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Figure 1
Structure of APGM and comparison with PMMs. (a) APGM ribbon representation (molecule B) coloured according to the secondary-structure elements assigned by DSSP (Kabsch & Sander, 1983 ) and HingeProt (β-strands, yellow; α-helices, magenta; turns, pink; hinges, spheres). Glycerol and sulfate located at the interface of the core and cap domains are drawn in stick mode. Atom colour codes: C, green; O, red; S, yellow. Figs. 1 and 3 were drawn with CCP4mg (McNicholas et al., 2011 ). (b) Structural superposition of APGM and PMMs, aligned by the core domains (with SwissPDBViewer; Guex & Peitsch, 1997 ), showing the different conformations of the cap domain relative to the core domain, with APGM being most closed (depicted in red; chain A). The PDB code identifies the PMM structures: 2i55
, L. mexicana PMM; 2fue
, human PMM1, 2amy
; human PMM2; 3f9r
, T. brucei PMM. |


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