research papers
Relationship between synthesis method–crystal structure–melting properties in cocrystals: the case of caffeine–citric acid
aUniversité Lille, CNRS, INRA, ENSCL, UMR 8207 – UMET – Unité Matériaux et Transformations, F-59650 Villeneuve d'Ascq, France, and bSynchrotron SOLEIL, L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France
*Correspondence e-mail: mathieu.guerain@univ-lille.fr
The influence of the crystal synthesis method on the crystallographic structure of caffeine–citric acid cocrystals was analyzed thanks to the synthesis of a new polymorphic form of the cocrystal. In order to compare the new form to the already known forms, the 8H10N4O2·C6H8O7) was solved by powder X-ray diffraction thanks to synchrotron experiments. The was performed using `GALLOP', a recently developed hybrid approach based on a local optimization with a particle swarm optimizer, particularly powerful when applied to the structure resolution of materials of pharmaceutical interest, compared to classical Monte-Carlo simulated annealing. The final structure was obtained through and first-principles density functional theory (DFT) calculations were used to locate the H atoms. The symmetry is triclinic with the P and contains one molecule of caffeine and one molecule of citric acid per The crystallographic structure of this cocrystal involves different hydrogen-bond associations compared to the already known structures. The analysis of these hydrogen bonds indicates that the cocrystal obtained here is less stable than the cocrystals already identified in the literature. This analysis is confirmed by the determination of the melting point of this cocrystal, which is lower than that of the previously known cocrystals.
of the new cocrystal (CKeywords: GALLOP; powder X-ray diffraction; caffeine; citric acid; cocrystal; DFT; synchrotron; polymorph; synthesis.
CCDC reference: 2348459
1. Introduction
In recent years, the design of functional pharmaceutical molecular materials by the cocrystallization technique has attracted increasing interest (Friščić & Jones, 2010) when other classical approaches based, for example, on salt formation or metastable polymorphs are not possible. The significant growth of this approach stems from the fact that numerous newly synthesized active pharmaceutical ingredients (APIs) in crystalline form exhibit insufficient solubility and bioavailability, constraining their therapeutic efficacy. Choosing a highly water-soluble coformer to construct an assembly of multiple neutral chemical species in the same via weak supramolecular interactions of various nature, such as van der Waals, hydrogen, halogen or π–π bonds, makes it possible to improve the bioavailability of APIs while preserving the physical stability intrinsic to the crystalline state. Pharmaceutical cocrystals generally consist of an API and a coformer present in the same (Friščić & Jones, 2010; Vishweshwar et al., 2006; Schultheiss & Newman, 2009; Brittain, 2013; Childs et al., 2009), for example, paracetamol–piperazine (Oswald & Pulham, 2008), ibuprofen–nicotinamide (Berry et al., 2008; Guerain, Guinet et al., 2020), carbamazepine–saccharin (Fleischman et al., 2003), carbamazepine–DL-tartaric acid (Guerain, Derollez et al., 2020), etc. These multicomponent materials in the crystalline solid state have an obvious interest in terms of stability, but also to improve many physicochemical properties of an API, such as aqueous solubility, dissolution, hygroscopicity or bioavailability. However, the discovery and preparation of new cocrystals remains empirical and is still based on trial and error (ter Horst et al., 2009). Cocrystallization can be achieved by many different techniques, such as crystallization in solution, milling, milling assisted by a solvent, use of supercritical fluids or sonocrystallization, which may lead to different crystalline polymorphs in an uncontrolled manner (Schultheiss & Newman, 2009; ter Horst et al., 2009; Karimi-Jafari et al., 2018). It is worth noting that the preparation method has a direct influence on the structure of the cocrystal, which itself has a direct influence on the properties (Guerain, Derollez et al., 2020; Guerain, Guinet et al., 2020; Karki et al., 2007; Smit & Hagen, 2015; Fleischman et al., 2003).
Caffeine (CAF, C8H10N4O2, 1,3,7-trimethyl-2,3,6,7-tetrahydro-1H-purine-2,6-dione, see Fig. 1) is a xanthine alkaloid psychoactive stimulant drug and has been reported to crystallize as two polymorphic forms (Enright et al., 2007) and one hemihydrate (Edwards et al., 1997). Citric acid (CA, C6H8O7, 2-hydroxypropane-1,2,3-tricarboxylic acid, see Fig. 2) is a crystalline organic acid which is often used as a coformer for cocrystallization. These two molecules form two known cocrystals.
