Figure 2
Sites in the curated data set found to be incorrectly modeled as waters. (a) PDB entry 2oy2, chain A, residue 1290. (b) PDB entry 3bwx, chain A, residue 629. (c) PDB entry 4fca, chain A, residue 701. Green and red meshes are mFo − DFc density at ±3.0σ. The pink mesh is anomalous difference density at 3.0σ. (a) and (b) include a gray mesh for the 2mFo − DFc density at 2.0σ. Red spheres are water molecules. Distances are labeled in Å. Images were generated using PyMOL v.1.3. |