Figure 6
Library-extraction and superposition workflow. The minimal input required is a template in PDB format, which describes the fold to be extracted and the path to the stored PDB (or a subset database). For any other parameter a default is available, but the user might find it useful to adjust the strictness thresholds affecting the annotation of secondary-structure elements in both the template and the target and other parameters such as the intra-score and inter-score thresholds. |