(i) The first polymorph was synthesized by milling together caffeine and citric acid with a 1:1 molar ratio (Karki et al., 2007). It is reported under the reference code KIGKER in the Cambridge Structural Database (CSD; Groom et al., 2016). The authors mention that milling the mixture with or without liquid leads to the same triclinic structure (space group No. 2, P) with the following unit-cell parameters: a = 7.38740 (10), b = 8.3967 (2), c = 13.5053 (3) Å, α = 91.3330 (10), β = 99.0400 (10), γ = 99.5880 (10)° and V = 814.716 Å3.
(ii) The second polymorph (CSD refcode KIGKER01) was synthesized by slow evaporation from a v/v) (Smit & Hagen, 2015). The crystalline symmetry of the resulting cocrystal is monoclinic (space group No. 14, P21/c) with the following unit-cell parameters: a = 13.7783 (8), b = 12.3149 (8), c = 9.6587 (6) Å, β = 92.854 (4)° and V = 1636.84 Å3. The melting temperature of this cocrystal is 158.9 °C.
of caffeine and citric acid (at about 30 °C) in a 1:1 molar ratio in chloroform/methanol (1:1In this work, CAF–CA cocrystals have been synthesized from caffeine monohydrate and citric acid from milling and solvent evaporation (Scheme 1). The present article aims to highlight the influence of the synthesis method on the hydrogen-bond association, crystallographic structure and structural disorder of CAF–CA cocrystals, and the consequences on their melting properties. For this, it was necessary to solve the crystallographic structure of a new CAF–CA cocrystal obtained by solvent evaporation to compare it with the already known cocrystals (Berry et al., 2008; Lemmerer et al., 2013; Surov et al., 2023; Guerain, Guinet et al., 2020). The structure of the new cocrystal was solved ab initio from powder X-ray diffraction using a recently developed hybrid algorithm, namely, GALLOP, based on a local optimization with a particle swarm optimizer (Spillman & Shankland, 2021). This approach was compared to classical Monte-Carlo simulated annealing algorithms based on global optimization, and the structure was confirmed by H atoms were located by first-principles density functional theory (DFT) calculations.
2. Experimental
2.1. Materials
Caffeine monohydrate (purity higher than 98.5%) was purchased from ACROS and the material was used without any purification. An analysis of the powder X-ray diffraction pattern showed that the commercial material is in the stable monoclinic phase (CSD refcode CAFINE01; Edwards et al., 1997).
Citric Acid (purity higher than 99.5%) was purchased from Sigma–Aldrich and the material was used without any purification. An analysis of the powder X-ray diffraction pattern showed that the commercial material is in the stable orthorhombic phase (CSD refcode CITARC01; King et al., 2011).
2.2. Cocrystal synthesis
Cocrystals were synthesized using two different methods, i.e. by milling and by evaporation from a solution.
The milling was performed with a 1:1 molar mixture corresponding to 212 mg of caffeine monohydrate and 192 mg of citric acid on a vibrating-mill Retsch MM400 at 30 Hz. ZrO2 milling jars of 10 cm3 were used, with one ball (diameter 10 mm). The milling time was set at 30 min. We took care to alternate milling periods (typically 10 min) with pause periods (typically 5 min) in order to limit the mechanical heating of the sample. No liquid was used for assistance.
Cocrystals were also synthesized by slow evaporation (at about 30°C) from a 1:1 molar stoichiometric mixture of 212 mg of caffeine monohydrate and 192 mg of citric acid dissolved in an acetonitrile–ethanol mixture (1:1 v/v).
2.3. Raman spectroscopy analysis
Raman spectroscopy investigations were performed using two spectrometers, depending on the investigated spectral domain.
Low-wavenumber Raman spectra were collected in the 5–300 cm−1 range using a highly dispersive XY Dilor Raman spectrometer to analyse the non-polarized back-scattered light. The spectrometer is composed of a triple monochromator in a configuration characterized by a focal length of 800 mm. The choice of experimental conditions (incident radiation from a mixed argon–krypton coherent laser selected at 514.5 nm, and entrance and exit slit widths opened at 150 µm) allows the rejection of the below 5 cm−1 without additional filters, and gives a spectral resolution of about 1 cm−1 in the 5–300 cm−1 region. This spectrometer was only used for analyzing the low-frequency region characterized by a relatively intense Raman signal, spectra being taken in 120 s. This spectral region gives the opportunity to analyse lattice modes, giving the crystalline fingerprint of polymorphic forms.
High-frequency (2700–3200 cm−1) Raman spectra were collected using an InVia Renishaw micro-Raman spectrometer. The laser line (514.5 nm line from a Fandango Cobolt laser) was focused on the powder sample via a Leica X50 objective providing the signal within a volume of about 150 µm3. The sample temperature was controlled by placing the sample in a THMS 600 Linkam temperature device.
