3 | 116.5 (8) | C43'—C44'—C44 | 81 (3) |
C19—C21—O3 | 124.4 (8) | C43'—C44'—H1c44' | 120.79 |
N3—C21—O3 | 118.5 (10) | C44—C44'—H1c44' | 106.59 |
C23—C22—C27 | 109.4 (8) | C37—C45—N5 | 117.8 (7) |
C23—C22—H1c22 | 108.68 | C37—C45—O7 | 122.4 (8) |
C23—C22—N3 | 111.7 (8) | N5—C45—O7 | 119.3 (7) |
C27—C22—H1c22 | 108.9 | C47—C46—C48 | 110.3 (8) |
C27—C22—N3 | 111.5 (9) | C47—C46—H1c46 | 99.06 |
H1c22—C22—N3 | 106.51 | C47—C46—N5 | 121.4 (10) |
C22—C23—C24 | 115.6 (8) | C48—C46—H1c46 | 116.2 |
C22—C23—H1c23 | 109.47 | C48—C46—N5 | 106.6 (8) |
C22—C23—H2c23 | 109.47 | H1c46—C46—N5 | 103.45 |
C24—C23—H1c23 | 109.47 | C46—C47—H1c47 | 109.47 |
C24—C23—H2c23 | 109.47 | C46—C47—H2c47 | 109.47 |
H1c23—C23—H2c23 | 102.62 | C46—C47—H3c47 | 109.47 |
C23—C24—C25 | 111.5 (9) | H1c47—C47—H2c47 | 109.47 |
C23—C24—C26 | 107.6 (9) | H1c47—C47—H3c47 | 109.47 |
C23—C24—H1c24 | 110.56 | H2c47—C47—H3c47 | 109.47 |
C25—C24—C26 | 112.8 (11) | C46—C48—N6 | 115.8 (8) |
C25—C24—H1c24 | 105.17 | C46—C48—O8 | 119.7 (11) |
C26—C24—H1c24 | 109.25 | N6—C48—O8 | 124.4 (12) |
C24—C25—H1c25 | 109.47 | C50—C49—C54 | 110.9 (10) |
C24—C25—H2c25 | 109.47 | C50—C49—H1c49 | 111.31 |
C24—C25—H3c25 | 109.47 | C50—C49—N6 | 106.3 (10) |
H1c25—C25—H2c25 | 109.47 | C54—C49—H1c49 | 106.21 |
H1c25—C25—H3c25 | 109.47 | C54—C49—N6 | 111.4 (9) |
H2c25—C25—H3c25 | 109.47 | H1c49—C49—N6 | 110.77 |
C24—C26—H1c26 | 109.47 | C49—C50—C51 | 116.2 (10) |
C24—C26—H2c26 | 109.47 | C49—C50—H1c50 | 109.47 |
C24—C26—H3c26 | 109.47 | C49—C50—H2c50 | 109.47 |
H1c26—C26—H2c26 | 109.47 | C51—C50—H1c50 | 109.47 |
H1c26—C26—H3c26 | 109.47 | C51—C50—H2c50 | 109.47 |
H2c26—C26—H3c26 | 109.47 | H1c50—C50—H2c50 | 101.75 |
C22—C27—O4 | 124.5 (8) | C50—C51—C52 | 112.9 (14) |
C22—C27—O5 | 110.5 (8) | C50—C51—C53 | 116.1 (13) |
O4—C27—O5 | 125.1 (7) | C50—C51—H1c51 | 102.35 |
C29—C28—H1c28 | 109.47 | C52—C51—C53 | 110.5 (17) |
C29—C28—H2c28 | 109.47 | C52—C51—H1c51 | 109 |
C29—C28—H3c28 | 109.47 | C53—C51—H1c51 | 105.14 |
H1c28—C28—H2c28 | 109.47 | C51—C52—H1c52 | 109.47 |
H1c28—C28—H3c28 | 109.47 | C51—C52—H2c52 | 109.47 |
H2c28—C28—H3c28 | 109.47 | C51—C52—H3c52 | 109.47 |
C28—C29—C30 | 116.6 (12) | H1c52—C52—H2c52 | 109.47 |
C28—C29—H1c29 | 109.47 | H1c52—C52—H3c52 | 109.47 |
C28—C29—H2c29 | 109.47 | H2c52—C52—H3c52 | 109.47 |
C30—C29—H1c29 | 109.47 | C51—C53—H1c53 | 109.47 |
C30—C29—H2c29 | 109.47 | C51—C53—H2c53 | 109.47 |
H1c29—C29—H2c29 | 101.23 | C51—C53—H3c53 | 109.47 |
