Slice'N'Dice: maximizing the value of predicted models for structural biologists

Simpkin, A.J.; Elliot, L.G.; Joseph, A.P.; Burnley, T.; Stevenson, K.; Sánchez Rodríguez, F.; Fando, M.; Krissinel, E.; McNicholas, S.; Rigden, D.J.; Keegan, R.M.

doi:10.1107/S2059798325001251

Acta Crystallographica Section D
Acta Crystallographica
Section D STRUCTURAL BIOLOGY

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Figure 6
(a) O75533, a model from the AlphaFold Protein Structure Database, coloured on a scale of orange to blue, where orange indicates a low pLDDT score (≤50) and blue indicates a high pLDDT score (≥90), aligned (r.m.s.d. 3.95 Å) with the SF3B core (chain C) from PDB entry 7b9c (grey). (b) O75533 after preprocessing, slicing and MR with Slice'N'Dice (green, r.m.s.d. 0.3 Å, global mapCC 0.47), shown against the SF3B core (chain C) from 7b9c (grey). This figure was made using Moorhen. (c) An EPE plot from AlphaFold3 for O75533.

STRUCTURAL
BIOLOGY

ISSN: 2059-7983

Volume 81| Part 3| March 2025|

https://doi.org/10.1107/S2059798325001251

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