2.4. Synchrotron experiments and data collection
The powder X-ray diffraction (PXRD) patterns were measured at the high-resolution powder diffraction beamline CRISTAL at the Synchrotron SOLEIL in France. The beamline is equipped with a 1D MYTHEN2 X detector. The selected energy was 17 keV, corresponding to a wavelength (λ) of 0.7289 Å and a NIST LaB6 660a sample was used for calibration. The cocrystal powder was enclosed in a glass capillary (diameter 0.5 mm) and mounted on the goniometer head. The capillary was rotated during the experiments to reduce the effect of a possible preferential orientation. In order to limit radiation damage, data were collected at room temperature in the 2.5–50° 2θ range in less than 2 min.
2.5. Density functional theory (DFT) calculations
First-principles calculations were performed using the program pw.x, as implemented in the package Quantum ESPRESSO (Giannozzi et al., 2009, 2017). The generalized gradient approximation (GGA) with the Perdew–Burke–Ernzerhoff for solids (PBEsol) exchange correlation function was employed (Perdew et al., 1996). Projector-augmented wave pseudopotentials for all elements (C, N, O and H) from the `precision' Standard Solid State Pseudo-potential (SSSP) library were used in the calculations (Prandini et al., 2018). The wave function cut-off energy was set to 60 Ryd and the was sampled with a 2 × 3 × 4 Monkhorst–Pack k-point grid (Monkhorst & Pack, 1976). In order to calculate more accurately the van der Waals interactions, an empirical dispersion correction was included in the DFT calculations with the Grimme's DFT-D3 scheme (Grimme et al., 2010).
3. Results
3.1. Cocrystal synthesis and identification
The low-frequency Raman spectra (LFRS) in the 5–300 cm−1 region provide the crystalline fingerprints of the cocrystals. The difference in the structural description is clearly observed in the spectra of the lattice modes of the two cocrystals prepared by milling and solvent evaporation, plotted in Fig. 3, directly representative of their crystalline identity. The Raman spectrum collected for the cocrystals prepared by milling provides information in agreement with that published by Karki et al. (2007). By contrast, the spectrum of the cocrystals synthetized from solvent evaporation shows significant differences compared to the spectrum of the cocrystals prepared by milling and whose structure is already known.
An important consequence arising from these investigations is the evidence of a new crystalline form for caffeine–citric acid cocrystals, denoted CAF–CA [the previous known forms are called KIGKER and KIGKER01 with reference to the Cambridge Structural Database (CSD) refcodes]. Indeed, it turns out that this CAF–CA cocrystal does not correspond to that published by Karki et al. (2007) with CSD refcode KIGKER or to that published by Smit & Hagen (2015) with CSD refcode KIGKER01.
It was also impossible to reproduce the KIGKER01 cocrystal in our laboratory. Such results are not surprising because such cases have already been reported in the literature as `disappearing polymorphs' (Hasa et al., 2020; Dunitz & Bernstein, 1995; Blagden et al., 1998). This is precisely the case with this system (caffeine and citric acid), in particular, which has been the subject of a dedicated publication (Hasa et al., 2020). The authors mention several parameters which could lead to the `disappearance' of caffeine–citric acid cocrystal polymorphs.
These parameters are difficult to control, and to report in the literature, during synthesis by both milling and solvent evaporation, and include atmospheric moisture in the laboratory and the possible existence of `invisible seeds' which could `infect' the laboratory and drive the crystallization toward a given polymorph (Hasa et al., 2020; Dunitz & Bernstein, 1995; Blagden et al., 1998). In our case, it is also possible that the evaporation rate of the solvent during the synthesis of the cocrystal is a parameter to consider, but this is also difficult to quantify and control.
In any case, to the best of our knowledge, the CAF–CA cocrystal is not referred to in the literature or in the following databases: CSD (Groom et al., 2016), crystallographic open database (COD) (Gražulis et al., 2009) and the PDF-2 database of the International Center for Diffraction Data (ICDD) (Gates-Rector & Blanton, 2019). It was therefore necessary to solve this cocrystal in order to be able to compare its with the structures of the published cocrystals.
3.2. Structure solution and of the new CAF–CA cocrystal
The indexation of the data obtained at the Synchrotron SOLEIL was performed using DICVOL (Boultif & Louër, 2004), as implemented in the FullProf suite. The best solution suggests a triclinic symmetry with lattice parameters of a = 14.79, b = 8.95, c = 7.02 Å, α = 106.36, β = 95.84, γ = 97.47° and V = 876.12 Å3. The calculated figures of merit (de Wolff et al., 1968; Smith & Snyder, 1979) are M(20) = 10.9 and F(20) = 61.9. A space-group determination indicates P (No. 2), which has a higher frequency in the CSD, i.e. 25.2% versus 1% for P1 (No. 1) as of January 2023 (Groom et al., 2016). Moreover, the KIGKER structure crystallizes in the P (No. 2) and exhibits a similar unit-cell volume of 814.716 Å3, the present structure exhibits a unit-cell volume of 848.639 (2) Å3. The KIGKER structure is built up from an containing two CAF and two CA molecules. The was thus performed using an with this content.
