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Figure 5
Examples of ion placement by phenix.refine for non-zinc transition metals. (a) Nickel-binding site in the lattice contacts of 3n6q (Totir et al., 2012BB56); purple sticks represent a symmetry-related monomer. (b) Cadmium (tan) and chloride (green) ions in 3bob (Xu et al., 2008BB62).

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