C29—C30—C31 | 114.9 (10) | H1c53—C53—H2c53 | 109.47 |
C29—C30—H1c30 | 109.47 | H1c53—C53—H3c53 | 109.47 |
C29—C30—H2c30 | 109.47 | H2c53—C53—H3c53 | 109.47 |
C31—C30—H1c30 | 109.47 | C49—C54—O9 | 123.8 (8) |
C31—C30—H2c30 | 109.47 | C49—C54—O10 | 109.4 (8) |
H1c30—C30—H2c30 | 103.42 | O9—C54—O10 | 126.7 (8) |
C30—C31—C32 | 114.9 (8) | C40'—H1c40'—H1c40'i | 109.27 |
C30—C31—H1c31 | 109.47 | C9—N1—C10 | 121.8 (8) |
C30—C31—H2c31 | 109.47 | C9—N1—H1n1 | 119.11 |
C32—C31—H1c31 | 109.47 | C10—N1—H1n1 | 119.11 |
C32—C31—H2c31 | 109.47 | C18—N2—C19 | 120.5 (8) |
H1c31—C31—H2c31 | 103.46 | C18—N2—H1n2 | 119.77 |
C31—C32—C33 | 107.2 (7) | C19—N2—H1n2 | 119.77 |
C31—C32—C34 | 112.4 (8) | C21—N3—C22 | 123.2 (8) |
C31—C32—H1c32 | 111.14 | C21—N3—H1n3 | 118.38 |
C33—C32—C34 | 114.9 (8) | C22—N3—H1n3 | 118.38 |
C33—C32—H1c32 | 108.41 | C36—N4—C37 | 120.8 (9) |
C34—C32—H1c32 | 102.78 | C36—N4—H1n4 | 119.58 |
C32—C33—H1c33 | 109.47 | C37—N4—H1n4 | 119.58 |
C32—C33—H2c33 | 109.47 | C45—N5—C46 | 123.7 (8) |
C32—C33—H3c33 | 109.47 | C45—N5—H1n5 | 118.15 |
H1c33—C33—H2c33 | 109.47 | C46—N5—H1n5 | 118.15 |
H1c33—C33—H3c33 | 109.47 | C48—N6—C49 | 121.4 (9) |
H2c33—C33—H3c33 | 109.47 | C48—N6—H1n6 | 119.31 |
C32—C34—C35 | 114.1 (8) | C49—N6—H1n6 | 119.31 |
C32—C34—H1c34 | 105.64 | C7—O5—C27 | 119.0 (8) |
C32—C34—O10 | 108.4 (8) | C34—O10—C54 | 118.7 (8) |
C35—C34—H1c34 | 109.24 |
Symmetry code: (i) −x+1, y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H1c7···O1ii | 1.06 | 2.30 | 3.307 (14) | 157.79 |
C34—H1c34···O6ii | 1.06 | 2.44 | 3.422 (14) | 152.90 |
C53—H2c53···C1iii | 1.06 | 2.47 | 3.50 (4) | 164.01 |
C40′—H1c40′···C40i | 1.06 | 2.37 | 3.25 (2) | 139.76 |
C40′—H1c40′···C40′i | 1.06 | 1.50 | 2.36 (3) | 133.11 |
C40′—H1c40′···C41′i | 1.06 | 2.23 | 3.21 (3) | 152.59 |
C41—H1c41···C43iv | 1.06 | 1.91 | 2.87 (4) | 149.55 |
C41—H1c41···C44iv | 1.06 | 1.99 | 2.62 (4) | 115.00 |
C42—H1c42···O2i | 1.06 | 2.45 | 3.46 (2) | 160.70 |
C44—H1c44···C40ii | 1.06 | 1.82 | 2.79 (4) | 150.40 |
C44—H1c44···C41ii | 1.06 | 1.94 | 2.62 (4) | 118.30 |
N6—H1n6···O9iv | 1.01 | 2.24 | 3.178 (13) | 153.52 |
N5—H1n5···O7iv | 1.01 | 2.00 | 2.888 (12) | 144.65 |
N4—H1n4···O6ii | 1.01 | 1.93 | 2.910 (13) | 163.26 |
N2—H1n2···O2iv | 1.01 | 1.95 | 2.838 (12) | 145.88 |
N3—H1n3···O4iv | 1.01 | 2.19 | 3.139 (11) | 155.17 |
N1—H1n1···O1ii | 1.01 | 1.98 | 2.980 (12) | 169.65 |