The ab initio was performed with the recently developed hybrid algorithm GALLOP, which combines a local optimization with a particle swarm optimizer (Spillman & Shankland, 2021). Making use of graphics processing units (GPUs), this approach allows us to explore intelligently, through the particle swarm optimizer, several thousand starting positions of known molecules followed by a local optimization. GALLOP requires Pawley fitting output files from DASH, GSAS-II or Topas, as well as the molecule(s) described in the Z-matrix format produced by DASH. This makes it particularly suitable for solving the structures of new crystals of known molecules. Here, the caffeine molecule and the citric acid molecule were retrieved from the CSD, i.e. from the monoclinic caffeine hydrate phase model (Sutor, 1958; Edwards et al., 1997) and from the orthorhombic citric acid hydrate phase model (King et al., 2011), respectively. The volume calculated from the indexation (V = 876.16 Å3) being similar to one of the cocrystals reported by Karki et al. (2007) (V = 814.7 Å3), one molecule of caffeine and one molecule of citric acid were introduced randomly in the The calculation was performed with the GALLOP python API on google colab using a NVIDIA Tesla K80 GPU. Using the default parameters, i.e. a number of swarms of 10 and a number of particles per swarm of 10000 for the particle swarm optimizer, and a number of 500 iterations for the local optimization, the calculation lasts for approximately 6 min.
The so-obtained structure was compared to the two other structures obtained by well-established SDPD (Structure Determination from Powder Diffraction) programs based on rigid-bodies molecules. Thus, the was also achieved with DASH (David et al., 2006) and FOX (Favre-Nicolin & Černý, 2002). Contrary to GALLOP, which is based on local optimization, both programs are based on global-optimization algorithms using simulated annealing and parallel tempering algorithms, respectively, to solve the structure by performing trials in The best solutions obtained by these three programs are displayed in Fig. S1 in the supporting information, one can see they are in good agreement with one another. GALLOP is thus adapted to solve the structure of cocrystals from powder diffraction measured at the synchrotron. Moreover, the GALLOP calculation (without considering the set-up of the calculation) was performed in less than a minute, while a few hours were required for DASH and FOX. A thorough comparison remains complicated as these codes are built up differently, indeed GALLOP runs on a GPU while DASH and FOX run on a CPU.
The positions of the H atoms were obtained by density functional theory (DFT) calculations. Using the structure determined from GALLOP, a ground-state calculation was performed allowing only the H atoms to move freely. The heavy atoms, i.e. carbon, nitrogen and oxygen, were fixed in their positions, and the lattice parameters were also fixed.
Finally, a ). The structure contains the position of the heavy atoms obtained from GALLOP and the H atoms obtained from DFT-D3 calculations. The was performed with the program Jana2020 (Petrícek et al., 2014) to generate the most accurate and complete file possible. The lattice parameters and final conventional Rietveld factors after are available in Table 1, together with the crystallographic data, profile and structural parameters.
was performed to validate the model and to refine the structure with the experimental powder X-ray diffraction pattern (Fig. 4
|
3.3. Temperature dependence of the C—H stretching spectrum and melting properties of the cocrystals
The melting temperature of the CAF–CA cocrystals was determined thanks to high-temperature Raman spectroscopy experiments. The Raman spectrum in the range 2700–3200 cm−1 corresponds to the spectrum of the C—H stretching vibrations. The temperature dependence of the spectrum is plotted in Fig. 5. The C—H stretching region is dominated by a doublet clearly distinguishable between 20 and 130 °C. At 135 °C, the spectrum can be considered as the envelope of Raman bands observed at lower temperature, and the most intense Raman bands within the doublet have merged into a broadened band. It is well known that the C—H stretching region is almost temperature independent, except on either side of a (Hédoux, 2016; Hédoux et al., 2011). Consequently, the very broad C—H stretching spectrum taken at 135 °C is typically mimicking the spectrum of the liquid, and reveals the melting of the cocrystalline form below 135 °C.
The melting temperature of KIGKER01 has been reported as 158.9°C (Smit & Hagen, 2015). The melting temperature of cocrystal KIGKER reported in the literature (Karki et al., 2007) was also assessed in our work (see Fig. S2 in the supporting information) and is close to 161 °C. The melting point of the CAF–CA cocrystal is therefore 24 °C lower than the melting point of the KIGKER01 cocrystal and 26 °C lower than the melting point of the KIGKER cocrystal.
