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Figure 2
The CCP4mg interface to MrBUMP, with an illustrative representation of the domain regions found during the clustering of matches from the phmmer search. The results shown here are for a search using the sequence from PDB entry 5u4p, a protein–protein complex between 26S proteasome regulatory subunit RPN8, RPN11 and ubiquitin S31 (Worden et al., 2017BB66). The results have been clustered into four domains, two of which consist of more than one match, making them suitable for ensemble generation. The dashed line indicates the cutoff phmmer score (default = 20) used for the selection of matches to be used as search models in MR.

Journal logoSTRUCTURAL
ISSN: 2059-7983
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