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Figure 4
The crystal structure of 2-amino-4,6-di­nitro­toluene was initially determined from PXRD data at 293 K (Graham et al., 2004View full citation). The fit to the data improved significantly upon modelling disorder in the C6-nitro group, but the limited quality and resolution of the PXRD data precluded accurate refinement of the site-occupancy factors (SOFs). To address this, each O atom was modelled over two positions, with SOFs constrained to sum to 1.0 (atom numbers correspond with Table 5[link]). The structure was solved with fixed SOF values and the solution yielding the best agreement with the data was selected as most probable. Subsequent single-crystal determination at the same tem­per­a­ture (structure shown above) con­firmed the disorder model. In both determinations, each O atom of the 6-nitro group is disordered between a high-occupancy site (O23: 80% single crystal, 70% PXRD) and a low-occupancy site, with excellent agreement in the positions of the high-occupancy sites. The observed structural differences can be attributed to the disparity in available diffraction data – the single-crystal analysis utilized 1111 observed reflections extending to ∼0.8 Å resolution, while the PXRD dataset contained just 146 unique reflections with a maximum resolution of ∼1.8 Å. This represents an early application of DASH for crystal structure determination, predating the now-standard incorporation of Rietveld refinement and periodic DFT-D geometry optimization into the workflow.

Journal logoSTRUCTURAL
CHEMISTRY
ISSN: 2053-2296
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