4. Discussion
We compare here the structure of a new CAF–CA cocrystal synthesized by slow evaporation from acetonitrile/ethanol (denoted CAF–CA) with the cocrystals synthesized by ball milling (denoted KIGKER after its CSD refcode) and slow evaporation from chloroform/methanol (denoted KIGKER01 after its CSD refcode).
The lattice parameters of CAF–CA, KIGKER and KIGKER01 are given in Table 2. Both CAF–CA and KIGKER are triclinic with P symmetry and a close unit-cell volume and b parameter, but different a and c parameters. The α angle is also very different between the two structures, since it is 15° higher for CAF–CA than for KIGKER. One can note that KIGKER01 has a very different crystallographic structure; it is monoclinic (P21/c) with twice the unit-cell volume of the other structure.
These differences are due to the structural arrangements of the molecules. In the case of the CAF–CA cocrystal, one can see the formation of O—H⋯N (O7—H4⋯N3) hydrogen bonds between CA and CAF molecules, but also an O—H⋯O (O6—H3⋯O2) hydrogen-bonded dimer binding the CA molecules (see Fig. 6). Thus, the CA molecules are stacked along the c axis through these hydrogen bonds. The CAF molecules are also stacked along the c axis, with a 180° rotation between two molecules. Along the a axis, there is an alternation between CAF and CA molecules, which explains why the a parameter is the largest of the lattice parameters (Fig. 7).
In cocrystals KIGKER and KIGKER01, no dimers are observed (see Fig. 8). For KIGKER, one can see O—H⋯O and O—H⋯N hydrogen bonds, namely, O6—H3⋯O5 hydrogen bonds between CA molecules and O1—H1⋯O8, O7—H4⋯O9 and O4—H2⋯N3 hydrogen bonds between CA and CAF molecules. For KIGKER01, O—H⋯O and O—H⋯N hydrogen bonds are also observed, namely, O7—H4⋯O5 hydrogen bonds bind the CA molecules together, while O4—H2⋯O9 and O6—H3⋯N3 hydrogen bonds bind the CA and CAF molecules.
These different hydrogen-bond networks lead to different crystallographic structures of the CAF–CA cocrystals (see Fig. 9). For KIGKER, CAF and CA molecules are stacked along the b axis, leading to a lattice parameter smaller than 10 Å in this direction. Along the c and a axes, there is an alternation between CAF and CA molecules. This is an important difference with respect to the CAF–CA cocrystal, where the alternation exists only along one direction. The KIGKER01 structure is very different from that of the CAF–CA cocrystal with an alternation of CAF and CA molecules along the a axis, but in particular a zigzag arrangement of CAF molecules in the bc plane. This suggests that the chosen synthesis method, especially the tools utilized in preparing the compound, significantly shapes the resulting crystallographic structures and the hydrogen-bond network and, consequently, influences the physico-chemical properties.
It is well known that the bonding network influences the melting properties of an organic compound. Indeed, the melting point of the CAF–CA cocrystal (135 °C) is lower than those of KIGKER (161 °C) and KIGKER01 (158.9 °C), indicating that the CAF–CA ). Such calculations were performed on the three cocrystals: CAF–CA, KIGKER and KIGKER01. The obtained energies are −1910962.41, −1911085.31 and −1911085.05 kJ mol−1, respectively. These calculations indicate the order of stability to be KIGKER > KIGKER01 >> CAF–CA, which is in good agreement with the melting temperature of the cocrystals. Further calculations were also conducted on the conformations of citric acid and caffeine. As can be seen in Table 3, the conformation of citric acid is notably more stable in KIGKER compared to KIGKER01, which is itself more stable compared to CAF–CA. Interestingly, caffeine exhibits a comparable conformation in all three cocrystals.
is less stable with regard to temperature. This was confirmed by ground-state DFT calculations (see Table 3
|
Thus, the KIGKER cocrystal, given the very energetic nature of the synthesis by milling, is the more stable polymorphic form, followed by the KIGKER01 cocrystal synthesized by slow evaporation. As can be seen in Fig. 8, KIGKER has four types of hydrogen bonds (O6—H3⋯O5, O1—H1⋯O8, O7—H4⋯O9 and O4—H2⋯N3), resulting in higher stability than KIGKER01, which has three types of hydrogen bonds (O7—H4⋯O5, O4—H2⋯O9 and O6—H3⋯N3). It is therefore not surprising that KIGKER and KIGKER01 are more stable than CAF–CA, with a higher melting temperature, since CAF–CA has only two types of hydrogen bonds (O6—H3⋯O2 and O7—H4⋯N3), as seen in Fig. 6. A comparison between the hydrogen bonds of CAF–CA, KIGKER and KIGKER01 is summarized in Table 3. Finally, the synthesis method used influences the network of hydrogen bonds formed, which itself influences the melting point of the cocrystal. A clear correlation is observed between the density of the hydrogen bonds of the cocrystal and the melting point.