Symmetry codes: (i) −x+1, y, −z; (ii) x, y−1, z; (iii) −x+1, y−1, −z+1; (iv) x, y+1, z. |
3D ED experimental information | ||
3D ED collection method | Continuous-rotation data collection from four crystals | |
Tilt information | Crystal label | αmin, αmax, Δα (°) |
a | -34.38, 33.99, 0.30 | |
b | -45.05, 16.06, 0.30 | |
c | -44.43, 32.61, 0.30 | |
d | -28.38, 10.60, 0.30 | |
Exposure time (ms) | 1014, 504, 504, 504 | |
Beam diameter (nm) | 960, 2150, 1050, 1050 | |
Camera length (mm) | 1500 | |
Crystal information | ||
Empirical formula | C27H41N3O5 | |
Z, Z' | 8, 2 | |
Space group | I2 | |
a, b, c (Å) | 40.2744 (4), 5.0976 (5), 27.698 (4) | |
α, β, γ (°) | 90, 105.729 (6), 90 | |
V (Å3) | 5473.63 | |
Apparent mosaicities (°) | 0.2765, 0.4080, 0.0598, 0.1323 | |
Completeness (%) | 100 | |
Kinematical refinement | ||
sin(θmax)/λ (Å-1) | 0.55 | |
Nobs, Nall | 3953, 6836 | |
Parameters | 298 | |
Robs, wRobs (%) | 18.39, 23.55 | |
Rall, wRall (%) | 24.58, 25.38 | |
min[ΔV(r)], max[ΔV(r)] (e Å-1) | -0.96, 1.00 | |
Dynamical refinement | ||
sin(θmax)/λ (Å-1) | 0.55 | |
Nobs, Nall | 5888, 14562 | |
Parameters | 365 | |
Robs, wRobs (%) | 11.73, 12.07 | |
Rall, wRall (%) | 17.45, 12.82 | |
min[ΔV(r)], max[ΔV(r)] (e Å-1) | -0.56, 0.53 |
Computer programs: PETS2 (Palatinus et al., 2019), JANA2020 (Petříček et al., 2023), SHELXT (Sheldrick, 2015) and VESTA (Momma & Izumi, 2008). |
The z-scores were calculated assuming configuration A is the correct assignment. |
Configuration A | Configuration B | |
Robs, wRobs (%) | 11.81, 12.16 | 15.21, 16.30 |
Rall, wRall (%) | 17.60, 12.91 | 20.96, 16.98 |
z-score from crystal b [Fig. 2(b)] | 21.2σ | |
z-score from crystal c [Fig. 2(c)] | 10.0σ | |
z-score from crystals c and c combined | 23.0σ |
Acknowledgements
The authors acknowledge the Czech Science Foundation and the Czech Technological Agency for funding the research. CzechNanoLab, funded by MEYS CR, is acknowledged for the financial support of the measurements at LNSM Research Infrastructure.
Funding information
The following funding is acknowledged: Grantov Agentura Česk Republiky (grant No. 21-05926X to L. Palatinus); Technologick Agentura Česk Republiky (grant No. SS0102045 to P. Šimek); Ministry of Education, Youth and Sports (project No. LM2023051). Open access publishing facilitated by Fyzikalni ustav Akademie ved Ceske republiky, as part of the Wiley-CzechELib agreement.
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