Supporting information
CCDC reference: 2348459
https://doi.org/10.1107/S205322962400319X/fp3096sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S205322962400319X/fp3096Isup2.hkl
Additional figures. DOI: https://doi.org/10.1107/S205322962400319X/fp3096sup3.pdf
Supporting information file. DOI: https://doi.org/10.1107/S205322962400319X/fp3096Isup4.cml
C8H10N4O2·C6H8O7 | γ = 97.55 (1)° |
Mr = 386.3 | V = 848.64 (1) Å3 |
Triclinic, P1 | Z = 2 |
Hall symbol: -P 1 | F(000) = 404 |
a = 14.6803 (3) Å | Dx = 1.512 Mg m−3 |
b = 8.8743 (2) Å | Melting point: 408 K |
c = 6.9537 (7) Å | Synchrotron radiation |
α = 106.9221 (1)° | T = 293 K |
β = 96.304 (1)° | white |
Synchrotron diffractometer | 2θmin = 2.5°, 2θmax = 49.996°, 2θstep = 0.004° |
Radiation source: synchrotron, synchrotron |
Rp = 0.070 | 0 restraints |
Rwp = 0.110 | 0 constraints |
Rexp = 0.021 | H-atom parameters constrained |
R(F) = 0.145 | Weighting scheme based on measured s.u.'s |
11875 data points | (Δ/σ)max = 0.13 |
Profile function: Pseudo-Voigt | Background function: 8 Legendre polynoms |
15 parameters | Preferred orientation correction: none |
x | y | z | Uiso*/Ueq | ||
C9 | 0.45171 | 0.33369 | 0.15086 | 0.0127* | |
C8 | 0.46113 | 0.63964 | 0.28654 | 0.0127* | |
C14 | 0.55626 | 0.63084 | 0.33976 | 0.0127* | |
C7 | 0.59675 | 0.48561 | 0.28027 | 0.0127* | |
C10 | 0.71819 | 0.69101 | 0.44235 | 0.0127* | |
H9 | 0.783809 | 0.756633 | 0.531653 | 0.0127* | |
C13 | 0.59497 | 0.19192 | 0.1516 | 0.0127* | |
H17 | 0.565872 | 0.102472 | 0.219265 | 0.0127* | |
H18 | 0.668251 | 0.23724 | 0.216704 | 0.0127* | |
H16 | 0.587858 | 0.13406 | 0.986557 | 0.0127* | |
C11 | 0.63199 | 0.92644 | 0.53073 | 0.0127* | |
H11 | 0.5652 | 0.941502 | 0.582429 | 0.0127* | |
H12 | 0.641462 | 0.989583 | 0.418078 | 0.0127* | |
H10 | 0.686967 | 0.973213 | 0.6638 | 0.0127* | |
C12 | 0.30402 | 0.45878 | 0.14701 | 0.0127* | |
H15 | 0.276352 | 0.331161 | 0.08425 | 0.0127* | |
H13 | 0.288414 | 0.519298 | 0.033205 | 0.0127* | |
H14 | 0.279756 | 0.51375 | 0.290537 | 0.0127* | |
C2 | 0.98406 | 0.71568 | 0.48995 | 0.0127* | |
H8 | 0.987049 | 0.628817 | 0.572993 | 0.0127* | |
H7 | 0.92297 | 0.773601 | 0.50735 | 0.0127* | |
C5 | 0.07841 | 0.84857 | 0.57839 | 0.0127* | |
C3 | 0.15798 | 0.74208 | 0.5661 | 0.0127* | |
C1 | 0.07344 | 0.9137 | 0.80725 | 0.0127* | |
H5 | 0.018647 | 0.987485 | 0.832091 | 0.0127* | |
H6 | 0.063102 | 0.812089 | 0.866487 | 0.0127* | |
C6 | 0.17119 | 0.02517 | 0.9236 | 0.0127* | |
C4 | 0.98545 | 0.63195 | 0.25771 | 0.0127* | |
N1 | 0.40975 | 0.47348 | 0.19511 | 0.0127* | |
N4 | 0.54791 | 0.32589 | 0.19627 | 0.0127* | |
N2 | 0.63397 | 0.75395 | 0.43973 | 0.0127* | |
N3 | 0.69344 | 0.52306 | 0.34299 | 0.0127* | |
O9 | 0.40209 | 0.20419 | 0.05532 | 0.0127* | |
O8 | 0.42763 | 0.7552 | 0.32008 | 0.0127* | |
O4 | 0.16605 | 0.07139 | 0.11972 | 0.0127* | |
H2 | 0.113964 | 0.137594 | 0.145672 | 0.0127* | |
O5 | 0.24166 | 0.04018 | 0.8566 | 0.0127* | |
O6 | 0.04219 | 0.53091 | 0.24444 | 0.0127* | |
H3 | 0.051567 | 0.467163 | 0.100689 | 0.0127* | |
O2 | 0.9321 | 0.65171 | 0.11958 | 0.0127* | |
O7 | 0.16864 | 0.65153 | 0.68132 | 0.0127* | |
H4 | 0.78500 | 0.42729 | 0.33901 | 0.0127* | |
O3 | 0.22264 | 0.75453 | 0.44739 | 0.0127* | |
O1 | 0.10729 | 0.94861 | 0.46184 | 0.0127* | |
H1 | 0.158533 | 0.02946 | 0.55251 | 0.0127* |
C9—N1 | 1.4259 | C12—H14 | 1.096 |
C9—N4 | 1.4281 | C12—N1 | 1.5315 |
C9—O9 | 1.2337 | C12—H8 | 1.0918 |
C8—C14 | 1.4231 | C2—H7 | 1.0917 |
C8—N1 | 1.4846 | C2—C5ii | 1.6276 |
C8—O8 | 1.1689 | C2—C4 | 1.5726 |
C14—C7 | 1.4596 | C5—C3 | 1.5906 |
C14—N2 | 1.4264 | C5—C1 | 1.5405 |
C7—N4 | 1.4224 | C5—O1 | 1.4213 |
C7—N3 | 1.404 | C3—O3 | 1.3388 |
C10—H9 | 1.0786 | C3—O7 | 1.3009 |
C10—N2 | 1.4225 | C1—H5 | 1.0994 |
C10—N3 | 1.4261 | C1—H6 | 1.0954 |
C13—H17 | 1.0984 | C1—C6iii | 1.612 |
C13—H18 | 1.0942 | C6—O4iv | 1.3187 |
C13—H16i | 1.0992 | C6—O5 | 1.1878 |
C13—N4 | 1.4266 | C4—O6ii | 1.2928 |
C11—H11 | 1.092 | C4—O2 | 1.2392 |
C11—H12 | 1.0982 | O4—H2 | 0.9742 |
C11—H10 | 1.0974 | O6—H3 | 1.0294 |
C11—N2 | 1.482 | O7—H4 | 0.9816 |
C12—H15 | 1.0911 | O1—H1iii | 0.9843 |
C12—H13 | 1.0987 | ||
N1—C9—N4 | 127.11 | H7—C2—C4 | 109.6 |
N1—C9—O9 | 118.27 | C5ii—C2—C4 | 107.68 |
N4—C9—O9 | 114.54 | C2v—C5—C3 | 102.82 |
C14—C8—N1 | 107.58 | C2v—C5—C1 | 103.34 |
C14—C8—O8 | 126.72 | C2v—C5—O1 | 119.03 |
N1—C8—O8 | 125.52 | C3—C5—C1 | 104.61 |
C8—C14—C7 | 124.92 | C3—C5—O1 | 101.51 |
C8—C14—N2 | 130.62 | C1—C5—O1 | 122.82 |
C7—C14—N2 | 104.21 | C5—C3—O3 | 120.05 |
C14—C7—N4 | 126.92 | C5—C3—O7 | 122.62 |
C14—C7—N3 | 109.65 | O3—C3—O7 | 117.04 |
N4—C7—N3 | 122.94 | C5—C1—H5 | 110.35 |
H9—C10—N2 | 124.31 | C5—C1—H6 | 108.18 |
H9—C10—N3 | 127.96 | C5—C1—C6iii | 109.2 |
N2—C10—N3 | 106.5 | H5—C1—H6 | 113.15 |
H17—C13—H18 | 110.24 | H5—C1—C6iii | 107.92 |
H17—C13—H16i | 107.89 | H6—C1—C6iii | 107.96 |
H17—C13—N4 | 110.49 | C1vi—C6—O4iv | 107.41 |
H18—C13—H16i | 110.31 | C1vi—C6—O5 | 127.44 |
H18—C13—N4 | 106.81 | O4iv—C6—O5 | 123.71 |
H16i—C13—N4 | 111.12 | C2—C4—O6ii | 107.83 |
H11—C11—H12 | 109.05 | C2—C4—O2 | 123.16 |
H11—C11—H10 | 108.27 | O6ii—C4—O2 | 128.55 |
H11—C11—N2 | 109.6 | C9—N1—C8 | 124.94 |
H12—C11—H10 | 111.83 | C9—N1—C12 | 120.13 |
H12—C11—N2 | 110.35 | C8—N1—C12 | 114.93 |
H10—C11—N2 | 107.71 | C9—N4—C7 | 107.43 |
H15—C12—H13 | 110.21 | C9—N4—C13 | 130.16 |
H15—C12—H14 | 112.2 | C7—N4—C13 | 122.07 |
H15—C12—N1 | 106.34 | C14—N2—C10 | 111.08 |
H13—C12—H14 | 112.25 | C14—N2—C11 | 126.79 |
H13—C12—N1 | 108.53 | C10—N2—C11 | 122.13 |
H14—C12—N1 | 107.02 | C7—N3—C10 | 108.56 |
H8—C2—H7 | 112.83 | C6i—O4—H2 | 111.63 |
H8—C2—C5ii | 106.7 | C4v—O6—H3 | 117.23 |
H8—C2—C4 | 109.87 | C3—O7—H4 | 109.55 |
H7—C2—C5ii | 109.99 | C5—O1—H1iii | 104.96 |
Symmetry codes: (i) x, y, z−1; (ii) x+1, y, z; (iii) x, y+1, z; (iv) x, y, z+1; (v) x−1, y, z; (vi) x, y−1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H9···O4vii | 1.08 | 2.43 | 3.2850 | 135.21 |
C13—H18···O7vii | 1.09 | 2.41 | 3.4972 | 172.05 |
C12—H14···O3 | 1.10 | 2.40 | 3.2953 | 137.52 |
C2—H8···O6vii | 1.09 | 2.19 | 3.2613 | 165.21 |
O6—H3···C4viii | 1.03 | 2.36 | 3.3231 | 154.85 |
O6—H3···O2viii | 1.03 | 1.65 | 2.6756 | 173.61 |
O3—H4···O1 | 0.98 | 1.99 | 2.5587 | 114.61 |
O1vi—H1···O5 | 0.98 | 2.29 | 3.0295 | 130.88 |
Symmetry codes: (vi) x, y−1, z; (vii) −x+1, −y+1, −z+1; (viii) −x+1, −y+1, −z. |
Crystal data | |
Chemical formula | C14H18N4O9 |
Mr | 772.6 |
Cell setting, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 14.6803 (3), 8.8743 (2), 6.9537 (7) |
α, β, γ (°) | 106.9221 (1), 96.304 (1), 97.550 (1) |
V (Å3) | 848.64 (2) |
Z | 1 |
F(000) | 404 |
µ (mm-1) | 0.128 |
Specimen shape, size (mm) | Cylinder, 0.5 |
2θ range (°) | 2.5–50° |
Data collection | |
Beamline | CRISTAL (SOLEIL) |
Specimen mounting | 0.5 mm diameter Lindemann capillary |
Data collection mode | Transmission |
Scan method | Continuous scan |
Radiation type | Synchrotron 17 KeV, λ = 0.7289 Å |
Binning size (°2θ) | 0.004 |
Refinement | |
R factors and goodness of fit | R = 0.069, Rwpnb = 0.109, Rexp = 0.020 |
Structure | a | b | c | α | β | γ | V (Å3) | Symmetry | Reference |
CAF-CA | 14.6803 | 8.8743 | 6.9537 | 106.922 | 96.304 | 97.55 | 848.639 | Triclinic P1 | This work |
KIGKER | 7.38740 | 8.3967 | 13.5053 | 91.333 | 99.040 | 99.588 | 814.72 | Triclinic P1 | Karki et al. (2007) |
KIGKER01 | 13.7783 | 12.3149 | 9.6587 | 90 | 92.854 | 90 | 1636.84 | Monoclinic P21/c | Smit & Hagen (2015) |
Tm (°C) | Hydrogen bond | Energy (eV) | |||||
Numbers | Type | Distance (Å) | Crystal | Caffeine | Citric acid | ||
CAF–CA | 135.0 | 2 | O7—H4···N3 | 1.681 | -1910972.06 | -1994223.05 | -1994223.05 |
O6—H3···O2 | 1.650 | ||||||
KIGKER01 | 158.9 | 3 | O6—H3···N3 | 1.827 | -1911084.85 | -1785066.00 | -1994338.84 |
O4—H2···O9 | 1.690 | ||||||
O7—H4···O5 | 1.753 | ||||||
KIGKER | 161.0 | 4 | O4—H2···N3 | 1.848 | -1911085.92 | -1785064.07 | -1994352.35 |
O6—H3···O5 | 2.001 | ||||||
O7—H4···O9 | 1.862 | ||||||
O1—H1···O8 | 2.103 |
Acknowledgements
The authors would like to acknowledge SOLEIL for provision of synchrotron radiation facilities and thank the CRISTAL beamline staff for their assistance.
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